<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:44:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269195" ref_strand="+" ref_description="SGN-E269195 [cLEI-16-J19]">
      <seq>aggaaaattcaatcacttgagaggagtatttctcctgtgactcattctttaattaggtttacctatcctgagattgcttctgctactaggaatttttcaaaaggtagagttttgggaagaggagcattgagctatgttttcagaggaagagttggatttatgaggactactgttgcgattaagcggttagatagggaagacaaggagtctccaaaggcattttgtagggagttaatgattgctagttctcttcacaacccatacattgttcctctggtgggtttttgtattgatccagaggagggtttctttttggtatacaagtatgtatctggtggaagtttagagcggtatttacatgataagaagaagaggggagtgaagggtggtccagtacttccatggtctacgcggtataaggtggctgtaggcattgctgattcaatcgggtacttgcattatggcactgagaggtgtgttgttcacagggacatcaaaccctccaacattcttctctcatccaaaaagacgcccaagttgtgtgactttggtttagctacatggactcctgcaccttctgtacctttcctttgtaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="81" stop="1714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="381" g_stop="483" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="484" i_stop="710" i_length="227">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="711" g_stop="968" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="361" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="969" i_stop="1059" i_length="91">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1060" g_stop="1235" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="537" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1236" i_stop="1352" i_length="117">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1353" g_stop="1414" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="599" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E269195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="381" e_stop="483"/>
          <exon e_start="711" e_stop="968"/>
          <exon e_start="1060" e_stop="1235"/>
          <exon e_start="1353" e_stop="1414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAATTCAATCACTTGAGAGGAGTATTTCTCCTGTGACTCATTCTTTAATTAGGTTTACCTATCCTGAGATTGCTTCTGCTACTAGGAATTTTTCAAAAGGTATTCAATTGTTTATTTCAATTTCTTAAGTTTTTTCACTTTCTCCTGTTTGAAAGAGAAATTTGTGTCCGAGGATCAATTGAAAACAACCTCTCTACCTCCCAAGGCAGGGGTAAGGTTTGTGTTTACTCTACCCTTATTGGACCCCACTTGTGGAATTATATTGGGTGTGTTGTTGTTGAAAGAGATATTCATGTGATGTTGATTGCTTTTCTTGAATTGATTAGGTAGAGTTTTGGGAAGAGGAGCATTGAGCTATGTTTTCAGAGGAAGAGTTGGATTTATGAGGACTACTGTTGCGATTAAGCGGTTAGATAGGGAAGACAAGGAGTCTCCAAAGGCATTTTGTAGGGAGTTAATGATTGCTAGTTCTCTTCACAACCCATACATTGTTCCTCTGGTGGGTTTTTGTATTGATCCAGAGGAGGGTTTCTTTTTGGTATACAAGTATGTATCTGGTGGAAGTTTAGAGCGGTATTTACATGGTGAGAATACTTGGTTCCCTTTTGTTCTTAATAAGGTCATTATTATTTCAGTTTTTCTTTGGTACTAATTTAGATAGAATTTCATTCACAGATAAGAAGAAGAGGGGAGTGAAGGGTGGTCCAGTACTTCCATGGTCTACGCGGTATAAGGTGGCTGTAGGCATTGCTGATTCAATCGGGTACTTGCATTATGGCACTGAGAGGTGTGTTGTTCACAGGGACATCAAACCCTCCAACATTCTTCTCTCATCCAAAAAGACGCCCAAGGTAATGAAAGGAACATTCATATTTAACAGCTCAAATTGGTTATTCACGCATATCTGCTAGTGAACAGGTTGTTGTTTGATAGATTCTGTGTTTTAATCCTTTCCTTAATATATGCAGTTGTGTGACTTTGGTTTAGCTACATGGACTCCTGCACCTTCTGTACCTTTCCTTTGTAAAAC</genome_strand>
        <mrna_strand>AGGAAAATTCAATCACTTGAGAGGAGTATTTCTCCTGTGACTCATTCTTTAATTAGGTTTACCTATCCTGAGATTGCTTCTGCTACTAGGAATTTTTCAAAAG...................................................................................................................................................................................................................................GTAGAGTTTTGGGAAGAGGAGCATTGAGCTATGTTTTCAGAGGAAGAGTTGGATTTATGAGGACTACTGTTGCGATTAAGCGGTTAGATAGGGAAGACAAGGAGTCTCCAAAGGCATTTTGTAGGGAGTTAATGATTGCTAGTTCTCTTCACAACCCATACATTGTTCCTCTGGTGGGTTTTTGTATTGATCCAGAGGAGGGTTTCTTTTTGGTATACAAGTATGTATCTGGTGGAAGTTTAGAGCGGTATTTACATG...........................................................................................ATAAGAAGAAGAGGGGAGTGAAGGGTGGTCCAGTACTTCCATGGTCTACGCGGTATAAGGTGGCTGTAGGCATTGCTGATTCAATCGGGTACTTGCATTATGGCACTGAGAGGTGTGTTGTTCACAGGGACATCAAACCCTCCAACATTCTTCTCTCATCCAAAAAGACGCCCAAG.....................................................................................................................TTGTGTGACTTTGGTTTAGCTACATGGACTCCTGCACCTTCTGTACCTTTCCTTTGTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547279" ref_strand="+" ref_description="SGN-E547279 [TUS-71-B7](-)">
      <seq>aaaaacaaaaactcagaccaactttgcctacattataaccatcacaaaagaaaaaggcaaagaagaaatcaaagaatggctgaagatccacaagacgtagccgatcgcgaactagtcttcaagcgttttgatttaaatggtgatgggcaaatttcttcagcagaacttggagagaccttgaagatgctaggctctgtaacctctgaagaagtccagtatatgatggctgaacttgatactgatggggatggcttcatttcttttaaagaattcgaagaatttgctcgagccaatagaggtttgatcaaggatgttgctaaagtattctagctttcttgatgcacaaacttaaccattagaaaccgatttagggtgggttttgcaggttcaactgaatccattgctttcagctcgaactatgtatacgtatgcaaaatatgtttaaaatgtatacatacaataaaatcatactcatttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="4443" stop="3361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4143" g_stop="3654" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E547279" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4143" e_stop="3654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCGCAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGGCCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTTAGGTGGTTTTTGCAGGTTCAAACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGAATGCAACATATGTTTAAAATGTATACATATAATAAAATCATACTCATTTTGAAATCATCGA</genome_strand>
        <mrna_strand>AAAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCACAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGACCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTAGGGTGGGTTTTGCAGGTTC-AACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGTATGCAAAATATGTTTAAAATGTATACATACAATAAAATCATACTCA-TTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547280" ref_strand="+" ref_description="SGN-E547280 [TUS-71-B7]">
      <seq>aaaaacaaaaactcagaccaactttgcctacattataaccatcacaaaagaaaaaggcaaagaagaaatcaaagaatggctgaagatccacaagacgtagccgatcgcgaactagtcttcaagcgttttgatttaaatggtgatgggcaaatttcttcagcagaacttggagagaccttgaagatgctaggctctgtaacctctgaagaagtccagtatatgatggctgaacttgatactgatggggatggcttcatttcttttaaagaattcgaagaatttgctcgagccaatagaggtttgatcaaggatgttgctaaagtattctagctttcttgatgcacaaacttaaccattagaaaccgatttagggtgggttttgcaggttcaactgaatccattgctttcagctcgaactatgtatacgtatgcaaaatatgtttaaaatgtatacatacaataaaatcatactcattttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="4443" stop="3361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4143" g_stop="3654" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E547280" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4143" e_stop="3654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCGCAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGGCCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTTAGGTGGTTTTTGCAGGTTCAAACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGAATGCAACATATGTTTAAAATGTATACATATAATAAAATCATACTCATTTTGAAATCATCGA</genome_strand>
        <mrna_strand>AAAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCACAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGACCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTAGGGTGGGTTTTGCAGGTTC-AACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGTATGCAAAATATGTTTAAAATGTATACATACAATAAAATCATACTCATTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362382" ref_strand="+" ref_description="SGN-E362382 [cLPP-10-B4]">
      <seq>aaaacaaaaactcagaccaactttgcctacattataaccatcacaaaagaaaaaggcaaagaagaaatcaaagaatggctgaagatccacaagacgtagccgatcgcgaactagtcttcaagcgttttgatttaaatggtgatgggcaaatttcttcagcagaacttggagagaccttgaagatgctaggctctgtaacctctgaagaagtccagtatatgatggctgaacttgatactgatggggatggcttcatttcttttaaagaattcgaagaatttgctcgagccaatagaggtttgatcaaggatgttgctaaagtattctagctttcttgatgcacaaacttaaccattagaaaccgatttagggtgggttttgcaggttcaactgaatccattgctttcagctcgaactatgtatacgtatgcaaaatatgtttaaaatgtatacatacaataaaatcatactcattttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="4442" stop="3361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4142" g_stop="3654" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E362382" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4142" e_stop="3654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCGCAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGGCCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTTAGGTGGTTTTTGCAGGTTCAAACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGAATGCAACATATGTTTAAAATGTATACATATAATAAAATCATACTCATTTTGAAATCATCGA</genome_strand>
        <mrna_strand>AAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCACAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGACCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTAGGGTGGGTTTTGCAGGTTC-AACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGTATGCAAAATATGTTTAAAATGTATACATACAATAAAATCATACTCATTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395292" ref_strand="+" ref_description="SGN-E395292 [TUS-14-P3](-)">
      <seq>ttccatgtgggccatctgcagaaagtgctagagaaggaatccttagcatatggaatactgctgatataattaagataagtgaagaagagatttcgtttttgacacaaggagaagatccttatgatgataatgttgtccgtaagttgtaccatccaaacctcaagttactcctcgtcacagaaggtccagaaggttgccgatattacaccaaggatttcagtggacgagttaagggtataaaggtggacgctgtggacaccacaggtgctggagatgcttttgtagccggaatattgtcacagctagcatctgatgtctctctgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagttcttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttctgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaagatcaatgttcaattcttttgggtaatgcattggtttgattcagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="4137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="6614" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6471" g_stop="6334" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="212" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5610" g_stop="5494" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="329" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4805" g_stop="4438" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="697" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="707"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E395292" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="6614"/>
          <exon e_start="6471" e_stop="6334"/>
          <exon e_start="5610" e_stop="5494"/>
          <exon e_start="4805" e_stop="4438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAGGTACTTTGTTGCAAATGTCCAATGTAAAATTTTACTACTTGTTAATGGAAATATATTTTATCTTGCAAGAGAGTCGGTCTGGAGAGTCTGAATTTTCATATGCAATGTTACCTATGATGTTTCAGCTGCTTGTTATCAACAGATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAGGTGAGCTTCTAAGATGTGGTAAAACTCAGCGTTATAAATATTATTCAACTCTGCTGCATGCCTGTTTGTTCTTCTAGACAAACTGTAATTGTTACTGCATCCCACTCTACACAATTGATGTGCTTAAGCAAATGATGTGGTAATTCTTTATCATGTAGTTGAGAAATCTCTGTATTTGTTCCTTTATGTCTTCAGATGTAAAATTCATCTTTCATAACTTCTTAGACTATTTCAACATTTATTAAATATACAATCTGCTGTTGGGTTACCAAGATTTGTGCGCATGGATGCTTTGCCTTTTTAACCAGTCGATCCCTAGCTGAACAAGTATATGATTATCTATGTTAGAGTTGATTGGCTTGTTGCTTTATTAATCTAGAATCAATATAGATTCATCACAGAAGGACTTAATCAATTGCTCTGTTATACCTGTAAAAATATTACTGATAATAATCCCTTGCTCTCTCTTCATCAAAAAAAAGTCCCTTGCTCTCTGAAGTTTATTTTAGAAGATTCTTTATTCGGTTTTCTTTTGTGATACATGATCAGGAAACAGAATGACTACTGTTTCTTCTATTTTCTTGAAAAGCTAATTAGAGGTTGTCTGATTAGGAATACTAGAATTTAAGCTGATGTTGCATACCCAGATTTGCCAGATACCACTATATATGAAAGGTAAAAAGAAAAGAGTTCTCTGATGTTGCTTTGAATCATGAAAAATAGGATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</genome_strand>
        <mrna_strand>TTCCATGTGGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG..............................................................................................................................................ATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217374" ref_strand="+" ref_description="SGN-E217374 [cLEL-21-D5](-)">
      <seq>gccggaatattgtcacagctagcatctgatgtctctctgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagttcttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttctgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaagatcaatgttcaattcttttgggtaatgcattggtttgattcagtcatacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="5838" stop="4133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5538" g_stop="5494" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4805" g_stop="4438" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="413" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E217374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5538" e_stop="5494"/>
          <exon e_start="4805" e_stop="4438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</genome_strand>
        <mrna_strand>GCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397684" ref_strand="-" ref_description="SGN-E397684 [TUS-46-B3]">
      <seq>tcacagaaggtccagaaggttgccgatattacaccaaggatttcagtggacgagttaagggtataaaggtggacgctgtggacaccacaggtgctggagatgcttttgtagccggaatattgtcacagctagcatttgatgtctttttgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgaaggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagtttttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttttgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaagatcaatgttcaatttttttgggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="6671" stop="4158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6371" g_stop="6334" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5610" g_stop="5494" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="155" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4805" g_stop="4459" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="502" r_length="347" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="526"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E397684" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397684" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6371" e_stop="6334"/>
          <exon e_start="5610" e_stop="5494"/>
          <exon e_start="4805" e_stop="4459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAGGTGAGCTTCTAAGATGTGGTAAAACTCAGCGTTATAAATATTATTCAACTCTGCTGCATGCCTGTTTGTTCTTCTAGACAAACTGTAATTGTTACTGCATCCCACTCTACACAATTGATGTGCTTAAGCAAATGATGTGGTAATTCTTTATCATGTAGTTGAGAAATCTCTGTATTTGTTCCTTTATGTCTTCAGATGTAAAATTCATCTTTCATAACTTCTTAGACTATTTCAACATTTATTAAATATACAATCTGCTGTTGGGTTACCAAGATTTGTGCGCATGGATGCTTTGCCTTTTTAACCAGTCGATCCCTAGCTGAACAAGTATATGATTATCTATGTTAGAGTTGATTGGCTTGTTGCTTTATTAATCTAGAATCAATATAGATTCATCACAGAAGGACTTAATCAATTGCTCTGTTATACCTGTAAAAATATTACTGATAATAATCCCTTGCTCTCTCTTCATCAAAAAAAAGTCCCTTGCTCTCTGAAGTTTATTTTAGAAGATTCTTTATTCGGTTTTCTTTTGTGATACATGATCAGGAAACAGAATGACTACTGTTTCTTCTATTTTCTTGAAAAGCTAATTAGAGGTTGTCTGATTAGGAATACTAGAATTTAAGCTGATGTTGCATACCCAGATTTGCCAGATACCACTATATATGAAAGGTAAAAAGAAAAGAGTTCTCTGATGTTGCTTTGAATCATGAAAAATAGGATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTA</genome_strand>
        <mrna_strand>TCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATTTGATGTCTTTTTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGAAGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTTTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTTTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTTTTTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267799" ref_strand="-" ref_description="SGN-E267799 [cLEI-12-P12]">
      <seq>cccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagttcttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttctgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaagatcaatgttcaattcttttgggtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="5083" stop="4158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4783" g_stop="4459" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="348"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E267799" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267799" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4783" e_stop="4459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTA</genome_strand>
        <mrna_strand>CCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223895" ref_strand="+" ref_description="SGN-E223895 [cLEL-19-E23](-)">
      <seq>tgcttttgtagccggaatattgtcacagctagcatctgatgtctctctgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccctgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagttcttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttctgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="5848" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5548" g_stop="5494" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4805" g_stop="4483" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="378" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="403"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E223895" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5548" e_stop="5494"/>
          <exon e_start="4805" e_stop="4483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAG</genome_strand>
        <mrna_strand>TGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCCTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223783" ref_strand="+" ref_description="SGN-E223783 [cLEL-19-E23](-)">
      <seq>ctgatgtctctctgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacgccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctccttgcatagttcttgtagggtaaaagaatattgtataaccacattagccaataatcgagaataatttctgataaatatgtggtagttcataacccacattattaagcacatgtatttattcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="5813" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5513" g_stop="5494" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4805" g_stop="4483" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="343" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E223783" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5513" e_stop="5494"/>
          <exon e_start="4805" e_stop="4483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAG</genome_strand>
        <mrna_strand>CTGATGTCTCTCTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747493" ref_strand="+" ref_description="SGN-E747493 [GI|38604455]">
      <seq>ttcattgatttctccgctgctactatcttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctgttttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttctcttcctagaagatgcgctgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaagaggatgaacttgatttagagttgatcaggaaggcaaaagtttttcattatggttccataagtctgattacggagccatgcaaatcagcccatattgcagctgcaaaagctgcaaaggatgctggtgtgatcttatcctatgatcccaatttgaggcttccattgtggccatctgcagaaagtgctagagaaggaatccttagcatatggaatactgctgatataattaagataagtgaagaagagatttcgtttttgacacaaggagaagatccttatgatgataatgttgtccgtaagttgtaccatccaaacctcaagttactcctcgtcacagaaggtccagaaggttgccgatattacaccaaggatttcagtggacgagttaagggtataaaggtggacgctgtggacaccacaggtgctggagatgcttttgtagccggaatattgtcacagctagcatctgatgtctctctgcttcaggatgagggcaagcttcgagatgcccttagttttgctaatgcctgtggtgcattgaccgtgatggagagaggagcaattccagctttgcctacaaaagaagtagtgttgaacaccttgctcaagtcagttgcataatatccatccgacctattaatcggttgccatttaaatgcacttgcaaaaagatctccatgtgctgccttgcatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9405" stop="4296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9105" g_stop="8716" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="593" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7340" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="806" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6811" g_stop="6614" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1004" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6471" g_stop="6334" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1142" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5610" g_stop="5494" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1143" r_stop="1259" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4805" g_stop="4596" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1260" r_stop="1470" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E747493" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1478</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9105" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7340"/>
          <exon e_start="6811" e_stop="6614"/>
          <exon e_start="6471" e_stop="6334"/>
          <exon e_start="5610" e_stop="5494"/>
          <exon e_start="4805" e_stop="4596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAGGTAATGAGGTTCTTTTATCCTTGAGATATAAGTAGTAGTTCATAGTTTCATTATAGCAAAAGAATAAAGAGGGACGAGAAGAGCAAAATATAGGATCATAATTTGAAACTGAAATTGGTTATGGTTTTTCATGAGATACCTCCAGTCATAAGACCTTCTGTGTTCATCCTCTTTGTTACTTCTGCTAAGAGTAAGTTACTTATTTATATGACTATTGAATATATTAAAAACCTTATGCAGTTCATGATTTGGTTCAAGAGTACCTTCCAATCCAAATCTTCAGATTTTTAAAGACCATCTGATTTGAGAATGTATGAGCATTTTGTATGCTTTCTGGAAAGCATGTTATTCTAGTAGTCCGCCAAACCTTAACAATACTTCTATACAATGTTGTTTTCCTTATTGCAACAGTTTGATCATGATACTTAACATTTCTTCTGCTGTTTTTGGTGTGGACTCTTACTAGTAAATTATACTTAGATGGTCAATTTGATAGTGATACCCAATGATTCCTATTCCGTATGACAGGCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAGGTACTTTGTTGCAAATGTCCAATGTAAAATTTTACTACTTGTTAATGGAAATATATTTTATCTTGCAAGAGAGTCGGTCTGGAGAGTCTGAATTTTCATATGCAATGTTACCTATGATGTTTCAGCTGCTTGTTATCAACAGATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAGGTGAGCTTCTAAGATGTGGTAAAACTCAGCGTTATAAATATTATTCAACTCTGCTGCATGCCTGTTTGTTCTTCTAGACAAACTGTAATTGTTACTGCATCCCACTCTACACAATTGATGTGCTTAAGCAAATGATGTGGTAATTCTTTATCATGTAGTTGAGAAATCTCTGTATTTGTTCCTTTATGTCTTCAGATGTAAAATTCATCTTTCATAACTTCTTAGACTATTTCAACATTTATTAAATATACAATCTGCTGTTGGGTTACCAAGATTTGTGCGCATGGATGCTTTGCCTTTTTAACCAGTCGATCCCTAGCTGAACAAGTATATGATTATCTATGTTAGAGTTGATTGGCTTGTTGCTTTATTAATCTAGAATCAATATAGATTCATCACAGAAGGACTTAATCAATTGCTCTGTTATACCTGTAAAAATATTACTGATAATAATCCCTTGCTCTCTCTTCATCAAAAAAAAGTCCCTTGCTCTCTGAAGTTTATTTTAGAAGATTCTTTATTCGGTTTTCTTTTGTGATACATGATCAGGAAACAGAATGACTACTGTTTCTTCTATTTTCTTGAAAAGCTAATTAGAGGTTGTCTGATTAGGAATACTAGAATTTAAGCTGATGTTGCATACCCAGATTTGCCAGATACCACTATATATGAAAGGTAAAAAGAAAAGAGTTCTCTGATGTTGCTTTGAATCATGAAAAATAGGATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAGGTATTGCCTTAATGCCTTTTGTATTAAAGCGAATTATGTTCTGTAGTTTTAATGTTCCATTATCCTGCATTCTGTTGGCTACCACTTTACATTTCTCATTGTGTAGATGGTTTCTCATGTCATGTTATCTAATGAGCAAAGAAAAATTGACACTGTCTATAGTTTGTTCACTAGGTGTGTATCTTCAGTATAAGTACATTAAAGGACCTATGTGATTTACTTGTAGTGACTATATTTTACTGTGTCATTGAAACCTCTTATAGTTAATACCCTAGATAATGTCACTCACATATGCAATCCAGTGATATAAGGCAGCTGAAAGATCACAAGTTTAACAACTGTCATCTTTGATGAAGCTAAGACCACTACTAAGACAATGTCGCATCCTTGTTCTCTTGCTGTAGCTACTTCTGAAACAAAAACTGAAGGTGCTGAACCAATTAATTTGAATTCTCAATGTAAGATTGAAAAGTCTCATATCGGTGGTTAATGATATGAGTGGTATACTGATATGGACTTAGGCAATCCTCCTCTCATGAGCTAGCTTTTGGGGTTGAGTTAAAGCCCAAGACCCATTTCCTTACTCTCAAACATCAACCTGTCTTTCCATTTGGTGTTGAACTTTCTTTATACTTTAAAGTCAAAGCACAGATCCCTTAAATGCTAATTCTGAATCTGATTTCTTTAGGATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCT-CCTTGCATAGTT</genome_strand>
        <mrna_strand>TTCATTGATTTCTCCGCTGCTACTATCTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGTTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAA--GC---GCTTT--G-CTTT-CTCTTCCTAGAAGATGCGCTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG..............................................................................................................................................ATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACACCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTGCCTTGCATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706301" ref_strand="+" ref_description="SGN-E706301 [FA29CC12]">
      <seq>gagggctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttaacatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaagaggatgaacttgatttagagttgatcacgaaggcaaaagtttttcattatggttccataagtctgattacggagccatgcaaatcagcccatattgcagctgcaaaagctgcaaaggatgctggtgtgatcttatcctatgatcccaatttgaggcttccattgtggccatctgcagaaagtgctagagaaggaatccttagcatatggaatactgctgatataattaagataagtgaagaagagatttcgtttttgacacaaggagaagatccttatgatgataatgttgtccgtaagttgtaccatccaaacctcaagttactcctcgtcacagaaggtccagaaggttgccgatattacaccaaggatttcagtggaccagttaagggtataaaggtggacgctgtggacaccacaggtgctggagatgcttttgtatccggaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="8819" stop="5228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8523" g_stop="8381" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7552" g_stop="7340" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="356" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6811" g_stop="6614" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="554" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6471" g_stop="6334" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="692" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5610" g_stop="5528" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="775" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E706301" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8523" e_stop="8381"/>
          <exon e_start="7552" e_stop="7340"/>
          <exon e_start="6811" e_stop="6614"/>
          <exon e_start="6471" e_stop="6334"/>
          <exon e_start="5610" e_stop="5528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAGGTAATGAGGTTCTTTTATCCTTGAGATATAAGTAGTAGTTCATAGTTTCATTATAGCAAAAGAATAAAGAGGGACGAGAAGAGCAAAATATAGGATCATAATTTGAAACTGAAATTGGTTATGGTTTTTCATGAGATACCTCCAGTCATAAGACCTTCTGTGTTCATCCTCTTTGTTACTTCTGCTAAGAGTAAGTTACTTATTTATATGACTATTGAATATATTAAAAACCTTATGCAGTTCATGATTTGGTTCAAGAGTACCTTCCAATCCAAATCTTCAGATTTTTAAAGACCATCTGATTTGAGAATGTATGAGCATTTTGTATGCTTTCTGGAAAGCATGTTATTCTAGTAGTCCGCCAAACCTTAACAATACTTCTATACAATGTTGTTTTCCTTATTGCAACAGTTTGATCATGATACTTAACATTTCTTCTGCTGTTTTTGGTGTGGACTCTTACTAGTAAATTATACTTAGATGGTCAATTTGATAGTGATACCCAATGATTCCTATTCCGTATGACAGGCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAGGTACTTTGTTGCAAATGTCCAATGTAAAATTTTACTACTTGTTAATGGAAATATATTTTATCTTGCAAGAGAGTCGGTCTGGAGAGTCTGAATTTTCATATGCAATGTTACCTATGATGTTTCAGCTGCTTGTTATCAACAGATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAGGTGAGCTTCTAAGATGTGGTAAAACTCAGCGTTATAAATATTATTCAACTCTGCTGCATGCCTGTTTGTTCTTCTAGACAAACTGTAATTGTTACTGCATCCCACTCTACACAATTGATGTGCTTAAGCAAATGATGTGGTAATTCTTTATCATGTAGTTGAGAAATCTCTGTATTTGTTCCTTTATGTCTTCAGATGTAAAATTCATCTTTCATAACTTCTTAGACTATTTCAACATTTATTAAATATACAATCTGCTGTTGGGTTACCAAGATTTGTGCGCATGGATGCTTTGCCTTTTTAACCAGTCGATCCCTAGCTGAACAAGTATATGATTATCTATGTTAGAGTTGATTGGCTTGTTGCTTTATTAATCTAGAATCAATATAGATTCATCACAGAAGGACTTAATCAATTGCTCTGTTATACCTGTAAAAATATTACTGATAATAATCCCTTGCTCTCTCTTCATCAAAAAAAAGTCCCTTGCTCTCTGAAGTTTATTTTAGAAGATTCTTTATTCGGTTTTCTTTTGTGATACATGATCAGGAAACAGAATGACTACTGTTTCTTCTATTTTCTTGAAAAGCTAATTAGAGGTTGTCTGATTAGGAATACTAGAATTTAAGCTGATGTTGCATACCCAGATTTGCCAGATACCACTATATATGAAAGGTAAAAAGAAAAGAGTTCTCTGATGTTGCTTTGAATCATGAAAAATAGGATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATT</genome_strand>
        <mrna_strand>GAGGGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAACATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCACGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG..............................................................................................................................................ATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGTGGACCAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTATCCGGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252430" ref_strand="+" ref_description="SGN-E252430 [cLEG-12-F20]">
      <seq>tcggtgagaattttaatttatgttctatcgtaacccaagtgcggggtgtgttgcttcaagaggatgaactcgatttacagttgatcaggaaggcaaaagtttttcattatggatccataagtctgattacggagccatgcaaatcagcccatattgcagctgcaaaagctgcaaaggatgctggtgtgatcttatcctatgatcccaatttgaggcttccattgtggccatctgcagaaagtgctatagaaggaatccttagcatatggaatactgctgatataattaagataagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="7730" stop="6311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7431" g_stop="7340" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6811" g_stop="6614" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="290" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6471" g_stop="6464" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="298" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E252430" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7431" e_stop="7340"/>
          <exon e_start="6811" e_stop="6614"/>
          <exon e_start="6471" e_stop="6464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGC-TGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAGGTAATGAGGTTCTTTTATCCTTGAGATATAAGTAGTAGTTCATAGTTTCATTATAGCAAAAGAATAAAGAGGGACGAGAAGAGCAAAATATAGGATCATAATTTGAAACTGAAATTGGTTATGGTTTTTCATGAGATACCTCCAGTCATAAGACCTTCTGTGTTCATCCTCTTTGTTACTTCTGCTAAGAGTAAGTTACTTATTTATATGACTATTGAATATATTAAAAACCTTATGCAGTTCATGATTTGGTTCAAGAGTACCTTCCAATCCAAATCTTCAGATTTTTAAAGACCATCTGATTTGAGAATGTATGAGCATTTTGTATGCTTTCTGGAAAGCATGTTATTCTAGTAGTCCGCCAAACCTTAACAATACTTCTATACAATGTTGTTTTCCTTATTGCAACAGTTTGATCATGATACTTAACATTTCTTCTGCTGTTTTTGGTGTGGACTCTTACTAGTAAATTATACTTAGATGGTCAATTTGATAGTGATACCCAATGATTCCTATTCCGTATGACAGGCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAGGTACTTTGTTGCAAATGTCCAATGTAAAATTTTACTACTTGTTAATGGAAATATATTTTATCTTGCAAGAGAGTCGGTCTGGAGAGTCTGAATTTTCATATGCAATGTTACCTATGATGTTTCAGCTGCTTGTTATCAACAGATAAGTGA</genome_strand>
        <mrna_strand>TCGGTG-AGAATTTTAATTTATGTTCTATCGTAACCCAAGTGCGGGGTGTGTTGCTTCAAGAGGATGAACTCGATTTACAGTTGATCAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTTTTCATTATGGATCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTATAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG..............................................................................................................................................ATAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702474" ref_strand="+" ref_description="SGN-E702474 [FA18DC10]">
      <seq>ctagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaagaggatgaacttgatttagagttgatcaggaaggcaaaagtttttcattatggttccataagtctgattacggagccatgcaaatcagcccatattgcagctgcaaaagctgcaaaggatgctggtgtgatcttatcctatgatcccaatttgaggcttccattgtggccatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9326" stop="6369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9026" g_stop="8716" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="523" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7340" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="736" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6811" g_stop="6669" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="879" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E702474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9026" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7340"/>
          <exon e_start="6811" e_stop="6669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAGGTAATGAGGTTCTTTTATCCTTGAGATATAAGTAGTAGTTCATAGTTTCATTATAGCAAAAGAATAAAGAGGGACGAGAAGAGCAAAATATAGGATCATAATTTGAAACTGAAATTGGTTATGGTTTTTCATGAGATACCTCCAGTCATAAGACCTTCTGTGTTCATCCTCTTTGTTACTTCTGCTAAGAGTAAGTTACTTATTTATATGACTATTGAATATATTAAAAACCTTATGCAGTTCATGATTTGGTTCAAGAGTACCTTCCAATCCAAATCTTCAGATTTTTAAAGACCATCTGATTTGAGAATGTATGAGCATTTTGTATGCTTTCTGGAAAGCATGTTATTCTAGTAGTCCGCCAAACCTTAACAATACTTCTATACAATGTTGTTTTCCTTATTGCAACAGTTTGATCATGATACTTAACATTTCTTCTGCTGTTTTTGGTGTGGACTCTTACTAGTAAATTATACTTAGATGGTCAATTTGATAGTGATACCCAATGATTCCTATTCCGTATGACAGGCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGC</genome_strand>
        <mrna_strand>CTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395274" ref_strand="-" ref_description="SGN-E395274 [TUS-46-B3](-)">
      <seq>acctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaagaggatgaacttgatttagagttgatcaggaaggcaaaagtttttcattatggttccataagtctgattacggagccatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9294" stop="6462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8995" g_stop="8716" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="492" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7340" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="705" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6811" g_stop="6762" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="755" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E395274" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395274" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8995" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7340"/>
          <exon e_start="6811" e_stop="6762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAGGTAATGAGGTTCTTTTATCCTTGAGATATAAGTAGTAGTTCATAGTTTCATTATAGCAAAAGAATAAAGAGGGACGAGAAGAGCAAAATATAGGATCATAATTTGAAACTGAAATTGGTTATGGTTTTTCATGAGATACCTCCAGTCATAAGACCTTCTGTGTTCATCCTCTTTGTTACTTCTGCTAAGAGTAAGTTACTTATTTATATGACTATTGAATATATTAAAAACCTTATGCAGTTCATGATTTGGTTCAAGAGTACCTTCCAATCCAAATCTTCAGATTTTTAAAGACCATCTGATTTGAGAATGTATGAGCATTTTGTATGCTTTCTGGAAAGCATGTTATTCTAGTAGTCCGCCAAACCTTAACAATACTTCTATACAATGTTGTTTTCCTTATTGCAACAGTTTGATCATGATACTTAACATTTCTTCTGCTGTTTTTGGTGTGGACTCTTACTAGTAAATTATACTTAGATGGTCAATTTGATAGTGATACCCAATGATTCCTATTCCGTATGACAGGCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAA</genome_strand>
        <mrna_strand>ACCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721235" ref_strand="+" ref_description="SGN-E721235 [FC13AG01]">
      <seq>gcggccaaatcggccgaattattgatttctccgctcctattattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcaaatcaaatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccaaaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaagaggatgaacttgatttagagttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9408" stop="7045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9102" g_stop="8716" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="407" r_length="387" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="619" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7345" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="827" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E721235" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9102" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCA</genome_strand>
        <mrna_strand>ATTGATTTCTCCGCTCCTATTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAAATCAAATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAAAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268453" ref_strand="+" ref_description="SGN-E268453 [cLEI-13-J20]">
      <seq>taatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgcttcaaaaagatgaacttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9292" stop="7056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8992" g_stop="8716" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="489" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7356" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="686" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E268453" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8992" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTT</genome_strand>
        <mrna_strand>TAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAAAAGATGAACTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262038" ref_strand="+" ref_description="SGN-E262038 [cLEG-58-D18]">
      <seq>agggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccagtgctgatatgttgcttcaagaagatgaacttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9348" stop="7057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9048" g_stop="8716" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="545" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7357" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="740" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E262038" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9048" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATT</genome_strand>
        <mrna_strand>AGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCC-AGTGCTGATATGTTGCTTCAAGAAGATGAACTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724142" ref_strand="+" ref_description="SGN-E724142 [FC23AG06]">
      <seq>gatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9399" stop="7078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9099" g_stop="8716" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="596" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7378" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="771" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E724142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9099" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGC</genome_strand>
        <mrna_strand>GATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320026" ref_strand="+" ref_description="SGN-E320026 [cTOB-21-C7]">
      <seq>attgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaccccagtgctgatatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9362" stop="7078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9062" g_stop="8716" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="559" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7378" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="733" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E320026" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9062" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGC</genome_strand>
        <mrna_strand>ATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGT-ACCCCAGTGCTGATATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260695" ref_strand="+" ref_description="SGN-E260695 [cLEG-54-D17]">
      <seq>ccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgctttagcatttgtaacactgagaaaggatggagaacgtgaatttatgttctatcgtaacccaagtgctgatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9376" stop="7079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9076" g_stop="8716" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="573" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7379" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="747" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E260695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9076" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTG</genome_strand>
        <mrna_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333135" ref_strand="+" ref_description="SGN-E333135 [cTOD-19-B4]">
      <seq>cagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccangtgctcgcactgctttagcatttgtaacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9370" stop="7136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9070" g_stop="8716" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="567" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7436" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="684" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E333135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9070" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTG</genome_strand>
        <mrna_strand>CAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCANGTGCTCGCACTGCTTTAGCATTTGTAACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254181" ref_strand="+" ref_description="SGN-E254181 [cLEG-34-O16]">
      <seq>cctgatgtaactgtattttaggttttaattgtgaaataccagtttctcaaatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagaatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatccangtgctcgcactgctttagcatttgtaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9260" stop="7137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8960" g_stop="8716" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="458" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7437" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="574" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E254181" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8960" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAG-ATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACT</genome_strand>
        <mrna_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACCAGTTTCTCAAATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGAATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCANGTGCTCGCACTGCTTTAGCATTTGTAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395293" ref_strand="+" ref_description="SGN-E395293 [TUS-14-P3]">
      <seq>ccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgagggagaacaatgtcaacagtgatggtatgcgatttgatccaggtgctcgcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9392" stop="7155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9092" g_stop="8716" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="589" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7455" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="687" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E395293" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9092" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGC</genome_strand>
        <mrna_strand>CCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAGGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251138" ref_strand="+" ref_description="SGN-E251138 [cLEG-10-C22]">
      <seq>ccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9286" stop="7171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8986" g_stop="8716" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="483" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7471" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="565" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E251138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8986" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATC</genome_strand>
        <mrna_strand>CCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551342" ref_strand="+" ref_description="SGN-E551342 [TUS-54-M23]">
      <seq>cctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgccgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaaacatgtcaacagtgatggtatgcgatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9260" stop="7172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8960" g_stop="8716" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="457" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7472" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="538" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E551342" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8960" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGAT</genome_strand>
        <mrna_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCCGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAAACATGTCAACAGTGATGGTATGCGATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688783" ref_strand="+" ref_description="SGN-E688783 [t3_tus_54_M23]">
      <seq>cctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtatgcgatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9260" stop="7172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8960" g_stop="8716" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="457" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7472" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="538" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E688783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8960" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGAT</genome_strand>
        <mrna_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724076" ref_strand="+" ref_description="SGN-E724076 [FC22DH12]">
      <seq>attttagttgntgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcaaatcaaatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccaaaagcgctttgctttcaatctttcctcttcctaaaaaatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaaaacaaatttggttacatgcttgctgagattttgaaggagaacaatgtcaacagtgatggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9284" stop="7182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8984" g_stop="8716" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="481" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7482" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="552" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E724076" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8984" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTAT</genome_strand>
        <mrna_strand>ATTTTAGTTGNTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAAATCAAATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAAAAGCGCTTTGCTTTCAATCTTTCCTCTTCCTAAAAAATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAAACAAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250393" ref_strand="+" ref_description="SGN-E250393 [cLEG-6-M22]">
      <seq>agaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaagggaagggnaaaagcattgccagtgacaatgggctagtggagaagatgaattttcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9369" stop="7217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9069" g_stop="8716" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8599" i_length="117">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8598" g_stop="8381" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="569" r_length="215" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7517" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="605" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E250393" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9069" e_stop="8716"/>
          <exon e_start="8598" e_stop="8381"/>
          <exon e_start="7552" e_stop="7517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGG-AAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAG</genome_strand>
        <mrna_strand>AGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG.....................................................................................................................GGAAGGGNAAAAGCATTGCC-AGTGACAATGGGCTAGTGGAGAA-GATGAAT-TT-TCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328626" ref_strand="+" ref_description="SGN-E328626 [cTOC-23-H16]">
      <seq>aaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcattttaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtgaagacgaatttggttacatgcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9431" stop="7219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9131" g_stop="8716" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="628" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7519" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="662" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E328626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9131" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTG</genome_strand>
        <mrna_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTTAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317986" ref_strand="+" ref_description="SGN-E317986 [cTOA-30-H19]">
      <seq>ttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagtttcattggcaaggttggtgaagacgaatttggttacatgcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9426" stop="7219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9126" g_stop="8716" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8381" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="622" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7552" g_stop="7519" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="656" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E317986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9126" e_stop="8716"/>
          <exon e_start="8592" e_stop="8381"/>
          <exon e_start="7552" e_stop="7519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAGGTATAATTTTGCAAAACTACTTTTTTTTTACCTTCTATATGAATTCGATGTGCTAAACGTAGGTTTGAATGAATCTATAACAGTAGATAAGTTCATTGAAGTTCAACAAGTGTTTAGACAGTTAGTTTTTCGGTCAAGTACATGTATGATCTTGAAGTTAGGCTACTTATCTTGACTATTAGGACCAATTCCAGGCTGTAGGAGGAGGAAACTCTTTGTTGTTGTTTAGTTTCCTCTATTCAAAACATATGACAGTGTCTGGTTACGGAAATAACATTAGAAGCTGCAAGACAATTCACTTAGTTGGAACAATCAATCTTTAATGCATGGTTGAAATTTTGTTATATCTGAATAGAAATCTGAAACTTGCTGTGGAAACATCAGTTGCTCCAACGTATCCCGTGTACCATGGTGATCCGACATCTAATGTTATGTGCTTGTCAAATACCTATTTCTTTGGCATACTAATTACAATAATGATATCATATATCTTAGTCTATATCATTAATGAAGAACAGCTTTGCTCTCATCCTTGACTCACTACTCTGAACTACTGCACTCAAATCAGGAAACTCATCTTAATATGCAGCAGGGTCATCTTTGTTCTGCTCAGGAGGTTTTTGATAATTTGATTGGCTGTTGAAGAATCATATTCCACAAAATTTGATTGACTTGAGATTATGTGAATGAAAATAATCTATCAAAAAGAGTACGTGAAGATGGGTCGTCAAAACGAATATGTGAAGATGTTATAAATTACAAAAGCATAGGCCTTTTCAAATATTTAAGCATTTTATGATATGTACTTATAATTTGTAATCCAATCAGGTTGGTGAAGACGAATTTGGTTACATGCTTGCTG</genome_strand>
        <mrna_strand>TTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAG-TTTCATTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAAGACGAATTTGGTTACATGCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327985" ref_strand="+" ref_description="SGN-E327985 [cTOC-22-N20]">
      <seq>gattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggcaaggttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9407" stop="8079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9107" g_stop="8716" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8386" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="598" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E327985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9107" e_stop="8716"/>
          <exon e_start="8592" e_stop="8386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTG</genome_strand>
        <mrna_strand>GATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTT-AAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313147" ref_strand="+" ref_description="SGN-E313147 [cTOA-18-C20]">
      <seq>cccaacagatataattgcttcaaaattaggggttattgccggaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaagttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttggtggttcatcagctttcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9375" stop="8084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9075" g_stop="8716" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8386" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="567" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E313147" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9075" e_stop="8716"/>
          <exon e_start="8592" e_stop="8386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTG</genome_strand>
        <mrna_strand>CCCAACAGATATAATTGCTTCAAAATTAGGGGTTATTGCCGGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAAGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245661" ref_strand="+" ref_description="SGN-E245661 [cLEF-43-N16]">
      <seq>acagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9371" stop="8106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9071" g_stop="8716" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8406" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="543" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E245661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9071" e_stop="8716"/>
          <exon e_start="8592" e_stop="8406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGG</genome_strand>
        <mrna_strand>ACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313254" ref_strand="+" ref_description="SGN-E313254 [cTOA-18-D11]">
      <seq>ttttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttggtatttcccgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9380" stop="8109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9080" g_stop="8716" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8409" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="549" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E313254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9080" e_stop="8716"/>
          <exon e_start="8592" e_stop="8409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCT</genome_strand>
        <mrna_strand>TTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254802" ref_strand="+" ref_description="SGN-E254802 [cLEG-33-G22]">
      <seq>ccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctgggggtgcaccagctaatgttgctgttggtatttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9286" stop="8112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8986" g_stop="8716" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8412" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="452" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E254802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8986" e_stop="8716"/>
          <exon e_start="8592" e_stop="8412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCG</genome_strand>
        <mrna_strand>CCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGGGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326569" ref_strand="+" ref_description="SGN-E326569 [cTOC-17-F6]">
      <seq>aaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9431" stop="8122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9131" g_stop="8716" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8422" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="587" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E326569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9131" e_stop="8716"/>
          <exon e_start="8592" e_stop="8422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTG</genome_strand>
        <mrna_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317958" ref_strand="+" ref_description="SGN-E317958 [cTOA-30-K12]">
      <seq>ttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacnagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtgcaccagctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9426" stop="8126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9126" g_stop="8716" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8426" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="578" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E317958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9126" e_stop="8716"/>
          <exon e_start="8592" e_stop="8426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCT</genome_strand>
        <mrna_strand>TTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACNAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256448" ref_strand="+" ref_description="SGN-E256448 [cLEG-38-O6]">
      <seq>aaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaagctcctggtggtgcaccagctaatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9354" stop="8127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9054" g_stop="8716" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8427" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="505" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E256448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9054" e_stop="8716"/>
          <exon e_start="8592" e_stop="8427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGC</genome_strand>
        <mrna_strand>AAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAAGCTCCTGGTGGTGCACCAGCTAATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366985" ref_strand="+" ref_description="SGN-E366985 [cLPT-6-B5]">
      <seq>agaattgcttcaaaattagggtttattgcctgaaaattactagttttacacgattgctccaataccttctcctaatttccattgtagttgctgaaattttgacgcctgatgtaactgtattttaggtttcaattttgaaatacgtgtttctcagatcagatcagttcctctgttttttttttctttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcccagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacagtgggccactggagaaggatgaatcttcacttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9365" stop="8143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8443" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="500" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E366985" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8716"/>
          <exon e_start="8592" e_stop="8443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTG-GTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTG</genome_strand>
        <mrna_strand>AGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTAC-ACGATTGCTCCAATACCTTCTCCTAATTTCCATTGTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTCAATTTTGAAATACGTGTTTCTCAGATCAGATCAGTTCCTCTGTTTTTTTTTTCTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCCCAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAGTGGGCCACTGGAGAAGGATGAATCTTCACTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254573" ref_strand="+" ref_description="SGN-E254573 [cLEG-29-P5]">
      <seq>ggcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaaaaggctcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9359" stop="8149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9060" g_stop="8716" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8449" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="489" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E254573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9060" e_stop="8716"/>
          <exon e_start="8592" e_stop="8449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTG</genome_strand>
        <mrna_strand>GGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257146" ref_strand="+" ref_description="SGN-E257146 [cLEG-46-K1]">
      <seq>cctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctaaaagatgcactgtcaaaacaacttcccagtatccgcacagctttcctccatgtaaaatcccaagaagaacattgcccaatgacaatgggctaatggaaaaagaagaatcctctcctggtgtgtgctttggagaaaagctcattgattttgttcccactacaaatgggctttcattggctgaaactcctgcatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9260" stop="8157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8960" g_stop="8716" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8456" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="382" r_length="137" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E257146" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8960" e_stop="8716"/>
          <exon e_start="8592" e_stop="8456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAG</genome_strand>
        <mrna_strand>CCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAAAAGATGCACTGTCAAAACAACTTCCCAGTATCCGCACAGCTTTCCTCCATGTAAAATCCCAA...........................................................................................................................GAAGAACATTGCCCAATGACAATGGGCTAATGGAAAAAGAAGAATCCTCTCCTGGTGTGTGCTTTGGAGAAAAGCTCATTGATTTTGTTCCCACTACAAATGGGCTTTCATTGGCTGAAACTCCTGCATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326081" ref_strand="+" ref_description="SGN-E326081 [cTOC-16-F5]">
      <seq>aaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9431" stop="8159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9131" g_stop="8716" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8459" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="550" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E326081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9131" e_stop="8716"/>
          <exon e_start="8592" e_stop="8459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</genome_strand>
        <mrna_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330817" ref_strand="+" ref_description="SGN-E330817 [cTOD-10-O10]">
      <seq>aaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgcctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcaccagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9430" stop="8159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9130" g_stop="8716" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8459" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="551" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E330817" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9130" e_stop="8716"/>
          <exon e_start="8592" e_stop="8459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATG-CTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCA-CAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</genome_strand>
        <mrna_strand>AAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACCAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313243" ref_strand="+" ref_description="SGN-E313243 [cTOA-18-C12]">
      <seq>gccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9416" stop="8159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9116" g_stop="8716" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8459" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="535" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E313243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9116" e_stop="8716"/>
          <exon e_start="8592" e_stop="8459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</genome_strand>
        <mrna_strand>GCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254334" ref_strand="+" ref_description="SGN-E254334 [cLEG-27-N18]">
      <seq>ccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9376" stop="8159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9076" g_stop="8716" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8459" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="495" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E254334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9076" e_stop="8716"/>
          <exon e_start="8592" e_stop="8459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</genome_strand>
        <mrna_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262718" ref_strand="+" ref_description="SGN-E262718 [cLEG-63-I16]">
      <seq>ccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgcatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9376" stop="8159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9076" g_stop="8716" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8459" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="495" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E262718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9076" e_stop="8716"/>
          <exon e_start="8592" e_stop="8459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</genome_strand>
        <mrna_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322562" ref_strand="+" ref_description="SGN-E322562 [cTOB-26-D14]">
      <seq>gttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctntcctcgatgtaaaatccaaggaagaccattgccaagtgacnatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaagctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9420" stop="8165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9120" g_stop="8716" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8465" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="532" r_length="127" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E322562" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9120" e_stop="8716"/>
          <exon e_start="8592" e_stop="8465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCA</genome_strand>
        <mrna_strand>GTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTNTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGACCATTGCCAAGTGACNATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAA-GCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323707" ref_strand="+" ref_description="SGN-E323707 [cTOC-2-P21]">
      <seq>agaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaagctcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9365" stop="8165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8465" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="478" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E323707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8716"/>
          <exon e_start="8592" e_stop="8465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCA</genome_strand>
        <mrna_strand>AGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257850" ref_strand="+" ref_description="SGN-E257850 [cLEG-39-B9]">
      <seq>actgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattttgttccgactacaagtgggctttcattggctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9251" stop="8173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8951" g_stop="8716" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8473" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="356" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E257850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8951" e_stop="8716"/>
          <exon e_start="8592" e_stop="8473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAG</genome_strand>
        <mrna_strand>ACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202228" ref_strand="+" ref_description="SGN-E202228 [cLEC-7-N20]">
      <seq>cgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttacgttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttactagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctctggagaaatgctcattgattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9391" stop="8205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9091" g_stop="8716" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8505" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="464" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E202228" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9091" e_stop="8716"/>
          <exon e_start="8592" e_stop="8505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGT</genome_strand>
        <mrna_strand>CGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTACGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTACTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTCTGGAGAAATGCTCATTGATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255777" ref_strand="+" ref_description="SGN-E255777 [cLEG-36-N20]">
      <seq>tgatttttgtctgacaagtgacagggataactagaggtcgtcgtcggctagtctttgggccatccaacaaaacaaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttgttgtgtgctttggagaaatgctcattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9504" stop="8208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9204" g_stop="8716" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8508" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="574" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E255777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9204" e_stop="8716"/>
          <exon e_start="8592" e_stop="8508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTT</genome_strand>
        <mrna_strand>TGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326677" ref_strand="+" ref_description="SGN-E326677 [cTOC-17-H7]">
      <seq>aaaacttgtatgttagccaatttccattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactacttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggctttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaaggaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattggcaaacgacaatgggctattggagaacgatgaatcttctcttgttgtgtgctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9431" stop="8226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9131" g_stop="8716" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8526" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="483" r_length="67" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E326677" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9131" e_stop="8716"/>
          <exon e_start="8592" e_stop="8526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGG</genome_strand>
        <mrna_strand>AAAACTTGTATGTTAGCCAATTTCCATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTACTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGCTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGGAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGGCAAACGACAATGGGCTATTGGAGAACGATGAATCTTCTCTTGTTGTGTGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324549" ref_strand="+" ref_description="SGN-E324549 [cTOC-9-D7]">
      <seq>ataccttcttctaatttccattttanttgctgggattttgacgcctgatgtgactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccacaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttgccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaggatgaatcttctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9303" stop="8239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9003" g_stop="8716" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8539" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="342" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E324549" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9003" e_stop="8716"/>
          <exon e_start="8592" e_stop="8539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTG</genome_strand>
        <mrna_strand>ATACCTTCTTCTAATTTCCATTTTANTTGCTGGGATTTTGACGCCTGATGTGACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCACAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTGCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256532" ref_strand="+" ref_description="SGN-E256532 [cLEG-38-K5]">
      <seq>tgatttttgtctgacaagtgacagggataactagaggtcgtcgtcggctagtctttgggccatccaacaaaacaaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatccaaggaagagcattgccaagtgacaatgggctagtggagaaagatgaatcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9504" stop="8242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9204" g_stop="8716" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8592" g_stop="8542" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="540" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E256532" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9204" e_stop="8716"/>
          <exon e_start="8592" e_stop="8542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAGGTGTTCATCTTTTTAAATTTAGTCTACTTTCAGAAGACTGGATTTATCATTTATATGTGTTTGTTGAAAATTAGTTAATTTTGTATTTTGTACTTTCTTCTTCAACTATATTTTTACTTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTC</genome_strand>
        <mrna_strand>TGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG...........................................................................................................................GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAAGATGAATCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264705" ref_strand="+" ref_description="SGN-E264705 [cLEG-72-K18]">
      <seq>ccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcactgtcaaagcaacttcccagtatccgcacagctttcctcgatgtaaaatcccagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9376" stop="8415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9076" g_stop="8716" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E264705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9076" e_stop="8716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG</genome_strand>
        <mrna_strand>CCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355693" ref_strand="+" ref_description="SGN-E355693 [cLHT-1-G12]">
      <seq>ttttccccaacagaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattgtagttgctgaaattttgacgcctgatgtaactgtattttaggtttcaattttgaaatacgtgtttctcagatcagatcagttcctctgttttttttttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttactttcagtctttcctcttcctataagatgcactgttaaagcaacttcccagtatccgcccagctttcctcgatgtaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9380" stop="8421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9080" g_stop="8719" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E355693" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9080" e_stop="8719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCC</genome_strand>
        <mrna_strand>TTTTCCCCAACAG-AAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTGTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTCAATTTTGAAATACGTGTTTCTCAGATCAGATCAGTTCCTCT-GTTTTTTT--TTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTACTTTCAGTCTTTCCTCTTCCTATAAGATGCACTGTTAAAGCAACTTCCCAGTATCCGCCCAGCTTTCCTCGATGTAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280147" ref_strand="+" ref_description="SGN-E280147 [cLEL-7-A4](-)">
      <seq>gattttacatcgaggaaagctgtgcggatactgggaagttgctttgacagtgcatcttctaggaagaggaaagactgaaagcaaagcgcttctggaagatttacttgaagtagaaactccagtgaaggagaaagcagtagcatgaagagccatttattagaaagtaaaaaaaccagaggaactgatctgatctgagaaactcgtatttcacaattaaaacctaaaatacagttacatcaggcgtcaaaatttcagcaactaaaatggaaattaggagaaggtattggagcaatcgttgtaaaactagtaattttcaggcaataaagcctaattttgaagcaattctttctgttggggaaaatagtagcagcggagaaatcaatgaatcgactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="8420" stop="9409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8720" g_stop="9116" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E280147" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8720" e_stop="9116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTACATCGAGGAAAGCTGTGCGGATACTGGGAAGTTGCTTTGACAGTGCATCTTCTAGGAAGAGGAAAGACTGAAAGCAAAGCGCTTCTGGAAGATTTACTTGAAGTAGAAACTCCAGTGAAGGAGAAAGCAGTAGCATGAAGAGCCATTTATTAGAAAGTAAAAAAACCAGAGGAACTGATCTGATCTGAGAAACTCGTATTTCACAATTAAAACCTAAAATACAGTTACATCAGGCGTCAAAATTTCAGCAACTAAAATGGAAATTAGGAGAAGGTATTGGAGCAATCGTTGTAAAACTAGTAATTTTCAGGCAATAAACCCTAATTTTGAAGCAATTCTTTCTGTTGGGGAAAATAGTAGCAGCGGAGAAATCAATGAATCGAAATTGGC</genome_strand>
        <mrna_strand>GATTTTACATCGAGGAAAGCTGTGCGGATACTGGGAAGTTGCTTTGACAGTGCATCTTCTAGGAAGAGGAAAGACTGAAAGCAAAGCGCTTCTGGAAGATTTACTTGAAGTAGAAACTCCAGTGAAGGAGAAAGCAGTAGCATGAAGAGCCATTTATTAGAAAGTAAAAAAACCAGAGGAACTGATCTGATCTGAGAAACTCGTATTTCACAATTAAAACCTAAAATACAGTTACATCAGGCGTCAAAATTTCAGCAACTAAAATGGAAATTAGGAGAAGGTATTGGAGCAATCGTTGTAAAACTAGTAATTTTCAGGCAATAAAGCCTAATTTTGAAGCAATTCTTTCTGTTGGGGAAAATAGTAGCAGCGGAGAAATCAATGAATCGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330667" ref_strand="+" ref_description="SGN-E330667 [cTOD-8-C23]">
      <seq>aataagcaagtgggtaaatcatgatttttgtctgacaagtgacagggataactagaggtcgtcgtcggctagtctttgggccatccaacaaaacaaaacttgtatgttagccaatttcgattcattgatttctccgctgctactattttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttctcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcctcttcctagaagatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9525" stop="8468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9225" g_stop="8768" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E330667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9225" e_stop="8768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGCAAGTGGGTAAATCATGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACT</genome_strand>
        <mrna_strand>AATAAGCAAGTGGGTAAATCATGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335766" ref_strand="+" ref_description="SGN-E335766 [cTOE-19-O7]">
      <seq>ttttccccaacagaaagaattgcttcaaaattagggtttattgcctgaaaattactagttttacaacgattgctccaataccttctcctaatttccattttagttgctgaaattttgacgcctgatgtaactgtattttaggttttaattgtgaaatacgagtttcgcagatcagatcagttcctctggtttttttactttctaataaatggctcttcatgctactgctttctccttcactggagtttctacttcaagtaaatcttccagaagcgctttgctttcagtctttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="9380" stop="8486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9080" g_stop="8786" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E335766" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9080" e_stop="8786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCT</genome_strand>
        <mrna_strand>TTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCGCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17819" stop="16769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17519" g_stop="17069" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17519" e_stop="17069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATATATATTGCATAATTATAAGTGTATAGCAAAAAGATATATGTTTTTCTCTCACTTTATACAAAAACATAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGCTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTATATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGCGTATATACAATTTTCTCGCGCATTATACAAAACAGAAACAGAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAAATTTTTGGCAAATAGACGCCTGACAAACTTTAGCTAACGTTTACTATGAAGCACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGGATATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17820" stop="16922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17520" g_stop="17196" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17520" e_stop="17196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAAAAGATATATGTTTTTCTCTCACTTTATACAAAAACATAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGCTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTATATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGCGTATATACAATTTTCTCGCGCATTATACAAAACAGAAACAGAATTTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17820" stop="16922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17520" g_stop="17228" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17520" e_stop="17228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAAAAGATATATGTTTTTCTCTCACTTTATACAAAAACATAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGCTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTATATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGCGTATATACAATTTTCTCGCGCATTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745902" ref_strand="+" ref_description="SGN-E745902 [GI|47105500]">
      <seq>ggaacaaaaaaaaaagaaaactcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcagtttttattttttcctccgaaacgccgtttttcatttattaaaggcgttttgcatttaatactacttccacctgtttttccacttttccgtcaatatcttaatccatttccacgaaaatactaagatagtacttaattattaggttggggagtctgattaatatatatagttatttaagaagtttaacaggtgaaattgccaggggttatggagtgtgggagcccccatccgaaggggggttgggggcgctgccccgacctaaattttaggctgtagtattttttttctgtaaccaaaagtattttgatttatcaatatatatgtaatcaaaagtattttgatttatcaatatatatatttcatcgccggggaagtttactcacaaattgttaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17712" stop="19708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18011" g_stop="19411" g_length="1401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1401" r_length="1401" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E745902" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1401</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18011" e_stop="19411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAAAAAAAAAGAAAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTCTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAATATATATATTTCATCGCCGTGGAAGTTTACTCACAAATTGTTACCACAAATATTG</genome_strand>
        <mrna_strand>GGAACAAAAAAAAAAGAAAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGGGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGGGGGTTGGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTTTCTGTAACCAAAAGTATTTTGATTTATCAATATATATGTAATCAAAAGTATTTTGATTTATCAATATATATATTTCATCGCCGGGGAAGTTTACTCACAAATTGTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209560" ref_strand="+" ref_description="SGN-E209560 [cLEC-54-J18]">
      <seq>aaactcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcnccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17728" stop="18817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18028" g_stop="18517" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E209560" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18028" e_stop="18517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTT</genome_strand>
        <mrna_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCNCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208440" ref_strand="+" ref_description="SGN-E208440 [cLEC-37-D18]">
      <seq>aaactcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17728" stop="18812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18028" g_stop="18512" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E208440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18028" e_stop="18512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTT</genome_strand>
        <mrna_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209542" ref_strand="+" ref_description="SGN-E209542 [cLEC-54-P5]">
      <seq>aaactcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17728" stop="18731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18028" g_stop="18431" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E209542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18028" e_stop="18431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATG</genome_strand>
        <mrna_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209634" ref_strand="+" ref_description="SGN-E209634 [cLEC-54-D15]">
      <seq>aaactcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17728" stop="18724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18028" g_stop="18424" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E209634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18028" e_stop="18424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTC</genome_strand>
        <mrna_strand>AAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210945" ref_strand="+" ref_description="SGN-E210945 [cLEC-69-F1]">
      <seq>actcttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtagaaatatactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17730" stop="19067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18030" g_stop="18767" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E210945" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18030" e_stop="18767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGC</genome_strand>
        <mrna_strand>ACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGC-AAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGT-AGAAATATACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213850" ref_strand="+" ref_description="SGN-E213850 [cLEC-76-L11]">
      <seq>ttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcnaaaaactttattattatcctatttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17734" stop="19025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18034" g_stop="18725" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E213850" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18034" e_stop="18725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATT</genome_strand>
        <mrna_strand>TTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCNAAAAACTTTATTATTATCCTATTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211815" ref_strand="+" ref_description="SGN-E211815 [cLEC-66-L19]">
      <seq>ttccccttccccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaagattgccgtcgtatgatcagcaaagtggatgttgacggcgatggatgcgttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17734" stop="18817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18034" g_stop="18517" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E211815" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18034" e_stop="18517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTT</genome_strand>
        <mrna_strand>TTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAAGATTGCCGTCGTATGATCAGCAAAGTGGATGTTGACGGCGATGGATGCGTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253565" ref_strand="+" ref_description="SGN-E253565 [cLEG-24-D18]">
      <seq>tccccttccccttccgcatcttttcccttccatacctgtctccgcaaatggccaaaactcccagcgactcccaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgaccccaatggcgacggaaaaatctctctatcggagcttggcgccgattctgaatgccaccttggcagtaagacgtcgccggatgaagtaaatagaataatgttggaagttgatacctgatggggatggttttattgaccttgaaagagtttgctgctttttactgtccccgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcaccagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17735" stop="18879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18035" g_stop="18579" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E253565" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18035" e_stop="18579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATA-CTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCG-CGATTCTGAATG-CA-CTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATA-CTGATGGGGATGGTTTTATTGA-CTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCA-CAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAA</genome_strand>
        <mrna_strand>TCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACCTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCCAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACCCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCCGATTCTGAATGCCACCTTGGCAGTAAGACGTCGCCGGATGAAGTAAATAGAATAATGTTGGAAGTTGATACCTGATGGGGATGGTTTTATTGACCTTGAAAGAGTTTGCTGCTTTTTACTGTCCCCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACCAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206860" ref_strand="+" ref_description="SGN-E206860 [cLEC-33-K16]">
      <seq>cccttccgcatcttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17743" stop="18874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18043" g_stop="18574" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E206860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18043" e_stop="18574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGA</genome_strand>
        <mrna_strand>CCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733370" ref_strand="+" ref_description="SGN-E733370 [LB04CG08]">
      <seq>ccttttcccttccatactgtctccgcaaatggccaaaactcccagcgactccaaacagccggcagtttcatcggcggagatggacggagtcgagaaggtattcaggaagtttgacgccaatggcgacggaaaaatctctctatcggagcttggcgcgattctgaatgcacttggcagtaagacgtcgccggatgaggtaaatagaataatgttggaagttgatactgatggggatggttttattgacttgaaagagtttgctgctttttactgtccgcgaggagcggacggtgataataaggagcttcgggaggctttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="17754" stop="19078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18053" g_stop="18777" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E733370" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18053" e_stop="18777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAA</genome_strand>
        <mrna_strand>CCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350699" ref_strand="+" ref_description="SGN-E350699 [cTOS-7-I6]">
      <seq>tttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaagtaagaataatactttgcaaaaataaaaattagtctttagacatctnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18068" stop="19095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18805" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E350699" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGT</genome_strand>
        <mrna_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAAGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTTAGACATCTNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350341" ref_strand="+" ref_description="SGN-E350341 [cTOS-5-A8]">
      <seq>tttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18068" stop="19096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18805" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E350341" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGT</genome_strand>
        <mrna_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357474" ref_strand="+" ref_description="SGN-E357474 [cTOS-23-O7]">
      <seq>tttcgacttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18068" stop="19096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18805" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E357474" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGT</genome_strand>
        <mrna_strand>TTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242418" ref_strand="+" ref_description="SGN-E242418 [cLED-30-O12]">
      <seq>ttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactgtattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacccgccttttacaacaacaaagagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18075" stop="19112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18375" g_stop="18808" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E242418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18375" e_stop="18808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCAC</genome_strand>
        <mrna_strand>TTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTGTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243819" ref_strand="+" ref_description="SGN-E243819 [cLED-35-N14]">
      <seq>ttgtatgataaggacaaaaacggcaaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgtatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtagggttatttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18075" stop="18898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18375" g_stop="18598" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E243819" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18375" e_stop="18598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAAC</genome_strand>
        <mrna_strand>TTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGGTTATTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240835" ref_strand="+" ref_description="SGN-E240835 [cLED-24-P5]">
      <seq>aggacaaaaacggctaaatcacagcggctgaattgcattctgttatgaagagcctcggagagaagtgctcgctcaaggattgccgtcgcatgatcagcaaggtggatgttgacggcgatggatgcgttaactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctggttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18085" stop="18983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18385" g_stop="18683" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E240835" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18385" e_stop="18683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAA</genome_strand>
        <mrna_strand>AGGACAAAAACGGCTAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGCATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGGTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368364" ref_strand="+" ref_description="SGN-E368364 [TUS-23-H11]">
      <seq>taactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcagtttttattttttcctccgaaacgccgtttttcatttattaaaggcgttttgcatttaatactacttccacctgtttttccacttttccgtcaatatcttaatccatttccacgaaaatactaagatagtacttaattattaggttgtggagtctgattaatatatatagttatttaagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18212" stop="19489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18512" g_stop="19189" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E368364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18512" e_stop="19189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGT</genome_strand>
        <mrna_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243654" ref_strand="+" ref_description="SGN-E243654 [cLED-34-N23]">
      <seq>taactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcaggttttattttttcctccgaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18212" stop="19330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18512" g_stop="19030" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E243654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18512" e_stop="19030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACG</genome_strand>
        <mrna_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGGTTTTATTTTTTCCTCCGAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243531" ref_strand="+" ref_description="SGN-E243531 [cLED-34-N24]">
      <seq>taactttgaggagtttaagaagatgatgagtaggacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgagttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18212" stop="19307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18512" g_stop="19007" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E243531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18512" e_stop="19007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAG</genome_strand>
        <mrna_strand>TAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGAGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306073" ref_strand="+" ref_description="SGN-E306073 [cLEY-13-M23]">
      <seq>gatgatgagtagtacgtgacttttcggatcataacttatggaatcaacggtaggtttatttgcaaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcagtttttatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18233" stop="19319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18533" g_stop="19019" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E306073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18533" e_stop="19019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTT</genome_strand>
        <mrna_strand>GATGATGAGTAGTACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354863" ref_strand="+" ref_description="SGN-E354863 [cTOS-19-D4]">
      <seq>caaccgatttcggaactctgtagatacgcttctgtttctgccatcgtttttgctgtcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataattcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcagtttttattttttcctccgaaacgccgtttttcatttattnaaggcgttttgcatttaatactacttccacctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18295" stop="19384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18595" g_stop="19084" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E354863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18595" e_stop="19084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTT</genome_strand>
        <mrna_strand>CAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTNAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368363" ref_strand="+" ref_description="SGN-E368363 [TUS-23-H11](-)">
      <seq>tcaatccactctaactgtagttaggtatgaagaaattccgaatcagcaaaaaactttattattatcctatttgatttgggattatgataatttcaaaaaaggtaagaataatactttgcaaaaataaaaattagtcttaagacatctactattgagtcacgcgcaatccatctctgttactgctcattttatctactacttttatttgcttttttggtacttttgagtgcttttgaagaaatgcattttcaaaggtgctgatagtgccaagaccacacggaattgtaatcgtgttaattgggcaacgcgcttgtagctttcatattgctagtggtaaatatgtactccgcctatgtcagtttttattttttcctccgaaacgccgtttttcatttattaaaggcgttttgcatttaatactacttccacctgtttttccacttttccgtcaatatcttaatccatttccacgaaaatactaagatagtacttaattattaggttgtggagtctgattaatatatatagttatttaagaagtttaacaggtgaaattgccaggggttatggagtgtgggagcccccatccgaaggagggtttggggcgctgccccgacctaaattttaggctgtagtattttttctctgtaaccaaaagtattttgatttatcaatatatatgtaatcaaaagtattctgatttatcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18350" stop="19664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18650" g_stop="19357" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="727"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E368363" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18650" e_stop="19357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAA-TTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTCTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAAT</genome_strand>
        <mrna_strand>TCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTTTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308842" ref_strand="+" ref_description="SGN-E308842 [cLEY-23-A13]">
      <seq>ccatttccacgaaaatactaagatagtacttaattattaggttgtggagtctgattaatatatatagttatttaagaagtttaacaggtgaaattgccaggggttatggagtgtgggagcccccatccgaaggagggtttggggcgctgccccgacctaaattttaggctgtagtattttttctctgtaaccaaaagtattctgatttatcaatatatatgtaatcaaaagtattctgatttatcaatatatatatttcatcgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="18810" stop="19673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19110" g_stop="19374" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="266" polyA_stop="277"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E308842" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19110" e_stop="19374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTCTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAATATATATATTTCATCGCC</genome_strand>
        <mrna_strand>CCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTCTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAATATATATATTTCATCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539345" ref_strand="-" ref_description="SGN-E539345 [TUS-59-A22]">
      <seq>gctggagtgattgtatctaagttattaaattaccccgtacgaggttttgctttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcntgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccagtgttatgcagagaagcaagcactaggagttgtagaccaagagctcctggacactcaggtgaaccctgctgtatgggaaattagtggacatatagtgcttaagcgaacaaaggattacaatgatgcatcagaggaatatgcatggaaacttctttctgaggtttccatatcagaggagagatttgaagaagtaaagggctatatttctgaagcagctgatctacaagcagatgaggatgaaaacatcaatccagagaaggaaattccagattctcctggtccgcaggtggcctcacatattcctccagattgtttggtgttgcagtgaagaatttgtggcttgctcttgcaagatctaataaaagtttgaagtattatctagtgtatggttgaaattttgtgtgtttgtttttccagcatcttgtttgatgcatactgttgtcttggttggaggttgtaatccccaaatagtgttaaacgtcatggctgcaagctgtggtctttggcaggattgtttacagtaccttttttgttggtgttttgactgtgctagcaaatgttcctaataataacaccagtgtaggactagcaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24572" stop="21086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24272" g_stop="24084" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21982" g_stop="21386" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="785" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E539345" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539345" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24272" e_stop="24084"/>
          <exon e_start="21982" e_stop="21386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACTAGCAAGTTTTG</genome_strand>
        <mrna_strand>GCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGC-TTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCNTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACTAGCAAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281737" ref_strand="+" ref_description="SGN-E281737 [cLER-14-G7]">
      <seq>aaaacttgctagtcctacactggtgttattattaggaacatttgctagcacagtcaaaacaccaacaaaaaaggtactgtaaacaatcctgccaaagaccacagcttgcagccatgacgtttaacactatttggggattacaacctccaaccaagacaacagtatgcatcaaacaagatgctggaaaaacaaacacacaaaatttcaaccatacactagataatacttcaaacttttattagatcttgcaagagcaagccacaaattcttcactgcaacaccaaacaatctggaggaatatgtgaggccacctgcggaccaggagaatctggaatttccttctctggattgatgttttcatcctcatctgcttgtagatcagctgcttcagaaatatagccctttacttcttcaaatctctcctctgatatggaaacctcagaaagaagtttccatgcatattcctctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="21087" stop="22158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21387" g_stop="21858" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E281737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21387" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGCTAGTCCTACACTGGTGTTATTATTAGGAACATTTGCTAGCACAGTCAAAACACCAACAAAAAAGGTACTGTAAACAATCCTGCCAAAGACCACAGCTTGCAGCCATGACGTTTAACACTATTTGGGGATTACAACCTCCAACCAAGACAACAGTATGCATCAAACAAGATGCTGGAAAAACAAACACACAAAATTTCAACCATACACTAGATAATACTTCAAACTTTTATTAGATCTTGCAAGAGCAAGCCACAAATTCTTCACTGCAACACCAAACAATCTGGAGGAATATGTGAGGCCACCTGCGGACCAGGAGAATCTGGAATTTCCTTCTCTGGATTGATGTTTTCATCCTCATCTGCTTGTAGATCAGCTGCTTCAGAAATATAGCCCTTTACTTCTTCAAATCTCTCCTCTGATATGGAAACCTCAGAAAGAAGTTTCCATGCATATTCCTCTGATG</genome_strand>
        <mrna_strand>AAAACTTGCTAGTCCTACACTGGTGTTATTATTAGGAACATTTGCTAGCACAGTCAAAACACCAACAAAAAAGGTACTGTAAACAATCCTGCCAAAGACCACAGCTTGCAGCCATGACGTTTAACACTATTTGGGGATTACAACCTCCAACCAAGACAACAGTATGCATCAAACAAGATGCTGGAAAAACAAACACACAAAATTTCAACCATACACTAGATAATACTTCAAACTTTTATTAGATCTTGCAAGAGCAAGCCACAAATTCTTCACTGCAACACCAAACAATCTGGAGGAATATGTGAGGCCACCTGCGGACCAGGAGAATCTGGAATTTCCTTCTCTGGATTGATGTTTTCATCCTCATCTGCTTGTAGATCAGCTGCTTCAGAAATATAGCCCTTTACTTCTTCAAATCTCTCCTCTGATATGGAAACCTCAGAAAGAAGTTTCCATGCATATTCCTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745515" ref_strand="+" ref_description="SGN-E745515 [GI|47105273]">
      <seq>gattgaccaaaatacgtgtgcaagagagagaccaccggagcaccaaacgccacccaacaaccacccattcaattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccagtgttatgcagagaagcaagcactaggagttgtagaccaagagctcctggacactcaggtgaaccctgctgtatgggaaattagtggacatatagtgcttaagcgaacaaaggattacaatgatgcatcagaggaatatgcatggaaacttctttctgaggtttccatatcagaggagagatttgaagaagtaaagggctatatttctgaagcagctgatctacaagcagatgaggatgaaaacatcaatccagagaaggaaattccagattctcctggtccgcaggtggcctcacatattcctccagattgtttggtgttgcagtgaagaatttgtggcttgctcttgcaagatctaataaaagtttgaagtattatctagtgtatggttgaaattttgtgtgtttgtttttccagcatcttgtttgatgcatactgttgtcttggttggaggttgtaatccccaaatagtgttaaacgtcatggctgcaagctgtggtctttggcaggattgtttacagtaccttttttgttggtgttttgactgtgctagcaaatgttcctaataataacaccagtgtaggaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26682" stop="21092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26383" g_stop="25849" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="24700" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="960" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="961" r_stop="1146" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1413" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21982" g_stop="21396" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1414" r_stop="2000" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2001" polyA_stop="2013"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E745515" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2000</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26383" e_stop="25849"/>
          <exon e_start="25124" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
          <exon e_start="21982" e_stop="21396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGACCAAAATACGTGTGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACTA</genome_strand>
        <mrna_strand>GATTGACCAAAATACGTGTGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353849" ref_strand="+" ref_description="SGN-E353849 [cTOS-10-B18]">
      <seq>acatatagtgcttaagcgaacaaaggattacaatgatgcatcagaggaatatgcatggaaacttctttctgaggtttccatatcagaggagagatttgaagaagtaaagggctatatttctgaagcagctgatctacaagcagatgaggatgaaaacatcaatccagagaaggaaattccagattctcctggtccgcaggtggcctcacatattcctccagattgtttggtgttgcagtgaagaatttgtggcttgctcttgcaagatctaataaaagtttgaagtattatctagtgtatggttgaaattttgtgtgtttgtttttccagcatcttgtttgatgcatactgttgtcttggttggaggttgtaatccccaaatagtgttaaacgtcatggctgcaagctgtggtctttggcaggattgtttacagtanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="22196" stop="21161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21896" g_stop="21464" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="458"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E353849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21896" e_stop="21464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACA</genome_strand>
        <mrna_strand>ACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356731" ref_strand="+" ref_description="SGN-E356731 [cTOS-21-K10]">
      <seq>cagatgaggatgaaaacatcaatccagagaaggaaattccagattctcctggtccgcaggtggcctcacatattcctccagattgtttggtgttgcagtgaagaatttgtggcttgctcttgcaagatctaataaaagtttgaagtattatctagtgtatggttgaaattttgtgtgtttgtttttccagcatcttgtttgatgcatactgttgtcttggttggaggttgtaatccccaaatagtgttaaacgtcatggctgcaagctgtggtctttggcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="22056" stop="21176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21756" g_stop="21471" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E356731" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21756" e_stop="21471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATT</genome_strand>
        <mrna_strand>CAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259434" ref_strand="+" ref_description="SGN-E259434 [cLEG-43-P22]">
      <seq>ttcttgattgcttacctcagagaattgatcgtgatagttttgcaatggctctccattgtgccagagaagcggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgcgattcgtctgatgctgctgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccagtgttatgcagagaagcaagcactaagagttgttgaccaagagctcctggacactcatgtgaaccctgctgtatgggaaattagtggacatatagtgcttaagcgaacaaaggattacaatgatgcatcagaggaatatgcatggaaacttctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24880" stop="21527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24580" g_stop="24438" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="410" r_length="267" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21982" g_stop="21827" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="566" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E259434" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24580" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
          <exon e_start="21982" e_stop="21827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCT</genome_strand>
        <mrna_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATGGCTCTCCATTGTGCCAGAGAAGCGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGCGATTCGTCTGATGCTGCTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCACTAAGAGTTGTTGACCAAGAGCTCCTGGACACTCATGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264772" ref_strand="+" ref_description="SGN-E264772 [cLEG-71-B19]">
      <seq>ttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccagtgttatgcagagaagcaagcactaggagttgtagaccaagagctcctggacactcaggtgaaccctgctgtatgggaaattantggacatatagtgcttaagcgaacaaaggattacaatgatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24880" stop="21555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24580" g_stop="24438" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="410" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21982" g_stop="21855" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="538" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E264772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24580" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
          <exon e_start="21982" e_stop="21855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATC</genome_strand>
        <mrna_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTANTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370345" ref_strand="+" ref_description="SGN-E370345 [TUS-28-C7]">
      <seq>cgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccagtgttatgcagagaagcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25197" stop="21661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24897" g_stop="24700" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="384" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="651" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21982" g_stop="21961" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="673" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E370345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24897" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
          <exon e_start="21982" e_stop="21961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCAC</genome_strand>
        <mrna_strand>CGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258429" ref_strand="+" ref_description="SGN-E258429 [cLEG-47-O8]">
      <seq>ttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgctttcccagtgttatgcagagaagcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24880" stop="21662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24580" g_stop="24438" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="410" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21982" g_stop="21962" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="431" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E258429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24580" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
          <exon e_start="21982" e_stop="21962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAGGTAAATAGCTTGTCCAACTTTGTGTACTGTTGCTACAACACTAGCAAAAGTTTCTCTTAGGTTTATCAGTACAGTCATGGAATTTGTCATATCCTGCTGTTTAGAAGCTTTAACGAATACTTGTTAGATTTTTCGAGAAATGCATAAATATATTTTAAGACACAACTGGAGAATCTCTAGTTAATCAGCTAGTACCTGCTGATTGCAAAGCTGTGCACATTTGTAAGAAGTGAATTTTACTTGATGGATTTCTATGGGCCAGGGATTGGAAATAGGATATTGTTGGGAAAAAGTTGGAGATGAAATTATAATGAATGCTGGAAGGGGTTATACTCTGGAGATTGTTAATGATACTTGACAGGTTTGTCGTAGGATTGATGTAACTTTATTGCCCGTTGGTTCCTCAATTGGTTGGGCATTTTTAGTTGGTGGGGATAGTGATGGAAAACGGGCAGATTGGATTTGGACGTGAGCAGATTGAAAGATTGATTAGGTAAAATATTCTTAGCCCACTTTAATCTCCTAAAGCTAGAAAACTTTAAAAACCTTTTATGACTACATTTTTTATCCAAATGGTTGTAAATGAAGTTATATATACCCTAGAGACATTGAGTAGTGAATTACTAATAATGTTATTAGTATATAAATACAATTATCTTTTCTACCAAAAAATTGTAGATTGAATTATTTGTCAAAACAACAGGAGAAGACTACAAATTAATCCAAAGGCAAAAGGAGAAAAGGAAAACAAGTCATACAGGATGTCCACACGTGATGCAATATCAATATGTGGAAGAAACCCTAAATGTAAGAACAAGAAATGAAGATAGAAGAAAGGTAGAAGTGAGGAATTAATTAAAAGTTAAAGCTATAGAAAGCTAAAACCTTCCATTAATAAACAAAACAAGCACCAAATCTATGAAGATACATCGAAGGAACGATTCTTCAAACACGAAATCTATCTTTAAGATGACCGTCAAGAGGAAAGATTCCACAAGCAAGAAACCTCATCAACATTATTTAGCTACAAAGGTCATAGACTACTCTGATTAGAGTTTCACTCGTCAAACCAATATCCAAAATGATCCAAGTCTAAATGGGTTGTTCTCAACTTTTTATAGTCTAAGATAGATATTACGAAAATACCCTTAATGAAGAGAATAGCTTCTTTGAATAACATAGCTTGTTGTGGATGCGAGAAAGTCAATTAATTTAGTATTTGACGAATTTTTCTTTTGTAGATTTATTTATTATTTATTTATAATATAAGTGACTTTATTTATTATTCTAGAATAGGGTTTATGTTTCATAGCTTCATAAGGATTAGGTTAATCCATAGTTATTAGTTTGAAATAGGATTTATATTTCCTTCTTTCATAAGAATTAAAGTGTGTTGTAATAAGACTCTTATTTAAAGGAGTTTATGAGGAATAAATCAATAAGTCATATATCAGAGTTCTCTCTTTCATTAGACTCTAAGGTTTGAGTCTCCTTTTGTTGAAGAGATCGGAGTGATCTTTTTTTATTGTACTCTAATGTTTCAGCCTCTCTTTTAACTAGCTAAGTTTAAATATTGCCATGTGAATCAATTCTTCCGTATATGTATTCAATTGTTAGGAAACAAAATAAATGATTTTAAATCGGGAAAAGGAGGAACATGAAAAATAACAACATATTAAAAGGGGAAACATCGCAGTAAAAAGCAGAGAATAAATAGATAACACATCTGAGCAGCAGCTGTTGGTGTTGCCAATGCAGCAGCTACAGTTGAAAGAGATTTAAGAGGGAGGGGAAACAGATAAAGTCTGGGAACAACAACATACCAGTGTAGTTCCGCAAGTGAGGTCTAGGGAGGGCGGTGTATACTAATTAGTTCACGTTTTGATCTTTAAGCATCAGTTGTCAATTTTGTAGTGGGGGGAGGTCGAAACATTCAACTTTACACTTGTTTCAACTGAGTTTCTGTTATAGTAGAATAGCATGGGGTGCTCACCAGCACATGATTTTCATCTTGAATATAGAATATTTTGTGACTTGCGCATACAATTCTTTATGATGGTGAAGAAGCTTACATCATCCTTTTTCTGGGATGATTGTTTAGTGTTATGCAGAGAAGCAAGCA</genome_strand>
        <mrna_strand>TTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTTCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGCAGAGAAGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239534" ref_strand="+" ref_description="SGN-E239534 [cLED-23-C13]">
      <seq>ttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagtactgcccgtgatttgtctgatgctgttgtgaattcctgcatttcccttcagaataaaaacatccctttcaacattctcattgctcagtgtggaaagaagatttttctgcttccccaggagaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24877" stop="23777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24577" g_stop="24438" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24084" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="407" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E239534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24577" e_stop="24438"/>
          <exon e_start="24350" e_stop="24084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG</genome_strand>
        <mrna_strand>TTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300151" ref_strand="+" ref_description="SGN-E300151 [cLEW-11-H18]">
      <seq>cccaattgagttgggcacgttcttttgatacctcgagttctggattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttgcaggcgtattacttgtcagtgccatttccagctgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagggattgtatctaagttattaaattaccccgtacgagggtttgcttttgagggaggaaatggaagtactgcccgggatttgtctgatgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24918" stop="23874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24618" g_stop="24438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24174" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="357" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E300151" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24618" e_stop="24438"/>
          <exon e_start="24350" e_stop="24174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTT</genome_strand>
        <mrna_strand>CCCAATTGAGT-TGGGCACGTTCTTTTGATACCTCGAGTTCTGGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTGCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGCTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGGGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGGTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGGGATTTGTCTGATGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261654" ref_strand="+" ref_description="SGN-E261654 [cLEG-61-M17]">
      <seq>ctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctggggtggtgctnggagtgattgtatctaagttattaattaccccgtacgaggttttgctttttgaggangaaatggaagtactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25433" stop="23895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25124" g_stop="24700" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="436" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="622" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="779" r_length="157" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E261654" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25124" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCT-GGGTGGTGCT-GGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCC</genome_strand>
        <mrna_strand>TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGGTGGTGCTNGGAGTGATTGTATCTAAGTTATT-AATTACCCCGTACGAGGTTTTGCTTTTTGAGGANGAAATGGAAGTACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300010" ref_strand="+" ref_description="SGN-E300010 [cLEW-11-J15]">
      <seq>cccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgtacgaggttttgcttttgagggaggaaatggaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="24918" stop="23900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24618" g_stop="24438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24350" g_stop="24200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="332" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E300010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24618" e_stop="24438"/>
          <exon e_start="24350" e_stop="24200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTA</genome_strand>
        <mrna_strand>CCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205041" ref_strand="+" ref_description="SGN-E205041 [cLEC-16-N23]">
      <seq>tcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25153" stop="23934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24853" g_stop="24700" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="340" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24234" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="457" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E205041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24853" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTA</genome_strand>
        <mrna_strand>TCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270878" ref_strand="+" ref_description="SGN-E270878 [cLEM-6-D23]">
      <seq>cgccacctaaagaagcgcccaacagagttttgcattgataaggggcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggcaaggaaggggctgggtggtgctggagtgattgtatctaagttattaaattaccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25197" stop="23936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24897" g_stop="24700" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="384" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24236" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="499" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E270878" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24897" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCG</genome_strand>
        <mrna_strand>CGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGGGCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307654" ref_strand="+" ref_description="SGN-E307654 [cLEY-16-N3]">
      <seq>tgatgtgacattctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaagcgtattacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactggctaggaaggggcttggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25267" stop="23971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24967" g_stop="24700" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="454" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24271" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="534" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E307654" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24967" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGC</genome_strand>
        <mrna_strand>TGATGTGACATTCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAA.......................................................................................GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCTAGGAAGGGGCTTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207919" ref_strand="+" ref_description="SGN-E207919 [cLEC-34-O24]">
      <seq>gccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttccaggcgtgttacttgtcagtgccatttccagttgagaaagcaccaatacagaaaatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25196" stop="23993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24896" g_stop="24700" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="383" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24294" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="440" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E207919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24896" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTG</genome_strand>
        <mrna_strand>GCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG.......................................................................................GCGTGTTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214127" ref_strand="+" ref_description="SGN-E214127 [cLEC-80-F10]">
      <seq>ctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagaattgatcgtgatagttttgcaattgctctccattttgccagagaagtggcagatcctttctttagggtaggttataacagtttgggcgcttttgctaccattaccacctcacttccaggcgtattacttgtcagtgccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="25427" stop="24026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25127" g_stop="24700" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24623" g_stop="24438" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="612" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24350" g_stop="24326" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="637" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E214127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25127" e_stop="24700"/>
          <exon e_start="24623" e_stop="24438"/>
          <exon e_start="24350" e_stop="24326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAGGTAATGGATCAAGCGAATAATTTCTGATTATTTGATTAGCATGACTTAACTATATATATGATGTTCTCTTGTTGACATTCACGACAGGCGTATTACTTGTCAGTGCCATTTC</genome_strand>
        <mrna_strand>CTGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATT-ACCACCT-CACTTCCAG.......................................................................................GCGTATTACTTGTCAGTGCCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727055" ref_strand="+" ref_description="SGN-E727055 [LA13CD08]">
      <seq>ggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagtgggccaggaagaagtgcttttcaggtttgaaccaagtaccgactacaaggcccattacttttccggcatgcgagtaaacagtggtatttcacctagtattgttgctatcaatgtgagcccaattgagtatgggcacgttcttttgatacctcgagttcttgattgcttacctcagagattgatcgtgatagttttgcaattgctctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26524" stop="24224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26224" g_stop="25849" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="24700" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="801" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24623" g_stop="24524" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="900" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E727055" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26224" e_stop="25849"/>
          <exon e_start="25124" e_stop="24700"/>
          <exon e_start="24623" e_stop="24524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAATGTAAGGAAATTGTACTCTGGTGCTCTTCTTATAGTTATTATCAGATGCATCATGGCTTATGGATCTTGTTTTTTAGGTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATT</genome_strand>
        <mrna_strand>GGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT............................................................................GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAG-ATTGATCGTGATAGTTTTGCAATTGCTCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338722" ref_strand="+" ref_description="SGN-E338722 [cTOE-21-K15]">
      <seq>tcggcacgaggaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttgacgagaacaaattcaactttaccaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26178" stop="24512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25873" g_stop="25849" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="39" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="24812" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="352" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E338722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25873" e_stop="25849"/>
          <exon e_start="25124" e_stop="24812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGT</genome_strand>
        <mrna_strand>TGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213476" ref_strand="+" ref_description="SGN-E213476 [cLEC-71-D12]">
      <seq>accggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgataatgagccaattgaaaatgatgttcaaaccttgcctgaggaggagtgtcagatgtcattcttgaacgatttgttgttgggcttatgggaggagcggatgagccagggactatttcgatatgatgtgacaacctgtgagacgaaggtcattcctgggagatgtggttttattgcgcaactgaatgaggggcgccacctaaagaagcgcccaacagagttttgcattgataaggttcttcagccttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26432" stop="24539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26132" g_stop="25849" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="24839" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="570" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E213476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26132" e_stop="25849"/>
          <exon e_start="25124" e_stop="24839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGA</genome_strand>
        <mrna_strand>ACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320170" ref_strand="+" ref_description="SGN-E320170 [cTOB-21-P2]">
      <seq>gagagagaccaccggagcaccaaacgccacccaacaaccacccattcaattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcatttcagaatgatgataatgagccaattgaaaatgatgttcaaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26660" stop="24754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26360" g_stop="25849" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="25054" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="583" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E320170" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26360" e_stop="25849"/>
          <exon e_start="25124" e_stop="25054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTG</genome_strand>
        <mrna_strand>GAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTTCAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365365" ref_strand="+" ref_description="SGN-E365365 [cLPT-2-F8]">
      <seq>tgcaagagagagaccaccggagcaccaaacgccacccaacaaccacccattcaattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcagagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttctccttctcctaatttttcgtataagaactgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggattttcttgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatgacaatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26665" stop="24780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26365" g_stop="25849" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="25080" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="562" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E365365" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26365" e_stop="25849"/>
          <exon e_start="25124" e_stop="25080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGC</genome_strand>
        <mrna_strand>TGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAGAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTCTCCTTCTCCTAATTTTTCGTATAAGAACTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATTTTCTTGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGACAATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323736" ref_strand="+" ref_description="SGN-E323736 [cTOC-2-N12]">
      <seq>tgcaagagagagaccaccggagcaccaaacgccacccaacaaccacccattcaattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatgggttgtggccgcaagtgcctcggaaaatgctgcatgcctgtttcagtacttcctctatatgcattcaagaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26665" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26365" g_stop="25849" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25124" g_stop="25088" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="554" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E323736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26365" e_stop="25849"/>
          <exon e_start="25124" e_stop="25088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTGGTTTGTGTTCGATTCTTTAAATCTTTATCTTTCGGAATGTATAATTTTCTGAATGCTTTTTGCCCCTGTTTCTATATGTCTGGTGATTGATTATTAGGAGTAACAATTGTTCACAGATTATTTTAGAGTTGAGCAAACAATGCAAGGAAAGAATTACAGTTGTAATTATTATGTAGATTCAGCTTTTGCCAGTGCTATTGCCTCTTAAAGATCATGGGTTCCATTTTAAGATTTTTAGGGTTAATCTTTGGTATTTTAATGTGTATGGGTTCATATCTGCTATTTTAGTAAATTTCTGACAATAAATTATGTTCCACATCGAAAGTTATGGGTTCAATTGAACCCGTATGTGCAATGCTAGATACACCTATAATAGCATGAACATCTATATAACTATAGATGAATTTACACTCACTGAAAATGGTAAACCTGTAGTTTACTATTTGTAGTGTTAATGTTGCTTAGAGTTGATATAATCTAGTGGAGTATCTTAGGTTCGTTGATAATATGCGGCAAAATATCCACTTTGCATGCACCTTAATGCAGAAATAAGCAAACTGCATGTATTTTCCGGTGAAGCCAAAAGTGGGTCGCGTGCCTTTAATGATTTTGTTTATTATAGATCTATGTGGCTTCTGTTTCGTAGTGGATACATCTTGGTAAGTCAGATGTGTTAAGAATGAGGTTTGGGTTGTAGATTCATTATTTTGTTGCTTGATTTCAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGA</genome_strand>
        <mrna_strand>TGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265091" ref_strand="+" ref_description="SGN-E265091 [cLEI-2-H8]">
      <seq>atacgtgtgcaagagagagaccaccggagcaccaaacgcggcccaacaaccacgcatgggattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttcctcgccggcggcggtccaattcttcctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacagggaccgatgttgactgtaaagagggtgcctacactggtttccaactatcaagaggatgttctcgaaggtaacgtcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26672" stop="25587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26372" g_stop="25887" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E265091" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26372" e_stop="25887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTGTGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAG-GACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGG</genome_strand>
        <mrna_strand>ATACGTGTGCAAGAGAGAGACCACCGGAGCACCAAACGCGGCCCAACAACCACGCATGGGATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279595" ref_strand="+" ref_description="SGN-E279595 [cLER-5-N2]">
      <seq>gcaagagagagaccaccggagcaccaaacgccacccaacaaccacccattcaattcttctagaaaagaacatcttcctcaaaattatcgatgaaggatcgctcctcagtaattgttcgttgatcctacaaattcaatcacggctcttcttgaatctttcgtttgtattctcacaattcatcatcaccgcaaagtgttgacccttaatccaactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatctcctcttgctcgccggcggcggtccaattcttgctttctctttttccttctcctaatttttcgtataagagttgtatttttgattatccatccaagaacaggaccgatgttgactgttaagagggtgcctacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26664" stop="25632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26364" g_stop="25932" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E279595" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26364" e_stop="25932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACT</genome_strand>
        <mrna_strand>GCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTGCTCGCCGGCGGCGGTCCAATTCTTGCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTTAAGAGGGTGCCTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360235" ref_strand="+" ref_description="SGN-E360235 [cLPP-14-O10]">
      <seq>caactcttctggtggacgataagcaccggaccccttcccctcacggaggtaggggtgcctcacccgctgaaggcggttgcccctccgatcttctcttcctcgccggcggcggtccaattcttcctttctctttctccttctactaatttttcgtataagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="26456" stop="25697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26156" g_stop="25995" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E360235" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26156" e_stop="25995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGT</genome_strand>
        <mrna_strand>CAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTTCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTCTCCTTCTACTAATTTTTCGTATAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719503" ref_strand="+" ref_description="SGN-E719503 [FC08AC04]">
      <seq>gggcgattggcggccaatcggccgaattgagcttcatttcaaagttttgaatggagaatttgttgggtcttatgagagttcgtattcacagaggtattaatttggctattagagatgttactaccagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatgttgtattctggtctgttttttgattaaaaatttctgttaccaantgaaaaaaaaaaaaaaaaaaaaaaaaaaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30293" stop="28191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29989" g_stop="29860" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="161" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="257" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28491" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="647" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28490" i_stop="28201" i_length="290">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.576" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28200" g_stop="28191" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="657" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="673"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E719503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29989" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28491"/>
          <exon e_start="28200" e_stop="28191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTCAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAAATGAACTACTCAGTTTTGATTCACATTGTGATACTATTGTCTAACATAGTTTTGACGATTCAGGGTTGGGGTTGGGTGTACGCCTGCTTAGATCCGCCCCTGAAAAATTGAATTAGATTTATAAAACACATAACCTATAATCTAAATTTTGAAATATATTGAACCAATGAACTATAGGCAGCACAAATACTAATTTTGTTAGGGTAAAAGATGGGGAGAAGTATTCCTAATTTATATTTGTTTTGTTAATTTCATTTTTAAGCTATAGAGGGTTCACTATCTCCACTTTGCATAGAAGGAGAAAA</genome_strand>
        <mrna_strand>CTTCATTTCAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAANTGAA..................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353481" ref_strand="+" ref_description="SGN-E353481 [cTOS-15-M19]">
      <seq>ttgggtcttatgagagttcgtattcacagaggtattaatttggctattagagatgttactaccagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatgttgtattctgggctggtttttgattaaaaatttctggtaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30258" stop="28191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29958" g_stop="29860" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="195" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28487" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="589" r_length="394" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E353481" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29958" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAAATGAACTAC</genome_strand>
        <mrna_strand>TTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGGCTGGTTTTTGATTAAAAATTTCTGGTACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308570" ref_strand="+" ref_description="SGN-E308570 [cLEY-21-K9]">
      <seq>cagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatgttgtattctggtnctgttttttgattaaaaattttctgttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30196" stop="28191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29896" g_stop="29860" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="133" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28488" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="528" r_length="395" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E308570" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29896" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGT-CTGTTTTTTGATTAAAAA-TTTCTGTTACCAAATGAACTA</genome_strand>
        <mrna_strand>CAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTNCTGTTTTTTGATTAAAAATTTTCTGTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351896" ref_strand="+" ref_description="SGN-E351896 [cTOS-8-H9]">
      <seq>ttgggtcttatgagagttcgtattcacagaggtattaatttggctattagagatgttactaccagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatgttgtattctggtctgttttttgattaaaatttctgttaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30258" stop="28191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29958" g_stop="29860" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="195" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28489" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="586" r_length="391" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E351896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29958" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAAATGAACT</genome_strand>
        <mrna_strand>TTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATT-AAAATTTCTGTTACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311389" ref_strand="+" ref_description="SGN-E311389 [cLEZ-18-J4]">
      <seq>caaagttttgaatggagaatttgttgggtcttatgagagttcgtattcacagaggtattaatttggctattagagatgttactaccagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatgttgtattctggtctgttttttgattaaaaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30281" stop="28204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29981" g_stop="29860" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28504" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="595" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E311389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29981" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCT</genome_strand>
        <mrna_strand>CAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299220" ref_strand="+" ref_description="SGN-E299220 [cLET-43-I21]">
      <seq>gttgggtcttatgagagttcgtattcacagaggtattaatttggctattagagatgttactaccagcgatccttacgttgttgttaggatgggcaaacagaaattgaagactcgagtggtgaagaagaatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttattagattgcgaaatgttgagcgtggtgaaatagaactacaattgcagtggattgacattcctggttccaagggtgtgtagctaactactactatccatcaaatcatgtacagtcactatcctttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="30259" stop="28239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29959" g_stop="29860" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29119" g_stop="29024" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="196" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28880" g_stop="28539" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="538" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E299220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29959" e_stop="29860"/>
          <exon e_start="29119" e_stop="29024"/>
          <exon e_start="28880" e_stop="28539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAGGTAACGCCAATTTCATTTTTTTCTTCTCTTTTCTGCTGAACGAACAGCTATTACTTTTTTTTTTGTTGTTGTTCTTGATTTTCAGAAAATTGAAATTCTAGTAATAATGGGTTTTATAAATTTTGTAGTTTAGATAAAAACAGTGTTCGTCAATCTGCAGTTTTCTTGTAAAAAAATTTCTGAGTTATTATAAATTTGATAGTTTCCTCAAAAGGAATCGCCACCAATTTAGAGTGTACCAGACCCAGGGGCATCACCGGAATCCACCGAACACAAGACTATATTTTTATTTTGCGGACATCTTTTATGAAGATCTTGGACTTATTATTACAGACTTTAATTATTTTCGATAGATCATTAGTTAAAAATAATAATAATATAGAAACCATACCCTGTTTTTGTGTTAATCTCTGTTTTTTTTTTCTTTTTTTGCAAGGGTGATTATTTGGTCAACTTGCACGCTCCTCTATTGTTCGACCTATTGAATAATTGGGGCAGATGGAATAAATCGAATTTGAATCTTGATCATTTCTTTGTTGCTTGTGTTACCTTGACTAGTTCATATCTTAATTGGGTTCATTAAAAGAGAAGATAAAAAGACGACTACTTTTGAGTAATGAATTGCAGTAATAGATTTAAAACTAGTTTGGGCTTAGTTTTTGCCATGTTGATGACTGGCTTCTAACAAAATAAATACAAATATACTTCCTTGTTATGTTAATTATTAATATTTGGAGCAGAAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATG</genome_strand>
        <mrna_strand>GTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292528" ref_strand="+" ref_description="SGN-E292528 [cLET-16-N22]">
      <seq>aatctcaacccagaatggaatgaagaattaacactatctattaccgagccaattctcccaatcaaactgcatgtttatgacaaggatatattttctcttgacgataagatgggtgatgcagaagttgacatacagccatttatagatgcggcgagaaagcggtacaagaacatccctagtggaaccataatcacaaaaataaagccaagcaggcaaaattgtttctctgaagagagctccattgtgtgggaaaatgatcaggttgtacaaaatgtgtttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="29392" stop="28368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29092" g_stop="29024" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28880" g_stop="28668" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="282" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E292528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29092" e_stop="29024"/>
          <exon e_start="28880" e_stop="28668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTGGTAATTTCTTTCACTTTATTTCATCAAGGAATTAAACAGCACATAACCTTATTATCCGGCTTGTGTTAGCTTTGGTCCAAATCATGTATTTGTCTTTGGAAACTAATTGAATATGCACAACTCGCATCGATTCCTGATTGCAGCATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATT</genome_strand>
        <mrna_strand>AATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG...............................................................................................................................................CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698455" ref_strand="+" ref_description="SGN-E698455 [FA06BE07]">
      <seq>cccctttatttgccctcccctgcaattgctgtttcgagtttcctcctctaggaaggaattctttaattatggactgtaacctgcttaattcacttgggcaaacctgttttcctaggttcaaggtggaaaatatcgatggagttagaggaaatatgacttcatataaatcaagaataggtttctgtaggatgcatacattattttcagtccctacttggaaactcagcatcccatgtacttcttggaaaatattttgtgcccctgaaaattcactggcagtatccgagaaaatagaagacgctggtctgtctgatcctgaacaagttcctgatcaacctttgagaaccgaagacttgaagttattgcttgctgatgctgaaagatcgaagcttctcaagaaattgagtgaagccaaccgatataatcggttgcttaagcgagagttgcaagctaaggaggatgcgatggctaatttccaaagtgaactttcactcaccgaacttgagattcaggctttggctaaattggctgaacaaattgcaaaatctgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="36046" stop="39020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36345" g_stop="36393" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="55" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36394" i_stop="36481" i_length="88">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36482" g_stop="36541" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="115" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36542" i_stop="36838" i_length="297">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36839" g_stop="37076" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="353" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37077" i_stop="37256" i_length="180">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37257" g_stop="37346" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="443" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37347" i_stop="38316" i_length="970">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38317" g_stop="38385" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="512" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38386" i_stop="38678" i_length="293">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38679" g_stop="38720" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="554" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E698455" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36345" e_stop="36393"/>
          <exon e_start="36482" e_stop="36541"/>
          <exon e_start="36839" e_stop="37076"/>
          <exon e_start="37257" e_stop="37346"/>
          <exon e_start="38317" e_stop="38385"/>
          <exon e_start="38679" e_stop="38720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGCCCTCCCCTGCAATTGCTGTTTCGAGTTTCATCAGCTAGGAAGGTAAGTGGTTGAAATTTTGTATCTAATTAGAGTAGTATAACTGCATCCTTTTGCTTTTTTACTTGGAATCTTCTAAATTGTACTACAGGAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAGGTGATTTCTTCAACCCTGGAAAATTTTTATTTTAGGGTTTTCTTTTTCTTGGTTTGGGGACTCCAATTATACTGCAATGTGGAATCTTGATATGCATTCTCTCTCAATCTTGAACTGTATAGGTTCAACTACACTGATTTTGAATGTTGAATCCATCTTTTTATGTTTATGATTTTTTATTACCAATTTGTGTTTCCTTTTATTCTTTAATCTCCTTATGCATTATTCTGATCATACAATCTTGATCAAGAAAATGCTGACATATTCTGAATTTGTCTTTTTAATGGCAATGATAAGGTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAGGTAAGGTTTTCTATTACCCTGTTGCAGACCTTTATACTAGAAAACGAAACCTCATACAAAAGCCAAATGATTTTTTTCTTGTTCCTCCGTTTGGGGGAATGCTTCATTTCTTAATCGAGAATAATCTTTATTGTTGCTGCAAGTATATTGAGCTATACTGACTCTCTTCTATCTTTATAGTTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAGGTATATATTTTATTGGTCTCCTATTCAATCTCGTAAATTCTTCTTATGAGACTGATTACGTGGATGATTCTCCATTTGAGTGTCTGTAACGCATAAAGTTAGTGCTATGTGAGAGAAAAGTTACCTGCATAGTCAGGAGAGGATAGTGAAGTTCCAATCTTTCCCCTTGTGAGTATTTGGAAAGCCAACCATGAGAGAATATTTTTGCATTCCCTTAGACCTCCAAGTCCATCCCTTCTGGCCCTCACTAATATTTGATAAGTGTGGAAACATAGTCTCTGGTACTCAGGTCCTGTTAATAACTCGCATGGTTAGGCCTTTGGAAGCATATTCACAGCTTATGTCAGACTTTTAAGCTAACATAAAGATTAAGGTGGGGAATCCTAGATATACATGGTTTTGGAGAGATGCTTGGATAGGTCACAGACCTTCGAAGATCAAATACCAGGACCTTTATTTGTTTCACTACTAAGACAGGTAGTCTGGCCTCAGATTGTTGGAATGGGGGATGCTGGTGCATTACTTTTAGAAGGATTTGTTTTGATTGGGAGATACCTAAATGGCTCTCCTATTGGCTGATTTAGATAAGGTGGAGCTTTGTGTGAAGTATCTTGAGTCTATAATCCAGGGAAGTGGGGATCGACGATGATATGACACATCGTATTGGTGCAGCATAGATGAAGTGGAGACTTGCATCCGGAGTCTTGTGTGATAAAAAAGTACCACTGAAACTTAAAGGTGTTGTTTTATAGAGTGGTGGTTAGAACGACTTCCTTGAATTCCGGTGATCAGTTTTATATAGTAAGATCTGTTTCTGAGATTTCTGGATGCGATAGGTGAACTAAACTCATAGATAGTTGGGTTAAGTTAAAGGTTTATGACTACAGAAAAATAATGGAAAATGTGCTATATGGAAACTCTATGTTATTCTTTGTCTGACGATGACAATTAGTATGCCATATCACTGCAGTTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAGGTATGCTTCTTCTATCTTGGTGTTATTGTAATTTTATTGCTTCAGATGTAGTTCTAAGTATTTGGTGCGTTTGCATAAAGGTTATAAAAACCTATGGATTTGTGCCGTATTAACTGGAATGAGATTTATACTAAATGAAATTGTCTACACTTTGACAATGAAACTTACTGGGAACTAGAAGAGAAAAGTTAAACAGTTGATAATCCAACATTTGTGTGGGACTTCAACTCTAATTACTGGCATTAGCAGCTTATGCAGTATAAAGATAGCTTTTTATTTTATTTGACCTGCAGGCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATC</genome_strand>
        <mrna_strand>TATTTGCCCTCCCCTGCAATTGCTGTTTCGAGTTTCCTCCTCTAGGAAG........................................................................................GAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAG.........................................................................................................................................................................................................................................................................................................GTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTACTTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGCAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGATCAACCTTTGAGAACCGAAGAC....................................................................................................................................................................................TTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGCTAAGGAGGATGCGATGGCTAATTTCCAAAGTGAACTTTCACTCACCGAACTTGAGATTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGGCTAAATTGGCTGAACAAATTGCAAAATCTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707501" ref_strand="+" ref_description="SGN-E707501 [FA33AG08]">
      <seq>cgcttattgtactacaggaattctttaattatggactgtaacctgcttaattcacttgggcaaacctgttttcctaggttcaaggtggaaaatatcgatggagttagaggaaatatgacttcatataaatcaagaataggtttctgtaggatgcatacattattttcagtccctaattggaaactcagcatcccatgtacttcttggaaaatattttgtgcccctgaaaattcactggtagtatccgagaaaatagaagacgctggtctgtctgatcctgaacaagttcctgagcaacctttgagaaccgaagagttgaagttattgcttgctgatgctgaaagatcgaagcttctcaagaaattgagtgaagccaaccgatataatcggttgcttaagcgagagttgcaagctaaggaggatgcgatggttaatttcaaaagtgaactttcagtcaccgaacttgagattcaggctttggctagattggctgaagaaattgcaaaatctgctatccctgctggttcaagaaaaattaaaggcagatatatccaatcacacctattttcacgtttggaagccataagtgaaaaattgaaggagcaaataaagggcgtggaagctgtacaagccaaagaggttcctttatcctgggttggggtagcagagagtgtgcaagtaatgggctcctttgatggttggagtcaaggagagcacttatctccagagtacaccggctcttatatgaacttttcagctacattgttcctaagacctggaaggtacgaaattaagttcttggtagatgatgagtggaaactatccccagaattaccaactaccggagaggggttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="36170" stop="40152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36464" g_stop="36541" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36542" i_stop="36838" i_length="297">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36839" g_stop="37076" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="315" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37077" i_stop="37256" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37257" g_stop="37346" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="405" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37347" i_stop="38316" i_length="970">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38317" g_stop="38385" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38386" i_stop="38678" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38679" g_stop="38784" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="580" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38785" i_stop="38901" i_length="117">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38902" g_stop="38990" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="669" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38991" i_stop="39565" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39566" g_stop="39678" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="782" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39777" g_stop="39852" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="858" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E707501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36464" e_stop="36541"/>
          <exon e_start="36839" e_stop="37076"/>
          <exon e_start="37257" e_stop="37346"/>
          <exon e_start="38317" e_stop="38385"/>
          <exon e_start="38679" e_stop="38784"/>
          <exon e_start="38902" e_stop="38990"/>
          <exon e_start="39566" e_stop="39678"/>
          <exon e_start="39777" e_stop="39852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTGTACTACAGGAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAGGTGATTTCTTCAACCCTGGAAAATTTTTATTTTAGGGTTTTCTTTTTCTTGGTTTGGGGACTCCAATTATACTGCAATGTGGAATCTTGATATGCATTCTCTCTCAATCTTGAACTGTATAGGTTCAACTACACTGATTTTGAATGTTGAATCCATCTTTTTATGTTTATGATTTTTTATTACCAATTTGTGTTTCCTTTTATTCTTTAATCTCCTTATGCATTATTCTGATCATACAATCTTGATCAAGAAAATGCTGACATATTCTGAATTTGTCTTTTTAATGGCAATGATAAGGTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAGGTAAGGTTTTCTATTACCCTGTTGCAGACCTTTATACTAGAAAACGAAACCTCATACAAAAGCCAAATGATTTTTTTCTTGTTCCTCCGTTTGGGGGAATGCTTCATTTCTTAATCGAGAATAATCTTTATTGTTGCTGCAAGTATATTGAGCTATACTGACTCTCTTCTATCTTTATAGTTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAGGTATATATTTTATTGGTCTCCTATTCAATCTCGTAAATTCTTCTTATGAGACTGATTACGTGGATGATTCTCCATTTGAGTGTCTGTAACGCATAAAGTTAGTGCTATGTGAGAGAAAAGTTACCTGCATAGTCAGGAGAGGATAGTGAAGTTCCAATCTTTCCCCTTGTGAGTATTTGGAAAGCCAACCATGAGAGAATATTTTTGCATTCCCTTAGACCTCCAAGTCCATCCCTTCTGGCCCTCACTAATATTTGATAAGTGTGGAAACATAGTCTCTGGTACTCAGGTCCTGTTAATAACTCGCATGGTTAGGCCTTTGGAAGCATATTCACAGCTTATGTCAGACTTTTAAGCTAACATAAAGATTAAGGTGGGGAATCCTAGATATACATGGTTTTGGAGAGATGCTTGGATAGGTCACAGACCTTCGAAGATCAAATACCAGGACCTTTATTTGTTTCACTACTAAGACAGGTAGTCTGGCCTCAGATTGTTGGAATGGGGGATGCTGGTGCATTACTTTTAGAAGGATTTGTTTTGATTGGGAGATACCTAAATGGCTCTCCTATTGGCTGATTTAGATAAGGTGGAGCTTTGTGTGAAGTATCTTGAGTCTATAATCCAGGGAAGTGGGGATCGACGATGATATGACACATCGTATTGGTGCAGCATAGATGAAGTGGAGACTTGCATCCGGAGTCTTGTGTGATAAAAAAGTACCACTGAAACTTAAAGGTGTTGTTTTATAGAGTGGTGGTTAGAACGACTTCCTTGAATTCCGGTGATCAGTTTTATATAGTAAGATCTGTTTCTGAGATTTCTGGATGCGATAGGTGAACTAAACTCATAGATAGTTGGGTTAAGTTAAAGGTTTATGACTACAGAAAAATAATGGAAAATGTGCTATATGGAAACTCTATGTTATTCTTTGTCTGACGATGACAATTAGTATGCCATATCACTGCAGTTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAGGTATGCTTCTTCTATCTTGGTGTTATTGTAATTTTATTGCTTCAGATGTAGTTCTAAGTATTTGGTGCGTTTGCATAAAGGTTATAAAAACCTATGGATTTGTGCCGTATTAACTGGAATGAGATTTATACTAAATGAAATTGTCTACACTTTGACAATGAAACTTACTGGGAACTAGAAGAGAAAAGTTAAACAGTTGATAATCCAACATTTGTGTGGGACTTCAACTCTAATTACTGGCATTAGCAGCTTATGCAGTATAAAGATAGCTTTTTATTTTATTTGACCTGCAGGCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAGGTATTATTACCTTTCAATGGCATACAGTGCCAACCTTGTTAGATTGTAGATAAATGCTTATGAAAGAATTTAACCTGACATTTCTATGATTGATGTCTTGATACTTCCGTTCTTAAGCCATAAGTGAAAAATTGAAGGAGCAAATAAAGGGCGTGGAAGCTGTACAAGCCAAAGAGGTTCCTTTATCCTGGGTTGGGGTAGCAGAGGTGAGTTATTGAATAAGTTTCTTCTTTATCTGCTAACCATGTTGGAACTGTGGAATTCCTGACAATTGAAAGCTGTACAATCGAAATGACATGCATCCCCTGGTTAAAATTCTTGTGTGCATTGTGAAAATTGAAAACTTCGAAGCTGTTTCAGTTAGTCTGGTGTTACTATCTCTTCTTTTCGGCCCATTGAGATTGAAGTGGAAGCAGTATTATATCATTTCCCCTGGTTCTTCATTACTGCATGATCTTTCATACCTGTCCATTGTGCGCCCCCCCCCCCCCCCCCCCCATTTGGTATTTTAGGCTGGATTCCTAAATCATATAGCTGGAGTAGTATTAAAGTTCTATTTTGTTCATATTTCCTGCCAAATTCCTTATATGTACAAGGACTTCTGATCCAGAAGTTGGCACCGAGTTTTCTGCTACCACTTAATATGTTTTTCATTGGATACACGCTCCAGAAATTGACACCGAGCTTTCTCTATCACTTAAAATGTTTTTCATTGGATACACACTTTGGCAGTCGATTACAGAAGGCGTTAAATATGACCTTGAATTTTGATCGTCTTTAGAGTGTGCAAGTAATGGGCTCCTTTGATGGTTGGAGTCAAGGAGAGCACTTATCTCCAGAGTACACCGGCTCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAGGTGCGTTTCTCTTCTGCCACTGAGTTAAATCTGTCATTGCACTCTCTCTGAACTCTCAAGTGAAATTTTAAAAAATAATAATATATTTGTATTTTTAGGTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACT</genome_strand>
        <mrna_strand>CGCTTA-TTGTACTACAGGAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAG.........................................................................................................................................................................................................................................................................................................GTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAG....................................................................................................................................................................................TTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAG.....................................................................................................................CCATAAGTGAAAAATTGAAGGAGCAAATAAAGGGCGTGGAAGCTGTACAAGCCAAAGAGGTTCCTTTATCCTGGGTTGGGGTAGCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAAGTAATGGGCTCCTTTGATGGTTGGAGTCAAGGAGAGCACTTATCTCCAGAGTACACCGGCTCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG..................................................................................................GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324035" ref_strand="+" ref_description="SGN-E324035 [cTOC-3-E23]">
      <seq>ttttcctaggtgatttcttcaaccctggaaaatttttattttagggttttctttttcttggtttggggactccaattatactgcaatgtggaatcttgatatgcattctctctcaatcttgaactgtataggttcaactacactgattttgaatgttgaatccatctttttatgtttatgattttttattaccaatttgtgtttccttttattctttaatctccttatgcattattctgatcatacaatcttgatcaagaaaatgctgacatattctgaatttgtctttttaatggcaatgataaggttcaaggtggaaaatatcgatggagttagaggaaatatgacttcatataaatcaagaataggtttctgtaggatgcatacattattttcagtccctaattggaaactcagcatcccatgtacttcttggaaaataatttgtgcccctgaaaattcactgtagtatccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="36233" stop="37310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36533" g_stop="37010" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E324035" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36533" e_stop="37010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTAGGTGATTTCTTCAACCCTGGAAAATTTTTATTTTAGGGTTTTCTTTTTCTTGGTTTGGGGACTCCAATTATACTGCAATGTGGAATCTTGATATGCATTCTCTCTCAATCTTGAACTGTATAGGTTCAACTACACTGATTTTGAATGTTGAATCCATCTTTTTATGTTTATGATTTTTTATTACCAATTTGTGTTTCCTTTTATTCTTTAATCTCCTTATGCATTATTCTGATCATACAATCTTGATCAAGAAAATGCTGACATATTCTGAATTTGTCTTTTTAATGGCAATGATAAGGTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAG</genome_strand>
        <mrna_strand>TTTTCCTAGGTGATTTCTTCAACCCTGGAAAATTTTTATTTTAGGGTTTTCTTTTTCTTGGTTTGGGGACTCCAATTATACTGCAATGTGGAATCTTGATATGCATTCTCTCTCAATCTTGAACTGTATAGGTTCAACTACACTGATTTTGAATGTTGAATCCATCTTTTTATGTTTATGATTTTTTATTACCAATTTGTGTTTCCTTTTATTCTTTAATCTCCTTATGCATTATTCTGATCATACAATCTTGATCAAGAAAATGCTGACATATTCTGAATTTGTCTTTTTAATGGCAATGATAAGGTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATAATTTGTGCCCCTGAAAATTCACT-GTAGTATCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279321" ref_strand="-" ref_description="SGN-E279321 [cLEL-4-P15](-)">
      <seq>gcacgaggtctgatcctgaacaagttcctgagcaacctttgagaaccgaagagttgaagttattgcttgctgatgctgccagatcgaagcttctcaagaaattgagtgaagccaaccgatataatcggttgcttaagcgagagttgcaagctaaggaggatgcgatggttaatttcaaaagtgaactttcagtcaccgaacttgagattcaggctttggctagattggctgaagaaattgcaaaatctgctatccctgctggttcaagaaaaattaaaggcagatatatccaatcacacctattttcacgtttggaagccataagtgaaaatttgaaggagcaaattaagggcgtggaagctgtacaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="36731" stop="39254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37023" g_stop="37076" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37077" i_stop="37256" i_length="180">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37257" g_stop="37346" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="143" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37347" i_stop="38316" i_length="970">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38317" g_stop="38385" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="212" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38386" i_stop="38678" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38679" g_stop="38784" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="318" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38785" i_stop="38901" i_length="117">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38902" g_stop="38954" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="371" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E279321" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37023" e_stop="37076"/>
          <exon e_start="37257" e_stop="37346"/>
          <exon e_start="38317" e_stop="38385"/>
          <exon e_start="38679" e_stop="38784"/>
          <exon e_start="38902" e_stop="38954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAGGTAAGGTTTTCTATTACCCTGTTGCAGACCTTTATACTAGAAAACGAAACCTCATACAAAAGCCAAATGATTTTTTTCTTGTTCCTCCGTTTGGGGGAATGCTTCATTTCTTAATCGAGAATAATCTTTATTGTTGCTGCAAGTATATTGAGCTATACTGACTCTCTTCTATCTTTATAGTTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAGGTATATATTTTATTGGTCTCCTATTCAATCTCGTAAATTCTTCTTATGAGACTGATTACGTGGATGATTCTCCATTTGAGTGTCTGTAACGCATAAAGTTAGTGCTATGTGAGAGAAAAGTTACCTGCATAGTCAGGAGAGGATAGTGAAGTTCCAATCTTTCCCCTTGTGAGTATTTGGAAAGCCAACCATGAGAGAATATTTTTGCATTCCCTTAGACCTCCAAGTCCATCCCTTCTGGCCCTCACTAATATTTGATAAGTGTGGAAACATAGTCTCTGGTACTCAGGTCCTGTTAATAACTCGCATGGTTAGGCCTTTGGAAGCATATTCACAGCTTATGTCAGACTTTTAAGCTAACATAAAGATTAAGGTGGGGAATCCTAGATATACATGGTTTTGGAGAGATGCTTGGATAGGTCACAGACCTTCGAAGATCAAATACCAGGACCTTTATTTGTTTCACTACTAAGACAGGTAGTCTGGCCTCAGATTGTTGGAATGGGGGATGCTGGTGCATTACTTTTAGAAGGATTTGTTTTGATTGGGAGATACCTAAATGGCTCTCCTATTGGCTGATTTAGATAAGGTGGAGCTTTGTGTGAAGTATCTTGAGTCTATAATCCAGGGAAGTGGGGATCGACGATGATATGACACATCGTATTGGTGCAGCATAGATGAAGTGGAGACTTGCATCCGGAGTCTTGTGTGATAAAAAAGTACCACTGAAACTTAAAGGTGTTGTTTTATAGAGTGGTGGTTAGAACGACTTCCTTGAATTCCGGTGATCAGTTTTATATAGTAAGATCTGTTTCTGAGATTTCTGGATGCGATAGGTGAACTAAACTCATAGATAGTTGGGTTAAGTTAAAGGTTTATGACTACAGAAAAATAATGGAAAATGTGCTATATGGAAACTCTATGTTATTCTTTGTCTGACGATGACAATTAGTATGCCATATCACTGCAGTTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAGGTATGCTTCTTCTATCTTGGTGTTATTGTAATTTTATTGCTTCAGATGTAGTTCTAAGTATTTGGTGCGTTTGCATAAAGGTTATAAAAACCTATGGATTTGTGCCGTATTAACTGGAATGAGATTTATACTAAATGAAATTGTCTACACTTTGACAATGAAACTTACTGGGAACTAGAAGAGAAAAGTTAAACAGTTGATAATCCAACATTTGTGTGGGACTTCAACTCTAATTACTGGCATTAGCAGCTTATGCAGTATAAAGATAGCTTTTTATTTTATTTGACCTGCAGGCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAGGTATTATTACCTTTCAATGGCATACAGTGCCAACCTTGTTAGATTGTAGATAAATGCTTATGAAAGAATTTAACCTGACATTTCTATGATTGATGTCTTGATACTTCCGTTCTTAAGCCATAAGTGAAAAATTGAAGGAGCAAATAAAGGGCGTGGAAGCTGTACAAGCC</genome_strand>
        <mrna_strand>GCACGA-GGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAG....................................................................................................................................................................................TTGAAGTTATTGCTTGCTGATGCTGCCAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAG.....................................................................................................................CCATAAGTGAAAATTTGAAGGAGCAAATTAAGGGCGTGGAAGCTGTACAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357841" ref_strand="+" ref_description="SGN-E357841 [cTOS-24-I22]">
      <seq>tcttatatgaacttttcagctacattgttcctaagacctggaaggtacgaaattaagttcttggtagatgatgagtggaaactatccccagaattaccaactaccggagaggggttaactaagaacaatttattggtcgtggaatagctcatttagctaggacaggtgctgaaagtttgtactataggtggaaaaacaacttgttaatcgtcgtacagttgatctcaggactcttaagcagcgtagctcatgaggtgggattgctcaagacatctaattcgctcgacctactattaactcaaagtgttgaaggtatatataatagaccagacctcctaaagtggtggtataaagggcgatccaagacttccgtttttctcttataaagtcttgagttgaatgttcagactctttcgaaaatgtttggaagcttttggtaaaaaggtttatttttaaaaaagtgaggtatttatttggctgagcttttattttttaaaataagttgtactatcaccacaaatttaagtgaaatgattctgttcgatttatcagatgaatctgataataaatgtctccaattttgtatgatttacatctaacccacctccattgttaatagttagtagtccgtacattaaactttgatgattcaaaaaaatcagagccgcgactttattatttagtatatacaacaaccctaatattatattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="39335" stop="40871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39635" g_stop="39678" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39974" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="242" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39975" i_stop="40100" i_length="126">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40101" g_stop="40574" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="716" r_length="474" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E357841" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39635" e_stop="39678"/>
          <exon e_start="39777" e_stop="39974"/>
          <exon e_start="40101" e_stop="40574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAGGTGCGTTTCTCTTCTGCCACTGAGTTAAATCTGTCATTGCACTCTCTCTGAACTCTCAAGTGAAATTTTAAAAAATAATAATATATTTGTATTTTTAGGTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGCGTATGTATGATACTTAACTATCAGCTAGCTTTCAAGTCATACAATTGTATAAGCTTCAGCCATATATATATATATATATATTCGTTTTTTCTTGAATTTTAAAAAAGGGAGGATTTGATTCAACAGGTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAATCAGAGCCGCGACTTTATTATTTAGTATATACAACAACCCTAATATTATATTATAGTT</genome_strand>
        <mrna_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG..................................................................................................GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGC..............................................................................................................................GTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAATCAGAGCCGCGACTTTATTATTTAGTATATACAACAACCCTAATATTATATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350458" ref_strand="+" ref_description="SGN-E350458 [cTOS-5-L18]">
      <seq>tcttatatgaacttttcagctacattgttcctaagacctggaaggtacgaaattaagttcttggtagatgatgagtggaaactatccccagaattaccaactaccggagaggggttaactaagaacaatttattggtcgtggaatagctcatttagctaggacaggtgctgaaagtttgtactataggtggaaaaacaacttgttaatcgtcgtacagttgatctcaggactcttaagcagcgtagctcatgaggtgggattgctcaagacatctaattcgctcgacctactattaactcaaagtgttgaaggtatatataatagaccagacctcctaaagtggtggtataaagggcgatccaagacttccgtttttctcttataaagtcttgagttgaatgttcagactctttcgaaaatgtttggaagcttttggtaaaaaggtttatttttaaaaaagtgaggtatttatttggctgagcttttattttttaaaataagttgtactatcaccacaaatttaagtgaaatgattctgttcgatttatcagatgaatctgataataaatgtctccaattttgtatgatttacatctaacccacctccattgttaatagttagtagtccgtacattaaactttgatgattcaaaaaaatcagagccgcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="39335" stop="40829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39635" g_stop="39678" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39974" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="242" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39975" i_stop="40100" i_length="126">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40101" g_stop="40529" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="671" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E350458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39635" e_stop="39678"/>
          <exon e_start="39777" e_stop="39974"/>
          <exon e_start="40101" e_stop="40529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAGGTGCGTTTCTCTTCTGCCACTGAGTTAAATCTGTCATTGCACTCTCTCTGAACTCTCAAGTGAAATTTTAAAAAATAATAATATATTTGTATTTTTAGGTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGCGTATGTATGATACTTAACTATCAGCTAGCTTTCAAGTCATACAATTGTATAAGCTTCAGCCATATATATATATATATATATTCGTTTTTTCTTGAATTTTAAAAAAGGGAGGATTTGATTCAACAGGTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAATCAGAGCCGCGAC</genome_strand>
        <mrna_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG..................................................................................................GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGC..............................................................................................................................GTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAATCAGAGCCGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349950" ref_strand="+" ref_description="SGN-E349950 [cTOS-3-L2]">
      <seq>tcttatatgaacttttcagctacattgttcctaagacctggaaggtacgaaattaagttcttggtagatgatgagtggaaactatccccagaattaccaactaccggagaggggttaactaagaacaatttattggtcgtggaatagctcatttagctaggacaggtgctgaaagtttgtactataggtggaaaaacaacttgttaatcgtcgtacagttgatctcaggactcttaagcagcgtagctcatgaggtgggattgctcaagacatctaattcgctcgacctactattaactcaaagtgttgaaggtatatataatagaccagacctcctaaagtggtggtataaagggcgatccaagacttccgtttttctcttataaagtcttgagttgaatgttcagactctttcgaaaatgtttggaagcttttggtaaaaaggtttatttttaaaaaagtgaggtatttatttggctgagcttttattttttaaaataagttgtactatcaccacaaatttaagtgaaatgattctgttcgatttatcagatgaatctgataataaatgtctccaattttgtatgatttacatctaacccacctccattgttaatagttagtagtccgtacatttaactttgatgattcaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="39335" stop="40817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39635" g_stop="39678" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39974" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="242" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39975" i_stop="40100" i_length="126">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40101" g_stop="40517" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="659" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E349950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39635" e_stop="39678"/>
          <exon e_start="39777" e_stop="39974"/>
          <exon e_start="40101" e_stop="40517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAGGTGCGTTTCTCTTCTGCCACTGAGTTAAATCTGTCATTGCACTCTCTCTGAACTCTCAAGTGAAATTTTAAAAAATAATAATATATTTGTATTTTTAGGTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGCGTATGTATGATACTTAACTATCAGCTAGCTTTCAAGTCATACAATTGTATAAGCTTCAGCCATATATATATATATATATATTCGTTTTTTCTTGAATTTTAAAAAAGGGAGGATTTGATTCAACAGGTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAAT</genome_strand>
        <mrna_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG..................................................................................................GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGC..............................................................................................................................GTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTTAACTTTGATGATTCAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355082" ref_strand="+" ref_description="SGN-E355082 [cTOS-18-K6]">
      <seq>tcttatatgaacttttcagctacattgttcctaagacctggaaggtacgaaattaagttcttggtagatgatgagtggaaactatccccagaattaccaactaccggagaggggttaactaagaacaatttattggtcgtggaatagctcatttagctaggacaggtgctgaaagtttgtactataggtggaaaaacaacttgttaatcgtcgtacagttgatctcaggactcttaagcagcgtagctcatgaggtgggattgctcaagacatctaattcgctcgacctactattaactcaaagtgttgaaggtatatataatagaccagacctcctaaagtggtggtataaagggcgatccaagacttccgtttttctcttataaagtcttgagttgaatgttcagactctttcgaaaatgtttggaagcttttggtaaaaaggtttatttttaaaaaagtgaggtatttatttggctgagcttttattttttaaaataagttgtactatcaccacaaatttaagtgaaatgattctgttcgatttatcagatgaatctgataataaatgtctccaattttgtatgatttacatctaacccacctccattgttaatagttagtagtccggacattaaactttgatgattcaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="39335" stop="40815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39635" g_stop="39678" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39974" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="242" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39975" i_stop="40100" i_length="126">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40101" g_stop="40516" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="658" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E355082" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39635" e_stop="39678"/>
          <exon e_start="39777" e_stop="39974"/>
          <exon e_start="40101" e_stop="40516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAGGTGCGTTTCTCTTCTGCCACTGAGTTAAATCTGTCATTGCACTCTCTCTGAACTCTCAAGTGAAATTTTAAAAAATAATAATATATTTGTATTTTTAGGTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGCGTATGTATGATACTTAACTATCAGCTAGCTTTCAAGTCATACAATTGTATAAGCTTCAGCCATATATATATATATATATATTCGTTTTTTCTTGAATTTTAAAAAAGGGAGGATTTGATTCAACAGGTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAA</genome_strand>
        <mrna_strand>TCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG..................................................................................................GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGC..............................................................................................................................GTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGGACATTAAACTTTGATGATTCAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367230" ref_strand="+" ref_description="SGN-E367230 [cLPT-5-A12]">
      <seq>aatggctatggcaatagctcttcggaggctttctgctacaattgacgagccagttaagagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60060" stop="63113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60360" g_stop="60450" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="142" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="229" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="351" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="428" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="553" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62780" g_stop="62813" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="587" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E367230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60360" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATAT</genome_strand>
        <mrna_strand>AATGGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACGAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739081" ref_strand="+" ref_description="SGN-E739081 [LC16AC04]">
      <seq>cgctatggcaatagctcttcggaggctttctgctacaattgacaagccagttaagagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60064" stop="63172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60363" g_stop="60450" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="139" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="348" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="425" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="550" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="643" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E739081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60363" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG</genome_strand>
        <mrna_strand>CGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295714" ref_strand="+" ref_description="SGN-E295714 [cLET-25-N4]">
      <seq>gctatggcaatagctcttcggaggctttctgctacaattgacaagccagttaagagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60064" stop="67153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60364" g_stop="60450" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="138" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="225" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61644" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="290" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61645" i_stop="66702" i_length="5058">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66703" g_stop="66853" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="441" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E295714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60364" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61644"/>
          <exon e_start="66703" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>GCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740334" ref_strand="+" ref_description="SGN-E740334 [LC21AA06]">
      <seq>ctgtcaatagctcttcggaggctttctgctacaattgacaagccagttaagagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgaagaaaagtgccacactctttangccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttggcctaaagagtgtggcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60068" stop="63925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60367" g_stop="60450" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="135" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="222" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="344" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="421" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="546" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="639" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="733" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63599" g_stop="63624" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="759" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E740334" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60367" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCG-AGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTT</genome_strand>
        <mrna_strand>CTGTCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGAAAAGTGCCACACTCTTTANGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269317" ref_strand="+" ref_description="SGN-E269317 [cLEM-18-L5]">
      <seq>atagctcttcggaggctttctgctacaattgacaagccagttaagagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatgggggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60073" stop="62391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60373" g_stop="60450" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="129" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="216" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="338" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="415" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61986" g_stop="62091" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="521" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E269317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60373" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACA</genome_strand>
        <mrna_strand>ATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367547" ref_strand="+" ref_description="SGN-E367547 [cLPT-7-J11]">
      <seq>gagtctttacaatggaggctctatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgcccatggaaggggctcgaactcattccatcagaaaatttacttccgtttcggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60117" stop="61927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60417" g_stop="60450" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="85" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="172" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.796" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61627" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="219" r_length="47" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E367547" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60417" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTTACAATGGAGGCTCTATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATG</genome_strand>
        <mrna_strand>GAGTCTTTACAATGGAGGCTCTATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCCATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTT-ACTTCCGTTTCGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281027" ref_strand="+" ref_description="SGN-E281027 [cLER-7-B24]">
      <seq>tatctattacatgtcatcactgcctaatgaagctgtatacgacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttactcatggtggacatctttctcatggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60235" stop="62408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60438" g_stop="60450" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60545" g_stop="60595" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="64" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="151" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="273" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="350" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61986" g_stop="62108" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="473" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E281027" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60438" e_stop="60450"/>
          <exon e_start="60545" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTATTACATGGTTTGTATTTATAACTTGTTTATTTATTATTTATAGTAGTACTATGTATTACTTTTCCTTTTAAGTTATATTTACTTTGCGTTGTTTGTTGCAGTCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATC</genome_strand>
        <mrna_strand>TATCTATTACATG..............................................................................................TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTACTCATGGTGGACATCTTTCTCATGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249257" ref_strand="+" ref_description="SGN-E249257 [cLEF-50-D6]">
      <seq>gacaaggaaaaatccggagtagcttggccaaagcaactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaagttggatcctgcaaaatggggagtgaatgtgcagcctctatcaagatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60272" stop="63143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60572" g_stop="60595" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60686" g_stop="60772" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="111" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="233" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="310" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="435" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62780" g_stop="62843" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="499" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E249257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60572" e_stop="60595"/>
          <exon e_start="60686" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGGAAAAATCCGGAGTAGCTGTAAGTTCATGATGAATTGGAATAGATGTGTTATCTGAACTTTTGCTTGTGTTCTTTTCATTTCTGAGTTGAAATCCTGAATACTTTCAGTGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATG</genome_strand>
        <mrna_strand>GACAAGGAAAAATCCGGAGTAGCT..........................................................................................TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAAGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAAGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365530" ref_strand="+" ref_description="SGN-E365530 [cLPT-12-I19]">
      <seq>caactgaatgctccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccacaaacgtgctttggaagcattcaagttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctcattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggctatattgactatgaccagctcgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60395" stop="63176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60695" g_stop="60772" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="200" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="277" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="402" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="495" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E365530" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60695" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG</genome_strand>
        <mrna_strand>CAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCACAAACGTGCTTTGGAAGCATTCAAGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTCATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGCTATATTGACTATGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367701" ref_strand="+" ref_description="SGN-E367701 [cLPT-14-P16]">
      <seq>tccactagaggttgttgatcctgagattgctgacattattgagcatgagaaagcacgccaatggaaggggctcgaactcattccatcagaaaatttcacttccgtttcggtgatgcaagcagttggatcagtcatgactaacaagtacagtgaaggatatcctggtgccagatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcacaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggctatattgactatgaccagctcgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="60406" stop="63176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60706" g_stop="60772" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61580" g_stop="61701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="189" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="266" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="391" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="484" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E367701" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60706" e_stop="60772"/>
          <exon e_start="61580" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAGGTTCTATCGCCTTCTCTTTTCTTTTTCTTTCCATCTCTCACTCACTGAAGCTTACCGCAAAGGAATTAAGGCTCAGACTGTAGCAAATTAGAACATTTAACTAGTAATACTTGGGAACCTGTGCCAAACATTGATGTTTCAGTTTCAATAAACAAGTCTATATGAAACCTTGCATGCTTTCTCGGCGCACGAGGCTTATCTAGTGTGGTTTACTTTCTGCTGTGATTTACGGGCTATTACACTGGAGCATGGTTTACCCTATGTGCATCCAAAGTGTAGTGGTTGTGGGTTCCCTTGTCATAAAAAAAATAAAGAAGCCTATATGAAATATCTTTTAGATATATTTAGTATCGGTGATGTCCATGTGAGTTTGCCCACACCTCAATTATTCCACCAAATATTGGCTACCTAGGGTCGGTACAGCTAACAGGGGATATTCTGCCCCCAAAGGCTTAGATAGATGGGGAAAAATTACCTGGTGTTGTTTGTGTCGGCTGGGATTTGGCTCCGGGTATGCCATTGTTTTGACTCCCTTTATTGTCCTCCAGACTACACCTTTGAGTAAAACTGCCTTTCAGATTACTTCATGGGGAGTTCCAACTTCCAACTGCTGAAATTAATTTAACTTATCAATCTCCTGTTAAGAGCATTGAATGCTAAGAATTATATAGTATGTCTCATTTCTTTTACTCTTCTTATCACGTATAGCATCCATTCTGCTAGTTATCTTTCTTTTGTTTAAGATGCGAAGAAGCAGTTAGCTATGGAAGTTAAATGTCTTACCTAAGTTCAAAATGCTTTCTTTAGGGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG</genome_strand>
        <mrna_strand>TCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCACAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGCTATATTGACTATGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249909" ref_strand="+" ref_description="SGN-E249909 [cLEF-57-J22]">
      <seq>agcagttggatcagtcatgactaacaagcgcagcgaaggatatcctgttgccacatactatggaggaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcggggtgtatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttangccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61330" stop="64013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61630" g_stop="61701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="149" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="274" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="367" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="460" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63599" g_stop="63713" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="575" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E249909" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61630" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAA</genome_strand>
        <mrna_strand>AGCAGTTGGATCAGTCATGACTAACAAGCGCAGCGAAGGATATCCTGTTGCCACATACTATGGAGGAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCGGGGTGTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTANGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316756" ref_strand="+" ref_description="SGN-E316756 [cTOB-5-P18]">
      <seq>gaaatgagtacatagacatggcagaaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatgatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattantggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgatttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61521" stop="64056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61695" g_stop="61701" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61821" g_stop="61897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="84" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="209" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="302" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63599" g_stop="63756" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="553" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E316756" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61695" e_stop="61701"/>
          <exon e_start="61821" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAGTACGCACAATATTTGCTATTTTTTAACTCTTAAGACTTTTGTCATTAACCTGTATTTTCATGTCATATATCAACTTCAGATTTTATTTTAACATTATGAAGAATGGGTGGCTGTCCAGGTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTA</genome_strand>
        <mrna_strand>GAAATGA.......................................................................................................................GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATGATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTANTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316768" ref_strand="+" ref_description="SGN-E316768 [cTOB-6-E3]">
      <seq>gacatggcataaaccttatgccagaaacgtgctttggaagcattcaggttggatcctgcaaaatggggagtgaatgtgcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatgagggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattattggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtgccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61528" stop="64073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61828" g_stop="61897" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="195" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="288" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="381" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63599" g_stop="63773" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="556" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E316768" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61828" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAG</genome_strand>
        <mrna_strand>GACATGGCATAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATGAGGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTATTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTGCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269214" ref_strand="+" ref_description="SGN-E269214 [cLEI-16-D4]">
      <seq>ctgcaaaatggggagtgaatgtgcagcctctatcacgatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61682" stop="64062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61883" g_stop="61897" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61986" g_stop="62110" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="140" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="233" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="326" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63599" g_stop="63762" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="490" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E269214" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61883" e_stop="61897"/>
          <exon e_start="61986" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAAATGGGGAGGTAATAAATTTTGTTCTATTATGTTTCATCGTCTAAATAGTGCTAGAAACTAAAAGTACTCATCTCAATTAACCTTTTCTTATTGCAGTGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAA</genome_strand>
        <mrna_strand>CTGCAAAATGGGGAG........................................................................................TGAATGTGCAGCCTCTATCACGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248494" ref_strand="+" ref_description="SGN-E248494 [cLEF-59-N14]">
      <seq>gcagcctctatcaggatcacccgctaattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaagtggtccccacaatcacaccatcactggattggcagttgccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61693" stop="64328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61993" g_stop="62110" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="211" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="304" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="502" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63928" g_stop="64028" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="603" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E248494" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61993" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAA</genome_strand>
        <mrna_strand>GCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAAGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364820" ref_strand="+" ref_description="SGN-E364820 [cLPT-4-G4]">
      <seq>taattttcatgtttacactgcattattaaaacctcatgagagaatcatggctcttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggctatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtatgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactttgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61717" stop="64313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62017" g_stop="62110" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="187" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="280" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="478" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63928" g_stop="64013" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="564" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E364820" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62017" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATT</genome_strand>
        <mrna_strand>TAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGCTATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTATGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTTTGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294224" ref_strand="+" ref_description="SGN-E294224 [cLET-14-I3]">
      <seq>cttgatcttcctcatggtggacatctttctcatggatatcagactgatacaaagaagatatctgcagtctctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="61769" stop="63994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62069" g_stop="62110" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62780" g_stop="62872" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="135" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="228" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63599" g_stop="63694" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="324" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E294224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62069" e_stop="62110"/>
          <exon e_start="62780" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAGGTGCTTCTATATTTTGTTGTTTCTCGTCGTATATGACTGGTTTCTGTTGTTGCAAACTAATACCATTACTTAAAAAAGTGTGGGCACTTAAGAAGCTTGCACTAGTATTTGTGGTGTAAATACTGTAATCCTTCTAGGGTCCTTTGTAATAGGCAATTAATGTTTTCTGGGCTTCTATGAGGTGCATTTACTACTTATGTTCCTCTGCCTTACCATTCTCGTGGATGAGGAATTTCACTCGGACAAAGGCCAACATCCCATAAATTTTATCTGATATGTGAGTAAAGGACAATTTAAACTGAAATGCTGTTAAATATGGCTGTATGCAATTTCTGTCAGGTTGTTTTATATATTGCATTGATCTTTGATAGTTAAAATGTTCTGTATGCTTTTCCGCTTTAGAAGAGCAAACTTTTCTGCTTTAAAATCACGCATGATCTTAAAAATGGAAGTTATTGCTGGTAAAATTTGAGAAAAATGAAGTTAAAACACATGTGAGTTGATGCATATATGAGTCCATGTCCCAATTATGTTCATACATTCCATACAGATCTGGAGTTAGAGTCAGCTTATTTTTGGAAAACCTTGATTTCTTCTTTCTAGTGCAATTATTGTTTGATTTAATTTTAGTTACATTAATACAGCATGTCTTATGTTTATTAATCACAGACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCT</genome_strand>
        <mrna_strand>CTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290183" ref_strand="+" ref_description="SGN-E290183 [cLET-5-K17]">
      <seq>ctatattctttgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="62508" stop="64962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62808" g_stop="62872" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="158" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="356" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="461" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64619" g_stop="64662" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="505" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E290183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62808" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAG</genome_strand>
        <mrna_strand>CTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287270" ref_strand="+" ref_description="SGN-E287270 [cLES-15-M23]">
      <seq>tgagacaatgccatacagactcgatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="62518" stop="65503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62818" g_stop="62872" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="148" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="346" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="451" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="517" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65130" g_stop="65203" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="591" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E287270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62818" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAA</genome_strand>
        <mrna_strand>TGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282443" ref_strand="+" ref_description="SGN-E282443 [cLER-18-C13]">
      <seq>gatgagagcactggatatattgactatgaccagctcgagaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="62540" stop="64268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62840" g_stop="62872" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63388" g_stop="63480" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="126" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="324" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63928" g_stop="63968" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="365" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E282443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62840" e_stop="62872"/>
          <exon e_start="63388" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="63968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGAGCACTGGATATATTGACTATGACCAGGTAGTTTTCTGCTTTCTTATAGTTCTATTCATTTGATCTCTACCCTTCACCCTCTCCTTTTGAATGGCGTACCCCTATAATCATATTCAGCATTGTAAATCAAATTTCTTTTTAAGAGTTCGTTTTCATTCGTCAAAAGTTATGTAGAGTCACTAAGTATAATATAGCATGATGAAAACTAGAAGTAATTTAATGCGATATCAGAAAGTCCATCTTGATTCAGCATAATATGATGTCCAGATAACTTGTCATTAGTATGAGACAATAAGTTGGAGCTAGCATTGCCTCCATTATTTTATTTTTCAGATTATTTTGATGTTTCTTTTACTTCTTACAACTGATTTTTCATCTGGTTATGTTAGCTAGTGTAATAGAAACTTGTCAGTCATAAATGTTTATTCAGATAATCAGTACTATTGAAGGCTAATCCACTTCACTGTGTGCTTGTAATGTTAGATTTTTATTAACGGATACCTATTCTCTTTTAACATTTCATGACTTATCTTTTTCTGCAGCTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTT</genome_strand>
        <mrna_strand>GATGAGAGCACTGGATATATTGACTATGACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300504" ref_strand="+" ref_description="SGN-E300504 [cLET-45-J8]">
      <seq>agaaaagtgccacactctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacatgggtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63092" stop="65510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63392" g_stop="63480" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="287" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="458" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="536" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65452" g_stop="65459" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="544" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E300504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63392" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGA</genome_strand>
        <mrna_strand>AGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACATG....................................................................................................................................................................................................................................................GGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738773" ref_strand="+" ref_description="SGN-E738773 [LC14DG02]">
      <seq>ctttaggccaaaattgattgttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttcccctacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63108" stop="66546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63408" g_stop="63480" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="271" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="376" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="442" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="520" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="632" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="743" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66132" g_stop="66246" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="858" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E738773" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63408" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGG</genome_strand>
        <mrna_strand>CTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCCTACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344314" ref_strand="+" ref_description="SGN-E344314 [cTOF-16-O16]">
      <seq>gttgctggtgctagtgcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagaatttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63127" stop="66500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63427" g_stop="63480" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="252" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="357" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="423" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="501" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="613" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="724" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66132" g_stop="66200" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="793" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E344314" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63427" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAAC</genome_strand>
        <mrna_strand>GTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGAATTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704940" ref_strand="+" ref_description="SGN-E704940 [FA25CG11]">
      <seq>gaggcctacgcacgtctttatgactatgacagaatccggaaggtttgcaacaaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaacccctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtaccaacactagaatccagtgctccaatcaagtctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63139" stop="66491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63438" g_stop="63480" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63599" g_stop="63796" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="240" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="411" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="489" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="601" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="712" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66132" g_stop="66191" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="772" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E704940" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63438" e_stop="63480"/>
          <exon e_start="63599" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAGGTTAACTTTACTTTACCATAGTGCAATATATACTTAATTGTCTATATTAAGTTAAGGTGATAACTCGATAAATTTTAGAGAAGGCATTTGAACTTGTGCCTTTTTGCATATCTGGCAGGTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAA</genome_strand>
        <mrna_strand>GAG-GCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG......................................................................................................................GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACCCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTACCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737676" ref_strand="+" ref_description="SGN-E737676 [LC10DC09]">
      <seq>caaacagaaagctattttgttagcagatatggcacacattagtggattggttgcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctaccattggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63307" stop="66549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63607" g_stop="63796" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="295" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="361" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="439" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="662" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66132" g_stop="66249" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="780" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E737676" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63607" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTT</genome_strand>
        <mrna_strand>CAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACCATTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325622" ref_strand="+" ref_description="SGN-E325622 [cTOC-15-L2]">
      <seq>gcagctggagttatcccatcaccatttgactatgctgatgttgtcactaccacaacccacaagtcccttcgtggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgtaatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacnagaacaccgttcctggagaatgttctgccatgggtcctggtggcatcagaatgggaactcctgcactcacttctcggggatttctttgagaaattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63359" stop="66037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63659" g_stop="63796" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="242" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="308" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="385" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="497" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.890" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65644" g_stop="65737" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="590" r_length="93" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E325622" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63659" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGT</genome_strand>
        <mrna_strand>GCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGAC-AAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTG-TAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACNAGAACACCGTTCCTGGAGAATGTTCTGCCATGGGTCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTTGAGAA-ATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292540" ref_strand="+" ref_description="SGN-E292540 [cLET-16-C6]">
      <seq>taccacaacccacaagtcccttcggggccctcgtggtgctatgattttttataggaagggtgttaaagaggttaacaagcaaggcaaggaggttttctacgactatgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63406" stop="66015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63706" g_stop="63796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="196" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="262" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="340" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="452" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65644" g_stop="65715" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="524" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E292540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63706" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTG</genome_strand>
        <mrna_strand>TACCACAACCCACAAGTCCCTTCGGGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366070" ref_strand="+" ref_description="SGN-E366070 [cLPT-15-J17]">
      <seq>ttaacaagcaaggcaaggaggttttctacgactttgaagacaaaattaaccaggcagtctttcctggacttcaaggtggtccccacaatcacaccatcactggcttggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63477" stop="66055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63777" g_stop="63796" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131">
            <donor d_prob="0.765" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63928" g_stop="64032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="125" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="191" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="269" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="381" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="492" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E366070" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63777" e_stop="63796"/>
          <exon e_start="63928" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAAGCAAGGCAAGGAGGTTAGTTAAAGAGCACAGTTCCACTTAAACTGTCACCTCAGCATCACATCTCCTAATATTTAACCAGTTTCATGTGGCCGACTAACTAGTGTCAAAACTAATATCATAATTATTTTATGCTAATTTTGAAGGTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG</genome_strand>
        <mrna_strand>TTAACAAGCAAGGCAAGGAG...................................................................................................................................GTTTTCTACGACTTTGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGCTTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296426" ref_strand="-" ref_description="SGN-E296426 [cLET-19-C8](-)">
      <seq>cctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63670" stop="66579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63970" g_stop="64032" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="129" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="207" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="319" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="430" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66132" g_stop="66279" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="578" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E296426" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296426" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63970" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTA</genome_strand>
        <mrna_strand>CCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296288" ref_strand="+" ref_description="SGN-E296288 [cLET-19-C8]">
      <seq>cctggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63670" stop="66579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63970" g_stop="64032" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="129" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="207" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="319" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="430" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66132" g_stop="66279" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="578" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E296288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63970" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTA</genome_strand>
        <mrna_strand>CCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286054" ref_strand="+" ref_description="SGN-E286054 [cLES-13-M15]">
      <seq>tggacttcaaggtggtccccacaatcacaccatcactggattggcagttgccttgaaacaggccactactccagaatacagagcttaccaagagcaagttctcagcaactccgcgaaatttgcccaggctttagaggagaagggctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="63672" stop="65453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63972" g_stop="64032" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64619" g_stop="64684" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="127" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65130" g_stop="65153" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="151" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E286054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63972" e_stop="64032"/>
          <exon e_start="64619" e_stop="64684"/>
          <exon e_start="65130" e_stop="65153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAGGTTTCATATCTTTACAACTACATTTTTGATAGTTCAGTTAATTGTATAGCTACTGGCTAAGTAAAGGATCTTCTTACTTATTATTTAGGGATGTGAGAGATCTCTGTGTGCTAGCCGAAGAACTAAGCCTTTTGAGATTTAAAAGCTGAAGGCTTTTGACCTTAGTTCAGCAAATGATTTTGTGTAACAAGCAGAATACAGAGCACTTATTGTCCCGGAATTTCACTAACACCCGCAGATAGCACTTCTGATGTCTTACTAAATTGTTCCTTTTTTGCTTAAAGTGTGAAAAACATGATTATACTAAGCAGCTTGTCAAGGAATGCAACTTAAAGATGGAATAGGTCTAAAAACAAAGATAAATGTCATTTATGTACTAATATTCAAAGAGTTTTGAGGTTTTGGAAGAACCGATCTCTCTAACCATGGGAATTTCTTCTTACTCCTTGTTGGCTTCAGTACTTTCTGAAATAGCTTCACTTAACTCGAAAAACATTCCATTATGCTCTTGAGTATTTTTTAGGTAATTATGAAAATTATTGTGATGGTGCTTGTTCTCACTATGCTTCTAATTTACTAAATGCAGGCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAA</genome_strand>
        <mrna_strand>TGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283884" ref_strand="+" ref_description="SGN-E283884 [cLER-13-A20]">
      <seq>gcgaaatttgcccaggctttagaggagaagggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="64370" stop="66621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64670" g_stop="64684" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65130" g_stop="65207" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="93" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="205" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="316" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="494" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E283884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64670" e_stop="64684"/>
          <exon e_start="65130" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATTTGCCCAGGTAAAGTCAATGAAATATGCAGTTCCCAGAAGCATAGTGAAATCCATAGTTTATTTTTGGGAAAATGCACAAGTACCCCACAACCTATGCCTGAAATTCCAGATAAACACTTATGCTAAACTAAAGTCCTACCTTTTACCCCCGAACTTATTTTTATAAATAATTTTCTACCCTTTTTCGACGTGGCACTATCTTTGAAATATAGTCAGCACGCGCTGTGTCCAAAAGATAGTTCCACGTAGGCCGAAAAGGGGTAAAAAGTTATTTATAAAATGAGTTCATGGGGGTAATAAGACTTTAATATAGTATGAGTGTCTCTGAGATTTCGAGCATAGATTGGGGTATTTATTCCATTCATTTTTAAAAGAACTATAAATTATGGTTGACTTATTATCTCCATAATATTGCTTTCTTCATTCCTGCTGCATATTTTTCAATCCTGCAGGCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG</genome_strand>
        <mrna_strand>GCGAAATTTGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343201" ref_strand="+" ref_description="SGN-E343201 [cTOF-17-B12]">
      <seq>agggctatgaacttgtctctggaggaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatcacactgntttgggtccccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="64843" stop="67143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65143" g_stop="65207" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="177" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="466" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66655" g_stop="66839" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="651" r_length="185" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="668"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E343201" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65143" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTT</genome_strand>
        <mrna_strand>AGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCACACTGNTTTGGGTCCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289794" ref_strand="+" ref_description="SGN-E289794 [cLET-9-K14]">
      <seq>gaactgataatcacttggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="64867" stop="66577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65167" g_stop="65207" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="153" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="264" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66132" g_stop="66277" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="410" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E289794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65167" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAAC</genome_strand>
        <mrna_strand>GAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285293" ref_strand="-" ref_description="SGN-E285293 [cLER-20-K5]">
      <seq>tggttttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaagctgtacatattgcagccaacaagaacaccgttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttttcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="64882" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65182" g_stop="65207" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="138" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="249" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="401" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="600" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="627"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E285293" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65182" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>TGGTTTTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTTTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371867" ref_strand="-" ref_description="SGN-E371867 [TUS-30-A2]">
      <seq>ttggtgaacatgaaaaacaagggtattgatggttccagggttgaaaaagtcttggaaactgtacatattgcagccaacaagaacaccgttcctggagatgtttttgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggattttttgaggaagattttgttaaagttgctgatttttttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactaaaatccagtgctccaatcaagtttgaaattgcaaaactccgtcaggatgtggaggagtatggtaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaaaaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttttcatgcttatatattgtaaaaaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="64887" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65187" g_stop="65207" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65452" g_stop="65563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="133" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="244" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="396" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="595" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="626"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E371867" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371867" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65187" e_stop="65207"/>
          <exon e_start="65452" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGAACATGAAAAACAAGGTAAAGTACGAACTCCTAGGAAAAGGGAGAAATCTTCCTCGTGAGTTGTCTGTGAGGACTACTAAGTTTAACAATTGCTTTTGATGAATTAAAATTTGAGCAATACAGTTATTACAGTGAGCTCTTTTGAAGATCAGCTGAGATATTAGTGCATGAGGTTGCTGCATGTTATATATTGGCATCTGTTATGCTCTATCACGAAAGAAATAATACAATGCAAGTACTGAACCTGGTCCTTTTACAGGGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>TTGGTGAACATGAAAAACAAG....................................................................................................................................................................................................................................................GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAACTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTTTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTTTTGAGGAAGATTTTGTTAAAGTTGCTGATTTTTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAAAATCCAGTGCTCCAATCAAGTTTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGGTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAAAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTTTCATGCTTATATATTGTAAAAAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203325" ref_strand="+" ref_description="SGN-E203325 [cLEB-3-J5]">
      <seq>gcacgagtggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65223" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65516" g_stop="65563" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="159" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="337" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="536" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E203325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65516" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>GCACGAGTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278120" ref_strand="+" ref_description="SGN-E278120 [cLER-4-H13]">
      <seq>ttcctggagatgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagctgaaagactttgtatcaatactagaatccagtgctccaatccagcctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcacttcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65219" stop="66539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65519" g_stop="65563" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="156" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66132" g_stop="66239" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="264" r_length="108" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E278120" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65519" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTA</genome_strand>
        <mrna_strand>TTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGCTGAAAGACTTTGTATCAATACTAGAATCCAGTGCTCCAATCCAGCCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCACTTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364839" ref_strand="-" ref_description="SGN-E364839 [cLPT-4-M4]">
      <seq>tgtttctgccatggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtagcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcatgatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcacctaatatccagcttcataaaggtgaaaggggaagaaaatccaaccatgacttgctttcaaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtccttttaaagcaataaacttttgttacctttgttaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65229" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65529" g_stop="65563" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="146" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="298" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66655" g_stop="66848" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="492" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="518"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E364839" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65529" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTC-AAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTT</genome_strand>
        <mrna_strand>TGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTAGCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCATGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCCAGCTTCATAAAGGTGAAAGGGGAAGAAAATCCAACCATGACTTGCTTTCAAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCC-TTTTAAAGCAATAAACTTTTGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296313" ref_strand="+" ref_description="SGN-E296313 [cLET-19-D5]">
      <seq>atggtccctggtggcatcagaatgggaactcctgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65239" stop="67125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65539" g_stop="65563" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65644" g_stop="65754" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="136" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="288" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66655" g_stop="66825" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="459" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E296313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65539" e_stop="65563"/>
          <exon e_start="65644" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTCCCTGGTGGCATCAGAATGGGTAAGACCTCTCTCTTTGATATCTTCTTCATTAGTTATTCTTCCTTGTAAGCAAACTCCGCTAAAACTATTTTTAATCAGGAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAA</genome_strand>
        <mrna_strand>ATGGTCCCTGGTGGCATCAGAATGG................................................................................GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287573" ref_strand="-" ref_description="SGN-E287573 [cLES-9-D16]">
      <seq>tgcactcacttctcggggatttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65351" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65651" g_stop="65754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="282" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="481" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="503"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E287573" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287573" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65651" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>TGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225145" ref_strand="+" ref_description="SGN-E225145 [cLEL-17-D3](-)">
      <seq>atttcttgaggaagattttgttaaagttgctgatttctttgatgctgctgtgaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65369" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65669" g_stop="65754" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="238" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66655" g_stop="66848" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="432" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="454"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E225145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65669" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTT</genome_strand>
        <mrna_strand>ATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216189" ref_strand="+" ref_description="SGN-E216189 [cLEL-13-D2](-)">
      <seq>ttttgttaaagttgctgatttctttgatgctgctgtaaagatagcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65384" stop="67149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65684" g_stop="65754" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="249" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66655" g_stop="66848" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="443" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="464"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E216189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65684" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTT</genome_strand>
        <mrna_strand>TTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTAAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203326" ref_strand="+" ref_description="SGN-E203326 [cLEB-3-J5](-)">
      <seq>gcagtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcaacattagagtccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggggtatgttaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatgtcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65427" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65727" g_stop="65754" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="206" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="405" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="431"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E203326" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65727" e_stop="65754"/>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>GCAGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCAACATTAGAGTCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGGGTATGTTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATGTCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225548" ref_strand="+" ref_description="SGN-E225548 [cLEL-17-D3](-)">
      <seq>agtgaaagtaaaggctgaaactcaagggacaaagttgaaagactttgtatcacccctagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65429" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65729" g_stop="65754" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377">
            <donor d_prob="0.882" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66132" g_stop="66283" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="178" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="377" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="390"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E225548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65729" e_stop="65754"/>
          <exon e_start="66132" e_stop="66283"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAGTAAAGGCTGAAACTCAAGGTGTGTAAGATTTACACGTTTGTGTAGTTAGGTTGACCTATTACAAGATGGAACTCTCCATATTGAAGTATGATACAGTAACCTGGAAAACAAAGTAATAATGTGCAATGATCAATTGAGCTTTACCAATAGTGTAAATATTCTTAACACTGTCAATGCATATGAATTAAATCTCATAAAACAATACCTTGTCTATAGATGTCCGACTTATTAGTTATGCATAAGTATGTGTTGTTCTTTTTATTATCACCCTTTTAGTTCTTTAGTCTAAGGGCTTGGATTTTGTTACCTCAAATGCTTGATCATTTGAATTTGTGTGGTTTTTCAAAACTGCGAACAACTTCCACTGTTACCATAATACCATCTTCTTGTATCAGGGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>AGTGAAAGTAAAGGCTGAAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTTGAAAGACTTTGTATCACCCCTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279190" ref_strand="-" ref_description="SGN-E279190 [cLEL-4-J16](-)">
      <seq>gcacgagctgaaactcaagggacaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggtacatacacaaggaacgtcattgaggcacctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcaagtttgtatattaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65828" stop="67099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66132" g_stop="66309" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="197" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66655" g_stop="66799" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="343" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E279190" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66132" e_stop="66309"/>
          <exon e_start="66655" e_stop="66799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGC-AGTTTGTATATTAATCACT</genome_strand>
        <mrna_strand>GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG.........................................................................................................................................................................................................................................................................................................................................................GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAAGTTTGTATATTAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282814" ref_strand="-" ref_description="SGN-E282814 [cLER-15-G4]">
      <seq>acaaagttgaaagactttgtatcaacactagaatccagtgctccaatcaagtctgaaattgcaaaactccgtcaggatgtggaggagtatgctaagcagttccctacaattgggtttgagaaggaaaccatgaagtacaaaaactaagaggcccctaatatcaagcttcagaaaggtgaaaggggaagaaaatccaaccatgaattgctttcaagtacatgttctcatgcttatatattgtaaagaaatccagcacatgttggttcccatgtatgcagtttgtatattaatcacttacagtccaactgaggtcctttttaaagcaataaacttttgttacctttgctggaaaaaaaaaaaaaaaaaaaaaaaanaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="65834" stop="67154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66134" g_stop="66283" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66655" g_stop="66853" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="349" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="379"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E282814" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66134" e_stop="66283"/>
          <exon e_start="66655" e_stop="66853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAGGTACTTTGTTTCGTCATTAACTGTATCCCTTTGACTATGATGAGCCACAAAGCAATCAAAATTTATGAAAACATTATGGTACTTCAAATCAGATAACCTGTGATGTGAAAGCACAAGGATCATTTTATATGCAATGAGATTGGAATATTATCAGCAAATATTCAGCATAATAATATGGATCTGAAAGAAACTTGGACATGTTTGGTTTGCTTGTGTAGTAGTTCATACTTCAGATCAGATTTACTCCTTTATACCCTATTCAAATGTGGTTATTTTCCTTGCTCTTCATTTTCATTTGAGACTCATTTGTTCTCTTTTCCCGTTTGTGGTTTGTTCGTGTAACAGGCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</genome_strand>
        <mrna_strand>ACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................GCCCCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701055" ref_strand="+" ref_description="SGN-E701055 [FA14DF07]">
      <seq>gaggcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatacgaaggaaattgagggattgcctgccacctctcttggtttgacttcacattgaagctctctttgtgggtgttcgacaactaaattaacattgatttctcttttgtgttctctttgctgcctgtaactgataacaggggcacaaaaatgctactgcagaagtcgggccatggatgattacattttggatttatacagattcacaaataccgacttctgttggctttactatttctgcaaaaacacggtaaaaaactatgaatcctaccacttatgtctcagagcaggagtttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="74985" stop="71802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74688" g_stop="74515" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="313" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="535" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72443" g_stop="72102" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="876" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E701055" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74688" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-TCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACAAATACCGACTTCTGTTGGCTTTACTATTTCTGCAAAAACCACGGTAAAAAACTATGAATCCTACCACTTATGTCTCAGAGCAGGAGTTTATCTT</genome_strand>
        <mrna_strand>GAGGCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACAAATACCGACTTCTGTTGGCTTTACTATTTCTGCAAAAA-CACGGTAAAAAACTATGAATCCTACCACTTATGTCTCAGAGCAGGAGTTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736870" ref_strand="+" ref_description="SGN-E736870 [LC07CE05]">
      <seq>gagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatacgaaggaaattgagggattgcctgccacctctcttggtttgacttcacattgaagctctctttgtgggtgttcgacaactaaattaacattgatttctcttttgtggtctctttgctgcctgtaactgataacaggggcacaaaaatgctactgcagaagtcgggccatggatgattacattttggattatacagattcacaaataccgacttctgttggctttactatttctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75871" stop="71860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75571" g_stop="75492" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="272" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="338" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="632" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72443" g_stop="72160" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="915" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E736870" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75571" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACAAATACCGACTTCTGTTGGCTTTACTATTTCTGCAAA</genome_strand>
        <mrna_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGGTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGA-TTATACAGATTCACAAATACCGACTTCTGTTGGCTTTACTATTTCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323018" ref_strand="+" ref_description="SGN-E323018 [cTOB-30-H12]">
      <seq>agttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatacgaaggaaattgagggattgcctgccacctctcttggtttgacttcacattgaagctctctttgtgggtgttcgacaactaaattaacattgatttctcttttgcgttctctttgctgcctgtaactgataacaggggcacaaaaatgctactgcagaagtcgggccatggatgattacattttggatttatacagattcacgaataccgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="74137" stop="71883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="75" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="147" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="369" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72443" g_stop="72183" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="630" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E323018" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACAAATACCGACTTCT</genome_strand>
        <mrna_strand>TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGCGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACGAATACCGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736734" ref_strand="+" ref_description="SGN-E736734 [LC06DH11]">
      <seq>gagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatacgaaggaaattgagggattgcctgccacctctcttggtttgacttcacattgaagctctctttgtgggtgttcgacaactaaattaacattgatttctcttttgtgttctctttgctgcctgtaactgataacaggggcacaaaaatgctactgcagaagtcgggccatggatgattacattttggatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75871" stop="71907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75571" g_stop="75492" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="272" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="338" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="632" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72443" g_stop="72207" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="869" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E736734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75571" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTAT</genome_strand>
        <mrna_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737896" ref_strand="+" ref_description="SGN-E737896 [LC11CE07]">
      <seq>gagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatacaaaggaaattgagggattgcctgccacctctcctggtttgacttcacattgaaactctctttgtggggggttcgacaactaaaattaacattgatttctccttttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75871" stop="71991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75571" g_stop="75492" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="272" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="338" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="633" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72443" g_stop="72291" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="789" r_length="156" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E737896" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75571" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTAT-AAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGT-GGGTGTTCGACAACT-AAATTAACATTGATTTCT-CTTTTGTGTT</genome_strand>
        <mrna_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACAAAGGAAATTGAGGGATTGCCTGCCACCTCTCCTGGTTTGACTTCACATTGAAACTCTCTTTGTGGGGGGTTCGACAACTAAAATTAACATTGATTTCTCCTTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737757" ref_strand="+" ref_description="SGN-E737757 [LC11AE07]">
      <seq>gatagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagatttagcaaggaaacaagttcatttgaaaaatcagtaacagatcctaaggaaattgaggggattgcctgccacctctcttggtttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75871" stop="72054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75571" g_stop="75492" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="272" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="338" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73515" g_stop="73294" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="632" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72443" g_stop="72354" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="723" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E737757" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75571" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73294"/>
          <exon e_start="72443" e_stop="72354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTCATTGTGGTTTCCCGCATTATTGTTTTAGTTTATATATTTGTAAATGATATGTCCTCAATCACAAATGGCTCACATATCACATATATCCTGTCATTTTTTTTATTTATTTTTTTAGTTTATGGATATTTTTAATACATAATTCTTTTTTTTTTCTTTTTTGAGTCACGGACTAATTTGAGTTTTAAATGTCTTTATGATTCAATTGTTTATCGTAATTATTTATAAGAAATATGAAGATATGTGATTTATCAATGATACATTAAGGTATTGTAATATGGGTAGGAACAGAATTTTTGATAATTTCATAAGTTGGATTCGATGTACGGTCCTAGAATCCGTGCAATGCTTAAGCAAATCGTATGTTTGGTTTTCTCTTATGAATTGGAGGCATTGATAGATTGGAGTCTCCGTCAAATATAATTTCTTTTATTCCGCTATTCAGAAGTTGAGGTTCCAAATCGCTCTTGTGTATTGTCTCTCTGGCTCCAGCAGAGGAAGAGTTTTAACCCCCTGATAAAAAGAAGAAGTGTTTGCTTGGATAGCTGATGATCTCTAACTTAACCTGCCATCTGATATATGTTGTGGCCGTTTTTCCATTGTCTCTGGTTACATTTTGACGGATTTTTGCTTTGTTTTGGGTGGCTGTTTTTATTCATTCGAATAGCTAGATGGTTATTTTGGAACTGAAAGTAAATGACAACTTTCCTGTTCAGTTCTTACAGCTTTTATCCTCATAGACCACTACTGTGCAGCTGAAACTGTATTGAGTTTGACCTTATCTTCATTTTGCAGGATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGA-GGGATTGCCTGCCACCTCTCTTGGTTTGACTT</genome_strand>
        <mrna_strand>GATAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATCCTAAGGAAATTGAGGGGATTGCCTGCCACCTCTCTTGGTTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252238" ref_strand="-" ref_description="SGN-E252238 [cLEG-12-O11]">
      <seq>cagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagtaagtgcaccgttctttttggatgttctcttccaggaaaattttgctatattgtttaaaaaaaaaaaaaaaaaaactcgagactagttctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="74869" stop="72935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74569" g_stop="74515" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="121" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="193" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73515" g_stop="73236" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="473" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="492"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E252238" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74569" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTC</genome_strand>
        <mrna_strand>CAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220330" ref_strand="+" ref_description="SGN-E220330 [cLEL-12-I24](-)">
      <seq>cttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattaaagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagtaagtgccccgttctttttggatgttctcttccaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="73770" stop="72959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73470" g_stop="73259" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="213" polyA_stop="228"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E220330" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73470" e_stop="73259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCA</genome_strand>
        <mrna_strand>CTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAAAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCCCCGTTCTTTTTGGATGTTCTCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221011" ref_strand="+" ref_description="SGN-E221011 [cLEL-22-J19](-)">
      <seq>gatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgccatatatagtaagtgcaccgttcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="74831" stop="72975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74531" g_stop="74515" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="83" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="155" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73515" g_stop="73275" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="396" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="414"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E221011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74531" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTT</genome_strand>
        <mrna_strand>GATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257105" ref_strand="+" ref_description="SGN-E257105 [cLEG-44-J10]">
      <seq>catcatgaaactggagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcgtctccctttatgccattttgagatcatcatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75884" stop="73002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75584" g_stop="75492" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="285" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="351" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73515" g_stop="73302" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="637" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E257105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75584" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGC</genome_strand>
        <mrna_strand>CATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269450" ref_strand="+" ref_description="SGN-E269450 [cLEM-2-G18]">
      <seq>tcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaggctgtaaaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctccactggaggttttcgtgcaatttagaggacgggaaccttctccagaaccgctgcttaggcataatggcctacttacctcttctgcatgaagattgttgtagaaccattagagacaattgcaactgtatttgttttcaagttattataaagaattcactttagaacaaagcattgctactgatttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75015" stop="73036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="202" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="268" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73682" g_stop="73611" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73515" g_stop="73336" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="520" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E269450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73611"/>
          <exon e_start="73515" e_stop="73336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAGGTAGGGGGATTATAACAATGCTAGTGTCTTGTTATGTTTTGCTCATTTTTTAATTCTGCTTAGTCTTCTGATGCATTCATTATCTTCATATTCAGGTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCG</genome_strand>
        <mrna_strand>TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG....................................................................................GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG...............................................................................................GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729004" ref_strand="+" ref_description="SGN-E729004 [LA19CF09]">
      <seq>gctatattgcctgttgcacacatggtttgtaatcagatgccaccagttggggataaacccagcctaatgacattccgtgaggttgagactgtcttccatgaatttggacatgcccttcagcatatgctaactaagcaggatgagggtttggttgctggcataaggggtgtagagtgggatgctgtggaattgccatcacaattcatggagaattggtgctatcacagggatactctgatgggtattgctaagcatcatgaaactggagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgataaggctgtagaagaaacaggccagagattcagggagactgttcttgctcttggcggtggaaaggctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="77301" stop="73317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77001" g_stop="76921" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76920" i_stop="76351" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76350" g_stop="76205" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="227" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76204" i_stop="75610" i_length="595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75609" g_stop="75492" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="345" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="537" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="603" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73682" g_stop="73617" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="669" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E729004" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77001" e_stop="76921"/>
          <exon e_start="76350" e_stop="76205"/>
          <exon e_start="75609" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAGGTAAGCATGTGGTTTGACTCTAAGTGCCTTTGATAAGCTATTGTGCTGCATGGTATATCATCAGCTTTGGCTAATCTACTACTTGTTAGGCTTTGCATCAGAGTGGGTTGTAAAATAATTTTCTTTTGGGTGGATATGGGTGGTGTGGGAGGGACATGAGCAAATGTTTAAGCCGATATTTTTACTAATTTTAGGTTTAGGAATATTTCTAAGGTAATGTAAATGATTATGTCAATGTTGGGTATTACTGTATAAACACAGTATCTTCTATTCCTCCCTTTCCTTGTTATCTGTGGGGAAATATCTGATGGCTGGGCTTTCTATTTTTTTCTTTTATACAAAAACCCTGGGTCACAGCGCTTCTTCTCTCGAATCCTTTTGTTCAAGGTCTCGACAAAATTTTTATGTACTCTTTTCTTCATTAGCTTGTTTCTGAGATATATGATGCTTCCAATCATCTGCGGGGTTGTATCTATAGTTCATGAAAAGTTAACATTTACTTCTACACAAGTAAAATTACCATCACTCCGTCAGGCATGTTTTTGGTATTGAATACGTTATGCTTTTTAGGTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAGGTATGGTGATGTCCTTGTAATATTACTTGATCCGTTTAGTTCTGGTTGAAAAAACAAGTAACTCCACTTATGTTTCTAAAACAAAAAAGGTGGACAAAATGCACTTTGAAATAGCTATTTTCAGAGGCCCCTGCCTGTAGGCGTGCCTAGGTCATTTTCAAGCTTAAGAAAAGAAAGGAACAAATTGATGAACTCTTAAAACATTATCAGAAGGATTCTTCTTAAACCAAACCAAAAAAAAACACCACCATTTAATCAACTCTTGTTTCATATGCTTTTTATGCTGCCTGGTCGCTTCTATGATGTCTCCATGCCAACATTCTCTCTGAATAAGTTACTTTCAATGCAATTAATTTTTATTGTAGTGAGTTTTTATATGTTTGATTTTGTTTAGTTTCTCATAAATTGTATGCTCCACTTCAAAGGAGCCTGTGTTTCACTTTTCGCTTCAAGTCACGCAGACGTTGTCGGTTTTTGCGCTTTTCACTTTCAAAAATACTGCAGTAGAAGAGATATGGTTGAAGAAATCCATGTTTCGTTTCTTTTGAATCAGTTAGCTGTTGATTAGTCATTTTATTGATGAGCTGCTCTGCAGGGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCA</genome_strand>
        <mrna_strand>GCTATATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGATAAG....................................................................................GCTGTAGAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264451" ref_strand="+" ref_description="SGN-E264451 [cLEG-67-B14]">
      <seq>catgaaactggagagacactcccagaagacatatacaagaagcttcttgcttctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaacccaagtgcttcctccactcccagacgataagttccttgccagtttcagtcacatttttgctggtggatatgctgctggatactacagttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggactagagaatgagaaagctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75881" stop="73462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75581" g_stop="75492" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="282" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73767" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="348" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73682" g_stop="73675" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="356" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E264451" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75581" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73767"/>
          <exon e_start="73682" e_stop="73675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAGGTATAGTTTAGAACTTTTGCTTCCATAATCTTTAGTCATATTTTTCACCATTCAACTTATAGTAGTGGCTTTAAATTTGAGTAGGCTGTAAA</genome_strand>
        <mrna_strand>CATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTTCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAA....................................................................................GCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737334" ref_strand="+" ref_description="SGN-E737334 [LC09BE01]">
      <seq>ccctttaggaactcccagaagacatataccagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcacaatatgttccgggtggttcggaatcaatctattgtgttgaccgacgggtctctaagaaaaccccagtgcttcctccactcccagacgataagttccttgctagtttcagtcacatttttgctggtggatatgctgctggatactaccgttacaagtgggcagaggttttgtctgcagatgctttctctgcttttgaagatgttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="75874" stop="73480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75576" g_stop="75492" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74706" g_stop="74515" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="275" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73832" g_stop="73780" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E737334" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75576" e_stop="75492"/>
          <exon e_start="74706" e_stop="74515"/>
          <exon e_start="73832" e_stop="73780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAGGTGCTTCTGCCCCCTTTTTGTGGTTCTTAGCTCCTTATATATTTCTAGTTAGTTGTATTTCCTGTGAGAGAGTTGTGTATAAATATTGTGGGGTTAAAGTGGAGAAGTTATATCTTTTTAGATCCATCGTGCCTCTGAAATTTAGTTTTCTCTTCCTCAATATAAGAATGTACGATTCTTTACTGCTTAATCTTAAAATTCTTCTGGCGTATTGATAGCACGTGCTTATATTGACCAAACTGTTAGGCTAGTACTGGAACTGTTGCTTGTATCCTAAGTTGATTGGACTCTCCAAAAATGTTCGGATCCTCCAAAATTGCACTACTTTTGAAGGATCCACCGCGCACCTGATGGCATTTTTGAAGAGTCCGAGCAACGTAACTTATATCTGCCTTTTGCTCAGCAACATAATATTTTTCTTATATTGACATGGTAATGGTAATAGGTTTTTGACGGATGTTCTATTATGATCTATTCCTGTTAATTACATTCTTTATATAGTATTTCTGTCTTTAAGAAATAACTTATTGGATTTAGATGTTCTACTATTTAGACTGTTGAAATATCTCCTTTCTTTCAAGTGGTTTTTATATCTTCTTCTATATAAAAATAAATAAATTGGGGTAGCCTTGTTCTAGATCAAGACATGCTTTAACCAACAAAGTATTTCCAATTTGTGCAGTGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACT</genome_strand>
        <mrna_strand>CCCTTTAG-GA-ACTCCCAGAAGACATATACCAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCACAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCCAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCTAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACCGTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330575" ref_strand="+" ref_description="SGN-E330575 [cTOD-8-K8]">
      <seq>ttgagccagctgatggattagctccagtttggaacaatgatgtccggttttaccgtgtgaatgattcctctggaagtcctattgcctacttctattttgatccatactctcgtccatctgagaaacgtggcggtgcttggatggatgaagttgttagccgaagccgtgtattatcacgagatggttcgaatgctagattgcctgttgcacacatggtttgtaatcagatgccaccagttggggataaacccagcctaatgacattccgtgaggttgagactgtcttccatgaatttggacatgcccttcagcatatgctaactaagcaggatgagggtttggttgctggcataaggggtgtagagtgggatgctgtggaattgccatcacaattcatggagaattggtgctatcacagggatactctgatgggtattgctaagcatcatgaaactggagagacactcccagaagacatatacaagaagcttcttgctgctaaaactttccgtgctggtaccttaagtcttcggcagttgagatttgctacagttgatcttgagttacatgcaaaatatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="77493" stop="74361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77290" g_stop="77265" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77264" i_stop="77167" i_length="98">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77166" g_stop="76921" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="272" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76920" i_stop="76351" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76350" g_stop="76205" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="418" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76204" i_stop="75610" i_length="595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75609" g_stop="75492" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="536" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74706" g_stop="74661" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="582" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E330575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77290" e_stop="77265"/>
          <exon e_start="77166" e_stop="76921"/>
          <exon e_start="76350" e_stop="76205"/>
          <exon e_start="75609" e_stop="75492"/>
          <exon e_start="74706" e_stop="74661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCAGCTGATGGATTAGCTCCAGTAAGACTTTGTTCACTTGCCTTTCCTTTTATCTTTGTTCCTCCTGATCCTGTATGCAGAGGCAGATAATGTTGTGCACCGATGTGTGTGATTTCTAGGTTTGGAACAATGATGTCCGGTTTTACCGTGTGAATGATTCCTCTGGAAGTCCTATTGCCTACTTCTATTTTGATCCATACTCTCGTCCATCTGAGAAACGTGGCGGTGCTTGGATGGATGAAGTTGTTAGCCGAAGCCGTGTATTATCACGAGATGGTTCGAATGCTAGATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAGGTAAGCATGTGGTTTGACTCTAAGTGCCTTTGATAAGCTATTGTGCTGCATGGTATATCATCAGCTTTGGCTAATCTACTACTTGTTAGGCTTTGCATCAGAGTGGGTTGTAAAATAATTTTCTTTTGGGTGGATATGGGTGGTGTGGGAGGGACATGAGCAAATGTTTAAGCCGATATTTTTACTAATTTTAGGTTTAGGAATATTTCTAAGGTAATGTAAATGATTATGTCAATGTTGGGTATTACTGTATAAACACAGTATCTTCTATTCCTCCCTTTCCTTGTTATCTGTGGGGAAATATCTGATGGCTGGGCTTTCTATTTTTTTCTTTTATACAAAAACCCTGGGTCACAGCGCTTCTTCTCTCGAATCCTTTTGTTCAAGGTCTCGACAAAATTTTTATGTACTCTTTTCTTCATTAGCTTGTTTCTGAGATATATGATGCTTCCAATCATCTGCGGGGTTGTATCTATAGTTCATGAAAAGTTAACATTTACTTCTACACAAGTAAAATTACCATCACTCCGTCAGGCATGTTTTTGGTATTGAATACGTTATGCTTTTTAGGTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAGGTATGGTGATGTCCTTGTAATATTACTTGATCCGTTTAGTTCTGGTTGAAAAAACAAGTAACTCCACTTATGTTTCTAAAACAAAAAAGGTGGACAAAATGCACTTTGAAATAGCTATTTTCAGAGGCCCCTGCCTGTAGGCGTGCCTAGGTCATTTTCAAGCTTAAGAAAAGAAAGGAACAAATTGATGAACTCTTAAAACATTATCAGAAGGATTCTTCTTAAACCAAACCAAAAAAAAACACCACCATTTAATCAACTCTTGTTTCATATGCTTTTTATGCTGCCTGGTCGCTTCTATGATGTCTCCATGCCAACATTCTCTCTGAATAAGTTACTTTCAATGCAATTAATTTTTATTGTAGTGAGTTTTTATATGTTTGATTTTGTTTAGTTTCTCATAAATTGTATGCTCCACTTCAAAGGAGCCTGTGTTTCACTTTTCGCTTCAAGTCACGCAGACGTTGTCGGTTTTTGCGCTTTTCACTTTCAAAAATACTGCAGTAGAAGAGATATGGTTGAAGAAATCCATGTTTCGTTTCTTTTGAATCAGTTAGCTGTTGATTAGTCATTTTATTGATGAGCTGCTCTGCAGGGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAGGTGAGAACTTCCCCATTTTTCTCTTTTCTGGTCCTCTCTTAATAACCGTTTGACTGATTTTCCTTTCAACCAGTATTCTATTAGCCAACAATATATATTCCAAAATTTTCATGCCCTATTTCTTTATATAAAATAATTCATGTCTATGATCGAAGTCCGTAATTTTCCTTCAAACTCTTGGTGGGAGACATCAAGTCTCTTCATAACATTCAGGTTTGAGACCTTCATGGGCCACCAAAAAAAAAGTCTCTCCATAACATGCATTTAACATATACTATTTTCCTGGTTCATTTCTAATATTCTTTTAATGTAACTGAAGTTGATATACACGTGTTTCCCTTTCTTTATTGACTTTTAAATTGGAAGGGGGAGAGAAATAAGTTTTGAATGCACACTTTCTAAATCAGGTCTTCAGGAATAGCGACATTTTGCTGGATGTAGGGTTTTCAAGTCTAGTTAGTTAATCAAGTGGTGTCAATATTAAGTGCTCCACAAGTATGTAAAACGGTAGTAGGAACTAAAGGGATGTTCTCTGTTGTTTCGATTCATGCACCAGTGCCTGCATCTACCTGAATTGTCTTTGTTGGTTAGTTTCCTTAGCGTTCTTTGATTATGTTTCTAGAACTCTAAATTGTTCCCAGTGAGTGATGTATTCTGTAGATCTTTTCTTCTCTTTATTATGGTGTAGGTATTTTATTTAAAATTGTCATCATAAATGATGTTCGATGTCATGACTTCGTGATTCTGTTGAAATGCTTACCAGTGGCCATAAACTTTCTTTGTAGTTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTC</genome_strand>
        <mrna_strand>TTGAGCCAGCTGATGGATTAGCTCCA..................................................................................................GTTTGGAACAATGATGTCCGGTTTTACCGTGTGAATGATTCCTCTGGAAGTCCTATTGCCTACTTCTATTTTGATCCATACTCTCGTCCATCTGAGAAACGTGGCGGTGCTTGGATGGATGAAGTTGTTAGCCGAAGCCGTGTATTATCACGAGATGGTTCGAATGCTAGATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378285" ref_strand="+" ref_description="SGN-E378285 [TUS-31-A2]">
      <seq>attcactgggtgtcgttttacatgagaaaacctatgacctgcatgactatcttttcaatttgatgaaaatgatttagattccaccaagaagtttgaaaaattaataatagataagaaggatattgacggattacctgccacatctcttggtttggctgcacagacagcagtgtctaaggggcacgaaaatgctactgcanaagacgggccatggatcatcacattggatgcgccaagttatatgtctgtgattcaacatgcaaagaatagaactcttagagaagaggtgtaccgtgcttgtataaatcgtgcttctagtggagaccttgataacactgagataattaaccaaattctaaagcttagattggaaaaggctaagctccttggatacaataactatgctgaggtaagcatggcgatgaaaatggccactgttgaaaaagccgaagagcttttagaaaagcttcgtagtgcttcttgggatcctgcagttaaagatttggaagacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="79439" stop="78203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79161" g_stop="79018" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="178" r_length="143" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78918" g_stop="78688" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="409" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78687" i_stop="78600" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78599" g_stop="78509" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="500" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E378285" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79161" e_stop="79018"/>
          <exon e_start="78918" e_stop="78688"/>
          <exon e_start="78599" e_stop="78509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAGGTAACGCGGAAGCTCGCTTTGTGGATGTTTGAAAACTGAATTGATTTTGGTGACCTTGTCTCTTATGGATTCTCCTTTGTTGCCTGTGTCAAAAAACAGGGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAGGTATACATTTTTTAAAAAACTCACAATACCATCTATGTTGGTTAAATGTATTTTTTCTTTTTGAAAATTAAATGGTTTACTGATATAGGTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCAGTTAAAG</genome_strand>
        <mrna_strand>GACCT-GCATGACTATCTTTTCAATTTGATGAAAATGATTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAG...................................................................................................GGGCACGAAAATGCTACTGCANAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAG........................................................................................GTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCAGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289327" ref_strand="+" ref_description="SGN-E289327 [cLES-18-D20]">
      <seq>tatctcagaaatttgatgaaaatgttttagattccaccaagaagtttgaaaaattaataatagataagaaggatattgacggattacctgccacatctcttggtttggctgcacagacagcagtgtctaaggggcacgaaaatgctactgcagaagacgggccatggatcatcacattggatgcgccaagttatatgtctgtgattcaacatgcaaagaatagaactcttagagaagaggtgtaccgtgcttgtataaatcgtgcttctagtggagaccttgataacactgagataattaaccaaattctaaagcttagattggaaaaggctaagctccttggatacaataactatgctgaggtaagcatggcgatgaaaatggccactgttgaaaaagccgaagagcttttagaaaagcttcgtagtgcttcttgggatcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="79448" stop="78216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79148" g_stop="79018" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78918" g_stop="78688" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="362" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78687" i_stop="78600" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78599" g_stop="78516" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="446" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E289327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79148" e_stop="79018"/>
          <exon e_start="78918" e_stop="78688"/>
          <exon e_start="78599" e_stop="78516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAGGTAACGCGGAAGCTCGCTTTGTGGATGTTTGAAAACTGAATTGATTTTGGTGACCTTGTCTCTTATGGATTCTCCTTTGTTGCCTGTGTCAAAAAACAGGGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAGGTATACATTTTTTAAAAAACTCACAATACCATCTATGTTGGTTAAATGTATTTTTTCTTTTTGAAAATTAAATGGTTTACTGATATAGGTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCA</genome_strand>
        <mrna_strand>TATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAG...................................................................................................GGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAG........................................................................................GTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285990" ref_strand="+" ref_description="SGN-E285990 [cLES-13-D4]">
      <seq>ttgaatcgcatattaaggaggctggacttagtggtatcgctcttgaggatgatcaaagagagcaatttaacaagattgaacaggatttagcaaagctatctcagaaatttgatgaaaatgttttagattccaccaagaagtttgaaaaattaataatagataagaaggatattgacggattacctgccacatctattggtttggctgcacagacagcagtgtctaaggggcacgaaaatgctactgcagaagacgggccatggatcatcacattggatgcgccaagttatatgtctgtgattcaacatgcaaagaatagaactcttagagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="80003" stop="78512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79704" g_stop="79622" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79621" i_stop="79162" i_length="460">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79161" g_stop="79018" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="227" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99">
            <donor d_prob="0.591" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78918" g_stop="78812" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="334" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E285990" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79704" e_stop="79622"/>
          <exon e_start="79161" e_stop="79018"/>
          <exon e_start="78918" e_stop="78812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGCGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAGGTGTGCTCTGGTTTCTTGTTGAACACATAGTCTTCTCATTGTTCTATACCCCCCAAATGTTTCTTCTTAAATGCACTCTTAACAAGTGAAAAATTTAACGGACTGGTATTATAGCAATATATCTATAATACCAGTTATTTTATATGTATGTTTGAAGTTATTTTACTTGTACACCTATCTGATTTATGTTGTGGCTGTTTTTCCATTTTCTCTGAAAATATTTTGACGGATTTTTACTTTGTTTTGGGTGGTTGGTGTCTTTTTATGAGTGTTTTTTTATTCGAATTGCGAGATGATTATGTTGGAACTAAAAGTAACTGAGAATATTCCTGTTCAATATTTATGGATTTTAACCTCAGAGTAATATTTTAACTTATTGCAAACAGTCAGACAATTACTGCACGGTTGAAATTGTATTTTAAGTCACTATGTTGCATTTGACCTTATCTTCATTTTGCAGGATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAGGTAACGCGGAAGCTCGCTTTGTGGATGTTTGAAAACTGAATTGATTTTGGTGACCTTGTCTCTTATGGATTCTCCTTTGTTGCCTGTGTCAAAAAACAGGGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGA</genome_strand>
        <mrna_strand>TTGAATCGCATATTAAGGAGGCTGGACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTATTGGTTTGGCTGCACAGACAGCAGTGTCTAAG...................................................................................................GGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736019" ref_strand="+" ref_description="SGN-E736019 [LC04AB09]">
      <seq>gttcagctcgcctttgcttaagacccacttctactttttcacgtttatctaccaaaaacctacttcagtgtccgtcttgtcccctctggtcatcctctttctctctctgtcttcacactttccgcaagtcaacttctcccggtaaatccatcaccgtccgatcattttctccatcgtcggcatccatttccgaccatccttctaaaatgtcgatggcttctgatgacaatcctttgttgaaggactttgatttcccaccattcgatgtaatcgaagccaagcacgtccgtcctggaattcgtgccttgcttaacaaaatagaggaggaattgagcgctttggagaagagtgtggagcctacctggcccaagctggcggagccattggagaagatcattgatagattgacggttgtttggggtgcggtgaatcatctcaagtccgtcaaagataatcctgaacttcgttccgctcttgaagaagttcagccagaaaaagttgcttttcagcttaaattgggtcagagtaagccaatctataatgcattcaaagccatccgagagtcacctgagtgggactctttgagtgatgctcgtaaacgaatagttgaatcgcaaataaaggaggctgtacttagtggtatcgctcttgaggatgatcaaagagagcaatttaacaagattgaacaggatttagcaaagctatctcagaaatttgatgaaaatgttttagattccaccaagaagtttgaaaaattaataatagataagaaggatattgacggattacctgccacatctcttggtttggctgcacagacagcagtgtctaaggggcacgaaaatgctactgcagaaaacgggccatggatcatcacattggatgcgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="81701" stop="78562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81401" g_stop="81082" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81081" i_stop="81011" i_length="71">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81010" g_stop="80843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="488" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80842" i_stop="80290" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80289" g_stop="80166" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="612" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80165" i_stop="79699" i_length="467">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79698" g_stop="79622" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="689" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79621" i_stop="79162" i_length="460">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79161" g_stop="79018" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="833" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78918" g_stop="78862" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="890" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E736019" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81401" e_stop="81082"/>
          <exon e_start="81010" e_stop="80843"/>
          <exon e_start="80289" e_stop="80166"/>
          <exon e_start="79698" e_stop="79622"/>
          <exon e_start="79161" e_stop="79018"/>
          <exon e_start="78918" e_stop="78862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCTCGCCTTTGCTTAAGACCCACTTCTACTTTTTCACGTTTATCTACCAAAAACCTACTTCAGTGTCCGTCTTGTCCCCTCTGGTCATCCTCTTTCTCTCTCTGTCTTCACACTTTCCGCAAGTCAACTTCTCCCGGTAAATCCATCACCGTCCGATCATTTTCTCCATCGTCGGCATCCATTTCCGACCATCCTTCTAAAATGTCGATGGCTTCTGATGACAATCCTTTGTTGAAGGACTTTGATTTCCCACCATTCGATGTAATCGAAGCCAAGCACGTCCGTCCTGGAATTCGTGCCTTGCTTAACAAAATAGTATGTTTCGATTTCTCTTATATACTTAGGGTTTAATAGTGTGGCGCGTTAATTTTGTGATTTGAACGTAGGAGGAGGAATTGAGCGCTTTGGAGAAGAGTGTGGAGCCTACCTGGCCCAAGCTGGCGGAGCCATTGGAGAAGATCATTGATAGATTGACGGTTGTTTGGGGTGCGGTGAATCATCTCAAGTCCGTCAAAGATAATCCTGAACTTCGTTCCGCTCTTGAAGAAGTTCAGGTTTGTAATCTTGGGGCTTTTGGCATCACAATTATAATTTTCTACTAAAATAATATCATCTTGAACCCTTTTTTGAAGATTCTTTGCTTGAAGCCATACCAATTTATTTTTTCCGTGTCTGTGATTTCTTAATCTCCCAGAGTGTAAAGATCTCGTCTCTTTCGTTCAATCAATACAACGTGGTTCTTTTCCTTTCCCATGTTCTTGATTTTCTCCCGACAATTTGTTTTGAGTTCTTTTTTACATTGACTCATGGCCACAACAATTACGAGGGAGTAATTTAGTAGTCTCCTCTCTATAGATTCAAATTTTAATTTGTATTATAGCTTTTGCGTTGTTAAAAAGGATATTAATCAGAGTTGTTTGCTGGATAGATAATGATATCTTCTGTTTGACTACAAACCTTTTTCAATCTGATATACATCCTTTTATACACTTTCTAATTTGAGGCTTGATATGTGTCTTACTACAAGATTCCCATGCTCTTTTCTCTTTATCCTCGGATACGCTACTACTTTCATTGCATCATTGATACTATTTACTTCTCGTGCAGCCAGAAAAAGTTGCTTTTCAGCTTAAATTGGGTCAGAGTAAGCCAATCTATAATGCATTCAAAGCCATCCGAGAGTCACCTGAGTGGGACTCTTTGAGTGATGCTCGTAAACGAATAGTTGAATGTAAGTTCATGAAACTTATTTTTCCTTTTATCTTTTCGAATTCGGGAGGCACGGTGTCTTTAAGCATGAAAATCTATTTAATTCCTGTTGCGGTCTGTCCAGGACTGTAGTTTGAGATTTACTTTTCCTAATGCATCAACTTCTCTCTGCCAATTTGTTTTTGGTATTTTTTTTTGTGCAGAATCGTTATCGTTTATCCAATAAAGCTAAGAACTGTATATTATAAAATTGTATGTACAGTAATTTCTTTGCAACTTGCATGAAGTGCTTGATGGTCACATGATTCCGTTAAAAATTCAACTGTTGTTTCCCAACCCACCCTCACGATAAAAATAGAAACAGAAAGAAAGAACAAGAGAAATCAAAGAAGACCACATATTTTTAATGGTTAACTTTCATTTGAGGTCTTTCCAGCGCATTGCCTGCAAATAAATGGTCATCTCACACTCTGCTTCTTGCTCGTGCAGCGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAGGTGTGCTCTGGTTTCTTGTTGAACACATAGTCTTCTCATTGTTCTATACCCCCCAAATGTTTCTTCTTAAATGCACTCTTAACAAGTGAAAAATTTAACGGACTGGTATTATAGCAATATATCTATAATACCAGTTATTTTATATGTATGTTTGAAGTTATTTTACTTGTACACCTATCTGATTTATGTTGTGGCTGTTTTTCCATTTTCTCTGAAAATATTTTGACGGATTTTTACTTTGTTTTGGGTGGTTGGTGTCTTTTTATGAGTGTTTTTTTATTCGAATTGCGAGATGATTATGTTGGAACTAAAAGTAACTGAGAATATTCCTGTTCAATATTTATGGATTTTAACCTCAGAGTAATATTTTAACTTATTGCAAACAGTCAGACAATTACTGCACGGTTGAAATTGTATTTTAAGTCACTATGTTGCATTTGACCTTATCTTCATTTTGCAGGATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAGGTAACGCGGAAGCTCGCTTTGTGGATGTTTGAAAACTGAATTGATTTTGGTGACCTTGTCTCTTATGGATTCTCCTTTGTTGCCTGTGTCAAAAAACAGGGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCA</genome_strand>
        <mrna_strand>GTTCAGCTCGCCTTTGCTTAAGACCCACTTCTACTTTTTCACGTTTATCTACCAAAAACCTACTTCAGTGTCCGTCTTGTCCCCTCTGGTCATCCTCTTTCTCTCTCTGTCTTCACACTTTCCGCAAGTCAACTTCTCCCGGTAAATCCATCACCGTCCGATCATTTTCTCCATCGTCGGCATCCATTTCCGACCATCCTTCTAAAATGTCGATGGCTTCTGATGACAATCCTTTGTTGAAGGACTTTGATTTCCCACCATTCGATGTAATCGAAGCCAAGCACGTCCGTCCTGGAATTCGTGCCTTGCTTAACAAAATA.......................................................................GAGGAGGAATTGAGCGCTTTGGAGAAGAGTGTGGAGCCTACCTGGCCCAAGCTGGCGGAGCCATTGGAGAAGATCATTGATAGATTGACGGTTGTTTGGGGTGCGGTGAATCATCTCAAGTCCGTCAAAGATAATCCTGAACTTCGTTCCGCTCTTGAAGAAGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAAAAGTTGCTTTTCAGCTTAAATTGGGTCAGAGTAAGCCAATCTATAATGCATTCAAAGCCATCCGAGAGTCACCTGAGTGGGACTCTTTGAGTGATGCTCGTAAACGAATAGTTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAG...................................................................................................GGGCACGAAAATGCTACTGCAGAAAACGGGCCATGGATCATCACATTGGATGCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339067" ref_strand="+" ref_description="SGN-E339067 [cTOF-6-A21]">
      <seq>tcgcctttgcttaagacccacttctactttttcacgtttatctaccaaaaacctacttcagtgtccgtcttgtcccctctggtcatcctctttctctctctgtcttcacactttccgcaagtcaacttctcccggtaaatccatcaccgtccgatcattttctccatcgtcggcatccatttccgaccatccttctaaaatgtcgatggcttctgatgacaatcctttgttgaaggactttgatttcccaccattcgatgtaatcgaagccaagcacgtccgtcctggaattcgtgccttgcttaacaaaatagaggaggaattgagcgctttggagaagagtgtggagcctacctggcccaagctggcggagccattggagaagatcattgatagattgacggttgtttggggtgcggtgaatcatctcaagtccgtcaaagataatcctgaacttcgttccgctcttgaagaagttcagccagaaaaagttgcttttcagcttaaattgggtcagagtaagccaatctataatgcattcaaagccatccgagagtcacctgagtgggactctttgagtgatgctcgtaaacgaatagttgaatcgcaaataaaggaggctgtacttagtggtatcgctcttgaggatgatcaaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="81694" stop="79343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81394" g_stop="81082" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81081" i_stop="81011" i_length="71">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81010" g_stop="80843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="481" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80842" i_stop="80290" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80289" g_stop="80166" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="605" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80165" i_stop="79699" i_length="467">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79698" g_stop="79643" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="661" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E339067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81394" e_stop="81082"/>
          <exon e_start="81010" e_stop="80843"/>
          <exon e_start="80289" e_stop="80166"/>
          <exon e_start="79698" e_stop="79643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTTTGCTTAAGACCCACTTCTACTTTTTCACGTTTATCTACCAAAAACCTACTTCAGTGTCCGTCTTGTCCCCTCTGGTCATCCTCTTTCTCTCTCTGTCTTCACACTTTCCGCAAGTCAACTTCTCCCGGTAAATCCATCACCGTCCGATCATTTTCTCCATCGTCGGCATCCATTTCCGACCATCCTTCTAAAATGTCGATGGCTTCTGATGACAATCCTTTGTTGAAGGACTTTGATTTCCCACCATTCGATGTAATCGAAGCCAAGCACGTCCGTCCTGGAATTCGTGCCTTGCTTAACAAAATAGTATGTTTCGATTTCTCTTATATACTTAGGGTTTAATAGTGTGGCGCGTTAATTTTGTGATTTGAACGTAGGAGGAGGAATTGAGCGCTTTGGAGAAGAGTGTGGAGCCTACCTGGCCCAAGCTGGCGGAGCCATTGGAGAAGATCATTGATAGATTGACGGTTGTTTGGGGTGCGGTGAATCATCTCAAGTCCGTCAAAGATAATCCTGAACTTCGTTCCGCTCTTGAAGAAGTTCAGGTTTGTAATCTTGGGGCTTTTGGCATCACAATTATAATTTTCTACTAAAATAATATCATCTTGAACCCTTTTTTGAAGATTCTTTGCTTGAAGCCATACCAATTTATTTTTTCCGTGTCTGTGATTTCTTAATCTCCCAGAGTGTAAAGATCTCGTCTCTTTCGTTCAATCAATACAACGTGGTTCTTTTCCTTTCCCATGTTCTTGATTTTCTCCCGACAATTTGTTTTGAGTTCTTTTTTACATTGACTCATGGCCACAACAATTACGAGGGAGTAATTTAGTAGTCTCCTCTCTATAGATTCAAATTTTAATTTGTATTATAGCTTTTGCGTTGTTAAAAAGGATATTAATCAGAGTTGTTTGCTGGATAGATAATGATATCTTCTGTTTGACTACAAACCTTTTTCAATCTGATATACATCCTTTTATACACTTTCTAATTTGAGGCTTGATATGTGTCTTACTACAAGATTCCCATGCTCTTTTCTCTTTATCCTCGGATACGCTACTACTTTCATTGCATCATTGATACTATTTACTTCTCGTGCAGCCAGAAAAAGTTGCTTTTCAGCTTAAATTGGGTCAGAGTAAGCCAATCTATAATGCATTCAAAGCCATCCGAGAGTCACCTGAGTGGGACTCTTTGAGTGATGCTCGTAAACGAATAGTTGAATGTAAGTTCATGAAACTTATTTTTCCTTTTATCTTTTCGAATTCGGGAGGCACGGTGTCTTTAAGCATGAAAATCTATTTAATTCCTGTTGCGGTCTGTCCAGGACTGTAGTTTGAGATTTACTTTTCCTAATGCATCAACTTCTCTCTGCCAATTTGTTTTTGGTATTTTTTTTTGTGCAGAATCGTTATCGTTTATCCAATAAAGCTAAGAACTGTATATTATAAAATTGTATGTACAGTAATTTCTTTGCAACTTGCATGAAGTGCTTGATGGTCACATGATTCCGTTAAAAATTCAACTGTTGTTTCCCAACCCACCCTCACGATAAAAATAGAAACAGAAAGAAAGAACAAGAGAAATCAAAGAAGACCACATATTTTTAATGGTTAACTTTCATTTGAGGTCTTTCCAGCGCATTGCCTGCAAATAAATGGTCATCTCACACTCTGCTTCTTGCTCGTGCAGCGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAG</genome_strand>
        <mrna_strand>TCGCCTTTGCTTAAGACCCACTTCTACTTTTTCACGTTTATCTACCAAAAACCTACTTCAGTGTCCGTCTTGTCCCCTCTGGTCATCCTCTTTCTCTCTCTGTCTTCACACTTTCCGCAAGTCAACTTCTCCCGGTAAATCCATCACCGTCCGATCATTTTCTCCATCGTCGGCATCCATTTCCGACCATCCTTCTAAAATGTCGATGGCTTCTGATGACAATCCTTTGTTGAAGGACTTTGATTTCCCACCATTCGATGTAATCGAAGCCAAGCACGTCCGTCCTGGAATTCGTGCCTTGCTTAACAAAATA.......................................................................GAGGAGGAATTGAGCGCTTTGGAGAAGAGTGTGGAGCCTACCTGGCCCAAGCTGGCGGAGCCATTGGAGAAGATCATTGATAGATTGACGGTTGTTTGGGGTGCGGTGAATCATCTCAAGTCCGTCAAAGATAATCCTGAACTTCGTTCCGCTCTTGAAGAAGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAAAAGTTGCTTTTCAGCTTAAATTGGGTCAGAGTAAGCCAATCTATAATGCATTCAAAGCCATCCGAGAGTCACCTGAGTGGGACTCTTTGAGTGATGCTCGTAAACGAATAGTTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746665" ref_strand="+" ref_description="SGN-E746665 [GI|62946490]">
      <seq>tttagtttagtttttacctagtaatgcttcaaaaattgaaaccattggaagtcataagtcccagtttgctggtatctgcaaaacctatcttgttccctcctacctattttcgctttttaatcagtttttcattttaaaattacagaaaatcatgagttggaaattggattttgtagataaccaaagtttaatgagataggcatagtcaggttttgagttgggatgacctgatagggcaattttcttccatgagaataggctgatggaagtagataattgctggaacataaggttggtcaactgtgttatcatctgcctggtgatatatatacaatctgcctttgcacaagaaggatttctaagtattcagtgctgtgctactgcaaactttacggaaccacgtaccaacttaagttggatttcagatggaatttggttccctgaaaatcagagttgcatatcaaggccagtgtacaagagtgaacactatgaacgagctcgatcttttagctcagacattagtcataagtggtgttacagcttgccaaccaggaaagagcatgactatctagtaagaggtacatttctttctgtcaaacaagagaagactctcccacatagttcttttgttgttttgattggtgtcacaccaatagccacagtgaagtcatctgatgaacttaaggttgagggaatttttagagctactagaagctatacaaacttctgcctattgaaaaagaaggggaatccttacatttctaaggttgaactcagaccgataaattcagattatctcaaaaaggagccttcagaaatactcaaacttgtacatagagtagatgctggaaataaggctgcggaaatcaggtacccatatgaccagtacgatagaatttggagaccagcctcaaatctagaatcacaagttactcaaacgccgccatccattattaagcatgtctttgcaagaaaacatagtttattacctcctgcattcgtattacgaacagccctcacccatccagagagattggacttcttgcatgaagaccttgacacaggatattatacttactctctcttcctgtactttctagagcccaatgactcagttcaagctggagaaagggtgttctatatatacattaacaacgaaaagagacttaaggttgatatactggctagtggttccagatacctggatgtagttctgaatttcagagcaaataggtctgtcaacctgacaatgatcaaggcctcaaatctatctcaattgggacccatttgtaatggttatgagattttaaaggctcttcctcgtgttaaagaaacagccactgaagaagttgacataatggcgaatgtcaagaaggaattattgcaacaaaacaaaaacaatgaaatatggaagagttggtcaggagacccttgtcttccccttccctggccgggcctaacttgtgatcgagttaatggtacttcagtcatcactcagatagatctctcctcaggtggccttagtggacctagccctcctagcatccaaaaactgatgcacctgagaaaactgaatatcagcattaatggctctagtggcacaaattcactctttacatcatacttcacatactctacaagatacttaagcagcaggattcatattagcaacaagctttctagaagcataaaagaatctaatattacaacagacaaagggatggctaatgttaaacaaaactcaagttcaacacataaacttgtgattggagcagctgtaggtacagccctcctggtgatccttgcaattgttatctctgtggtctgcctcttcaaaagacgagtaatggcaggaccaaaatttcttatgagaaattactcgatcacaaggaatgcagtatactcagtaccaagcatggatactaccatgatgaagtcaatatcctccaggaacttcaaattggaatatatagaagctattactcagaactacaaaactttgataggtgaaggtggctttggatccgtttaccgtggtaccttacctgatggtgtagaagtggctgtaaaggtcaggtcagccacttcgactcagggaattcgagaattcaataacgagcttaaccttctgtcagctatcacacatgagaacctggtccctcttattggctactgctgcgagaatgaacagcagattctggtttatccatttatgtcaaacagctccctacaggataggttatatggaggagcagcaaaaaggaagattctagactggccggccagactttccattgcgttaggagcagcgagaggtttgctgtaccttcacacattctcggagcgttgtctgatccatagggacgtcaagtcaagcaacatactcttggatcagagcatgtgtgccaaggttgctgattttggattttcaaaatatgcatctcaagaaggggatagtggtacttctttagaagtaagggggacagctgggtacttggatccagagtactactcgacccaacgtctgtcagcaaaaagtgatgtcttcagctttggagttgtcctactggaaatcctcacaggtcgagagcctctcaatattaacaagccaagaaatgagtggagcttggttgaatgggcgaaacctctaataagaagctcaagagttgaagaaattgtggatcccactatcaagggagggtatcatggtgaggcgctgtggagagtggtagaggtggctttggcatgcacagagacatactcgacttacagaccatgcatggcggacattgtaagagagctcgaggatgcattgataatagaaaataatgcatcagaatacttgaagtccctagacagctttggaggatcaaaccgtttctccgtagaaaggtccattgtccttccacctattaaatctcaaacagaaccatccagtctcctctcaaaaccagcccctccacaaccaaggtaaatgctgtagaggaatggatttaaactgattgcaatagataacagaattcttagaaaagtgtttggaatttttgcaaattactcctcaaattccttttaagttaaatctcgttaaactgttcattcagtagagcagattttgttatacataccagagaacaggaaacagtgttgtcaaaggtgtgcttaagccccaaagtgaggcatactttccttgcgattgagatcttgaagactgatatttcactttatcgtaaaaaaaattcaatttctttgtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="-" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="94197" stop="87456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93897" g_stop="93545" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93544" i_stop="93052" i_length="493">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93051" g_stop="92535" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="870" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92534" i_stop="92411" i_length="124">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92410" g_stop="91932" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1349" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91931" i_stop="91831" i_length="101">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91830" g_stop="91680" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1350" r_stop="1500" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91679" i_stop="91520" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.282" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91519" g_stop="91448" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1501" r_stop="1572" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91447" i_stop="91346" i_length="102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.235" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91345" g_stop="91277" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1573" r_stop="1641" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91276" i_stop="91079" i_length="198">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91078" g_stop="91007" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1642" r_stop="1713" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91006" i_stop="90846" i_length="161">
            <donor d_prob="0.151" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90845" g_stop="90667" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1714" r_stop="1892" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90666" i_stop="90374" i_length="293">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90373" g_stop="90147" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1893" r_stop="2119" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="90146" i_stop="89790" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="89789" g_stop="89663" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="2120" r_stop="2246" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89662" i_stop="89577" i_length="86">
            <donor d_prob="0.406" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="89576" g_stop="89508" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2247" r_stop="2315" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="89507" i_stop="89267" i_length="241">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="89266" g_stop="89077" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="2316" r_stop="2505" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="89076" i_stop="88820" i_length="257">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="88819" g_stop="88687" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="2506" r_stop="2638" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="88686" i_stop="88375" i_length="312">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="88374" g_stop="87757" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="2639" r_stop="3256" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3257" polyA_stop="3272"/>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="-" ref_id="SGN-E746665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3256</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93897" e_stop="93545"/>
          <exon e_start="93051" e_stop="92535"/>
          <exon e_start="92410" e_stop="91932"/>
          <exon e_start="91830" e_stop="91680"/>
          <exon e_start="91519" e_stop="91448"/>
          <exon e_start="91345" e_stop="91277"/>
          <exon e_start="91078" e_stop="91007"/>
          <exon e_start="90845" e_stop="90667"/>
          <exon e_start="90373" e_stop="90147"/>
          <exon e_start="89789" e_stop="89663"/>
          <exon e_start="89576" e_stop="89508"/>
          <exon e_start="89266" e_stop="89077"/>
          <exon e_start="88819" e_stop="88687"/>
          <exon e_start="88374" e_stop="87757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTTAGTTTTTACCTAGTAATGCTTCAAAAATTGAAACCATTGGAAGTCATAAGTCCCAGTTTGCTGGTATCTGCAAAACCTATCTTGTTCCCTCCTACCTATTTTCGCTTTTTAATCAGTTTTTCATTTTAAAATTACAGAAAATCATGAGTTGGAAATTGGATTTTGTAGATAACCAAAGTTTAATGAGATAGGCATAGTCAGGTTTTGAGTTGGGATGACCTGATAGGGCAATTTTCTTCCATGAGAATAGGCTGATGGAAGTAGATAATTGCTGGAACATAAGGTTGGTCAACTGTGTTATCATCTGCCTGGTGATATATATACAATCTGCCTTTGCACAAGAAGGTGAGTCTACATATATCATGTTTGAAGTTTTTTTTAGTTTGACAATGATATAAGAGTTACCAATTGGTTTGATATCAATAAGATAGTTGCTCTTTCCTCTATTGTGAATGATATTGATCATCGTCATCCTGTTGATCTCTATAACGTTTGTTGAATTCACTCAAGAACCCTAAGAATTCCCAAATAATCACCACATGAAGACTGATATCATTTGTCAAAAAGAAAAAAATTGCCTCAAACTATCATATAAATCTGTGTTTGATTACTCCACAAAGTGCTGCAAAACTCAACACCTCTAAACCTACTTCCACTGCATAAGTAGATCGTATTGACTACAAATCGAAAAAGAGCATAAGCAGATCAGGTAAAATAAACTTACCTGTCTTACAAAACACAGTAACCAGCTATTCGTAGCATATATATGTAATTGCAGATATGTCACATAATTAGGTTACTTAATCTAACTGATAAATTCCCATGTGGTTTCGAGCAGGATTTCTAAGTATTCAGTGCTGTGCTACTGCAAACTTTACGGAACCACGTACCAACTTAAGTTGGATTTCAGATGGAATTTGGTTCCCTGAAAATCAGAGTTGCATATCAAGGCCAGTGTACAAGAGTGAACACTATGAACGAGCTCGATCTTTTAGCTCAGACATTAGTCATAAGTGGTGTTACAGCTTGCCAACCAGGAAAGAGCATGACTATCTAGTAAGAGGTACATTTCTTTCTGTCAAACAAGAGAAGACTCTCCCACATAGTTCTTTTGTTGTTTTGATTGGTGTCACACCAATAGCCACAGTGAAGTCATCTGATGAACTTAAGGTTGAGGGAATTTTTAGAGCTACTAGAAGCTATACAAACTTCTGCCTATTGAAAAAGAAGGGGAATCCTTACATTTCTAAGGTTGAACTCAGACCGATAAATTCAGATTATCTCAAAAAGGAGCCTTCAGAAATACTCAAACTTGTACATAGAGTAGATGCTGGAAATAAGGCTGCGGAAATCAGGTATTCTTTCATCCTATCACACAATTATATTTTGGATTCGAAACAGAGTATATTCTTTCATAGTAACAAACATGTTATCATATCAAGTATCATGAAGTGATAATGTGAAGACTTGTCAACTCAGGTACCCATATGACCAGTACGATAGAATTTGGAGACCAGCCTCAAATCTAGAATCACAAGTTACTCAAACGCCGCCATCCATTATTAAGCATGTCTTTGCAAGAAAACATAGTTTATTACCTCCTGCATTCGTATTACGAACAGCCCTCACCCATCCAGAGAGATTGGACTTCTTGCATGAAGACCTTGACACAGGATATTATACTTACTCTCTCTTCCTGTACTTTCTAGAGCCCAATGACTCAGTTCAAGCTGGAGAAAGGGTGTTCTATATATACATTAACAACGAAAAGAGACTTAAGGTTGATATACTGGCTAGTGGTTCCAGATACCTGGATGTAGTTCTGAATTTCAGAGCAAATAGGTCTGTCAACCTGACAATGATCAAGGCCTCAAATCTATCTCAATTGGGACCCATTTGTAATGGTTATGAGATTTTAAAGGCTCTTCCTCGTGTTAAAGAAACAGCCACTGAAGAAGGTAATTTTACTCGAAAAATATGCATAGTAGCAGAATTTAAGATAGCAGTAGTAGAAAAGCATTACAGAAAAGTGCATTTATTATCTCTTTATATGTTTCAGTTGACATAATGGCGAATGTCAAGAAGGAATTATTGCAACAAAACAAAAACAATGAAATATGGAAGAGTTGGTCAGGAGACCCTTGTCTTCCCCTTCCCTGGCCGGGCCTAACTTGTGATCGAGTTAATGGTACTTCAGTCATCACTCAGATGTAAGTTATTCCCTCTATATCAAATACTCAAAGCAGTTTGTTTTTCTGAACATTATCAAATAATATGTCTTACCATTTTTTCCACCTCATTTATCCGTAGCATAGTAAGCACATTTGAGATAGATAGATTTAATCATTTTTCTCTTATTCCCTACCACAGAGATCTCTCCTCAGGTGGCCTTAGTGGACCTAGCCCTCCTAGCATCCAAAAACTGATGCACCTGAGAAAACTGTACGTCCAAGCCTTTGTCATCAACACTAATTCATTTTCTTTTAAAATAAATTTACAATCTGGTATAGTTTTACTAAGCAATCAAGTTATTTGCCAAGACAGGAATATCAGCATTAATGGCTCTAGTGGCACAAATTCACTCTTTACATCATACTTCACATACTCTACAAGGTAAATCTTCTATGTTGGTTTCCACATAAAATAATTGCAGAACGTGAAGAAGTTAAATAATATCACACAGAGGATTAACCTCTGAAAAAAATAACAAAGCTGTACAAAATGTTTAGTAGCAAGCTGTCTTCATGCTTCATATGTTATGATAAAAAAGTATGATGTGAAACTAATATCTTTGTCTATTTGTCCCTCCAGATACTTAAGCAGCAGGATTCATATTAGCAACAAGCTTTCTAGAAGCATAAAAGAATCTAATATTACAACAGAGTATGAAACCACTGCCCTGTCTTCAGAAAAAGAAAACAATTTCTATCATTTTACATTGTCCACTTTTTCTCTGAGGGTGGGGGAAAGCAATGCGATATCAAGAGCAGGGAACTGACAAAGAAGAGAAATAAACTAATTTCTTTTTTTTTTTTGCATTTCAGCAAAGGGATGGCTAATGTTAAACAAAACTCAAGTTCAACACATAAACTTGTGATTGGAGCAGCTGTAGGTACAGCCCTCCTGGTGATCCTTGCAATTGTTATCTCTGTGGTCTGCCTCTTCAAAAGACGAGTAATGGCAGGACCAAAATTTCTTATGAGAAATTACTCGATCACAAGGAGTAAGTACACTCTCAGCACACTAGAAATAATCCTGCACGCATAATGCATGATAATATATCAAGATAATTTAAGAATCTTTTCTTGTTGCTTGCAATAGCTTAAGACTGGAGTCAACAAGCATAAATCATAAAAGTTTTCATGACTAAGAAAAGCAGAAACTGTTACTATATCATCTGTCGCAAAGAAGCTTTTTTGACAGGAACTCCAGAAATTTGAAACTGAGTTTATATCTTTAACATTTGGTACTTAAACTCAACGAAGCAATATGCTCAAAAAAAAATTTCAAATGCAGATGCAGTATACTCAGTACCAAGCATGGATACTACCATGATGAAGTCAATATCCTCCAGGAACTTCAAATTGGAATATATAGAAGCTATTACTCAGAACTACAAAACTTTGATAGGTGAAGGTGGCTTTGGATCCGTTTACCGTGGTACCTTACCTGATGGTGTAGAAGTGGCTGTAAAGGTCAGGTCAGCCACTTCGACTCAGGGAATTCGAGAATTCAATAACGAGGTAACAATCTAGAGTATTTGTAGACCAATTTCCTCCCAACTTCCTTATTTGCATCAAAGCAACAAAAACATGTTACCTAAAATGTGAGAAAAGCATCAGCACATGGTGTGAGCAATGAATCTTCTATTTTATATTGCTGTTTCACATAGGGAATAAACTAACGATATGCTCCACAAGATTCCTCACAGATCCGTGATGTTCTCTTCATAATTACTTCCGACAAGCAGTGTTGCCTCTGAAATGTCTTAGCTCTTCAGGAGCCATCTATATAATAATGCATCTTATCCATGATAGTTAACCCATGCATCACAAATAACACAGCTTGCAAGTTAACCACTGCTGTAATTTGTATTACAGCTTAACCTTCTGTCAGCTATCACACATGAGAACCTGGTCCCTCTTATTGGCTACTGCTGCGAGAATGAACAGCAGATTCTGGTTTATCCATTTATGTCAAACAGCTCCCTACAGGATAGGTTATATGGTACTGCATACATAAGCAAATTCCTGTCTATCACTTTATCATAAGAACCAGCACTAATTTCTTGTTTGTTCCTTCATCTTGTTTAGGAGGAGCAGCAAAAAGGAAGATTCTAGACTGGCCGGCCAGACTTTCCATTGCGTTAGGAGCAGCGAGAGGCAAGTAACACAAGACTCTGCAATTCATGCAGCTCTTCAATGAAATAAGCCAATATCTATGGACTTAAGCATGCGTAAAAAAAAGAGAACGTATTTCCTAAGAGACAAAGATTGAAGGCAGAATTTAATTGAGTTAAACAATCAATCATTCCCTAGCACTTGCTATGAAAACACATTTGTAAACAGAAAATACCTAAGTATGCCGTTTTCATTTATGTCATTTTCTCTTAACCTTCTTCAGGTTTGCTGTACCTTCACACATTCTCGGAGCGTTGTCTGATCCATAGGGACGTCAAGTCAAGCAACATACTCTTGGATCAGAGCATGTGTGCCAAGGTTGCTGATTTTGGATTTTCAAAATATGCATCTCAAGAAGGGGATAGTGGTACTTCTTTAGAAGTAAGGGGGACAGCTGGGTACTTGGATCCAGAGTAAGTATTTTCTCTTCTAGATTGTGTCGTCATTGGGAAATTAGAACCAGAGATAAGTTTCTAAAGCATAGCCTAATAGACAGCTCTGCTACCTTAATATGGGTTACACGAAGTGATTATTATTTGAATCATCCGCAAGAGATTCTATTAGTATATTTATTGACTTTATTTTCATTATAATTCACCATAGCACAAATGATTCAAAAATCTTTGGGGAAATCCAGCTCATGTCTTTTTCATGAATTCTTTCTGCATAGGTACTACTCGACCCAACGTCTGTCAGCAAAAAGTGATGTCTTCAGCTTTGGAGTTGTCCTACTGGAAATCCTCACAGGTCGAGAGCCTCTCAATATTAACAAGCCAAGAAATGAGTGGAGCTTGGTTGAATGGGTATGGCCCAACTTGGCAAGTTATTTCTTTTAACTGAAATTATCCAGATACAAATTGCTACTATTCCTGAATCCTCAGAACCAAACAGTCTCTTCCCATAATTTATCTGCAGCAAACTACAGTGCCATAAAAAACTGAAAGAGCATCTTTACAGAAAGAACTTCTGTTGTTATTACGACTTACGCGATAATTCACAGCTACTTAGATGATAAACTGATGTTGATTGCTTAACTACTTTGCAACTATATGTAATACTCTTTTGATTTGCATGTTTACATCTGATCACATGCAAGTATTCACTTTGAAATACAGGCGAAACCTCTAATAAGAAGCTCAAGAGTTGAAGAAATTGTGGATCCCACTATCAAGGGAGGGTATCATGGTGAGGCGCTGTGGAGAGTGGTAGAGGTGGCTTTGGCATGCACAGAGACATACTCGACTTACAGACCATGCATGGCGGACATTGTAAGAGAGCTCGAGGATGCATTGATAATAGAAAATAATGCATCAGAATACTTGAAGTCCCTAGACAGCTTTGGAGGATCAAACCGTTTCTCCGTAGAAAGGTCCATTGTCCTTCCACCTATTAAATCTCAAACAGAACCATCCAGTCTCCTCTCAAAACCAGCCCCTCCACAACCAAGGTAAATGCTGTAGAGGAATGGATTTAAACTGATTGCAATAGATAACAGAATTCTTAGAAAAGTGTTTGGAATTTTTGCAAATTACTCCTCAAATTCCTTTTAAGTTAAATCTCGTTAAACTGTTCATTCAGTAGAGCAGATTTTGTTATACATACCAGAGAACAGGAAACAGTGTTGTCAAAGGTGTGCTTAAGCCCCAAAGTGAGGCATACTTTCCTTGCGATTGAGATCTTGAAGACTGATATTTCACTTTATCGTAAAAAAAATTCAATTTCTTTGTCCATAA</genome_strand>
        <mrna_strand>TTTAGTTTAGTTTTTACCTAGTAATGCTTCAAAAATTGAAACCATTGGAAGTCATAAGTCCCAGTTTGCTGGTATCTGCAAAACCTATCTTGTTCCCTCCTACCTATTTTCGCTTTTTAATCAGTTTTTCATTTTAAAATTACAGAAAATCATGAGTTGGAAATTGGATTTTGTAGATAACCAAAGTTTAATGAGATAGGCATAGTCAGGTTTTGAGTTGGGATGACCTGATAGGGCAATTTTCTTCCATGAGAATAGGCTGATGGAAGTAGATAATTGCTGGAACATAAGGTTGGTCAACTGTGTTATCATCTGCCTGGTGATATATATACAATCTGCCTTTGCACAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTAAGTATTCAGTGCTGTGCTACTGCAAACTTTACGGAACCACGTACCAACTTAAGTTGGATTTCAGATGGAATTTGGTTCCCTGAAAATCAGAGTTGCATATCAAGGCCAGTGTACAAGAGTGAACACTATGAACGAGCTCGATCTTTTAGCTCAGACATTAGTCATAAGTGGTGTTACAGCTTGCCAACCAGGAAAGAGCATGACTATCTAGTAAGAGGTACATTTCTTTCTGTCAAACAAGAGAAGACTCTCCCACATAGTTCTTTTGTTGTTTTGATTGGTGTCACACCAATAGCCACAGTGAAGTCATCTGATGAACTTAAGGTTGAGGGAATTTTTAGAGCTACTAGAAGCTATACAAACTTCTGCCTATTGAAAAAGAAGGGGAATCCTTACATTTCTAAGGTTGAACTCAGACCGATAAATTCAGATTATCTCAAAAAGGAGCCTTCAGAAATACTCAAACTTGTACATAGAGTAGATGCTGGAAATAAGGCTGCGGAAATCAG............................................................................................................................GTACCCATATGACCAGTACGATAGAATTTGGAGACCAGCCTCAAATCTAGAATCACAAGTTACTCAAACGCCGCCATCCATTATTAAGCATGTCTTTGCAAGAAAACATAGTTTATTACCTCCTGCATTCGTATTACGAACAGCCCTCACCCATCCAGAGAGATTGGACTTCTTGCATGAAGACCTTGACACAGGATATTATACTTACTCTCTCTTCCTGTACTTTCTAGAGCCCAATGACTCAGTTCAAGCTGGAGAAAGGGTGTTCTATATATACATTAACAACGAAAAGAGACTTAAGGTTGATATACTGGCTAGTGGTTCCAGATACCTGGATGTAGTTCTGAATTTCAGAGCAAATAGGTCTGTCAACCTGACAATGATCAAGGCCTCAAATCTATCTCAATTGGGACCCATTTGTAATGGTTATGAGATTTTAAAGGCTCTTCCTCGTGTTAAAGAAACAGCCACTGAAGAAG.....................................................................................................TTGACATAATGGCGAATGTCAAGAAGGAATTATTGCAACAAAACAAAAACAATGAAATATGGAAGAGTTGGTCAGGAGACCCTTGTCTTCCCCTTCCCTGGCCGGGCCTAACTTGTGATCGAGTTAATGGTACTTCAGTCATCACTCAGAT................................................................................................................................................................AGATCTCTCCTCAGGTGGCCTTAGTGGACCTAGCCCTCCTAGCATCCAAAAACTGATGCACCTGAGAAAACT......................................................................................................GAATATCAGCATTAATGGCTCTAGTGGCACAAATTCACTCTTTACATCATACTTCACATACTCTACAAG......................................................................................................................................................................................................ATACTTAAGCAGCAGGATTCATATTAGCAACAAGCTTTCTAGAAGCATAAAAGAATCTAATATTACAACAGA.................................................................................................................................................................CAAAGGGATGGCTAATGTTAAACAAAACTCAAGTTCAACACATAAACTTGTGATTGGAGCAGCTGTAGGTACAGCCCTCCTGGTGATCCTTGCAATTGTTATCTCTGTGGTCTGCCTCTTCAAAAGACGAGTAATGGCAGGACCAAAATTTCTTATGAGAAATTACTCGATCACAAGGA.....................................................................................................................................................................................................................................................................................................ATGCAGTATACTCAGTACCAAGCATGGATACTACCATGATGAAGTCAATATCCTCCAGGAACTTCAAATTGGAATATATAGAAGCTATTACTCAGAACTACAAAACTTTGATAGGTGAAGGTGGCTTTGGATCCGTTTACCGTGGTACCTTACCTGATGGTGTAGAAGTGGCTGTAAAGGTCAGGTCAGCCACTTCGACTCAGGGAATTCGAGAATTCAATAACGAG.....................................................................................................................................................................................................................................................................................................................................................................CTTAACCTTCTGTCAGCTATCACACATGAGAACCTGGTCCCTCTTATTGGCTACTGCTGCGAGAATGAACAGCAGATTCTGGTTTATCCATTTATGTCAAACAGCTCCCTACAGGATAGGTTATATG......................................................................................GAGGAGCAGCAAAAAGGAAGATTCTAGACTGGCCGGCCAGACTTTCCATTGCGTTAGGAGCAGCGAGAG.................................................................................................................................................................................................................................................GTTTGCTGTACCTTCACACATTCTCGGAGCGTTGTCTGATCCATAGGGACGTCAAGTCAAGCAACATACTCTTGGATCAGAGCATGTGTGCCAAGGTTGCTGATTTTGGATTTTCAAAATATGCATCTCAAGAAGGGGATAGTGGTACTTCTTTAGAAGTAAGGGGGACAGCTGGGTACTTGGATCCAGA.................................................................................................................................................................................................................................................................GTACTACTCGACCCAACGTCTGTCAGCAAAAAGTGATGTCTTCAGCTTTGGAGTTGTCCTACTGGAAATCCTCACAGGTCGAGAGCCTCTCAATATTAACAAGCCAAGAAATGAGTGGAGCTTGGTTGAATGG........................................................................................................................................................................................................................................................................................................................GCGAAACCTCTAATAAGAAGCTCAAGAGTTGAAGAAATTGTGGATCCCACTATCAAGGGAGGGTATCATGGTGAGGCGCTGTGGAGAGTGGTAGAGGTGGCTTTGGCATGCACAGAGACATACTCGACTTACAGACCATGCATGGCGGACATTGTAAGAGAGCTCGAGGATGCATTGATAATAGAAAATAATGCATCAGAATACTTGAAGTCCCTAGACAGCTTTGGAGGATCAAACCGTTTCTCCGTAGAAAGGTCCATTGTCCTTCCACCTATTAAATCTCAAACAGAACCATCCAGTCTCCTCTCAAAACCAGCCCCTCCACAACCAAGGTAAATGCTGTAGAGGAATGGATTTAAACTGATTGCAATAGATAACAGAATTCTTAGAAAAGTGTTTGGAATTTTTGCAAATTACTCCTCAAATTCCTTTTAAGTTAAATCTCGTTAAACTGTTCATTCAGTAGAGCAGATTTTGTTATACATACCAGAGAACAGGAAACAGTGTTGTCAAAGGTGTGCTTAAGCCCCAAAGTGAGGCATACTTTCCTTGCGATTGAGATCTTGAAGACTGATATTTCACTTTATCGTAAAAAAAATTCAATTTCTTTGTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366142" ref_strand="+" ref_description="SGN-E366142 [cLPT-15-H16]">
      <seq>tccgtctttgatacaccagctaacttgaggacgattcagtgggtattcctccaagttcccttaacaaattcaattcaagcataggggcattcaagctttcaggatacatctcaggtatcaattcaagatttgtttccaaaaaggaccagtacaagaatcacttaataacatagctatgagtttggacagtgcttctgacattgagcagcgaagtagatatattcactgtttctgttgaacctaaactacccaagataaatttgttttgatccgactttgtggaacctagatgatatgcatgctttccctgcaagctttggccttaaaggagaggctctgggctccacttctgatgtttctttgttggaaattgttactaaaagtcacgggaggccagatggatatcgtaattttttgaagattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="110856" stop="113188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111058" g_stop="111096" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111097" i_stop="111187" i_length="91">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.621" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111188" g_stop="111262" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111263" i_stop="111500" i_length="238">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111501" g_stop="111663" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="277" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111664" i_stop="111912" i_length="249">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.588" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111913" g_stop="111924" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="289" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111925" i_stop="112755" i_length="831">
            <donor d_prob="0.483" d_score="0.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112756" g_stop="112886" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="420" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112887" i_stop="112979" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.163" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112980" g_stop="112986" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="427" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E366142" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111058" e_stop="111096"/>
          <exon e_start="111188" e_stop="111262"/>
          <exon e_start="111501" e_stop="111663"/>
          <exon e_start="111913" e_stop="111924"/>
          <exon e_start="112756" e_stop="112886"/>
          <exon e_start="112980" e_stop="112986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCTTTGATTCACCAGCTAACTTGAGGACAATTCAGGTCTGGTTTCTTCCATTTTGTTCATTTTCTTATGGTGAGGATGACCTGATTTGCACACGTGCTTCTTCTTCTCATTGCCGCTGTTGTCCAGTGGGGATTTCTCCAAGTTCCCTTAACAAATTGAATGCAAGCATAGGGGCATTCAAGCTTTCAGGATACATCTCAGGTCCTGATGTTTACACAGTGGAAGTATACATGCATGGATAAAGAGCTGTTATAAGTTATCTTTTCTACACTTTGTTTCTTTAACAACCACTGTAGGTCATTCAGTATTTCTGTATCCACTTATTTCAGTATATTGTCCTGACAAAGAAAAACGGAAAACTAATCTTTGGTTAACATTTACTAAATTATATGCTTGTTTTTTGACGGTGTTTTTGTTTTCCTTGAACTTCGTTATGCAGGTATCAATTCAAGATTTGTTACCAAAAAGGACCAGTACAAGAATCACTTAATAACATAGCTATGAGTTTGGAAAGTGCTTCTGACATTGAGCAGCGAAGTAGATATATTAACTGTTTTTGTTGAATCTAAACTACCCAAGATAAATTTTTTTTGATCCGACTTTGGAGCCTTCAAAGATGTCCGTGGAACCTAGGTGTGCTTTTTGTTGGCATTTATGACTTAGATTCCTGTTTTTTGCTTACGCAATCATTTCTGCTTCCCTTTAAATAATTTTGCAGTCTTTTTTTTCTTTTGACAATTTTACAATAATTTTTGTAAATTTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGCTATCTTTTGGAGATTGTGACATCCAGTTGTATATTAATTTTTGAGTGGGATCAGGGTAGAGGGTTGGCATATATTCTCAGGAGTTTTAAACTATTAGGTTAATCTAGGCCAATCTAATTCACAAGAAAAAATTCTGCTTTTCAGAAAAAATAGAGCCCTACCAAAACATTTAGGTCGATTTTCATTCTTCAGCTGTGAAGGTTGGAAACACAGCTTTGACCTATGAAGTATGTTATTGCTATTGATCTTTGGCATTATTCTAGAGACTGAAGAGCTGAAAATGTTGCTTGGCGTGACAGTTGGGTGGTTGTATGTGATTTAGTAGAAAGTTCCATTTCATAGTGCATCTTCTCTGTCCCATAAGGCTAAATGCTTCCTGCAGCCATGACAGATAACAAAGCTTTTGTCCTGATTCGTGTTTTGGCTTGGCAAAGTTAAGTTCCCTCACCCCCCCCCCCCCACCCCCCCACCCACACCAAACCACCCTTTTTTAAAAATTACACATGACCTTTCTCTTTTCTTATTCTTATTACTATCTCTGATCCATGTTATAAACCATGAGGATGTGGAGGGTTTGTCTTATGTGGAAGCTCAATAGAACTTTGTATGATTTCACAAGGGTTGTTGAGGAGTTGGTTTTCAACAGCCTCGATGCAGATACCACCAAGGTGTACTAATTTACCCTTTCAAAGTTTCAATATTTTTTTATGCTTTATTAGGTATGTAGAGTTATTTATATTGGTGCTTAGGTTTTTATAGCCCAGCTTATGTAGACTGTATATGTGTCTGTTTCTTTGTTTCTTTCATCTTCTGTTATGCTTCATTTTCGTCTGACCATTTTAACTATAGTTTCATATGCTTGCTTTACACCAGCGACATCAAACTATTGCCTTTCAGATGATATGCATGCTTTCCCTGCAAGCTTTGGCCTTAAAGGAGAGGCTCTGGGCTCCACTTCTGACATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAGGTAAAGTTGTTTTGAGTGTTAGTTGGTCATATCCATTAGGATAGGTATAAAACTACTATCTTGGTCTTTGTTCTTGCCATTGTTACAGGGCAGATTTTGT</genome_strand>
        <mrna_strand>TCCGTCTTTGATACACCAGCTAACTTGAGGACGATTCAG...........................................................................................TGGGTATTCCTCCAAGTTCCCTTAACAAATTCAATTCAAGCATAGGGGCATTCAAGCTTTCAGGATACATCTCAG..............................................................................................................................................................................................................................................GTATCAATTCAAGATTTGTTTCCAAAAAGGACCAGTACAAGAATCACTTAATAACATAGCTATGAGTTTGGACAGTGCTTCTGACATTGAGCAGCGAAGTAGATATATTCACTGTTTCTGTTGAACCTAAACTACCCAAGATAAATTTGTTTTGATCCGACTT.........................................................................................................................................................................................................................................................TGTGGAACCTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATATGCATGCTTTCCCTGCAAGCTTTGGCCTTAAAGGAGAGGCTCTGGGCTCCACTTCTGATGTTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAG.............................................................................................ATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215042" ref_strand="+" ref_description="SGN-E215042 [cLEC-78-A14]">
      <seq>catttctttgttggaaattgttactaaaagtcacgggaggccagatggatatcgtaattttttgaagggcagattttgtagacaagatgttggtgcaacagggaattaatgtataagcctatctcacacaggagttgatttttgtttgctagtataacggcccaaattgatggataaaagatgtggaaaaagaggttcaggcttagagttgcaaagcttcactttcttccctgcagccaaagaaacttactggagagtgcattcagtagagagattcaatcttcacagaatattctgtgcagaagtgcttctgaaaagcatgatccggagtccagattcctctgtcagagcaaaagttcaagtcgatcaattggctctcctgctcattgcacagctggcgtgaactggaaatccaaaagctctgcgcaacccctttcatctaatattttacctagagaggatgatttcctggataacaaattcagtgcttcagttagatccaactataaatctgactgtgaggcaggttcaggatgggaggatatgattttcaaacaattgtagctggcagttctagagaggatgcttatttagggtatcacttgaacttgatgacagntcaaatgtgatgcatgagagaaggaaacatttatttggagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="112520" stop="120876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112820" g_stop="112886" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112887" i_stop="112974" i_length="88">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112975" g_stop="113058" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="151" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113059" i_stop="113576" i_length="518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113577" g_stop="113610" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="185" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113611" i_stop="120097" i_length="6487">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120098" g_stop="120576" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="663" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E215042" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112820" e_stop="112886"/>
          <exon e_start="112975" e_stop="113058"/>
          <exon e_start="113577" e_stop="113610"/>
          <exon e_start="120098" e_stop="120576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAGGTAAAGTTGTTTTGAGTGTTAGTTGGTCATATCCATTAGGATAGGTATAAAACTACTATCTTGGTCTTTGTTCTTGCCATTGTTACAGGGCAGATTTTGTAGACAAGATGTTGGTGCAACAGGGAATTAATGTATAAGCCTATCTCACACAGGAGTTGATTTTTGTTTGCTAGTAAGGAAATTTGTTGAGATTTTTCTCTTTGCGGTTGTTGTTCATGATGTAGTTTTACAACCAACTAGTTCGAAGGAACCAAATGCAGTACTTCTAGTATGCTCACAATTCAAACAAATAAAAATATTGATTTACTTACTTTACTTCTAAAGCTATATTGATCTTTTAGTTTTCATATATAATCTTGAAGCCCAAAGAAGGTCTTGCTTTCTCTAAAAGTGTCTCTGCTAAGAATCTCCCTTGTGCATTCCAGTATCTCCTTTAAAATTGTTGATATTGAAAGGTGTGTTTGTTGTACCACTAACTTTAGGTTTTTACCTATCTGGTTTCTTACATTTTGTTGTTCATTTGCATGTCATGAGGATGACCTGCTTTGCACACATGCTTCTCCTTCCCCATTGCCGCTATTGTCTAGTGGGTTTGGGTTTCATCTTAGTTCCCTTAATAAATTGAATGCAAGCGATGGTTTATTCTAGCTCTCTGGATACATCTCAGCTCATGATGTTTACACAATGTAGGTATAACGGCCCAAATTGATGGATAAAAGATGTGGTAAGTTATTTTTTCTACACTTTGTTTCCCCTAAAAACCATTTCAACTTGCAGGTCCTTCAATATTTCTGTATCCAATTAGTTCAGTACATTTTCCTGACCTGAGAAAATGGAAAACTAATCATTGGTTAACATTTATTATATTTGATGCTTGTTTTGTACAGGGCGAAATGGTCTGATGGACCCATATACTTGTATGAGTTTATATTCTGACCTTTTAACTTTGCTCTTTGTCAACTGAATCTTTTAACTCAATAAATCTCAACATTTTAAATCCCATTGGCTTTGTGTGAACTTCAAACGCCCAATGAAAATGACATATCCTCATCCACATCAGATTTTACCTGACACATTATTTATTATTTAATTTTTTAAAAAAGTTAATTTTTTCTTCTTTTTCACTCCATTACTCCATAGTTACTTGAGCAACTTCTAGAATTCTTTCTTCCATTGATATCAATGAATCACCATTACAATACCTTAATATATCTTAGTATTTGCACATAATTTCACAATATACTTTATCTAATTTCCCAAAGATATTCAACAATTACTTTCACCATTACCCTATAAAAATGAAAAGAAAGATAAATAAAGAACAATTTTGATAACAAAAGAGGTCAAGATACTTATGTTTCTTCCGACAACTGTGTATCGCAACAATTTTTTGAATTTTCCTTTGTTTATTATGTTCAATGTTTTTGCACAATTTCGTTTTAATTTAGGGGAAAGAGAAAAAGAAATTGGAAAGGAGCGGAGAAAGGGAGAAAGAGCGAATGGGGGTATGGGTATAGGATAGGGAAACTGAAGTAATGGTAGAAGAGGAAAAGAAACGGGGATGGGTGGGGGATAGGAGAAAGAATGATATATTTATTTTAATAATTGTCTTCTGTTTATTCTATTTGTTCTTTAAACTATTTTTAGTCTAAATTCTAGTGTCTACGCTCTTTTTGGCGTGGAATCTTGTATTTATTCTAACTCATTAATCAAGTTACCACATAAGCACGGTCAACGGTTGAAGGGATTTAAAATGTTAAATTTCATTGAGTTAGAGAGTTCAATTGACAAAGTTCTAAGTTCAAAGGTTCAAAATACAAATGCATACAAGTACGAGAGGACCGTTTCGCCTTTTGTGCAGTGTTTTTGTTTTCCTTGACCTTCGTAATGCAAATATCAATTCAAAATTTGTTTCCAAAGGACTAATACATATCTTACTTATAATAACATAAATATGTGTTTTAAAGATGCTTCTAACATGGAGCAACGAAGTAGATCTCAGATGAATTCATTGTTTTTGTTTATCCTGAACTTCCCAAGATCTTTATATGATTTGAATTCTAGAGCCTTCAAATGACCTCTGTGGAATGTAAGGCGAGATTTTCAGTTGGCACTTATTATTTACTCCTATTTAAAAAAGAATTGTGAGAAATATGGGGAAAAAATAATATTGAATTGTTGTTTTTTACATTATCACGTTGAGAACCTATTTATAGACCTTAAAATACAATCCTTTACCAAGTAGGATACCATTTAGTATTTCTATTCCTATTCTAATAGGATTGTATAAACCTAAACATATTCCTATTCCAATAGGATTGTATAAACATATTCCTATTCTAACACTCCTCCTAAAGTTAGTGCGTGCAATTCATGTGTACCTAGCTTGTTACAAATGTAATTAACATGGTGACCGATGAGGGGCTTGATGAGATATTTGCGAACTTCACAAAATTGACGGTCATTCTCAATGTGCATGTCTTCTCATTAAATATTGGATTTGATGCATAATGTCAGTCAATCTCAGTGTGCTTAATCTTCGCATGAAATACTGAATTTGATGAATATTTGATGCATAATGTTGGTGTTGAACTTTCCAAACCAAGCTTGAGAAATATTGTTCTAGACCATGGAGTGATTTGCACAATCGACATGCAAGTCTACTGAACTCCCCTGAGCAACAAAGTGCTCAAAACCTAGTATATGTATATGGATCTTGTCGGAATCAATAGATGAGTCGATATTAAACAAGTCACAGAAAAACTGGTTGGAACATATGATCATATGTCAGAGTATTAAATTTGATGGCTAAAAGTGGTCACAATCTTAGGAATAAAATTATATAGGTAGGGTCGGAATGATGTCACGACCCAACTAGAAAATAGAAATTAAATATGATAGTTTGAATTGATGGAGCAACCCCGTTGAAAAAGAGAAGTAACATGGCACAACCTTAATGAAAAAGAAAAATTATATAGGTTGGATTGAAATGATCGCATAACCTACGCAAATCAAATTTGAGGAGTCACTGGAAAGACGAATGGAACTATGCAAATCGAATATGAGTCATTGAAAAGACACATGATGCTATGCAACTCAGATATGAGAAAATAGTCGGTAAAAATCACGGTACTATACAAATTAAATATGAAAAGTAGTCTGAAGAGATGCACGGTGCTACGCAAATCAGATATGCGATAAAAAGGTAGTCACCGAGAGGATGGTACTGTGCTACACAAATTATATATGAATAAGCAGCCACTATAATGATGGCACAGTGCTACACAAATTAAATATGAAAAAATGCTCATCATAATGATGGCACGGTGCTACAAAAATTAAATATGAAAAACTAGTCACTAAAATGATGGCACGGTGCTACACAAATTAGATACAAAAAAGTAGTCATTGGAATGATGACACGGTGCTACACAAATTAGATATGAGAAAATAATCACCACAAAGATACACGGTGACCCAACTTTTGCTAATATAATCATTAGCCAGAGGGGTGGGCCACCGGCAGTGGAAACTCTTTGATTTTCTACCAAGATCGTAGAAGCTCTGATACCATGTGAGAAATATATTGAATTATTGTTGTTCTTTTACATTATTACATTTGTGAGAAATATAGGAAAAAGATATTATTGAATTGTTATGTCTACATAATAACATTGAGACCCTATTTATAGACCATAGAATACAATCCTTTATCAAGTAAGATACTATTTAGTATTCCTATTCTAATAGGATTGTAATAACCTATTCCTATTCCAATAGGATTGTATAAACCTATTCCTTTTCCAACACTCCCCCTCAAGCTAGTGCATACAATTCATGCACCTGAACTTGTTACAAATGTAATTATCACGAGAACTGCTGAGGGGCTTGGTGAGATATCTGCAAGTTGATCAATGGACTTCACAAAAAATTGACGATCAATCCTAATGTGCTTGTCTTCTCATTAAATACTGGATTTGATGCATAATATCAGTAAAAATAGAGATAAAATTCTAGTATTGAACTTCCCAAACCGAACCTGCAAAGACTGCTTTAGACCATAGAATGACTCACTTATACAAGTCTACTAAATTCCCTCCGAGTAACAAAGTGCTCAAAACCTTGTATAAAGTATATAGATCATGTTGGAATCAATTGATGAGTTGATATTAAAACAAGTTACCGATAAATTGGCTTGAACATGCTCATATATCATAGTATTAGATTTGATTGCTAAAAGTGGCCACAATCTAAGAAATAAAATTATATAGGCAGAGTCAGAATGATGTCACAACCGAACTAGAAAATAGAAATTAAATAGGATAGTTCGAATTGATGGAATGATCCCATTGAAAAAGAAAAATAATATGGGTAGGGTTGGAATGATGGCATAACCCTACGCAAATCAGATCTAAGGAGTCACCGGAAAGACGAATGGAACTATGCAAATCAAATCCGAGTCACTGAAAAGACACATGATGTTATGCAACTCAGATATGAGAAAATAGTTCGAAAAAATTCACGGTACTGCACAAATTAAATATGAAAAGTAGTTCAGGAGATGCACGGTGCTACGCAAATCAGATATGCAAAAAAAAACATAGTCATCCAAAAGATGGCACGGTGCTACACAAATTATATATGAAAAAGTAGTACTTGAATGATGACACAGTGGTACACAAACTAAATATGAAAAGTAGTCACCGAAATGATAGCACGGTGCTACACAAATTAAATATGAAAAAGTAGTCACCGGAATGATGGCACGGTGCTACACAAATTAAATATGACAAAAGTAGTCACCGAAATGATGGCATGGTGCTACACAAATTAAATATGAAAAAAGTAGTCACTGGAATGATAGTGCGGTGTTACACAAATTAGATGTGAAAAAATAGTCACCAGAAAGATACACAGTGACTCAATTTTTATTTTTTTTGCTAACATAATCATTGGCCGGAGGAGCGGCATATGAGTAATAGCCGCCCGCCGGCAGCGGAAGCTCTTTGATTTTCCACCAAGATTGTAGGGGCTCTGAAACCATGTTAGAAATATAGGGAAAAATATTATTGAATTGTTGTTGTGTCTACATAATAACATAAAGACCCTATTTATAGACCATAGAATACAATCCTTTATCAAGTGGGATACTATTATCCTACTTAGTATTCCTATTCCTATTCTAATAGGATTGTATTAATCTATTTCTATTCCAATAGGATCGTATAAACCTATTCCTATTCTAACAACATTGAGACCCTATTTATAGATCCAATCCTTTACCAAGAAGGATACTATTTAGTAATCATATTCCTATTTTATAGAATTGTATAAACCTATTCCCATTCTAATAGGATTGTATAAACCTATTCCTATTCCAATAGGATTGTATAAACCTATTTCAATTCTAACAAGAATGACCCAATTTCTTTTTTAGTTTGTTTAAAAGAGAATGACACCTTTCCTTTTTTAGCAACACTTTAACTTCAACTTTCCACATGGCATGTTTAAGGCCACAAGATTAAAGGACATTTTTGGTACATTTTACATAATTTTAATTAAGAACCACAAAATTAAAAAGTCTTCTTACTTTTCTTAAACTCCGTTCCAAGTCAAAGTAGACCATTCTTTTTTAAACAAAGGGAGTAATTTTTTTGGGGTTGGGAAACGAGTGTGAGCATTAGGATTTATTTTGTAGATTTGAGTTTGTGCTAGGGCTTGTTTGTGATTTTGGTTTGGATTGTTTTCTGTTAAAAAATATTTGAAAACACCCAATCACTTTTTGAAACTCTAACGTGGGTTAAATAAATAGGTTAAAACTGGCTAAACACTATTTGTTATTCCTAATCGTGTTGGACTCCGAACTATTAAAAAGGAGCCTCTGACAGGCAAGGCCTTGCGTCACAGATGTTCGCGTAGAACAAAATGAGCTCCCTTTGTTATGGGAGAACAATGCAAAACCACGTTTCTAGCTTCTTTTGGTTGCAAAACCATATAGGCCAATGCTAACTAGTAAATGTCATACATATTTGTTTCTTGATTGGAGTGTAGTATTTCTTATTATAATGTGTTTGTTGCTTCTAAGGAGGACAATTCTTGCAGTTTGAACGTAGTCTCCTTATTTTTGCTTACCGAATCTTCTTTTGCTTTCCTTTAAATGGATTTTGCAATAATTTTCAAAAATTTTGTCAATTTTTCATAGATCTAGATGCTACATCAATCTTCTTGGAGTCTTGTTATCTTAAAGAGATCGTGATATCCAGCTGCATATTGATTTTTGATTTCTGACCAAGTATTTTAAAAGGATATGGTTCTTTGTTGTTTCTCTCTGATTTCTTGAAGTTTCTAATAGAAAATTTATTGCATACAGTGGTAGTCCTTATTAAGAAGTTTGTGATATTTTTGTTCCTGCACCACGAGAAGAATATTTGTCACGGGATGTATATTTTTCTCATAAGTATCAATTTTGGGTTGTACTAGCCCCAGAGCTTTGGTCAGTGATGATGACTCAAAACGGGATGTGAAGGGAATATGTCACAAGTTTGAAACCTATCATCGACAATGAGCTTGATATATAAGTGAGATCAGGGTAGAGAGGTGCCTCCAATTCTTAGAAGTTTCAAACTTGTAGGTCAATCAAAGCAGTCTAATTCACAAGATAATTTTATGTTATTTGAACAAAAATTGAGCCCTAATATGACTGAGACAAGTATTAGAGAAGGAAGGGACCCCAATCCTGCCATAAGGAATATGAATGTTGAAGAGAATAAGCTTATGGTGGCTGGTTGGTTCTTCATGTTACTTGTAGGATTGGGGCCGTCCTTCTCTTTATTGAGGATACTGTCGTGAGGAAGTAACTCTTGGTGAGAGCAATTGTACCCGACATTTTTATGCAACATAACTTGGGATTCATTGTAAATTTGGCTTTGTTTTCTCCACATTCCCTTCCCTGTAAGATGTAGCACCCCACTGCCTCCCTAGAAGAGGAGGGTGGGGGGAAGGAAACAAATTGTAGAAGGTTGGTTAGTGGAAGAGACAGTTAATTATGTATTTCAGTGTTATGTCCATCGTGTAGTTGTATAACTTACTTTTCTCTTAAGCTACTTTAAGAAAACCTAGATAAGATTTTAGTTTTGGAAATATCTTCCTCATCTATTGCTATTCCATTCCCTGCTGCTCTTTTTTGATTTACCTGTGAGTTATGTGATCAGGAAAAAGAGGTTCAGGCTTAGAGTTGCAAAGCTTCACTTTCTTCCCTGCAGCCAAAGAAACTTACTGGAGAGTGCATTCAGTAGAGAGATTCAATCTTCACAGAATATTCTGTGCAGAAGTGCTTCTGAAAAGCATGATCCGGAGTCCAGATTCCTCTGTCAGAGCAAAAGTTCAAGTCGATCAATTGGCTCTCCTGCTCATTGCACAGCTGGCGTGAACTGGAAATCCAAAAGCTCTGCGCAACCCCTTTCATCTAATATTTTACCTAGAGAGGATGATTTCCTGGATAACAAATTCAGTGCTTCAGTTAGATCCAACTATAAATCTGACTGTGAGGCAGGTTCAGGATGGGAGGATATGATTTTCAAACAATTGTAGCTGGCAGTTCTAGAGAGGATGCTTATTTAGGGTATCACTTGAACTTGATGACAGTTCAAATGTGATGCATGAGAGAAGGAAAACATTTATTTGGAGCTGT</genome_strand>
        <mrna_strand>CATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAG........................................................................................GGCAGATTTTGTAGACAAGATGTTGGTGCAACAGGGAATTAATGTATAAGCCTATCTCACACAGGAGTTGATTTTTGTTTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACGGCCCAAATTGATGGATAAAAGATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAGGTTCAGGCTTAGAGTTGCAAAGCTTCACTTTCTTCCCTGCAGCCAAAGAAACTTACTGGAGAGTGCATTCAGTAGAGAGATTCAATCTTCACAGAATATTCTGTGCAGAAGTGCTTCTGAAAAGCATGATCCGGAGTCCAGATTCCTCTGTCAGAGCAAAAGTTCAAGTCGATCAATTGGCTCTCCTGCTCATTGCACAGCTGGCGTGAACTGGAAATCCAAAAGCTCTGCGCAACCCCTTTCATCTAATATTTTACCTAGAGAGGATGATTTCCTGGATAACAAATTCAGTGCTTCAGTTAGATCCAACTATAAATCTGACTGTGAGGCAGGTTCAGGATGGGAGGATATGATTTTCAAACAATTGTAGCTGGCAGTTCTAGAGAGGATGCTTATTTAGGGTATCACTTGAACTTGATGACAGNTCAAATGTGATGCATGAGAGAAGG-AAACATTTATTTGGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214863" ref_strand="+" ref_description="SGN-E214863 [cLEC-78-A8]">
      <seq>catttctttgttggaaattgttactaaaagtcacgggaggccagatggatatcgtaattttttgaagggcagattttgtagacaagatgttggtgcaacagggaattaatgtataagcctatctcacacaggagttgatttttgtttgctagtataacggcccaaattgatggataaaagatgtggaaaaagaggttcaggcttagagttgcaaagcttcactttcttccctgcagccaaagaaacttactggagagtgcattcagtagagagattcaatcttcacagaatattctgtgcagaagtgcttctgaaaagcatgatccggagtccagattcctctgtcagagcaaaagttcaagtcgatcaattggctctcctgctcattgcacagctggcgtgaactggaaatccaaaagctctgcgcaacccctttcatctaatattttacctagagaggatgatttcctggataacaaattcagtgcttcagttagatccaactataaatctgactgtgaggcaggttcaggatgggaggatatgattttcaaacaattgtagctggcagttctagagaggatgcttatttagggtatcacttgaacttgatgacagtttcaatgtgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="112520" stop="120847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112820" g_stop="112886" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112887" i_stop="112974" i_length="88">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112975" g_stop="113058" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="151" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113059" i_stop="113576" i_length="518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113577" g_stop="113610" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="185" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113611" i_stop="120097" i_length="6487">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120098" g_stop="120547" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="635" r_length="450" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E214863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112820" e_stop="112886"/>
          <exon e_start="112975" e_stop="113058"/>
          <exon e_start="113577" e_stop="113610"/>
          <exon e_start="120098" e_stop="120547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAGGTAAAGTTGTTTTGAGTGTTAGTTGGTCATATCCATTAGGATAGGTATAAAACTACTATCTTGGTCTTTGTTCTTGCCATTGTTACAGGGCAGATTTTGTAGACAAGATGTTGGTGCAACAGGGAATTAATGTATAAGCCTATCTCACACAGGAGTTGATTTTTGTTTGCTAGTAAGGAAATTTGTTGAGATTTTTCTCTTTGCGGTTGTTGTTCATGATGTAGTTTTACAACCAACTAGTTCGAAGGAACCAAATGCAGTACTTCTAGTATGCTCACAATTCAAACAAATAAAAATATTGATTTACTTACTTTACTTCTAAAGCTATATTGATCTTTTAGTTTTCATATATAATCTTGAAGCCCAAAGAAGGTCTTGCTTTCTCTAAAAGTGTCTCTGCTAAGAATCTCCCTTGTGCATTCCAGTATCTCCTTTAAAATTGTTGATATTGAAAGGTGTGTTTGTTGTACCACTAACTTTAGGTTTTTACCTATCTGGTTTCTTACATTTTGTTGTTCATTTGCATGTCATGAGGATGACCTGCTTTGCACACATGCTTCTCCTTCCCCATTGCCGCTATTGTCTAGTGGGTTTGGGTTTCATCTTAGTTCCCTTAATAAATTGAATGCAAGCGATGGTTTATTCTAGCTCTCTGGATACATCTCAGCTCATGATGTTTACACAATGTAGGTATAACGGCCCAAATTGATGGATAAAAGATGTGGTAAGTTATTTTTTCTACACTTTGTTTCCCCTAAAAACCATTTCAACTTGCAGGTCCTTCAATATTTCTGTATCCAATTAGTTCAGTACATTTTCCTGACCTGAGAAAATGGAAAACTAATCATTGGTTAACATTTATTATATTTGATGCTTGTTTTGTACAGGGCGAAATGGTCTGATGGACCCATATACTTGTATGAGTTTATATTCTGACCTTTTAACTTTGCTCTTTGTCAACTGAATCTTTTAACTCAATAAATCTCAACATTTTAAATCCCATTGGCTTTGTGTGAACTTCAAACGCCCAATGAAAATGACATATCCTCATCCACATCAGATTTTACCTGACACATTATTTATTATTTAATTTTTTAAAAAAGTTAATTTTTTCTTCTTTTTCACTCCATTACTCCATAGTTACTTGAGCAACTTCTAGAATTCTTTCTTCCATTGATATCAATGAATCACCATTACAATACCTTAATATATCTTAGTATTTGCACATAATTTCACAATATACTTTATCTAATTTCCCAAAGATATTCAACAATTACTTTCACCATTACCCTATAAAAATGAAAAGAAAGATAAATAAAGAACAATTTTGATAACAAAAGAGGTCAAGATACTTATGTTTCTTCCGACAACTGTGTATCGCAACAATTTTTTGAATTTTCCTTTGTTTATTATGTTCAATGTTTTTGCACAATTTCGTTTTAATTTAGGGGAAAGAGAAAAAGAAATTGGAAAGGAGCGGAGAAAGGGAGAAAGAGCGAATGGGGGTATGGGTATAGGATAGGGAAACTGAAGTAATGGTAGAAGAGGAAAAGAAACGGGGATGGGTGGGGGATAGGAGAAAGAATGATATATTTATTTTAATAATTGTCTTCTGTTTATTCTATTTGTTCTTTAAACTATTTTTAGTCTAAATTCTAGTGTCTACGCTCTTTTTGGCGTGGAATCTTGTATTTATTCTAACTCATTAATCAAGTTACCACATAAGCACGGTCAACGGTTGAAGGGATTTAAAATGTTAAATTTCATTGAGTTAGAGAGTTCAATTGACAAAGTTCTAAGTTCAAAGGTTCAAAATACAAATGCATACAAGTACGAGAGGACCGTTTCGCCTTTTGTGCAGTGTTTTTGTTTTCCTTGACCTTCGTAATGCAAATATCAATTCAAAATTTGTTTCCAAAGGACTAATACATATCTTACTTATAATAACATAAATATGTGTTTTAAAGATGCTTCTAACATGGAGCAACGAAGTAGATCTCAGATGAATTCATTGTTTTTGTTTATCCTGAACTTCCCAAGATCTTTATATGATTTGAATTCTAGAGCCTTCAAATGACCTCTGTGGAATGTAAGGCGAGATTTTCAGTTGGCACTTATTATTTACTCCTATTTAAAAAAGAATTGTGAGAAATATGGGGAAAAAATAATATTGAATTGTTGTTTTTTACATTATCACGTTGAGAACCTATTTATAGACCTTAAAATACAATCCTTTACCAAGTAGGATACCATTTAGTATTTCTATTCCTATTCTAATAGGATTGTATAAACCTAAACATATTCCTATTCCAATAGGATTGTATAAACATATTCCTATTCTAACACTCCTCCTAAAGTTAGTGCGTGCAATTCATGTGTACCTAGCTTGTTACAAATGTAATTAACATGGTGACCGATGAGGGGCTTGATGAGATATTTGCGAACTTCACAAAATTGACGGTCATTCTCAATGTGCATGTCTTCTCATTAAATATTGGATTTGATGCATAATGTCAGTCAATCTCAGTGTGCTTAATCTTCGCATGAAATACTGAATTTGATGAATATTTGATGCATAATGTTGGTGTTGAACTTTCCAAACCAAGCTTGAGAAATATTGTTCTAGACCATGGAGTGATTTGCACAATCGACATGCAAGTCTACTGAACTCCCCTGAGCAACAAAGTGCTCAAAACCTAGTATATGTATATGGATCTTGTCGGAATCAATAGATGAGTCGATATTAAACAAGTCACAGAAAAACTGGTTGGAACATATGATCATATGTCAGAGTATTAAATTTGATGGCTAAAAGTGGTCACAATCTTAGGAATAAAATTATATAGGTAGGGTCGGAATGATGTCACGACCCAACTAGAAAATAGAAATTAAATATGATAGTTTGAATTGATGGAGCAACCCCGTTGAAAAAGAGAAGTAACATGGCACAACCTTAATGAAAAAGAAAAATTATATAGGTTGGATTGAAATGATCGCATAACCTACGCAAATCAAATTTGAGGAGTCACTGGAAAGACGAATGGAACTATGCAAATCGAATATGAGTCATTGAAAAGACACATGATGCTATGCAACTCAGATATGAGAAAATAGTCGGTAAAAATCACGGTACTATACAAATTAAATATGAAAAGTAGTCTGAAGAGATGCACGGTGCTACGCAAATCAGATATGCGATAAAAAGGTAGTCACCGAGAGGATGGTACTGTGCTACACAAATTATATATGAATAAGCAGCCACTATAATGATGGCACAGTGCTACACAAATTAAATATGAAAAAATGCTCATCATAATGATGGCACGGTGCTACAAAAATTAAATATGAAAAACTAGTCACTAAAATGATGGCACGGTGCTACACAAATTAGATACAAAAAAGTAGTCATTGGAATGATGACACGGTGCTACACAAATTAGATATGAGAAAATAATCACCACAAAGATACACGGTGACCCAACTTTTGCTAATATAATCATTAGCCAGAGGGGTGGGCCACCGGCAGTGGAAACTCTTTGATTTTCTACCAAGATCGTAGAAGCTCTGATACCATGTGAGAAATATATTGAATTATTGTTGTTCTTTTACATTATTACATTTGTGAGAAATATAGGAAAAAGATATTATTGAATTGTTATGTCTACATAATAACATTGAGACCCTATTTATAGACCATAGAATACAATCCTTTATCAAGTAAGATACTATTTAGTATTCCTATTCTAATAGGATTGTAATAACCTATTCCTATTCCAATAGGATTGTATAAACCTATTCCTTTTCCAACACTCCCCCTCAAGCTAGTGCATACAATTCATGCACCTGAACTTGTTACAAATGTAATTATCACGAGAACTGCTGAGGGGCTTGGTGAGATATCTGCAAGTTGATCAATGGACTTCACAAAAAATTGACGATCAATCCTAATGTGCTTGTCTTCTCATTAAATACTGGATTTGATGCATAATATCAGTAAAAATAGAGATAAAATTCTAGTATTGAACTTCCCAAACCGAACCTGCAAAGACTGCTTTAGACCATAGAATGACTCACTTATACAAGTCTACTAAATTCCCTCCGAGTAACAAAGTGCTCAAAACCTTGTATAAAGTATATAGATCATGTTGGAATCAATTGATGAGTTGATATTAAAACAAGTTACCGATAAATTGGCTTGAACATGCTCATATATCATAGTATTAGATTTGATTGCTAAAAGTGGCCACAATCTAAGAAATAAAATTATATAGGCAGAGTCAGAATGATGTCACAACCGAACTAGAAAATAGAAATTAAATAGGATAGTTCGAATTGATGGAATGATCCCATTGAAAAAGAAAAATAATATGGGTAGGGTTGGAATGATGGCATAACCCTACGCAAATCAGATCTAAGGAGTCACCGGAAAGACGAATGGAACTATGCAAATCAAATCCGAGTCACTGAAAAGACACATGATGTTATGCAACTCAGATATGAGAAAATAGTTCGAAAAAATTCACGGTACTGCACAAATTAAATATGAAAAGTAGTTCAGGAGATGCACGGTGCTACGCAAATCAGATATGCAAAAAAAAACATAGTCATCCAAAAGATGGCACGGTGCTACACAAATTATATATGAAAAAGTAGTACTTGAATGATGACACAGTGGTACACAAACTAAATATGAAAAGTAGTCACCGAAATGATAGCACGGTGCTACACAAATTAAATATGAAAAAGTAGTCACCGGAATGATGGCACGGTGCTACACAAATTAAATATGACAAAAGTAGTCACCGAAATGATGGCATGGTGCTACACAAATTAAATATGAAAAAAGTAGTCACTGGAATGATAGTGCGGTGTTACACAAATTAGATGTGAAAAAATAGTCACCAGAAAGATACACAGTGACTCAATTTTTATTTTTTTTGCTAACATAATCATTGGCCGGAGGAGCGGCATATGAGTAATAGCCGCCCGCCGGCAGCGGAAGCTCTTTGATTTTCCACCAAGATTGTAGGGGCTCTGAAACCATGTTAGAAATATAGGGAAAAATATTATTGAATTGTTGTTGTGTCTACATAATAACATAAAGACCCTATTTATAGACCATAGAATACAATCCTTTATCAAGTGGGATACTATTATCCTACTTAGTATTCCTATTCCTATTCTAATAGGATTGTATTAATCTATTTCTATTCCAATAGGATCGTATAAACCTATTCCTATTCTAACAACATTGAGACCCTATTTATAGATCCAATCCTTTACCAAGAAGGATACTATTTAGTAATCATATTCCTATTTTATAGAATTGTATAAACCTATTCCCATTCTAATAGGATTGTATAAACCTATTCCTATTCCAATAGGATTGTATAAACCTATTTCAATTCTAACAAGAATGACCCAATTTCTTTTTTAGTTTGTTTAAAAGAGAATGACACCTTTCCTTTTTTAGCAACACTTTAACTTCAACTTTCCACATGGCATGTTTAAGGCCACAAGATTAAAGGACATTTTTGGTACATTTTACATAATTTTAATTAAGAACCACAAAATTAAAAAGTCTTCTTACTTTTCTTAAACTCCGTTCCAAGTCAAAGTAGACCATTCTTTTTTAAACAAAGGGAGTAATTTTTTTGGGGTTGGGAAACGAGTGTGAGCATTAGGATTTATTTTGTAGATTTGAGTTTGTGCTAGGGCTTGTTTGTGATTTTGGTTTGGATTGTTTTCTGTTAAAAAATATTTGAAAACACCCAATCACTTTTTGAAACTCTAACGTGGGTTAAATAAATAGGTTAAAACTGGCTAAACACTATTTGTTATTCCTAATCGTGTTGGACTCCGAACTATTAAAAAGGAGCCTCTGACAGGCAAGGCCTTGCGTCACAGATGTTCGCGTAGAACAAAATGAGCTCCCTTTGTTATGGGAGAACAATGCAAAACCACGTTTCTAGCTTCTTTTGGTTGCAAAACCATATAGGCCAATGCTAACTAGTAAATGTCATACATATTTGTTTCTTGATTGGAGTGTAGTATTTCTTATTATAATGTGTTTGTTGCTTCTAAGGAGGACAATTCTTGCAGTTTGAACGTAGTCTCCTTATTTTTGCTTACCGAATCTTCTTTTGCTTTCCTTTAAATGGATTTTGCAATAATTTTCAAAAATTTTGTCAATTTTTCATAGATCTAGATGCTACATCAATCTTCTTGGAGTCTTGTTATCTTAAAGAGATCGTGATATCCAGCTGCATATTGATTTTTGATTTCTGACCAAGTATTTTAAAAGGATATGGTTCTTTGTTGTTTCTCTCTGATTTCTTGAAGTTTCTAATAGAAAATTTATTGCATACAGTGGTAGTCCTTATTAAGAAGTTTGTGATATTTTTGTTCCTGCACCACGAGAAGAATATTTGTCACGGGATGTATATTTTTCTCATAAGTATCAATTTTGGGTTGTACTAGCCCCAGAGCTTTGGTCAGTGATGATGACTCAAAACGGGATGTGAAGGGAATATGTCACAAGTTTGAAACCTATCATCGACAATGAGCTTGATATATAAGTGAGATCAGGGTAGAGAGGTGCCTCCAATTCTTAGAAGTTTCAAACTTGTAGGTCAATCAAAGCAGTCTAATTCACAAGATAATTTTATGTTATTTGAACAAAAATTGAGCCCTAATATGACTGAGACAAGTATTAGAGAAGGAAGGGACCCCAATCCTGCCATAAGGAATATGAATGTTGAAGAGAATAAGCTTATGGTGGCTGGTTGGTTCTTCATGTTACTTGTAGGATTGGGGCCGTCCTTCTCTTTATTGAGGATACTGTCGTGAGGAAGTAACTCTTGGTGAGAGCAATTGTACCCGACATTTTTATGCAACATAACTTGGGATTCATTGTAAATTTGGCTTTGTTTTCTCCACATTCCCTTCCCTGTAAGATGTAGCACCCCACTGCCTCCCTAGAAGAGGAGGGTGGGGGGAAGGAAACAAATTGTAGAAGGTTGGTTAGTGGAAGAGACAGTTAATTATGTATTTCAGTGTTATGTCCATCGTGTAGTTGTATAACTTACTTTTCTCTTAAGCTACTTTAAGAAAACCTAGATAAGATTTTAGTTTTGGAAATATCTTCCTCATCTATTGCTATTCCATTCCCTGCTGCTCTTTTTTGATTTACCTGTGAGTTATGTGATCAGGAAAAAGAGGTTCAGGCTTAGAGTTGCAAAGCTTCACTTTCTTCCCTGCAGCCAAAGAAACTTACTGGAGAGTGCATTCAGTAGAGAGATTCAATCTTCACAGAATATTCTGTGCAGAAGTGCTTCTGAAAAGCATGATCCGGAGTCCAGATTCCTCTGTCAGAGCAAAAGTTCAAGTCGATCAATTGGCTCTCCTGCTCATTGCACAGCTGGCGTGAACTGGAAATCCAAAAGCTCTGCGCAACCCCTTTCATCTAATATTTTACCTAGAGAGGATGATTTCCTGGATAACAAATTCAGTGCTTCAGTTAGATCCAACTATAAATCTGACTGTGAGGCAGGTTCAGGATGGGAGGATATGATTTTCAAACAATTGTAGCTGGCAGTTCTAGAGAGGATGCTTATTTAGGGTATCACTTGAACTTGATGACAGTTCAAATGTGATGCATG</genome_strand>
        <mrna_strand>CATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAG........................................................................................GGCAGATTTTGTAGACAAGATGTTGGTGCAACAGGGAATTAATGTATAAGCCTATCTCACACAGGAGTTGATTTTTGTTTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACGGCCCAAATTGATGGATAAAAGATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAGGTTCAGGCTTAGAGTTGCAAAGCTTCACTTTCTTCCCTGCAGCCAAAGAAACTTACTGGAGAGTGCATTCAGTAGAGAGATTCAATCTTCACAGAATATTCTGTGCAGAAGTGCTTCTGAAAAGCATGATCCGGAGTCCAGATTCCTCTGTCAGAGCAAAAGTTCAAGTCGATCAATTGGCTCTCCTGCTCATTGCACAGCTGGCGTGAACTGGAAATCCAAAAGCTCTGCGCAACCCCTTTCATCTAATATTTTACCTAGAGAGGATGATTTCCTGGATAACAAATTCAGTGCTTCAGTTAGATCCAACTATAAATCTGACTGTGAGGCAGGTTCAGGATGGGAGGATATGATTTTCAAACAATTGTAGCTGGCAGTTCTAGAGAGGATGCTTATTTAGGGTATCACTTGAACTTGATGACAGTTTCAATGTGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348786" ref_strand="+" ref_description="SGN-E348786 [cTOF-29-I14]">
      <seq>caacacactggagattgtgggaacattagatactgcccaggccaaattcgatgacatcttgaactctatgtcagtggatgcagcatgtgacaagattaaaagccttgccaagagtaaagaacttgactcttctttggtgctgctgataaatggtgcttgggcttcagcaaaagaatcctctacaatgagaaatgaggtaaaggagataatgcatcgtctatacaaagctacacagagtagtctaaggagcatggcaccaaaagaaataaagttgctcaagtacctgctgaacatcacagatcctgaagagcgattctcagcattggcaacagctttcagccctggtcatgaacatgatgccaaggatcctaatgctatatacacaagtccaaaagagttgcacaagtggatcaaaatcatgcttgatgcatacaacatgaataaagaagagactgaaattagagaagcgaagcagttggatcaacctatggtcattcagagactttccattctgaaggagacagttgaagcagaatatttggaaaaagaagctaatacagaaaaagattcacaaccagaagaaactgtgatatgacaacccagtcccccggcgtatcntgttgttatgctcaactgtctgttctcttctcaaaattagctttttttggtgatctgtgtatctctcagcatgcagtaggatggatgggctggttgcaatagtgaagcaattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0073P13-KF91y/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0073P13.2" temp_strand="+" temp_description="C02HBa0073P13.2  AC215377.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0073P13 sequenced_by:kribb upload_account_name:korea">
        <position start="128474" stop="131009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128774" g_stop="128969" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128970" i_stop="130308" i_length="1339">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130309" g_stop="130496" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="384" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130497" i_stop="130572" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130573" g_stop="130919" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="734" r_length="350" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0073P13.2" gen_strand="+" ref_id="SGN-E348786" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0073P13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128774" e_stop="128969"/>
          <exon e_start="130309" e_stop="130496"/>
          <exon e_start="130573" e_stop="130919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACACTGGAGATTGTGGGAACATTAGATACTGCCCAGGCCAAATTCGATGACATCTTGAACTCTATGTCAGTGGATGCAGCATGTGACAAGATTAAAAGCCTTGCCAAGAGTAAAGAACTTGACTCTTCTTTGGTGCTGCTGATAAATGGTGCTTGGGCTTCAGCAAAAGAATCCTCTACAATGAGAAATGAGGTACGGACATTTGTGGTCCATTTGATTCACAAAGACACGAGCACAAAGATTTTTCCGTTGATCTATTTCTTGAAGAGAAATGCTGATTTTCATCATATATGGATCTTGACTGATTTATTATCCTAACCATTTTATGGTATGATTATATTCGGTTTAAACACTAGGAGATTCTTGAATTGCTTTTTCTGTCATTGTGATGTTAAATAAGTAGCTTCAGATCATGGTCTTTGATATTGGAACATATGAATTGGTGGATTTGTCCTTGTGGACTATAGGGGTGTTAATTTTTGTTATAAAAGCATAGCATATTCAAACTTAAGTTGGGTGGGTTGGGTTATAGGTCAGTTGGGTCACGTTATGTTTATTGACTCAAAGTCTTCTTTGACTCATCCAAGCCTGACAAAATCCAACCCATGTTTGACTCATGATATTGTTGATGATCCCAAACTTAAGTTGGACTATGACTAGTTTCTAAACCCGTTTTAATCCAAGCAAACATTGGATCCTGACGATGGATGTACAGTAGCTTATATTCTTATATGTTGAATAGTAATACTCAATTCTGTTTTGATTTATGACACACTTTCCATGTGCTATATTCCAAACATTTGACACCAATATGATGTGCGTGTCAAAATTCTATGCCAGTGACGCAGCATACTTCGTTGGGGAAGGTTTATGAGCACTTGTAGCTCATATACAAGAAAAAAATTTAGCAGTATAAACGTTGGAGGCGAAGAGTGTTGCTATATTGTCAAGAAAGTTTAGAACTTCATCCCCGAAGCTACTCATAATTGAAGGCCATTATATTTTTCTCAATTTTCTTAAATCCATGTCCTGATCTTTTTCTTCTTACAATTTTATTTGAAGGGGGCGGTAGGGAGGACTCAAATATAACTGTAAAACTGGAAGTTTCTTATTTGTAATGAAACGAATACACTGAACTCAACAACAACATACCCAATGTAACCTCACAAAGTGGGTCTAGAGAGGGTAGAGTATATGCTGACTTTACCTGGAAATGAAACAAAAAGAGTCGGATGAAATTATGTTGTAATTAACTTTTGTTCACCACGTTTGCACAAATAGTTTGCAGAGTCCTCTTATCATATTATCCTGGAAATGTTAGCAGTAGCTCTATTCTAGATGTTCTTCTGTTTTCCTCATTTTCTTTTAACTATATATGCCAATGTGACTTCAGTAGTTTAAATTTAAATCATATCTGTCCCAACTGTTGATTACGTTCTATCTTGTGCTCGAATTTCTCTCTCTGATGGAATCTTGTATTTAGTTGAAGTGCCAGATAGTTTATTGAGCTGATGCTGGCATATGGGTGTAGGTAAAGGAGATAATGCATCGTCTATACAAAGCTACACAGAGTAGTCTAAGGAGCATGGCACCAAAAGAAATAAAGTTGCTCAAGTACCTGCTGAACATCACAGATCCTGAAGAGCGATTCTCAGCATTGGCAACAGCTTTCAGCCCTGGTCATGAACATGATGCCAAGGATCCTAATGCTATATACACGTAAGAGCTTAGTGCTTTCGTGCATTTATTAAAAGACTCAAAAGTGAAATCTTATATGCTTTCTTGTGTGGAGCAGAAGTCCAAAAGAGTTGCACAAGTGGATCAAAATCATGCTTGATGCATACAACATGAATAAAGAAGAGACTGAAATTAGAGAAGCGAAGCAGTTGGATCAACCTATGGTCATTCAGAGACTTTCCATTCTGAAGGAGACAGTTGAAGCAGAATATTTGGAAAAAGAAGCTAATACAGAAAAAGATTCACAACCAGAAGAAACTGTGATATGACAACCCAGTCCACCGGCGTATC-TGTTGTTATGCTC-ACTGTCTGTTCTCTTCTCAAAATTAGCTTTTTTTGGTGATCTGTGTATCTCTCAGCATGCAGTAGGATGGAT-GGCTGGTTGCAATAGTGAAGCAATTATGT</genome_strand>
        <mrna_strand>CAACACACTGGAGATTGTGGGAACATTAGATACTGCCCAGGCCAAATTCGATGACATCTTGAACTCTATGTCAGTGGATGCAGCATGTGACAAGATTAAAAGCCTTGCCAAGAGTAAAGAACTTGACTCTTCTTTGGTGCTGCTGATAAATGGTGCTTGGGCTTCAGCAAAAGAATCCTCTACAATGAGAAATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGAGATAATGCATCGTCTATACAAAGCTACACAGAGTAGTCTAAGGAGCATGGCACCAAAAGAAATAAAGTTGCTCAAGTACCTGCTGAACATCACAGATCCTGAAGAGCGATTCTCAGCATTGGCAACAGCTTTCAGCCCTGGTCATGAACATGATGCCAAGGATCCTAATGCTATATACAC............................................................................AAGTCCAAAAGAGTTGCACAAGTGGATCAAAATCATGCTTGATGCATACAACATGAATAAAGAAGAGACTGAAATTAGAGAAGCGAAGCAGTTGGATCAACCTATGGTCATTCAGAGACTTTCCATTCTGAAGGAGACAGTTGAAGCAGAATATTTGGAAAAAGAAGCTAATACAGAAAAAGATTCACAACCAGAAGAAACTGTGATATGACAACCCAGTCCCCCGGCGTATCNTGTTGTTATGCTCAACTGTCTGTTCTCTTCTCAAAATTAGCTTTTTTTGGTGATCTGTGTATCTCTCAGCATGCAGTAGGATGGATGGGCTGGTTGCAATAGTGAAGCAATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>201</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="381" PGL_stop="1414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="381" e_stop="483"/>
            <exon e_start="711" e_stop="968"/>
            <exon e_start="1060" e_stop="1235"/>
            <exon e_start="1353" e_stop="1414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="381" e_stop="483" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="484" i_stop="710" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="711" e_stop="968" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.818" acc_prob="0.989">
            <gDNA_intron_boundary i_start="969" i_stop="1059" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1060" e_stop="1235" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.966">
            <gDNA_intron_boundary i_start="1236" i_stop="1352" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1353" e_stop="1414" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="381" stop="483"/>
              <exon start="711" stop="968"/>
              <exon start="1060" stop="1235"/>
              <exon start="1353" stop="1414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAAATTCAATCACTTGAGAGGAGTATTTCTCCTGTGACTCATTCTTTAATTAGGTTTACCTATCCTGAGATTGCTTCTGCTACTAGGAATTTTTCAAAAG : GTAGAGTTTTGGGAAGAGGAGCATTGAGCTATGTTTTCAGAGGAAGAGTTGGATTTATGAGGACTACTGTTGCGATTAAGCGGTTAGATAGGGAAGACAAGGAGTCTCCAAAGGCATTTTGTAGGGAGTTAATGATTGCTAGTTCTCTTCACAACCCATACATTGTTCCTCTGGTGGGTTTTTGTATTGATCCAGAGGAGGGTTTCTTTTTGGTATACAAGTATGTATCTGGTGGAAGTTTAGAGCGGTATTTACATG : ATAAGAAGAAGAGGGGAGTGAAGGGTGGTCCAGTACTTCCATGGTCTACGCGGTATAAGGTGGCTGTAGGCATTGCTGATTCAATCGGGTACTTGCATTATGGCACTGAGAGGTGTGTTGTTCACAGGGACATCAAACCCTCCAACATTCTTCTCTCATCCAAAAAGACGCCCAAG : TTGTGTGACTTTGGTTTAGCTACATGGACTCCTGCACCTTCTGTACCTTTCCTTTGTAAAAC</gDNA_template>
            <first_frame> R  K  I  Q  S  L  E  R  S  I  S  P  V  T  H  S  L  I  R  F  T  Y  P  E  I  A  S  A  T  R  N  F  S  K   : G  R  V  L  G  R  G  A  L  S  Y  V  F  R  G  R  V  G  F  M  R  T  T  V  A  I  K  R  L  D  R  E  D  K  E  S  P  K  A  F  C  R  E  L  M  I  A  S  S  L  H  N  P  Y  I  V  P  L  V  G  F  C  I  D  P  E  E  G  F  F  L  V  Y  K  Y  V  S  G  G  S  L  E  R  Y  L  H   : D  K  K  K  R  G  V  K  G  G  P  V  L  P  W  S  T  R  Y  K  V  A  V  G  I  A  D  S  I  G  Y  L  H  Y  G  T  E  R  C  V  V  H  R  D  I  K  P  S  N  I  L  L  S  S  K  K  T  P  K  :  L  C  D  F  G  L  A  T  W  T  P  A  P  S  V  P  F  L  C  K   </first_frame>
            <second_frame>  G  K  F  N  H  L  R  G  V  F  L  L  *  L  I  L  *  L  G  L  P  I  L  R  L  L  L  L  L  G  I  F  Q  K  :  V  E  F  W  E  E  E  H  *  A  M  F  S  E  E  E  L  D  L  *  G  L  L  L  R  L  S  G  *  I  G  K  T  R  S  L  Q  R  H  F  V  G  S  *  *  L  L  V  L  F  T  T  H  T  L  F  L  W  W  V  F  V  L  I  Q  R  R  V  S  F  W  Y  T  S  M  Y  L  V  E  V  *  S  G  I  Y  M  :  I  R  R  R  G  E  *  R  V  V  Q  Y  F  H  G  L  R  G  I  R  W  L  *  A  L  L  I  Q  S  G  T  C  I  M  A  L  R  G  V  L  F  T  G  T  S  N  P  P  T  F  F  S  H  P  K  R  R  P  S :   C  V  T  L  V  *  L  H  G  L  L  H  L  L  Y  L  S  F  V  K  </second_frame>
            <third_frame>   E  N  S  I  T  *  E  E  Y  F  S  C  D  S  F  F  N  *  V  Y  L  S  *  D  C  F  C  Y  *  E  F  F  K  R :   *  S  F  G  K  R  S  I  E  L  C  F  Q  R  K  S  W  I  Y  E  D  Y  C  C  D  *  A  V  R  *  G  R  Q  G  V  S  K  G  I  L  *  G  V  N  D  C  *  F  S  S  Q  P  I  H  C  S  S  G  G  F  L  Y  *  S  R  G  G  F  L  F  G  I  Q  V  C  I  W  W  K  F  R  A  V  F  T  * :   *  E  E  E  G  S  E  G  W  S  S  T  S  M  V  Y  A  V  *  G  G  C  R  H  C  *  F  N  R  V  L  A  L  W  H  *  E  V  C  C  S  Q  G  H  Q  T  L  Q  H  S  S  L  I  Q  K  D  A  Q   : V  V  *  L  W  F  S  Y  M  D  S  C  T  F  C  T  F  P  L  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="381" stop="483"/>
                    <exon start="711" stop="968"/>
                    <exon start="1060" stop="1235"/>
                    <exon start="1353" stop="1412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKIQSLERSISPVTHSLIRFTYPEIASATRNFSKGRVLGRGALSYVFRGRVGFMRTTVAIKRLDREDKESPKAFCRELMIASSLHNPYIVPLVGFCIDPEEGFFLVYKYVSGGSLERYLHDKKKRGVKGGPVLPWSTRYKVAVGIADSIGYLHYGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTPAPSVPFLCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4143" PGL_stop="3654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4143" e_stop="3654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="4143" e_stop="3654" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4143" stop="3654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4143" stop="3654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4142" stop="3654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAAAAACTCAGACCAACTTTGCCTACATTATAACCATCGCAAAAGAAAAAGGCAAAGAAGAAATCAAAGAATGGCTGAAGATCCACAAGACGTAGCCGATCGCGAACTAGTCTTCAAGCGTTTTGATTTAAATGGTGATGGGCAAATTTCTTCAGCAGAACTTGGAGAGGCCTTGAAGATGCTAGGCTCTGTAACCTCTGAAGAAGTCCAGTATATGATGGCTGAACTTGATACTGATGGGGATGGCTTCATTTCTTTTAAAGAATTCGAAGAATTTGCTCGAGCCAATAGAGGTTTGATCAAGGATGTTGCTAAAGTATTCTAGCTTTCTTGATGCACAAACTTAACCATTAGAAACCGATTTTAGGTGGTTTTTGCAGGTTCAAACTGAATCCATTGCTTTCAGCTCGAACTATGTATACGAATGCAACATATGTTTAAAATGTATACATATAATAAAATCATACTCATTTTGAAATCATCGA</gDNA_template>
            <first_frame> K  N  K  N  S  D  Q  L  C  L  H  Y  N  H  R  K  R  K  R  Q  R  R  N  Q  R  M  A  E  D  P  Q  D  V  A  D  R  E  L  V  F  K  R  F  D  L  N  G  D  G  Q  I  S  S  A  E  L  G  E  A  L  K  M  L  G  S  V  T  S  E  E  V  Q  Y  M  M  A  E  L  D  T  D  G  D  G  F  I  S  F  K  E  F  E  E  F  A  R  A  N  R  G  L  I  K  D  V  A  K  V  F  *  L  S  *  C  T  N  L  T  I  R  N  R  F  *  V  V  F  A  G  S  N  *  I  H  C  F  Q  L  E  L  C  I  R  M  Q  H  M  F  K  M  Y  T  Y  N  K  I  I  L  I  L  K  S  S  </first_frame>
            <second_frame>  K  T  K  T  Q  T  N  F  A  Y  I  I  T  I  A  K  E  K  G  K  E  E  I  K  E  W  L  K  I  H  K  T  *  P  I  A  N  *  S  S  S  V  L  I  *  M  V  M  G  K  F  L  Q  Q  N  L  E  R  P  *  R  C  *  A  L  *  P  L  K  K  S  S  I  *  W  L  N  L  I  L  M  G  M  A  S  F  L  L  K  N  S  K  N  L  L  E  P  I  E  V  *  S  R  M  L  L  K  Y  S  S  F  L  D  A  Q  T  *  P  L  E  T  D  F  R  W  F  L  Q  V  Q  T  E  S  I  A  F  S  S  N  Y  V  Y  E  C  N  I  C  L  K  C  I  H  I  I  K  S  Y  S  F  *  N  H  R </second_frame>
            <third_frame>   K  Q  K  L  R  P  T  L  P  T  L  *  P  S  Q  K  K  K  A  K  K  K  S  K  N  G  *  R  S  T  R  R  S  R  S  R  T  S  L  Q  A  F  *  F  K  W  *  W  A  N  F  F  S  R  T  W  R  G  L  E  D  A  R  L  C  N  L  *  R  S  P  V  Y  D  G  *  T  *  Y  *  W  G  W  L  H  F  F  *  R  I  R  R  I  C  S  S  Q  *  R  F  D  Q  G  C  C  *  S  I  L  A  F  L  M  H  K  L  N  H  *  K  P  I  L  G  G  F  C  R  F  K  L  N  P  L  L  S  A  R  T  M  Y  T  N  A  T  Y  V  *  N  V  Y  I  *  *  N  H  T  H  F  E  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4143" stop="3814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNSDQLCLHYNHRKRKRQRRNQRMAEDPQDVADRELVFKRFDLNGDGQISSAELGEALKMLGSVTSEEVQYMMAELDTDGDGFISFKEFEEFARANRGLIKDVAKVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9225" PGL_stop="4438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9225" e_stop="8716"/>
            <exon e_start="8592" e_stop="8381"/>
            <exon e_start="7552" e_stop="7340"/>
            <exon e_start="6811" e_stop="6614"/>
            <exon e_start="6471" e_stop="6334"/>
            <exon e_start="5610" e_stop="5494"/>
            <exon e_start="4805" e_stop="4438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9225" e_stop="8716" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8715" i_stop="8593" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8592" e_stop="8381" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7552" e_stop="7340" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.894">
            <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6811" e_stop="6614" e_length="198"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6471" e_stop="6334" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.928">
            <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5610" e_stop="5494" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.941">
            <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4805" e_stop="4438" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9225" stop="8768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9204" stop="8716"/>
              <exon start="8592" stop="8508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9204" stop="8716"/>
              <exon start="8592" stop="8542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9131" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9131" stop="8716"/>
              <exon start="8592" stop="8422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9131" stop="8716"/>
              <exon start="8592" stop="8459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9131" stop="8716"/>
              <exon start="8592" stop="8526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9130" stop="8716"/>
              <exon start="8592" stop="8459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9126" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9126" stop="8716"/>
              <exon start="8592" stop="8426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9120" stop="8716"/>
              <exon start="8592" stop="8465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9116" stop="8716"/>
              <exon start="8592" stop="8459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9107" stop="8716"/>
              <exon start="8592" stop="8386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9105" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7340"/>
              <exon start="6811" stop="6614"/>
              <exon start="6471" stop="6334"/>
              <exon start="5610" stop="5494"/>
              <exon start="4805" stop="4596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9102" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9099" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9092" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9091" stop="8716"/>
              <exon start="8592" stop="8505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9080" stop="8716"/>
              <exon start="8592" stop="8409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9080" stop="8719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9080" stop="8786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9076" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9076" stop="8716"/>
              <exon start="8592" stop="8459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9076" stop="8716"/>
              <exon start="8592" stop="8459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9076" stop="8716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9075" stop="8716"/>
              <exon start="8592" stop="8386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9071" stop="8716"/>
              <exon start="8592" stop="8406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9070" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8716"/>
              <exon start="8592" stop="8443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8716"/>
              <exon start="8592" stop="8465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9062" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9060" stop="8716"/>
              <exon start="8592" stop="8449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9054" stop="8716"/>
              <exon start="8592" stop="8427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9048" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9026" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7340"/>
              <exon start="6811" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9003" stop="8716"/>
              <exon start="8592" stop="8539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8995" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7340"/>
              <exon start="6811" stop="6762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395274" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8992" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8986" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8986" stop="8716"/>
              <exon start="8592" stop="8412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8984" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8960" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8960" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8960" stop="8716"/>
              <exon start="8592" stop="8381"/>
              <exon start="7552" stop="7472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8960" stop="8716"/>
              <exon start="8592" stop="8456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8951" stop="8716"/>
              <exon start="8592" stop="8473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8523" stop="8381"/>
              <exon start="7552" stop="7340"/>
              <exon start="6811" stop="6614"/>
              <exon start="6471" stop="6334"/>
              <exon start="5610" stop="5528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7431" stop="7340"/>
              <exon start="6811" stop="6614"/>
              <exon start="6471" stop="6464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="6614"/>
              <exon start="6471" stop="6334"/>
              <exon start="5610" stop="5494"/>
              <exon start="4805" stop="4438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6371" stop="6334"/>
              <exon start="5610" stop="5494"/>
              <exon start="4805" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5548" stop="5494"/>
              <exon start="4805" stop="4483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5538" stop="5494"/>
              <exon start="4805" stop="4438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5513" stop="5494"/>
              <exon start="4805" stop="4483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4783" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267799" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAGCAAGTGGGTAAATCATGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG : GAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG : GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAG : GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG : ATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG : GATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG : GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</gDNA_template>
            <first_frame> N  K  Q  V  G  K  S  *  F  L  S  D  K  *  Q  G  *  L  E  V  V  V  G  *  S  L  G  H  P  T  K  Q  N  L  Y  V  S  Q  F  R  F  I  D  F  S  A  A  T  I  F  P  N  R  K  N  C  F  K  I  R  V  Y  C  L  K  I  T  S  F  T  T  I  A  P  I  P  S  P  N  F  H  F  S  C  *  N  F  D  A  *  C  N  C  I  L  G  F  N  C  E  I  R  V  S  Q  I  R  S  V  P  L  V  F  L  L  S  N  K  W  L  F  M  L  L  L  S  P  S  L  E  F  L  L  Q  V  N  L  P  E  A  L  C  F  Q  S  F  L  F  L  E  D  A  L  S  K  Q  L  P  S  I  R  T  A  F  L  D  V  K  S  K  :  E  E  H  C  Q  V  T  M  G  *  W  R  R  M  N  L  L  L  L  C  A  L  E  K  C  S  L  I  L  F  R  L  Q  V  G  F  H  W  L  K  L  L  H  L  K  R  L  L  V  V  H  Q  L  M  L  L  L  V  F  P  V  L  V  V  H  Q  L  S  L  A  R :   L  V  K  T  N  L  V  T  C  L  L  R  F  *  R  R  T  M  S  T  V  M  V  C  D  L  I  Q  V  L  A  L  L  *  H  L  *  H  *  E  R  M  E  N  V  N  L  C  S  I  V  T  Q  V  L  I  C  C  F  K  R  M  N  L  I  *  S  *  S  G  R :   Q  K  F  F  I  M  V  P  *  V  *  L  R  S  H  A  N  Q  P  I  L  Q  L  Q  K  L  Q  R  M  L  V  *  S  Y  P  M  I  P  I  *  G  F  H  C  G  H  L  Q  K  V  L  E  K  E  S  L  A  Y  G  I  L  L  I  *  L  R :   *  V  K  K  R  F  R  F  *  H  K  E  K  I  L  M  M  I  M  L  S  V  S  C  T  I  Q  T  S  S  Y  S  S  S  Q  K  V  Q  K  V  A  D  I  T  P  R :   I  S  V  D  E  L  R  V  *  R  W  T  L  W  T  P  Q  V  L  E  M  L  L  *  P  E  Y  C  H  S  *  H  L  M  S  L  C  F  R :   M  R  A  S  F  E  M  P  L  V  L  L  M  P  V  V  H  *  P  *  W  R  E  E  Q  F  Q  L  C  L  Q  K  K  *  C  *  T  P  C  S  S  Q  L  H  N  I  H  P  T  Y  *  S  V  A  I  *  M  H  L  Q  K  D  L  H  V  L  L  A  *  F  L  *  G  K  R  I  L  Y  N  H  I  S  Q  *  S  R  I  I  S  D  K  Y  V  V  V  H  N  P  H  Y  *  A  H  V  F  I  Q  D  Q  C  S  I  L  L  G  N  A  L  V  *  F  S  </first_frame>
            <second_frame>  I  S  K  W  V  N  H  D  F  C  L  T  S  D  R  D  N  *  R  S  S  S  A  S  L  W  A  I  Q  Q  N  K  T  C  M  L  A  N  F  D  S  L  I  S  P  L  L  L  F  S  P  T  E  R  I  A  S  K  L  G  F  I  A  *  K  L  L  V  L  Q  R  L  L  Q  Y  L  L  L  I  S  I  L  V  A  E  I  L  T  P  D  V  T  V  F  *  V  L  I  V  K  Y  E  F  L  R  S  D  Q  F  L  W  F  F  Y  F  L  I  N  G  S  S  C  Y  C  F  L  L  H  W  S  F  Y  F  K  *  I  F  Q  K  R  F  A  F  S  L  S  S  S  *  K  M  H  C  Q  S  N  F  P  V  S  A  Q  L  S  S  M  *  N  P  R :   K  S  I  A  K  *  Q  W  A  S  G  E  G  *  I  F  S  C  C  V  L  W  R  N  A  H  *  F  C  S  D  Y  K  W  A  F  I  G  *  S  S  C  I  *  K  G  S  W  W  C  T  S  *  C  C  C  W  Y  F  P  S  W  W  F  I  S  F  H  W  Q   : G  W  *  R  R  I  W  L  H  A  C  *  D  F  E  G  E  Q  C  Q  Q  *  W  Y  A  I  *  S  R  C  S  H  C  F  S  I  C  N  T  E  K  G  W  R  T  *  I  Y  V  L  S  *  P  K  C  *  Y  V  A  S  R  G  *  T  *  F  R  V  D  Q  E   : G  K  S  F  S  L  W  F  H  K  S  D  Y  G  A  M  Q  I  S  P  Y  C  S  C  K  S  C  K  G  C  W  C  D  L  I  L  *  S  Q  F  E  A  S  I  V  A  I  C  R  K  C  *  R  R  N  P  *  H  M  E  Y  C  *  Y  N  *   : D  K  *  R  R  D  F  V  F  D  T  R  R  R  S  L  *  *  *  C  C  P  *  V  V  P  S  K  P  Q  V  T  P  R  H  R  R  S  R  R  L  P  I  L  H  Q   : G  F  Q  W  T  S  *  G  Y  K  G  G  R  C  G  H  H  R  C  W  R  C  F  C  S  R  N  I  V  T  A  S  I  *  C  L  S  A  S   : G  *  G  Q  A  S  R  C  P  *  F  C  *  C  L  W  C  I  D  R  D  G  E  R  S  N  S  S  F  A  Y  K  R  S  S  V  E  R  L  A  Q  V  S  C  I  I  S  I  R  P  I  N  R  L  P  F  K  C  T  C  K  K  I  S  M  C  S  L  H  S  S  C  R  V  K  E  Y  C  I  T  T  L  A  N  N  R  E  *  F  L  I  N  M  W  *  F  I  T  H  I  I  K  H  M  Y  L  F  K  I  N  V  Q  F  F  W  V  M  H  W  F  D  S  V </second_frame>
            <third_frame>   *  A  S  G  *  I  M  I  F  V  *  Q  V  T  G  I  T  R  G  R  R  R  L  V  F  G  P  S  N  K  T  K  L  V  C  *  P  I  S  I  H  *  F  L  R  C  Y  Y  F  P  Q  Q  K  E  L  L  Q  N  *  G  L  L  P  E  N  Y  *  F  Y  N  D  C  S  N  T  F  S  *  F  P  F  *  L  L  K  F  *  R  L  M  *  L  Y  F  R  F  *  L  *  N  T  S  F  S  D  Q  I  S  S  S  G  F  F  T  F  *  *  M  A  L  H  A  T  A  F  S  F  T  G  V  S  T  S  S  K  S  S  R  S  A  L  L  S  V  F  P  L  P  R  R  C  T  V  K  A  T  S  Q  Y  P  H  S  F  P  R  C  K  I  Q   : G  R  A  L  P  S  D  N  G  L  V  E  K  D  E  S  S  L  V  V  C  F  G  E  M  L  I  D  F  V  P  T  T  S  G  L  S  L  A  E  A  P  A  F  K  K  A  P  G  G  A  P  A  N  V  A  V  G  I  S  R  L  G  G  S  S  A  F  I  G  K  :  V  G  E  D  E  F  G  Y  M  L  A  E  I  L  K  E  N  N  V  N  S  D  G  M  R  F  D  P  G  A  R  T  A  L  A  F  V  T  L  R  K  D  G  E  R  E  F  M  F  Y  R  N  P  S  A  D  M  L  L  Q  E  D  E  L  D  L  E  L  I  R  K  :  A  K  V  F  H  Y  G  S  I  S  L  I  T  E  P  C  K  S  A  H  I  A  A  A  K  A  A  K  D  A  G  V  I  L  S  Y  D  P  N  L  R  L  P  L  W  P  S  A  E  S  A  R  E  G  I  L  S  I  W  N  T  A  D  I  I  K  :  I  S  E  E  E  I  S  F  L  T  Q  G  E  D  P  Y  D  D  N  V  V  R  K  L  Y  H  P  N  L  K  L  L  L  V  T  E  G  P  E  G  C  R  Y  Y  T  K  :  D  F  S  G  R  V  K  G  I  K  V  D  A  V  D  T  T  G  A  G  D  A  F  V  A  G  I  L  S  Q  L  A  S  D  V  S  L  L  Q  :  D  E  G  K  L  R  D  A  L  S  F  A  N  A  C  G  A  L  T  V  M  E  R  G  A  I  P  A  L  P  T  K  E  V  V  L  N  A  L  L  K  S  V  A  *  Y  P  S  D  L  L  I  G  C  H  L  N  A  L  A  K  R  S  P  C  A  P  C  I  V  L  V  G  *  K  N  I  V  *  P  H  *  P  I  I  E  N  N  F  *  *  I  C  G  S  S  *  P  T  L  L  S  T  C  I  Y  S  R  S  M  F  N  S  F  G  *  C  I  G  L  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8872" stop="8716"/>
                    <exon start="8592" stop="8381"/>
                    <exon start="7552" stop="7340"/>
                    <exon start="6811" stop="6614"/>
                    <exon start="6471" stop="6334"/>
                    <exon start="5610" stop="5494"/>
                    <exon start="4805" stop="4671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MALHATAFSFTGVSTSSKSSRSALLSVFPLPRRCTVKATSQYPHSFPRCKIQGRALPSDNGLVEKDESSLVVCFGEMLIDFVPTTSGLSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGEDEFGYMLAEILKENNVNSDGMRFDPGARTALAFVTLRKDGEREFMFYRNPSADMLLQEDELDLELIRKAKVFHYGSISLITEPCKSAHIAAAKAAKDAGVILSYDPNLRLPLWPSAESAREGILSIWNTADIIKISEEEISFLTQGEDPYDDNVVRKLYHPNLKLLLVTEGPEGCRYYTKDFSGRVKGIKVDAVDTTGAGDAFVAGILSQLASDVSLLQDEGKLRDALSFANACGALTVMERGAIPALPTKEVVLNALLKSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9225" e_stop="8716"/>
            <exon e_start="8598" e_stop="8381"/>
            <exon e_start="7552" e_stop="7340"/>
            <exon e_start="6811" e_stop="6614"/>
            <exon e_start="6471" e_stop="6334"/>
            <exon e_start="5610" e_stop="5494"/>
            <exon e_start="4805" e_stop="4438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.995" acc_prob="0.894" e_score="0.991"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9225" e_stop="8716" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8715" i_stop="8599" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="8598" e_stop="8381" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8380" i_stop="7553" i_length="828"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="7552" e_stop="7340" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.894">
            <gDNA_intron_boundary i_start="7339" i_stop="6812" i_length="528"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6811" e_stop="6614" e_length="198"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="6613" i_stop="6472" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6471" e_stop="6334" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.928">
            <gDNA_intron_boundary i_start="6333" i_stop="5611" i_length="723"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5610" e_stop="5494" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.941">
            <gDNA_intron_boundary i_start="5493" i_stop="4806" i_length="688"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4805" e_stop="4438" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9225" stop="8768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9080" stop="8719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9080" stop="8786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9076" stop="8716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9069" stop="8716"/>
              <exon start="8598" stop="8381"/>
              <exon start="7552" stop="7517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8523" stop="8381"/>
              <exon start="7552" stop="7340"/>
              <exon start="6811" stop="6614"/>
              <exon start="6471" stop="6334"/>
              <exon start="5610" stop="5528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7431" stop="7340"/>
              <exon start="6811" stop="6614"/>
              <exon start="6471" stop="6464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="6614"/>
              <exon start="6471" stop="6334"/>
              <exon start="5610" stop="5494"/>
              <exon start="4805" stop="4438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6371" stop="6334"/>
              <exon start="5610" stop="5494"/>
              <exon start="4805" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397684" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5548" stop="5494"/>
              <exon start="4805" stop="4483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5538" stop="5494"/>
              <exon start="4805" stop="4438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5513" stop="5494"/>
              <exon start="4805" stop="4483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4783" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267799" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAGCAAGTGGGTAAATCATGATTTTTGTCTGACAAGTGACAGGGATAACTAGAGGTCGTCGTCGGCTAGTCTTTGGGCCATCCAACAAAACAAAACTTGTATGTTAGCCAATTTCGATTCATTGATTTCTCCGCTGCTACTATTTTCCCCAACAGAAAGAATTGCTTCAAAATTAGGGTTTATTGCCTGAAAATTACTAGTTTTACAACGATTGCTCCAATACCTTCTCCTAATTTCCATTTTAGTTGCTGAAATTTTGACGCCTGATGTAACTGTATTTTAGGTTTTAATTGTGAAATACGAGTTTCTCAGATCAGATCAGTTCCTCTGGTTTTTTTACTTTCTAATAAATGGCTCTTCATGCTACTGCTTTCTCCTTCACTGGAGTTTCTACTTCAAGTAAATCTTCCAGAAGCGCTTTGCTTTCAGTCTTTCCTCTTCCTAGAAGATGCACTGTCAAAGCAACTTCCCAGTATCCGCACAGCTTTCCTCGATGTAAAATCCAAG : TTTAAGGAAGAGCATTGCCAAGTGACAATGGGCTAGTGGAGAAGGATGAATCTTCTCTTGTTGTGTGCTTTGGAGAAATGCTCATTGATTTTGTTCCGACTACAAGTGGGCTTTCATTGGCTGAAGCTCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCAGCTAATGTTGCTGTTGGTATTTCCCGTCTTGGTGGTTCATCAGCTTTCATTGGCAAG : GTTGGTGAAGACGAATTTGGTTACATGCTTGCTGAGATTTTGAAGGAGAACAATGTCAACAGTGATGGTATGCGATTTGATCCAGGTGCTCGCACTGCTTTAGCATTTGTAACACTGAGAAAGGATGGAGAACGTGAATTTATGTTCTATCGTAACCCAAGTGCTGATATGTTGCTTCAAGAGGATGAACTTGATTTAGAGTTGATCAGGAAG : GCAAAAGTTTTTCATTATGGTTCCATAAGTCTGATTACGGAGCCATGCAAATCAGCCCATATTGCAGCTGCAAAAGCTGCAAAGGATGCTGGTGTGATCTTATCCTATGATCCCAATTTGAGGCTTCCATTGTGGCCATCTGCAGAAAGTGCTAGAGAAGGAATCCTTAGCATATGGAATACTGCTGATATAATTAAG : ATAAGTGAAGAAGAGATTTCGTTTTTGACACAAGGAGAAGATCCTTATGATGATAATGTTGTCCGTAAGTTGTACCATCCAAACCTCAAGTTACTCCTCGTCACAGAAGGTCCAGAAGGTTGCCGATATTACACCAAG : GATTTCAGTGGACGAGTTAAGGGTATAAAGGTGGACGCTGTGGACACCACAGGTGCTGGAGATGCTTTTGTAGCCGGAATATTGTCACAGCTAGCATCTGATGTCTCTCTGCTTCAG : GATGAGGGCAAGCTTCGAGATGCCCTTAGTTTTGCTAATGCCTGTGGTGCATTGACCGTGATGGAGAGAGGAGCAATTCCAGCTTTGCCTACAAAAGAAGTAGTGTTGAACGCCTTGCTCAAGTCAGTTGCATAATATCCATCCGACCTATTAATCGGTTGCCATTTAAATGCACTTGCAAAAAGATCTCCATGTGCTCCTTGCATAGTTCTTGTAGGGTAAAAGAATATTGTATAACCACATTAGCCAATAATCGAGAATAATTTCTGATAAATATGTGGTAGTTCATAACCCACATTATTAAGCACATGTATTTATTCAAGATCAATGTTCAATTCTTTTGGGTAATGCATTGGTTTGATTCAGTC</gDNA_template>
            <first_frame> N  K  Q  V  G  K  S  *  F  L  S  D  K  *  Q  G  *  L  E  V  V  V  G  *  S  L  G  H  P  T  K  Q  N  L  Y  V  S  Q  F  R  F  I  D  F  S  A  A  T  I  F  P  N  R  K  N  C  F  K  I  R  V  Y  C  L  K  I  T  S  F  T  T  I  A  P  I  P  S  P  N  F  H  F  S  C  *  N  F  D  A  *  C  N  C  I  L  G  F  N  C  E  I  R  V  S  Q  I  R  S  V  P  L  V  F  L  L  S  N  K  W  L  F  M  L  L  L  S  P  S  L  E  F  L  L  Q  V  N  L  P  E  A  L  C  F  Q  S  F  L  F  L  E  D  A  L  S  K  Q  L  P  S  I  R  T  A  F  L  D  V  K  S  K  :  F  K  E  E  H  C  Q  V  T  M  G  *  W  R  R  M  N  L  L  L  L  C  A  L  E  K  C  S  L  I  L  F  R  L  Q  V  G  F  H  W  L  K  L  L  H  L  K  R  L  L  V  V  H  Q  L  M  L  L  L  V  F  P  V  L  V  V  H  Q  L  S  L  A  R :   L  V  K  T  N  L  V  T  C  L  L  R  F  *  R  R  T  M  S  T  V  M  V  C  D  L  I  Q  V  L  A  L  L  *  H  L  *  H  *  E  R  M  E  N  V  N  L  C  S  I  V  T  Q  V  L  I  C  C  F  K  R  M  N  L  I  *  S  *  S  G  R :   Q  K  F  F  I  M  V  P  *  V  *  L  R  S  H  A  N  Q  P  I  L  Q  L  Q  K  L  Q  R  M  L  V  *  S  Y  P  M  I  P  I  *  G  F  H  C  G  H  L  Q  K  V  L  E  K  E  S  L  A  Y  G  I  L  L  I  *  L  R :   *  V  K  K  R  F  R  F  *  H  K  E  K  I  L  M  M  I  M  L  S  V  S  C  T  I  Q  T  S  S  Y  S  S  S  Q  K  V  Q  K  V  A  D  I  T  P  R :   I  S  V  D  E  L  R  V  *  R  W  T  L  W  T  P  Q  V  L  E  M  L  L  *  P  E  Y  C  H  S  *  H  L  M  S  L  C  F  R :   M  R  A  S  F  E  M  P  L  V  L  L  M  P  V  V  H  *  P  *  W  R  E  E  Q  F  Q  L  C  L  Q  K  K  *  C  *  T  P  C  S  S  Q  L  H  N  I  H  P  T  Y  *  S  V  A  I  *  M  H  L  Q  K  D  L  H  V  L  L  A  *  F  L  *  G  K  R  I  L  Y  N  H  I  S  Q  *  S  R  I  I  S  D  K  Y  V  V  V  H  N  P  H  Y  *  A  H  V  F  I  Q  D  Q  C  S  I  L  L  G  N  A  L  V  *  F  S  </first_frame>
            <second_frame>  I  S  K  W  V  N  H  D  F  C  L  T  S  D  R  D  N  *  R  S  S  S  A  S  L  W  A  I  Q  Q  N  K  T  C  M  L  A  N  F  D  S  L  I  S  P  L  L  L  F  S  P  T  E  R  I  A  S  K  L  G  F  I  A  *  K  L  L  V  L  Q  R  L  L  Q  Y  L  L  L  I  S  I  L  V  A  E  I  L  T  P  D  V  T  V  F  *  V  L  I  V  K  Y  E  F  L  R  S  D  Q  F  L  W  F  F  Y  F  L  I  N  G  S  S  C  Y  C  F  L  L  H  W  S  F  Y  F  K  *  I  F  Q  K  R  F  A  F  S  L  S  S  S  *  K  M  H  C  Q  S  N  F  P  V  S  A  Q  L  S  S  M  *  N  P  S :   L  R  K  S  I  A  K  *  Q  W  A  S  G  E  G  *  I  F  S  C  C  V  L  W  R  N  A  H  *  F  C  S  D  Y  K  W  A  F  I  G  *  S  S  C  I  *  K  G  S  W  W  C  T  S  *  C  C  C  W  Y  F  P  S  W  W  F  I  S  F  H  W  Q   : G  W  *  R  R  I  W  L  H  A  C  *  D  F  E  G  E  Q  C  Q  Q  *  W  Y  A  I  *  S  R  C  S  H  C  F  S  I  C  N  T  E  K  G  W  R  T  *  I  Y  V  L  S  *  P  K  C  *  Y  V  A  S  R  G  *  T  *  F  R  V  D  Q  E   : G  K  S  F  S  L  W  F  H  K  S  D  Y  G  A  M  Q  I  S  P  Y  C  S  C  K  S  C  K  G  C  W  C  D  L  I  L  *  S  Q  F  E  A  S  I  V  A  I  C  R  K  C  *  R  R  N  P  *  H  M  E  Y  C  *  Y  N  *   : D  K  *  R  R  D  F  V  F  D  T  R  R  R  S  L  *  *  *  C  C  P  *  V  V  P  S  K  P  Q  V  T  P  R  H  R  R  S  R  R  L  P  I  L  H  Q   : G  F  Q  W  T  S  *  G  Y  K  G  G  R  C  G  H  H  R  C  W  R  C  F  C  S  R  N  I  V  T  A  S  I  *  C  L  S  A  S   : G  *  G  Q  A  S  R  C  P  *  F  C  *  C  L  W  C  I  D  R  D  G  E  R  S  N  S  S  F  A  Y  K  R  S  S  V  E  R  L  A  Q  V  S  C  I  I  S  I  R  P  I  N  R  L  P  F  K  C  T  C  K  K  I  S  M  C  S  L  H  S  S  C  R  V  K  E  Y  C  I  T  T  L  A  N  N  R  E  *  F  L  I  N  M  W  *  F  I  T  H  I  I  K  H  M  Y  L  F  K  I  N  V  Q  F  F  W  V  M  H  W  F  D  S  V </second_frame>
            <third_frame>   *  A  S  G  *  I  M  I  F  V  *  Q  V  T  G  I  T  R  G  R  R  R  L  V  F  G  P  S  N  K  T  K  L  V  C  *  P  I  S  I  H  *  F  L  R  C  Y  Y  F  P  Q  Q  K  E  L  L  Q  N  *  G  L  L  P  E  N  Y  *  F  Y  N  D  C  S  N  T  F  S  *  F  P  F  *  L  L  K  F  *  R  L  M  *  L  Y  F  R  F  *  L  *  N  T  S  F  S  D  Q  I  S  S  S  G  F  F  T  F  *  *  M  A  L  H  A  T  A  F  S  F  T  G  V  S  T  S  S  K  S  S  R  S  A  L  L  S  V  F  P  L  P  R  R  C  T  V  K  A  T  S  Q  Y  P  H  S  F  P  R  C  K  I  Q   : V  *  G  R  A  L  P  S  D  N  G  L  V  E  K  D  E  S  S  L  V  V  C  F  G  E  M  L  I  D  F  V  P  T  T  S  G  L  S  L  A  E  A  P  A  F  K  K  A  P  G  G  A  P  A  N  V  A  V  G  I  S  R  L  G  G  S  S  A  F  I  G  K  :  V  G  E  D  E  F  G  Y  M  L  A  E  I  L  K  E  N  N  V  N  S  D  G  M  R  F  D  P  G  A  R  T  A  L  A  F  V  T  L  R  K  D  G  E  R  E  F  M  F  Y  R  N  P  S  A  D  M  L  L  Q  E  D  E  L  D  L  E  L  I  R  K  :  A  K  V  F  H  Y  G  S  I  S  L  I  T  E  P  C  K  S  A  H  I  A  A  A  K  A  A  K  D  A  G  V  I  L  S  Y  D  P  N  L  R  L  P  L  W  P  S  A  E  S  A  R  E  G  I  L  S  I  W  N  T  A  D  I  I  K  :  I  S  E  E  E  I  S  F  L  T  Q  G  E  D  P  Y  D  D  N  V  V  R  K  L  Y  H  P  N  L  K  L  L  L  V  T  E  G  P  E  G  C  R  Y  Y  T  K  :  D  F  S  G  R  V  K  G  I  K  V  D  A  V  D  T  T  G  A  G  D  A  F  V  A  G  I  L  S  Q  L  A  S  D  V  S  L  L  Q  :  D  E  G  K  L  R  D  A  L  S  F  A  N  A  C  G  A  L  T  V  M  E  R  G  A  I  P  A  L  P  T  K  E  V  V  L  N  A  L  L  K  S  V  A  *  Y  P  S  D  L  L  I  G  C  H  L  N  A  L  A  K  R  S  P  C  A  P  C  I  V  L  V  G  *  K  N  I  V  *  P  H  *  P  I  I  E  N  N  F  *  *  I  C  G  S  S  *  P  T  L  L  S  T  C  I  Y  S  R  S  M  F  N  S  F  G  *  C  I  G  L  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8593" stop="8381"/>
                    <exon start="7552" stop="7340"/>
                    <exon start="6811" stop="6614"/>
                    <exon start="6471" stop="6334"/>
                    <exon start="5610" stop="5494"/>
                    <exon start="4805" stop="4671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRALPSDNGLVEKDESSLVVCFGEMLIDFVPTTSGLSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGEDEFGYMLAEILKENNVNSDGMRFDPGARTALAFVTLRKDGEREFMFYRNPSADMLLQEDELDLELIRKAKVFHYGSISLITEPCKSAHIAAAKAAKDAGVILSYDPNLRLPLWPSAESAREGILSIWNTADIIKISEEEISFLTQGEDPYDDNVVRKLYHPNLKLLLVTEGPEGCRYYTKDFSGRVKGIKVDAVDTTGAGDAFVAGILSQLASDVSLLQDEGKLRDALSFANACGALTVMERGAIPALPTKEVVLNALLKSVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8955" stop="8716"/>
                    <exon start="8598" stop="8563"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNCILGFNCEIRVSQIRSVPLVFLLSNKWLFMLLLSPSLEFLLQVNLPEALCFQSFLFLEDALSKQLPSIRTAFLDVKSKFKEEHCQVTMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="8720" PGL_stop="9116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8720" e_stop="9116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="8720" e_stop="9116" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8720" stop="9116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTTACATCGAGGAAAGCTGTGCGGATACTGGGAAGTTGCTTTGACAGTGCATCTTCTAGGAAGAGGAAAGACTGAAAGCAAAGCGCTTCTGGAAGATTTACTTGAAGTAGAAACTCCAGTGAAGGAGAAAGCAGTAGCATGAAGAGCCATTTATTAGAAAGTAAAAAAACCAGAGGAACTGATCTGATCTGAGAAACTCGTATTTCACAATTAAAACCTAAAATACAGTTACATCAGGCGTCAAAATTTCAGCAACTAAAATGGAAATTAGGAGAAGGTATTGGAGCAATCGTTGTAAAACTAGTAATTTTCAGGCAATAAACCCTAATTTTGAAGCAATTCTTTCTGTTGGGGAAAATAGTAGCAGCGGAGAAATCAATGAATCGAAATTGGC</gDNA_template>
            <first_frame> D  F  T  S  R  K  A  V  R  I  L  G  S  C  F  D  S  A  S  S  R  K  R  K  D  *  K  Q  S  A  S  G  R  F  T  *  S  R  N  S  S  E  G  E  S  S  S  M  K  S  H  L  L  E  S  K  K  T  R  G  T  D  L  I  *  E  T  R  I  S  Q  L  K  P  K  I  Q  L  H  Q  A  S  K  F  Q  Q  L  K  W  K  L  G  E  G  I  G  A  I  V  V  K  L  V  I  F  R  Q  *  T  L  I  L  K  Q  F  F  L  L  G  K  I  V  A  A  E  K  S  M  N  R  N  W  </first_frame>
            <second_frame>  I  L  H  R  G  K  L  C  G  Y  W  E  V  A  L  T  V  H  L  L  G  R  G  K  T  E  S  K  A  L  L  E  D  L  L  E  V  E  T  P  V  K  E  K  A  V  A  *  R  A  I  Y  *  K  V  K  K  P  E  E  L  I  *  S  E  K  L  V  F  H  N  *  N  L  K  Y  S  Y  I  R  R  Q  N  F  S  N  *  N  G  N  *  E  K  V  L  E  Q  S  L  *  N  *  *  F  S  G  N  K  P  *  F  *  S  N  S  F  C  W  G  K  *  *  Q  R  R  N  Q  *  I  E  I  G </second_frame>
            <third_frame>   F  Y  I  E  E  S  C  A  D  T  G  K  L  L  *  Q  C  I  F  *  E  E  E  R  L  K  A  K  R  F  W  K  I  Y  L  K  *  K  L  Q  *  R  R  K  Q  *  H  E  E  P  F  I  R  K  *  K  N  Q  R  N  *  S  D  L  R  N  S  Y  F  T  I  K  T  *  N  T  V  T  S  G  V  K  I  S  A  T  K  M  E  I  R  R  R  Y  W  S  N  R  C  K  T  S  N  F  Q  A  I  N  P  N  F  E  A  I  L  S  V  G  E  N  S  S  S  G  E  I  N  E  S  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0073P13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="17520" PGL_stop="17069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17520" e_stop="17069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="17520" e_stop="17069" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17520" stop="17196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17520" stop="17228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAAAAGATATATGTTTTTCTCTCACTTTATACAAAAACATAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGCTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTATATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGCGTATATACAATTTTCTCGCGCATTATACAAAACAGAAACAGAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAAATTTTTGGCAAATAGACGCCTGACAAACTTTAGCTAACGTTTACTATGAAGCACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGGATATTAG</gDNA_template>
            <first_frame> *  N  V  Y  I  L  H  N  Y  K  C  I  A  K  R  Y  M  F  F  S  H  F  I  Q  K  H  K  H  N  I  Y  T  F  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  A  G  L  F  L  C  N  I  *  S  K  M  F  I  N  Y  I  I  K  C  I  T  R  R  Y  I  F  L  H  A  Y  I  Q  F  S  R  A  L  Y  K  T  E  T  E  F  I  H  F  C  V  *  S  E  R  G  E  R  E  *  R  V  A  S  E  I  F  G  K  *  T  P  D  K  L  *  L  T  F  T  M  K  H  N  *  I  K  P  *  L  L  H  L  F  *  D  I   </first_frame>
            <second_frame>  K  M  Y  I  Y  C  I  I  I  S  V  *  Q  K  D  I  C  F  S  L  T  L  Y  K  N  I  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  Y  F  C  M  R  I  Y  N  F  L  A  H  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  R  E  W  R  A  K  F  L  A  N  R  R  L  T  N  F  S  *  R  L  L  *  S  T  I  K  S  N  P  S  Y  S  I  Y  F  R  I  L  </second_frame>
            <third_frame>   K  C  I  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  *  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  Y  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  Y  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  I  I  Q  N  R  N  R  I  Y  T  L  L  C  I  K  R  E  R  R  A  R  I  E  S  G  E  R  N  F  W  Q  I  D  A  *  Q  T  L  A  N  V  Y  Y  E  A  Q  L  N  Q  T  L  A  T  P  F  I  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0073P13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="18011" PGL_stop="19411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18011" e_stop="19411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="18011" e_stop="19411" e_length="1401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18011" stop="19411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18028" stop="18517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18028" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18028" stop="18431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18028" stop="18424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18030" stop="18767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18034" stop="18725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18034" stop="18517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18035" stop="18579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18043" stop="18574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18053" stop="18777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18368" stop="18805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18368" stop="18805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18368" stop="18805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18375" stop="18808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18375" stop="18598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18385" stop="18683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18512" stop="19189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18512" stop="19030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18512" stop="19007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18533" stop="19019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18595" stop="19084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18650" stop="19357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19110" stop="19374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAAAAAAAAAAGAAAACTCTTCCCCTTCCCCTTCCGCATCTTTTCCCTTCCATACTGTCTCCGCAAATGGCCAAAACTCCCAGCGACTCCAAACAGCCGGCAGTTTCATCGGCGGAGATGGACGGAGTCGAGAAGGTATTCAGGAAGTTTGACGCCAATGGCGACGGAAAAATCTCTCTATCGGAGCTTGGCGCGATTCTGAATGCACTTGGCAGTAAGACGTCGCCGGATGAGGTAAATAGAATAATGTTGGAAGTTGATACTGATGGGGATGGTTTTATTGACTTGAAAGAGTTTGCTGCTTTTTACTGTCCGCGAGGAGCGGACGGTGATAATAAGGAGCTTCGGGAGGCTTTCGACTTGTATGATAAGGACAAAAACGGCAAAATCACAGCGGCTGAATTGCATTCTGTTATGAAGAGCCTCGGAGAGAAGTGCTCGCTCAAGGATTGCCGTCGTATGATCAGCAAGGTGGATGTTGACGGCGATGGATGCGTTAACTTTGAGGAGTTTAAGAAGATGATGAGTAGGACGTGACTTTTCGGATCATAACTTATGGAATCAACGGTAGGTTTATTTGCAACCGATTTCGGAACTCTGTAGATACGCTTCTGTTTCTGCCATCGTTTTTGCTGTCAATCCACTCTAACTGTAGTTAGGTATGAAGAAATTCCGAATCAGCAAAAAACTTTATTATTATCCTATTTGATTTGGGATTATGATAATTCAAAAAAGGTAAGAATAATACTTTGCAAAAATAAAAATTAGTCTTAAGACATCTACTATTGAGTCACGCGCAATCCATCTCTGTTACTGCTCATTTTATCTACTACTTTTATTTGCTTTTTTGGTACTTTTGAGTGCTTTTGAAGAAATGCATTTTCAAAGGTGCTGATAGTGCCAAGACCACACGGAATTGTAATCGTGTTAATTGGGCAACGCGCTTGTAGCTTTCATATTGCTAGTGGTAAATATGTACTCCGCCTATGTCAGTTTTTATTTTTTCCTCCGAAACGCCGTTTTTCATTTATTAAAGGCGTTTTGCATTTAATACTACTTCCACCTGTTTTTCCACTTTTCCGTCAATATCTTAATCCATTTCCACGAAAATACTAAGATAGTACTTAATTATTAGGTTGTGGAGTCTGATTAATATATATAGTTATTTAAGAAGTTTAACAGGTGAAATTGCCAGGGGTTATGGAGTGTGGGAGCCCCCATCCGAAGGAGGGTTTGGGGCGCTGCCCCGACCTAAATTTTAGGCTGTAGTATTTTTTCTCTGTAACCAAAAGTATTCTGATTTATCAATATATATGTAATCAAAAGTATTCTGATTTATCAATATATATATTTCATCGCCGTGGAAGTTTACTCACAAATTGTTACCACAAATATTG</gDNA_template>
            <first_frame> R  T  K  K  K  E  N  S  S  P  S  P  S  A  S  F  P  F  H  T  V  S  A  N  G  Q  N  S  Q  R  L  Q  T  A  G  S  F  I  G  G  D  G  R  S  R  E  G  I  Q  E  V  *  R  Q  W  R  R  K  N  L  S  I  G  A  W  R  D  S  E  C  T  W  Q  *  D  V  A  G  *  G  K  *  N  N  V  G  S  *  Y  *  W  G  W  F  Y  *  L  E  R  V  C  C  F  L  L  S  A  R  S  G  R  *  *  *  G  A  S  G  G  F  R  L  V  *  *  G  Q  K  R  Q  N  H  S  G  *  I  A  F  C  Y  E  E  P  R  R  E  V  L  A  Q  G  L  P  S  Y  D  Q  Q  G  G  C  *  R  R  W  M  R  *  L  *  G  V  *  E  D  D  E  *  D  V  T  F  R  I  I  T  Y  G  I  N  G  R  F  I  C  N  R  F  R  N  S  V  D  T  L  L  F  L  P  S  F  L  L  S  I  H  S  N  C  S  *  V  *  R  N  S  E  S  A  K  N  F  I  I  I  L  F  D  L  G  L  *  *  F  K  K  G  K  N  N  T  L  Q  K  *  K  L  V  L  R  H  L  L  L  S  H  A  Q  S  I  S  V  T  A  H  F  I  Y  Y  F  Y  L  L  F  W  Y  F  *  V  L  L  K  K  C  I  F  K  G  A  D  S  A  K  T  T  R  N  C  N  R  V  N  W  A  T  R  L  *  L  S  Y  C  *  W  *  I  C  T  P  P  M  S  V  F  I  F  S  S  E  T  P  F  F  I  Y  *  R  R  F  A  F  N  T  T  S  T  C  F  S  T  F  P  S  I  S  *  S  I  S  T  K  I  L  R  *  Y  L  I  I  R  L  W  S  L  I  N  I  Y  S  Y  L  R  S  L  T  G  E  I  A  R  G  Y  G  V  W  E  P  P  S  E  G  G  F  G  A  L  P  R  P  K  F  *  A  V  V  F  F  L  C  N  Q  K  Y  S  D  L  S  I  Y  M  *  S  K  V  F  *  F  I  N  I  Y  I  S  S  P  W  K  F  T  H  K  L  L  P  Q  I  L </first_frame>
            <second_frame>  E  Q  K  K  K  K  T  L  P  L  P  L  P  H  L  F  P  S  I  L  S  P  Q  M  A  K  T  P  S  D  S  K  Q  P  A  V  S  S  A  E  M  D  G  V  E  K  V  F  R  K  F  D  A  N  G  D  G  K  I  S  L  S  E  L  G  A  I  L  N  A  L  G  S  K  T  S  P  D  E  V  N  R  I  M  L  E  V  D  T  D  G  D  G  F  I  D  L  K  E  F  A  A  F  Y  C  P  R  G  A  D  G  D  N  K  E  L  R  E  A  F  D  L  Y  D  K  D  K  N  G  K  I  T  A  A  E  L  H  S  V  M  K  S  L  G  E  K  C  S  L  K  D  C  R  R  M  I  S  K  V  D  V  D  G  D  G  C  V  N  F  E  E  F  K  K  M  M  S  R  T  *  L  F  G  S  *  L  M  E  S  T  V  G  L  F  A  T  D  F  G  T  L  *  I  R  F  C  F  C  H  R  F  C  C  Q  S  T  L  T  V  V  R  Y  E  E  I  P  N  Q  Q  K  T  L  L  L  S  Y  L  I  W  D  Y  D  N  S  K  K  V  R  I  I  L  C  K  N  K  N  *  S  *  D  I  Y  Y  *  V  T  R  N  P  S  L  L  L  L  I  L  S  T  T  F  I  C  F  F  G  T  F  E  C  F  *  R  N  A  F  S  K  V  L  I  V  P  R  P  H  G  I  V  I  V  L  I  G  Q  R  A  C  S  F  H  I  A  S  G  K  Y  V  L  R  L  C  Q  F  L  F  F  P  P  K  R  R  F  S  F  I  K  G  V  L  H  L  I  L  L  P  P  V  F  P  L  F  R  Q  Y  L  N  P  F  P  R  K  Y  *  D  S  T  *  L  L  G  C  G  V  *  L  I  Y  I  V  I  *  E  V  *  Q  V  K  L  P  G  V  M  E  C  G  S  P  H  P  K  E  G  L  G  R  C  P  D  L  N  F  R  L  *  Y  F  F  S  V  T  K  S  I  L  I  Y  Q  Y  I  C  N  Q  K  Y  S  D  L  S  I  Y  I  F  H  R  R  G  S  L  L  T  N  C  Y  H  K  Y   </second_frame>
            <third_frame>   N  K  K  K  R  K  L  F  P  F  P  F  R  I  F  S  L  P  Y  C  L  R  K  W  P  K  L  P  A  T  P  N  S  R  Q  F  H  R  R  R  W  T  E  S  R  R  Y  S  G  S  L  T  P  M  A  T  E  K  S  L  Y  R  S  L  A  R  F  *  M  H  L  A  V  R  R  R  R  M  R  *  I  E  *  C  W  K  L  I  L  M  G  M  V  L  L  T  *  K  S  L  L  L  F  T  V  R  E  E  R  T  V  I  I  R  S  F  G  R  L  S  T  C  M  I  R  T  K  T  A  K  S  Q  R  L  N  C  I  L  L  *  R  A  S  E  R  S  A  R  S  R  I  A  V  V  *  S  A  R  W  M  L  T  A  M  D  A  L  T  L  R  S  L  R  R  *  *  V  G  R  D  F  S  D  H  N  L  W  N  Q  R  *  V  Y  L  Q  P  I  S  E  L  C  R  Y  A  S  V  S  A  I  V  F  A  V  N  P  L  *  L  *  L  G  M  K  K  F  R  I  S  K  K  L  Y  Y  Y  P  I  *  F  G  I  M  I  I  Q  K  R  *  E  *  Y  F  A  K  I  K  I  S  L  K  T  S  T  I  E  S  R  A  I  H  L  C  Y  C  S  F  Y  L  L  L  L  F  A  F  L  V  L  L  S  A  F  E  E  M  H  F  Q  R  C  *  *  C  Q  D  H  T  E  L  *  S  C  *  L  G  N  A  L  V  A  F  I  L  L  V  V  N  M  Y  S  A  Y  V  S  F  Y  F  F  L  R  N  A  V  F  H  L  L  K  A  F  C  I  *  Y  Y  F  H  L  F  F  H  F  S  V  N  I  L  I  H  F  H  E  N  T  K  I  V  L  N  Y  *  V  V  E  S  D  *  Y  I  *  L  F  K  K  F  N  R  *  N  C  Q  G  L  W  S  V  G  A  P  I  R  R  R  V  W  G  A  A  P  T  *  I  L  G  C  S  I  F  S  L  *  P  K  V  F  *  F  I  N  I  Y  V  I  K  S  I  L  I  Y  Q  Y  I  Y  F  I  A  V  E  V  Y  S  Q  I  V  T  T  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18012" stop="18551"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKKKKTLPLPLPHLFPSILSPQMAKTPSDSKQPAVSSAEMDGVEKVFRKFDANGDGKISLSELGAILNALGSKTSPDEVNRIMLEVDTDGDGFIDLKEFAAFYCPRGADGDNKELREAFDLYDKDKNGKITAAELHSVMKSLGEKCSLKDCRRMISKVDVDGDGCVNFEEFKKMMSRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18885" stop="19130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNAFSKVLIVPRPHGIVIVLIGQRACSFHIASGKYVLRLCQFLFFPPKRRFSFIKGVLHLILLPPVFPLFRQYLNPFPRKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26383" PGL_stop="21386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26383" e_stop="25849"/>
            <exon e_start="25124" e_stop="24700"/>
            <exon e_start="24623" e_stop="24438"/>
            <exon e_start="24350" e_stop="24084"/>
            <exon e_start="21982" e_stop="21386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26383" e_stop="25849" e_length="535"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.935">
            <gDNA_intron_boundary i_start="25848" i_stop="25125" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25124" e_stop="24700" e_length="425"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24623" e_stop="24438" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24350" e_stop="24084" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21982" e_stop="21386" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26383" stop="25849"/>
              <exon start="25124" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26372" stop="25887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26365" stop="25849"/>
              <exon start="25124" stop="25080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26365" stop="25849"/>
              <exon start="25124" stop="25088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26364" stop="25932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26360" stop="25849"/>
              <exon start="25124" stop="25054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26224" stop="25849"/>
              <exon start="25124" stop="24700"/>
              <exon start="24623" stop="24524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26156" stop="25995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26132" stop="25849"/>
              <exon start="25124" stop="24839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25873" stop="25849"/>
              <exon start="25124" stop="24812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25124" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24967" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24897" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24897" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24896" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24853" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24618" stop="24438"/>
              <exon start="24350" stop="24174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24618" stop="24438"/>
              <exon start="24350" stop="24200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24577" stop="24438"/>
              <exon start="24350" stop="24084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24272" stop="24084"/>
              <exon start="21982" stop="21386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539345" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21896" stop="21464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21756" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGACCAAAATACGTGTGCAAGAGAGAGACCACCGGAGCACCAAACGCCACCCAACAACCACCCATTCAATTCTTCTAGAAAAGAACATCTTCCTCAAAATTATCGATGAAGGATCGCTCCTCAGTAATTGTTCGTTGATCCTACAAATTCAATCACGGCTCTTCTTGAATCTTTCGTTTGTATTCTCACAATTCATCATCACCGCAAAGTGTTGACCCTTAATCCAACTCTTCTGGTGGACGATAAGCACCGGACCCCTTCCCCTCACGGAGGTAGGGGTGCCTCACCCGCTGAAGGCGGTTGCCCCTCCGATCTCCTCTTCCTCGCCGGCGGCGGTCCAATTCTTCCTTTCTCTTTTTCCTTCTCCTAATTTTTCGTATAAGAGTTGTATTTTTGATTATCCATCCAAGAACAGGACCGATGTTGACTGTAAAGAGGGTGCCTACACTGGTTTCCAACTATCAAGAGGATGTTCTCGAAGGTAACGTCATGGGTTGTGGCCGCAAGTGCCTCGGAAAATGCTGCATGCCTG : TTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT : GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG : GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG : TGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACTAGCAAGTTTTG</gDNA_template>
            <first_frame> H  *  P  K  Y  V  C  K  R  E  T  T  G  A  P  N  A  T  Q  Q  P  P  I  Q  F  F  *  K  R  T  S  S  S  K  L  S  M  K  D  R  S  S  V  I  V  R  *  S  Y  K  F  N  H  G  S  S  *  I  F  R  L  Y  S  H  N  S  S  S  P  Q  S  V  D  P  *  S  N  S  S  G  G  R  *  A  P  D  P  F  P  S  R  R  *  G  C  L  T  R  *  R  R  L  P  L  R  S  P  L  P  R  R  R  R  S  N  S  S  F  L  F  F  L  L  L  I  F  R  I  R  V  V  F  L  I  I  H  P  R  T  G  P  M  L  T  V  K  R  V  P  T  L  V  S  N  Y  Q  E  D  V  L  E  G  N  V  M  G  C  G  R  K  C  L  G  K  C  C  M  P   : V  S  V  L  P  L  Y  A  F  K  N  D  D  N  E  P  I  E  N  D  V  Q  T  L  P  E  E  E  C  Q  M  S  F  L  N  D  L  L  L  G  L  W  E  E  R  M  S  Q  G  L  F  R  Y  D  V  T  T  C  E  T  K  V  I  P  G  R  C  G  F  I  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  C  I  D  K  V  L  Q  P  F  D  E  N  K  F  N  F  T  K  V  G  Q  E  E  V  L  F  R  F  E  P  S  T  D  Y  K  A  H  Y  F  S  G  M  R  V  N  S  G  I  S  P  S  I  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  R  V  L  D  C  L  P  Q  R  I  D  R  D  S  F  A  I  A  L  H  F  A  R  E  V  A  D  P  F  F  R  V  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  Y  L  S  V  P  F  P  V  E  K  A  P  I  Q  K  I  L  A  R  K  G  L  G  G  A  G  V  I  V  S  K  L  L  N  Y  P  V  R  G  F  A  F  E  G  G  N  G  S  T  A  R  D  L  S  D  A  V  V  N  S  C  I  S  L  Q  N  K  N  I  P  F  N  I  L  I  A  Q  C  G  K  K  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  V  V  D  Q  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  I  V  L  K  R  T  K  D  Y  N  D  A  S  E  E  Y  A  W  K  L  L  S  E  V  S  I  S  E  E  R  F  E  E  V  K  G  Y  I  S  E  A  A  D  L  Q  A  D  E  D  E  N  I  N  P  E  K  E  I  P  D  S  P  G  P  Q  V  A  S  H  I  P  P  D  C  L  V  L  Q  *  R  I  C  G  L  L  L  Q  D  L  I  K  V  *  S  I  I  *  C  M  V  E  I  L  C  V  C  F  S  S  I  L  F  D  A  Y  C  C  L  G  W  R  L  *  S  P  N  S  V  K  R  H  G  C  K  L  W  S  L  A  G  L  F  T  V  P  F  L  L  V  F  *  L  C  *  Q  M  F  L  I  I  T  P  V  *  D  *  Q  V  L </first_frame>
            <second_frame>  I  D  Q  N  T  C  A  R  E  R  P  P  E  H  Q  T  P  P  N  N  H  P  F  N  S  S  R  K  E  H  L  P  Q  N  Y  R  *  R  I  A  P  Q  *  L  F  V  D  P  T  N  S  I  T  A  L  L  E  S  F  V  C  I  L  T  I  H  H  H  R  K  V  L  T  L  N  P  T  L  L  V  D  D  K  H  R  T  P  S  P  H  G  G  R  G  A  S  P  A  E  G  G  C  P  S  D  L  L  F  L  A  G  G  G  P  I  L  P  F  S  F  S  F  S  *  F  F  V  *  E  L  Y  F  *  L  S  I  Q  E  Q  D  R  C  *  L  *  R  G  C  L  H  W  F  P  T  I  K  R  M  F  S  K  V  T  S  W  V  V  A  A  S  A  S  E  N  A  A  C  L  :  F  Q  Y  F  L  Y  M  H  S  R  M  M  I  M  S  Q  L  K  M  M  F  K  P  C  L  R  R  S  V  R  C  H  S  *  T  I  C  C  W  A  Y  G  R  S  G  *  A  R  D  Y  F  D  M  M  *  Q  P  V  R  R  R  S  F  L  G  D  V  V  L  L  R  N  *  M  R  G  A  T  *  R  S  A  Q  Q  S  F  A  L  I  R  F  F  S  L  L  T  R  T  N  S  T  L  P  K  W  A  R  K  K  C  F  S  G  L  N  Q  V  P  T  T  R  P  I  T  F  P  A  C  E  *  T  V  V  F  H  L  V  L  L  L  S  M :   *  A  Q  L  S  M  G  T  F  F  *  Y  L  E  F  L  I  A  Y  L  R  E  L  I  V  I  V  L  Q  L  L  S  I  L  P  E  K  W  Q  I  L  S  L  G  *  V  I  T  V  W  A  L  L  L  P  L  T  T  S  T  S  R :   R  I  T  C  Q  C  H  F  Q  L  R  K  H  Q  Y  R  K  Y  W  Q  G  R  G  W  V  V  L  E  *  L  Y  L  S  Y  *  I  T  P  Y  E  V  L  L  L  R  E  E  M  E  V  L  P  V  I  C  L  M  L  L  *  I  P  A  F  P  F  R  I  K  T  S  L  S  T  F  S  L  L  S  V  E  R  R  F  F  C  F  P  S :   V  M  Q  R  S  K  H  *  E  L  *  T  K  S  S  W  T  L  R  *  T  L  L  Y  G  K  L  V  D  I  *  C  L  S  E  Q  R  I  T  M  M  H  Q  R  N  M  H  G  N  F  F  L  R  F  P  Y  Q  R  R  D  L  K  K  *  R  A  I  F  L  K  Q  L  I  Y  K  Q  M  R  M  K  T  S  I  Q  R  R  K  F  Q  I  L  L  V  R  R  W  P  H  I  F  L  Q  I  V  W  C  C  S  E  E  F  V  A  C  S  C  K  I  *  *  K  F  E  V  L  S  S  V  W  L  K  F  C  V  F  V  F  P  A  S  C  L  M  H  T  V  V  L  V  G  G  C  N  P  Q  I  V  L  N  V  M  A  A  S  C  G  L  W  Q  D  C  L  Q  Y  L  F  C  W  C  F  D  C  A  S  K  C  S  *  *  *  H  Q  C  R  T  S  K  F   </second_frame>
            <third_frame>   L  T  K  I  R  V  Q  E  R  D  H  R  S  T  K  R  H  P  T  T  T  H  S  I  L  L  E  K  N  I  F  L  K  I  I  D  E  G  S  L  L  S  N  C  S  L  I  L  Q  I  Q  S  R  L  F  L  N  L  S  F  V  F  S  Q  F  I  I  T  A  K  C  *  P  L  I  Q  L  F  W  W  T  I  S  T  G  P  L  P  L  T  E  V  G  V  P  H  P  L  K  A  V  A  P  P  I  S  S  S  S  P  A  A  V  Q  F  F  L  S  L  F  P  S  P  N  F  S  Y  K  S  C  I  F  D  Y  P  S  K  N  R  T  D  V  D  C  K  E  G  A  Y  T  G  F  Q  L  S  R  G  C  S  R  R  *  R  H  G  L  W  P  Q  V  P  R  K  M  L  H  A  C :   F  S  T  S  S  I  C  I  Q  E  *  *  *  *  A  N  *  K  *  C  S  N  L  A  *  G  G  V  S  D  V  I  L  E  R  F  V  V  G  L  M  G  G  A  D  E  P  G  T  I  S  I  *  C  D  N  L  *  D  E  G  H  S  W  E  M  W  F  Y  C  A  T  E  *  G  A  P  P  K  E  A  P  N  R  V  L  H  *  *  G  S  S  A  F  *  R  E  Q  I  Q  L  Y  Q  S  G  P  G  R  S  A  F  Q  V  *  T  K  Y  R  L  Q  G  P  L  L  F  R  H  A  S  K  Q  W  Y  F  T  *  Y  C  C  Y  Q   : C  E  P  N  *  V  W  A  R  S  F  D  T  S  S  S  *  L  L  T  S  E  N  *  S  *  *  F  C  N  C  S  P  F  C  Q  R  S  G  R  S  F  L  *  G  R  L  *  Q  F  G  R  F  C  Y  H  *  P  P  P  L  P   : G  V  L  L  V  S  A  I  S  S  *  E  S  T  N  T  E  N  T  G  K  E  G  A  G  W  C  W  S  D  C  I  *  V  I  K  L  P  R  T  R  F  C  F  *  G  R  K  W  K  Y  C  P  *  F  V  *  C  C  C  E  F  L  H  F  P  S  E  *  K  H  P  F  Q  H  S  H  C  S  V  W  K  E  D  F  S  A  S  P   : V  L  C  R  E  A  S  T  R  S  C  R  P  R  A  P  G  H  S  G  E  P  C  C  M  G  N  *  W  T  Y  S  A  *  A  N  K  G  L  Q  *  C  I  R  G  I  C  M  E  T  S  F  *  G  F  H  I  R  G  E  I  *  R  S  K  G  L  Y  F  *  S  S  *  S  T  S  R  *  G  *  K  H  Q  S  R  E  G  N  S  R  F  S  W  S  A  G  G  L  T  Y  S  S  R  L  F  G  V  A  V  K  N  L  W  L  A  L  A  R  S  N  K  S  L  K  Y  Y  L  V  Y  G  *  N  F  V  C  L  F  F  Q  H  L  V  *  C  I  L  L  S  W  L  E  V  V  I  P  K  *  C  *  T  S  W  L  Q  A  V  V  F  G  R  I  V  Y  S  T  F  F  V  G  V  L  T  V  L  A  N  V  P  N  N  N  T  S  V  G  L  A  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26086" stop="25849"/>
                    <exon start="25124" stop="24700"/>
                    <exon start="24623" stop="24438"/>
                    <exon start="24350" stop="24084"/>
                    <exon start="21982" stop="21656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLPLRSPLPRRRRSNSSFLFFLLLIFRIRVVFLIIHPRTGPMLTVKRVPTLVSNYQEDVLEGNVMGCGRKCLGKCCMPVSVLPLYAFKNDDNEPIENDVQTLPEEECQMSFLNDLLLGLWEERMSQGLFRYDVTTCETKVIPGRCGFIAQLNEGRHLKKRPTEFCIDKVLQPFDENKFNFTKVGQEEVLFRFEPSTDYKAHYFSGMRVNSGISPSIVAINVSPIEYGHVLLIPRVLDCLPQRIDRDSFAIALHFAREVADPFFRVGYNSLGAFATINHLHFQAYYLSVPFPVEKAPIQKILARKGLGGAGVIVSKLLNYPVRGFAFEGGNGSTARDLSDAVVNSCISLQNKNIPFNILIAQCGKKIFLLPQCYAEKQALGVVDQELLDTQVNPAVWEISGHIVLKRTKDYNDASEEYAWKLLSEVSISEERFEEVKGYISEAADLQADEDENINPEKEIPDSPGPQVASHIPPDCLVLQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26381" stop="26166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTKIRVQERDHRSTKRHPTTTHSILLEKNIFLKIIDEGSLLSNCSLILQIQSRLFLNLSFVFSQFIITAKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21621" stop="21418"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFEVLSSVWLKFCVFVFPASCLMHTVVLVGGCNPQIVLNVMAASCGLWQDCLQYLFCWCFDCASKCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25127" e_stop="24700"/>
            <exon e_start="24623" e_stop="24438"/>
            <exon e_start="24350" e_stop="24084"/>
            <exon e_start="21982" e_stop="21386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25127" e_stop="24700" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24699" i_stop="24624" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24623" e_stop="24438" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24437" i_stop="24351" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24350" e_stop="24084" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24083" i_stop="21983" i_length="2101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21982" e_stop="21386" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25127" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25124" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24967" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24897" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24897" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24896" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24853" stop="24700"/>
              <exon start="24623" stop="24438"/>
              <exon start="24350" stop="24234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24618" stop="24438"/>
              <exon start="24350" stop="24174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24618" stop="24438"/>
              <exon start="24350" stop="24200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24580" stop="24438"/>
              <exon start="24350" stop="24084"/>
              <exon start="21982" stop="21962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24577" stop="24438"/>
              <exon start="24350" stop="24084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24272" stop="24084"/>
              <exon start="21982" stop="21386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539345" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21896" stop="21464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21756" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTTTCAGTACTTCCTCTATATGCATTCAAGAATGATGATAATGAGCCAATTGAAAATGATGTTCAAACCTTGCCTGAGGAGGAGTGTCAGATGTCATTCTTGAACGATTTGTTGTTGGGCTTATGGGAGGAGCGGATGAGCCAGGGACTATTTCGATATGATGTGACAACCTGTGAGACGAAGGTCATTCCTGGGAGATGTGGTTTTATTGCGCAACTGAATGAGGGGCGCCACCTAAAGAAGCGCCCAACAGAGTTTTGCATTGATAAGGTTCTTCAGCCTTTTGACGAGAACAAATTCAACTTTACCAAAGTGGGCCAGGAAGAAGTGCTTTTCAGGTTTGAACCAAGTACCGACTACAAGGCCCATTACTTTTCCGGCATGCGAGTAAACAGTGGTATTTCACCTAGTATTGTTGCTATCAAT : GTGAGCCCAATTGAGTATGGGCACGTTCTTTTGATACCTCGAGTTCTTGATTGCTTACCTCAGAGAATTGATCGTGATAGTTTTGCAATTGCTCTCCATTTTGCCAGAGAAGTGGCAGATCCTTTCTTTAGGGTAGGTTATAACAGTTTGGGCGCTTTTGCTACCATTAACCACCTCCACTTCCAG : GCGTATTACTTGTCAGTGCCATTTCCAGTTGAGAAAGCACCAATACAGAAAATACTGGCAAGGAAGGGGCTGGGTGGTGCTGGAGTGATTGTATCTAAGTTATTAAATTACCCCGTACGAGGTTTTGCTTTTGAGGGAGGAAATGGAAGTACTGCCCGTGATTTGTCTGATGCTGTTGTGAATTCCTGCATTTCCCTTCAGAATAAAAACATCCCTTTCAACATTCTCATTGCTCAGTGTGGAAAGAAGATTTTTCTGCTTCCCCAG : TGTTATGCAGAGAAGCAAGCACTAGGAGTTGTAGACCAAGAGCTCCTGGACACTCAGGTGAACCCTGCTGTATGGGAAATTAGTGGACATATAGTGCTTAAGCGAACAAAGGATTACAATGATGCATCAGAGGAATATGCATGGAAACTTCTTTCTGAGGTTTCCATATCAGAGGAGAGATTTGAAGAAGTAAAGGGCTATATTTCTGAAGCAGCTGATCTACAAGCAGATGAGGATGAAAACATCAATCCAGAGAAGGAAATTCCAGATTCTCCTGGTCCGCAGGTGGCCTCACATATTCCTCCAGATTGTTTGGTGTTGCAGTGAAGAATTTGTGGCTTGCTCTTGCAAGATCTAATAAAAGTTTGAAGTATTATCTAGTGTATGGTTGAAATTTTGTGTGTTTGTTTTTCCAGCATCTTGTTTGATGCATACTGTTGTCTTGGTTGGAGGTTGTAATCCCCAAATAGTGTTAAACGTCATGGCTGCAAGCTGTGGTCTTTGGCAGGATTGTTTACAGTACCTTTTTTGTTGGTGTTTTGACTGTGCTAGCAAATGTTCCTAATAATAACACCAGTGTAGGACTAGCAAGTTTTG</gDNA_template>
            <first_frame> Q  F  Q  Y  F  L  Y  M  H  S  R  M  M  I  M  S  Q  L  K  M  M  F  K  P  C  L  R  R  S  V  R  C  H  S  *  T  I  C  C  W  A  Y  G  R  S  G  *  A  R  D  Y  F  D  M  M  *  Q  P  V  R  R  R  S  F  L  G  D  V  V  L  L  R  N  *  M  R  G  A  T  *  R  S  A  Q  Q  S  F  A  L  I  R  F  F  S  L  L  T  R  T  N  S  T  L  P  K  W  A  R  K  K  C  F  S  G  L  N  Q  V  P  T  T  R  P  I  T  F  P  A  C  E  *  T  V  V  F  H  L  V  L  L  L  S  M :   *  A  Q  L  S  M  G  T  F  F  *  Y  L  E  F  L  I  A  Y  L  R  E  L  I  V  I  V  L  Q  L  L  S  I  L  P  E  K  W  Q  I  L  S  L  G  *  V  I  T  V  W  A  L  L  L  P  L  T  T  S  T  S  R :   R  I  T  C  Q  C  H  F  Q  L  R  K  H  Q  Y  R  K  Y  W  Q  G  R  G  W  V  V  L  E  *  L  Y  L  S  Y  *  I  T  P  Y  E  V  L  L  L  R  E  E  M  E  V  L  P  V  I  C  L  M  L  L  *  I  P  A  F  P  F  R  I  K  T  S  L  S  T  F  S  L  L  S  V  E  R  R  F  F  C  F  P  S :   V  M  Q  R  S  K  H  *  E  L  *  T  K  S  S  W  T  L  R  *  T  L  L  Y  G  K  L  V  D  I  *  C  L  S  E  Q  R  I  T  M  M  H  Q  R  N  M  H  G  N  F  F  L  R  F  P  Y  Q  R  R  D  L  K  K  *  R  A  I  F  L  K  Q  L  I  Y  K  Q  M  R  M  K  T  S  I  Q  R  R  K  F  Q  I  L  L  V  R  R  W  P  H  I  F  L  Q  I  V  W  C  C  S  E  E  F  V  A  C  S  C  K  I  *  *  K  F  E  V  L  S  S  V  W  L  K  F  C  V  F  V  F  P  A  S  C  L  M  H  T  V  V  L  V  G  G  C  N  P  Q  I  V  L  N  V  M  A  A  S  C  G  L  W  Q  D  C  L  Q  Y  L  F  C  W  C  F  D  C  A  S  K  C  S  *  *  *  H  Q  C  R  T  S  K  F   </first_frame>
            <second_frame>  S  F  S  T  S  S  I  C  I  Q  E  *  *  *  *  A  N  *  K  *  C  S  N  L  A  *  G  G  V  S  D  V  I  L  E  R  F  V  V  G  L  M  G  G  A  D  E  P  G  T  I  S  I  *  C  D  N  L  *  D  E  G  H  S  W  E  M  W  F  Y  C  A  T  E  *  G  A  P  P  K  E  A  P  N  R  V  L  H  *  *  G  S  S  A  F  *  R  E  Q  I  Q  L  Y  Q  S  G  P  G  R  S  A  F  Q  V  *  T  K  Y  R  L  Q  G  P  L  L  F  R  H  A  S  K  Q  W  Y  F  T  *  Y  C  C  Y  Q   : C  E  P  N  *  V  W  A  R  S  F  D  T  S  S  S  *  L  L  T  S  E  N  *  S  *  *  F  C  N  C  S  P  F  C  Q  R  S  G  R  S  F  L  *  G  R  L  *  Q  F  G  R  F  C  Y  H  *  P  P  P  L  P   : G  V  L  L  V  S  A  I  S  S  *  E  S  T  N  T  E  N  T  G  K  E  G  A  G  W  C  W  S  D  C  I  *  V  I  K  L  P  R  T  R  F  C  F  *  G  R  K  W  K  Y  C  P  *  F  V  *  C  C  C  E  F  L  H  F  P  S  E  *  K  H  P  F  Q  H  S  H  C  S  V  W  K  E  D  F  S  A  S  P   : V  L  C  R  E  A  S  T  R  S  C  R  P  R  A  P  G  H  S  G  E  P  C  C  M  G  N  *  W  T  Y  S  A  *  A  N  K  G  L  Q  *  C  I  R  G  I  C  M  E  T  S  F  *  G  F  H  I  R  G  E  I  *  R  S  K  G  L  Y  F  *  S  S  *  S  T  S  R  *  G  *  K  H  Q  S  R  E  G  N  S  R  F  S  W  S  A  G  G  L  T  Y  S  S  R  L  F  G  V  A  V  K  N  L  W  L  A  L  A  R  S  N  K  S  L  K  Y  Y  L  V  Y  G  *  N  F  V  C  L  F  F  Q  H  L  V  *  C  I  L  L  S  W  L  E  V  V  I  P  K  *  C  *  T  S  W  L  Q  A  V  V  F  G  R  I  V  Y  S  T  F  F  V  G  V  L  T  V  L  A  N  V  P  N  N  N  T  S  V  G  L  A  S  F  </second_frame>
            <third_frame>   V  S  V  L  P  L  Y  A  F  K  N  D  D  N  E  P  I  E  N  D  V  Q  T  L  P  E  E  E  C  Q  M  S  F  L  N  D  L  L  L  G  L  W  E  E  R  M  S  Q  G  L  F  R  Y  D  V  T  T  C  E  T  K  V  I  P  G  R  C  G  F  I  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  C  I  D  K  V  L  Q  P  F  D  E  N  K  F  N  F  T  K  V  G  Q  E  E  V  L  F  R  F  E  P  S  T  D  Y  K  A  H  Y  F  S  G  M  R  V  N  S  G  I  S  P  S  I  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  R  V  L  D  C  L  P  Q  R  I  D  R  D  S  F  A  I  A  L  H  F  A  R  E  V  A  D  P  F  F  R  V  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  Y  L  S  V  P  F  P  V  E  K  A  P  I  Q  K  I  L  A  R  K  G  L  G  G  A  G  V  I  V  S  K  L  L  N  Y  P  V  R  G  F  A  F  E  G  G  N  G  S  T  A  R  D  L  S  D  A  V  V  N  S  C  I  S  L  Q  N  K  N  I  P  F  N  I  L  I  A  Q  C  G  K  K  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  V  V  D  Q  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  I  V  L  K  R  T  K  D  Y  N  D  A  S  E  E  Y  A  W  K  L  L  S  E  V  S  I  S  E  E  R  F  E  E  V  K  G  Y  I  S  E  A  A  D  L  Q  A  D  E  D  E  N  I  N  P  E  K  E  I  P  D  S  P  G  P  Q  V  A  S  H  I  P  P  D  C  L  V  L  Q  *  R  I  C  G  L  L  L  Q  D  L  I  K  V  *  S  I  I  *  C  M  V  E  I  L  C  V  C  F  S  S  I  L  F  D  A  Y  C  C  L  G  W  R  L  *  S  P  N  S  V  K  R  H  G  C  K  L  W  S  L  A  G  L  F  T  V  P  F  L  L  V  F  *  L  C  *  Q  M  F  L  I  I  T  P  V  *  D  *  Q  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25125" stop="24700"/>
                    <exon start="24623" stop="24438"/>
                    <exon start="24350" stop="24084"/>
                    <exon start="21982" stop="21656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSVLPLYAFKNDDNEPIENDVQTLPEEECQMSFLNDLLLGLWEERMSQGLFRYDVTTCETKVIPGRCGFIAQLNEGRHLKKRPTEFCIDKVLQPFDENKFNFTKVGQEEVLFRFEPSTDYKAHYFSGMRVNSGISPSIVAINVSPIEYGHVLLIPRVLDCLPQRIDRDSFAIALHFAREVADPFFRVGYNSLGAFATINHLHFQAYYLSVPFPVEKAPIQKILARKGLGGAGVIVSKLLNYPVRGFAFEGGNGSTARDLSDAVVNSCISLQNKNIPFNILIAQCGKKIFLLPQCYAEKQALGVVDQELLDTQVNPAVWEISGHIVLKRTKDYNDASEEYAWKLLSEVSISEERFEEVKGYISEAADLQADEDENINPEKEIPDSPGPQVASHIPPDCLVLQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21621" stop="21418"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFEVLSSVWLKFCVFVFPASCLMHTVVLVGGCNPQIVLNVMAASCGLWQDCLQYLFCWCFDCASKCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="21387" PGL_stop="21858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21387" e_stop="21858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21387" e_stop="21858" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21387" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTTGCTAGTCCTACACTGGTGTTATTATTAGGAACATTTGCTAGCACAGTCAAAACACCAACAAAAAAGGTACTGTAAACAATCCTGCCAAAGACCACAGCTTGCAGCCATGACGTTTAACACTATTTGGGGATTACAACCTCCAACCAAGACAACAGTATGCATCAAACAAGATGCTGGAAAAACAAACACACAAAATTTCAACCATACACTAGATAATACTTCAAACTTTTATTAGATCTTGCAAGAGCAAGCCACAAATTCTTCACTGCAACACCAAACAATCTGGAGGAATATGTGAGGCCACCTGCGGACCAGGAGAATCTGGAATTTCCTTCTCTGGATTGATGTTTTCATCCTCATCTGCTTGTAGATCAGCTGCTTCAGAAATATAGCCCTTTACTTCTTCAAATCTCTCCTCTGATATGGAAACCTCAGAAAGAAGTTTCCATGCATATTCCTCTGATG</gDNA_template>
            <first_frame> K  T  C  *  S  Y  T  G  V  I  I  R  N  I  C  *  H  S  Q  N  T  N  K  K  G  T  V  N  N  P  A  K  D  H  S  L  Q  P  *  R  L  T  L  F  G  D  Y  N  L  Q  P  R  Q  Q  Y  A  S  N  K  M  L  E  K  Q  T  H  K  I  S  T  I  H  *  I  I  L  Q  T  F  I  R  S  C  K  S  K  P  Q  I  L  H  C  N  T  K  Q  S  G  G  I  C  E  A  T  C  G  P  G  E  S  G  I  S  F  S  G  L  M  F  S  S  S  S  A  C  R  S  A  A  S  E  I  *  P  F  T  S  S  N  L  S  S  D  M  E  T  S  E  R  S  F  H  A  Y  S  S  D  </first_frame>
            <second_frame>  K  L  A  S  P  T  L  V  L  L  L  G  T  F  A  S  T  V  K  T  P  T  K  K  V  L  *  T  I  L  P  K  T  T  A  C  S  H  D  V  *  H  Y  L  G  I  T  T  S  N  Q  D  N  S  M  H  Q  T  R  C  W  K  N  K  H  T  K  F  Q  P  Y  T  R  *  Y  F  K  L  L  L  D  L  A  R  A  S  H  K  F  F  T  A  T  P  N  N  L  E  E  Y  V  R  P  P  A  D  Q  E  N  L  E  F  P  S  L  D  *  C  F  H  P  H  L  L  V  D  Q  L  L  Q  K  Y  S  P  L  L  L  Q  I  S  P  L  I  W  K  P  Q  K  E  V  S  M  H  I  P  L  M </second_frame>
            <third_frame>   N  L  L  V  L  H  W  C  Y  Y  *  E  H  L  L  A  Q  S  K  H  Q  Q  K  R  Y  C  K  Q  S  C  Q  R  P  Q  L  A  A  M  T  F  N  T  I  W  G  L  Q  P  P  T  K  T  T  V  C  I  K  Q  D  A  G  K  T  N  T  Q  N  F  N  H  T  L  D  N  T  S  N  F  Y  *  I  L  Q  E  Q  A  T  N  S  S  L  Q  H  Q  T  I  W  R  N  M  *  G  H  L  R  T  R  R  I  W  N  F  L  L  W  I  D  V  F  I  L  I  C  L  *  I  S  C  F  R  N  I  A  L  Y  F  F  K  S  L  L  *  Y  G  N  L  R  K  K  F  P  C  I  F  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21422" stop="21628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHLLAQSKHQQKRYCKQSCQRPQLAAMTFNTIWGLQPPTKTTVCIKQDAGKTNTQNFNHTLDNTSNFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="29989" PGL_stop="28191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29981" e_stop="29860"/>
            <exon e_start="29119" e_stop="29024"/>
            <exon e_start="28880" e_stop="28487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29981" e_stop="29860" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29119" e_stop="29024" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28880" e_stop="28487" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29981" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29959" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29958" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29958" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29896" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29092" stop="29024"/>
              <exon start="28880" stop="28668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG : AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG : CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAAATGAACTAC</gDNA_template>
            <first_frame> Q  S  F  E  W  R  I  C  W  V  L  *  E  F  V  F  T  E  V  L  I  W  L  L  E  M  L  L  P  A  I  L  T  L  L  L  G  W  A  N  R :   N  *  R  L  E  W  *  R  R  I  S  T  Q  N  G  M  K  N  *  H  Y  L  L  P  S  Q  F  S  Q  S  N  C :   M  F  M  T  R  I  Y  F  L  L  T  I  R  W  V  M  Q  K  L  T  Y  S  H  L  *  M  R  R  E  S  G  T  R  T  S  L  V  E  P  *  S  Q  K  *  S  Q  A  G  K  I  V  S  L  K  R  A  P  L  C  G  K  M  I  R  L  Y  K  M  C  L  L  D  C  E  M  L  S  V  V  K  *  N  Y  N  C  S  G  L  T  F  L  V  P  R  V  C  S  *  L  L  L  S  I  K  S  C  T  V  T  I  L  Y  S  C  C  I  L  V  C  F  L  I  K  N  F  C  Y  Q  M  N  Y </first_frame>
            <second_frame>  K  V  L  N  G  E  F  V  G  S  Y  E  S  S  Y  S  Q  R  Y  *  F  G  Y  *  R  C  Y  Y  Q  R  S  L  R  C  C  *  D  G  Q  T   : E  I  E  D  S  S  G  E  E  E  S  Q  P  R  M  E  *  R  I  N  T  I  Y  Y  R  A  N  S  P  N  Q  T   : A  C  L  *  Q  G  Y  I  F  S  *  R  *  D  G  *  C  R  S  *  H  T  A  I  Y  R  C  G  E  K  A  V  Q  E  H  P  *  W  N  H  N  H  K  N  K  A  K  Q  A  K  L  F  L  *  R  E  L  H  C  V  G  K  *  S  G  C  T  K  C  V  Y  *  I  A  K  C  *  A  W  *  N  R  T  T  I  A  V  D  *  H  S  W  F  Q  G  C  V  A  N  Y  Y  Y  P  S  N  H  V  Q  S  L  S  F  I  H  V  V  F  W  S  V  F  *  L  K  I  S  V  T  K  *  T   </second_frame>
            <third_frame>   K  F  *  M  E  N  L  L  G  L  M  R  V  R  I  H  R  G  I  N  L  A  I  R  D  V  T  T  S  D  P  Y  V  V  V  R  M  G  K  Q  :  K  L  K  T  R  V  V  K  K  N  L  N  P  E  W  N  E  E  L  T  L  S  I  T  E  P  I  L  P  I  K  L  :  H  V  Y  D  K  D  I  F  S  L  D  D  K  M  G  D  A  E  V  D  I  Q  P  F  I  D  A  A  R  K  R  Y  K  N  I  P  S  G  T  I  I  T  K  I  K  P  S  R  Q  N  C  F  S  E  E  S  S  I  V  W  E  N  D  Q  V  V  Q  N  V  F  I  R  L  R  N  V  E  R  G  E  I  E  L  Q  L  Q  W  I  D  I  P  G  S  K  G  V  *  L  T  T  T  I  H  Q  I  M  Y  S  H  Y  P  L  F  M  L  Y  S  G  L  F  F  D  *  K  F  L  L  P  N  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29970" stop="29860"/>
                    <exon start="29119" stop="29024"/>
                    <exon start="28880" stop="28590"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MENLLGLMRVRIHRGINLAIRDVTTSDPYVVVRMGKQKLKTRVVKKNLNPEWNEELTLSITEPILPIKLHVYDKDIFSLDDKMGDAEVDIQPFIDAARKRYKNIPSGTIITKIKPSRQNCFSEESSIVWENDQVVQNVFIRLRNVERGEIELQLQWIDIPGSKGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29989" e_stop="29860"/>
            <exon e_start="29119" e_stop="29024"/>
            <exon e_start="28880" e_stop="28491"/>
            <exon e_start="28200" e_stop="28191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.576" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29989" e_stop="29860" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29859" i_stop="29120" i_length="740"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29119" e_stop="29024" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="29023" i_stop="28881" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28880" e_stop="28491" e_length="390"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.576">
            <gDNA_intron_boundary i_start="28490" i_stop="28201" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="28200" e_stop="28191" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29989" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28491"/>
              <exon start="28200" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29981" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29959" stop="29860"/>
              <exon start="29119" stop="29024"/>
              <exon start="28880" stop="28539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29092" stop="29024"/>
              <exon start="28880" stop="28668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTTCAAAGTTTTGAATGGAGAATTTGTTGGGTCTTATGAGAGTTCGTATTCACAGAGGTATTAATTTGGCTATTAGAGATGTTACTACCAGCGATCCTTACGTTGTTGTTAGGATGGGCAAACAG : AAATTGAAGACTCGAGTGGTGAAGAAGAATCTCAACCCAGAATGGAATGAAGAATTAACACTATCTATTACCGAGCCAATTCTCCCAATCAAACTG : CATGTTTATGACAAGGATATATTTTCTCTTGACGATAAGATGGGTGATGCAGAAGTTGACATACAGCCATTTATAGATGCGGCGAGAAAGCGGTACAAGAACATCCCTAGTGGAACCATAATCACAAAAATAAAGCCAAGCAGGCAAAATTGTTTCTCTGAAGAGAGCTCCATTGTGTGGGAAAATGATCAGGTTGTACAAAATGTGTTTATTAGATTGCGAAATGTTGAGCGTGGTGAAATAGAACTACAATTGCAGTGGATTGACATTCCTGGTTCCAAGGGTGTGTAGCTAACTACTACTATCCATCAAATCATGTACAGTCACTATCCTTTATTCATGTTGTATTCTGGTCTGTTTTTTGATTAAAAATTTCTGTTACCAAATGAA : AAGGAGAAAA</gDNA_template>
            <first_frame> L  H  F  K  V  L  N  G  E  F  V  G  S  Y  E  S  S  Y  S  Q  R  Y  *  F  G  Y  *  R  C  Y  Y  Q  R  S  L  R  C  C  *  D  G  Q  T   : E  I  E  D  S  S  G  E  E  E  S  Q  P  R  M  E  *  R  I  N  T  I  Y  Y  R  A  N  S  P  N  Q  T   : A  C  L  *  Q  G  Y  I  F  S  *  R  *  D  G  *  C  R  S  *  H  T  A  I  Y  R  C  G  E  K  A  V  Q  E  H  P  *  W  N  H  N  H  K  N  K  A  K  Q  A  K  L  F  L  *  R  E  L  H  C  V  G  K  *  S  G  C  T  K  C  V  Y  *  I  A  K  C  *  A  W  *  N  R  T  T  I  A  V  D  *  H  S  W  F  Q  G  C  V  A  N  Y  Y  Y  P  S  N  H  V  Q  S  L  S  F  I  H  V  V  F  W  S  V  F  *  L  K  I  S  V  T  K  *   : K  G  E   </first_frame>
            <second_frame>  F  I  S  K  F  *  M  E  N  L  L  G  L  M  R  V  R  I  H  R  G  I  N  L  A  I  R  D  V  T  T  S  D  P  Y  V  V  V  R  M  G  K  Q  :  K  L  K  T  R  V  V  K  K  N  L  N  P  E  W  N  E  E  L  T  L  S  I  T  E  P  I  L  P  I  K  L  :  H  V  Y  D  K  D  I  F  S  L  D  D  K  M  G  D  A  E  V  D  I  Q  P  F  I  D  A  A  R  K  R  Y  K  N  I  P  S  G  T  I  I  T  K  I  K  P  S  R  Q  N  C  F  S  E  E  S  S  I  V  W  E  N  D  Q  V  V  Q  N  V  F  I  R  L  R  N  V  E  R  G  E  I  E  L  Q  L  Q  W  I  D  I  P  G  S  K  G  V  *  L  T  T  T  I  H  Q  I  M  Y  S  H  Y  P  L  F  M  L  Y  S  G  L  F  F  D  *  K  F  L  L  P  N  E  :  K  E  K  </second_frame>
            <third_frame>   S  F  Q  S  F  E  W  R  I  C  W  V  L  *  E  F  V  F  T  E  V  L  I  W  L  L  E  M  L  L  P  A  I  L  T  L  L  L  G  W  A  N  R :   N  *  R  L  E  W  *  R  R  I  S  T  Q  N  G  M  K  N  *  H  Y  L  L  P  S  Q  F  S  Q  S  N  C :   M  F  M  T  R  I  Y  F  L  L  T  I  R  W  V  M  Q  K  L  T  Y  S  H  L  *  M  R  R  E  S  G  T  R  T  S  L  V  E  P  *  S  Q  K  *  S  Q  A  G  K  I  V  S  L  K  R  A  P  L  C  G  K  M  I  R  L  Y  K  M  C  L  L  D  C  E  M  L  S  V  V  K  *  N  Y  N  C  S  G  L  T  F  L  V  P  R  V  C  S  *  L  L  L  S  I  K  S  C  T  V  T  I  L  Y  S  C  C  I  L  V  C  F  L  I  K  N  F  C  Y  Q  M  K :   R  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29970" stop="29860"/>
                    <exon start="29119" stop="29024"/>
                    <exon start="28880" stop="28590"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MENLLGLMRVRIHRGINLAIRDVTTSDPYVVVRMGKQKLKTRVVKKNLNPEWNEELTLSITEPILPIKLHVYDKDIFSLDDKMGDAEVDIQPFIDAARKRYKNIPSGTIITKIKPSRQNCFSEESSIVWENDQVVQNVFIRLRNVERGEIELQLQWIDIPGSKGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="36345" PGL_stop="40574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36464" e_stop="36541"/>
            <exon e_start="36839" e_stop="37076"/>
            <exon e_start="37257" e_stop="37346"/>
            <exon e_start="38317" e_stop="38385"/>
            <exon e_start="38679" e_stop="38784"/>
            <exon e_start="38902" e_stop="38990"/>
            <exon e_start="39566" e_stop="39678"/>
            <exon e_start="39777" e_stop="39974"/>
            <exon e_start="40101" e_stop="40574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="0.537" e_score="0.949"/>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="36464" e_stop="36541" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="0.537">
            <gDNA_intron_boundary i_start="36542" i_stop="36838" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36839" e_stop="37076" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.980">
            <gDNA_intron_boundary i_start="37077" i_stop="37256" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37257" e_stop="37346" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="37347" i_stop="38316" i_length="970"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38317" e_stop="38385" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38386" i_stop="38678" i_length="293"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38679" e_stop="38784" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.827" acc_prob="0.811">
            <gDNA_intron_boundary i_start="38785" i_stop="38901" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38902" e_stop="38990" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.859">
            <gDNA_intron_boundary i_start="38991" i_stop="39565" i_length="575"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39566" e_stop="39678" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39679" i_stop="39776" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39777" e_stop="39974" e_length="198"/>
          </exon>
          <intron i_serial="8" don_prob="0.911" acc_prob="0.967">
            <gDNA_intron_boundary i_start="39975" i_stop="40100" i_length="126"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="40101" e_stop="40574" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36464" stop="36541"/>
              <exon start="36839" stop="37076"/>
              <exon start="37257" stop="37346"/>
              <exon start="38317" stop="38385"/>
              <exon start="38679" stop="38784"/>
              <exon start="38902" stop="38990"/>
              <exon start="39566" stop="39678"/>
              <exon start="39777" stop="39852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37023" stop="37076"/>
              <exon start="37257" stop="37346"/>
              <exon start="38317" stop="38385"/>
              <exon start="38679" stop="38784"/>
              <exon start="38902" stop="38954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39635" stop="39678"/>
              <exon start="39777" stop="39974"/>
              <exon start="40101" stop="40574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39635" stop="39678"/>
              <exon start="39777" stop="39974"/>
              <exon start="40101" stop="40529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39635" stop="39678"/>
              <exon start="39777" stop="39974"/>
              <exon start="40101" stop="40517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39635" stop="39678"/>
              <exon start="39777" stop="39974"/>
              <exon start="40101" stop="40516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAAATTGTACTACAGGAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAG : GTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAG : TTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAG : TTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAG : GCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAG : CCATAAGTGAAAAATTGAAGGAGCAAATAAAGGGCGTGGAAGCTGTACAAGCCAAAGAGGTTCCTTTATCCTGGGTTGGGGTAGCAGAG : AGTGTGCAAGTAATGGGCTCCTTTGATGGTTGGAGTCAAGGAGAGCACTTATCTCCAGAGTACACCGGCTCTTATATGAACTTTTCAGCTACATTGTTCCTAAGACCTGGAAG : GTACGAAATTAAGTTCTTGGTAGATGATGAGTGGAAACTATCCCCAGAATTACCAACTACCGGAGAGGGGTTAACTAAGAACAATTTATTGGTCGTGGAATAGCTCATTTAGCTAGGACAGGTGCTGAAAGTTTGTACTATAGGTGGAAAAACAACTTGTTAATCGTCGTACAGTTGATCTCAGGACTCTTAAGCAGC : GTAGCTCATGAGGTGGGATTGCTCAAGACATCTAATTCGCTCGACCTACTATTAACTCAAAGTGTTGAAGGTATATATAATAGACCAGACCTCCTAAAGTGGTGGTATAAAGGGCGATCCAAGACTTCCGTTTTTCTCTTATAAAGTCTTGAGTTGAATGTTCAGACTCTTTCGAAAATGTTTGGAAGCTTTTGGTAAAAAGGTTTATTTTTAAAAAAGTGAGGTATTTATTTGGCTGAGCTTTTATTTTTTAAAATAAGTTGTACTATCACCACAAATTTAAGTGAAATGATTCTGTTCGATTTATCAGATGAATCTGATAATAAATGTCTCCAATTTTGTATGATTTACATCTAACCCACCTCCATTGTTAATAGTTAGTAGTCCGTACATTAAACTTTGATGATTCAAAAAAATCAGAGCCGCGACTTTATTATTTAGTATATACAACAACCCTAATATTATATTATAGTT</gDNA_template>
            <first_frame> F  *  I  V  L  Q  E  F  F  N  Y  G  L  *  P  A  *  F  T  W  A  N  L  F  S  *  :  V  Q  G  G  K  Y  R  W  S  *  R  K  Y  D  F  I  *  I  K  N  R  F  L  *  D  A  Y  I  I  F  S  P  *  L  E  T  Q  H  P  M  Y  F  L  E  N  I  L  C  P  *  K  F  T  G  S  I  R  E  N  R  R  R  W  S  V  *  S  *  T  S  S  *  A  T  F  E  N  R  R   : V  E  V  I  A  C  *  C  *  K  I  E  A  S  Q  E  I  E  *  S  Q  P  I  *  S  V  A  *  A  R   : V  A  S  *  G  G  C  D  G  *  F  Q  K  *  T  F  S  H  R  T  *  D  S   : G  F  G  *  I  G  *  R  N  C  K  I  C  Y  P  C  W  F  K  K  N  *  R  Q  I  Y  P  I  T  P  I  F  T  F  G  S :   H  K  *  K  I  E  G  A  N  K  G  R  G  S  C  T  S  Q  R  G  S  F  I  L  G  W  G  S  R   : E  C  A  S  N  G  L  L  *  W  L  E  S  R  R  A  L  I  S  R  V  H  R  L  L  Y  E  L  F  S  Y  I  V  P  K  T  W  K  :  V  R  N  *  V  L  G  R  *  *  V  E  T  I  P  R  I  T  N  Y  R  R  G  V  N  *  E  Q  F  I  G  R  G  I  A  H  L  A  R  T  G  A  E  S  L  Y  Y  R  W  K  N  N  L  L  I  V  V  Q  L  I  S  G  L  L  S  S  :  V  A  H  E  V  G  L  L  K  T  S  N  S  L  D  L  L  L  T  Q  S  V  E  G  I  Y  N  R  P  D  L  L  K  W  W  Y  K  G  R  S  K  T  S  V  F  L  L  *  S  L  E  L  N  V  Q  T  L  S  K  M  F  G  S  F  W  *  K  G  L  F  L  K  K  *  G  I  Y  L  A  E  L  L  F  F  K  I  S  C  T  I  T  T  N  L  S  E  M  I  L  F  D  L  S  D  E  S  D  N  K  C  L  Q  F  C  M  I  Y  I  *  P  T  S  I  V  N  S  *  *  S  V  H  *  T  L  M  I  Q  K  N  Q  S  R  D  F  I  I  *  Y  I  Q  Q  P  *  Y  Y  I  I  V </first_frame>
            <second_frame>  S  K  L  Y  Y  R  N  S  L  I  M  D  C  N  L  L  N  S  L  G  Q  T  C  F  P  R :   F  K  V  E  N  I  D  G  V  R  G  N  M  T  S  Y  K  S  R  I  G  F  C  R  M  H  T  L  F  S  V  P  N  W  K  L  S  I  P  C  T  S  W  K  I  F  C  A  P  E  N  S  L  V  V  S  E  K  I  E  D  A  G  L  S  D  P  E  Q  V  P  E  Q  P  L  R  T  E  E  :  L  K  L  L  L  A  D  A  E  R  S  K  L  L  K  K  L  S  E  A  N  R  Y  N  R  L  L  K  R  E  :  L  Q  A  K  E  D  A  M  V  N  F  K  S  E  L  S  V  T  E  L  E  I  Q  :  A  L  A  R  L  A  E  E  I  A  K  S  A  I  P  A  G  S  R  K  I  K  G  R  Y  I  Q  S  H  L  F  S  R  L  E   : A  I  S  E  K  L  K  E  Q  I  K  G  V  E  A  V  Q  A  K  E  V  P  L  S  W  V  G  V  A  E  :  S  V  Q  V  M  G  S  F  D  G  W  S  Q  G  E  H  L  S  P  E  Y  T  G  S  Y  M  N  F  S  A  T  L  F  L  R  P  G  R :   Y  E  I  K  F  L  V  D  D  E  W  K  L  S  P  E  L  P  T  T  G  E  G  L  T  K  N  N  L  L  V  V  E  *  L  I  *  L  G  Q  V  L  K  V  C  T  I  G  G  K  T  T  C  *  S  S  Y  S  *  S  Q  D  S  *  A  A :   *  L  M  R  W  D  C  S  R  H  L  I  R  S  T  Y  Y  *  L  K  V  L  K  V  Y  I  I  D  Q  T  S  *  S  G  G  I  K  G  D  P  R  L  P  F  F  S  Y  K  V  L  S  *  M  F  R  L  F  R  K  C  L  E  A  F  G  K  K  V  Y  F  *  K  S  E  V  F  I  W  L  S  F  Y  F  L  K  *  V  V  L  S  P  Q  I  *  V  K  *  F  C  S  I  Y  Q  M  N  L  I  I  N  V  S  N  F  V  *  F  T  S  N  P  P  P  L  L  I  V  S  S  P  Y  I  K  L  *  *  F  K  K  I  R  A  A  T  L  L  F  S  I  Y  N  N  P  N  I  I  L  *   </second_frame>
            <third_frame>   L  N  C  T  T  G  I  L  *  L  W  T  V  T  C  L  I  H  L  G  K  P  V  F  L   : G  S  R  W  K  I  S  M  E  L  E  E  I  *  L  H  I  N  Q  E  *  V  S  V  G  C  I  H  Y  F  Q  S  L  I  G  N  S  A  S  H  V  L  L  G  K  Y  F  V  P  L  K  I  H  W  *  Y  P  R  K  *  K  T  L  V  C  L  I  L  N  K  F  L  S  N  L  *  E  P  K  S :   *  S  Y  C  L  L  M  L  K  D  R  S  F  S  R  N  *  V  K  P  T  D  I  I  G  C  L  S  E  S :   C  K  L  R  R  M  R  W  L  I  S  K  V  N  F  Q  S  P  N  L  R  F  R :   L  W  L  D  W  L  K  K  L  Q  N  L  L  S  L  L  V  Q  E  K  L  K  A  D  I  S  N  H  T  Y  F  H  V  W  K  :  P  *  V  K  N  *  R  S  K  *  R  A  W  K  L  Y  K  P  K  R  F  L  Y  P  G  L  G  *  Q  R :   V  C  K  *  W  A  P  L  M  V  G  V  K  E  S  T  Y  L  Q  S  T  P  A  L  I  *  T  F  Q  L  H  C  S  *  D  L  E   : G  T  K  L  S  S  W  *  M  M  S  G  N  Y  P  Q  N  Y  Q  L  P  E  R  G  *  L  R  T  I  Y  W  S  W  N  S  S  F  S  *  D  R  C  *  K  F  V  L  *  V  E  K  Q  L  V  N  R  R  T  V  D  L  R  T  L  K  Q   : R  S  S  *  G  G  I  A  Q  D  I  *  F  A  R  P  T  I  N  S  K  C  *  R  Y  I  *  *  T  R  P  P  K  V  V  V  *  R  A  I  Q  D  F  R  F  S  L  I  K  S  *  V  E  C  S  D  S  F  E  N  V  W  K  L  L  V  K  R  F  I  F  K  K  V  R  Y  L  F  G  *  A  F  I  F  *  N  K  L  Y  Y  H  H  K  F  K  *  N  D  S  V  R  F  I  R  *  I  *  *  *  M  S  P  I  L  Y  D  L  H  L  T  H  L  H  C  *  *  L  V  V  R  T  L  N  F  D  D  S  K  K  S  E  P  R  L  Y  Y  L  V  Y  T  T  T  L  I  L  Y  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36465" stop="36541"/>
                    <exon start="36839" stop="37076"/>
                    <exon start="37257" stop="37346"/>
                    <exon start="38317" stop="38385"/>
                    <exon start="38679" stop="38784"/>
                    <exon start="38902" stop="38990"/>
                    <exon start="39566" stop="39678"/>
                    <exon start="39777" stop="39879"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLYYRNSLIMDCNLLNSLGQTCFPRFKVENIDGVRGNMTSYKSRIGFCRMHTLFSVPNWKLSIPCTSWKIFCAPENSLVVSEKIEDAGLSDPEQVPEQPLRTEELKLLLADAERSKLLKKLSEANRYNRLLKRELQAKEDAMVNFKSELSVTELEIQALARLAEEIAKSAIPAGSRKIKGRYIQSHLFSRLEAISEKLKEQIKGVEAVQAKEVPLSWVGVAESVQVMGSFDGWSQGEHLSPEYTGSYMNFSATLFLRPGRYEIKFLVDDEWKLSPELPTTGEGLTKNNLLVVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39855" stop="39974"/>
                    <exon start="40101" stop="40244"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQFIGRGIAHLARTGAESLYYRWKNNLLIVVQLISGLLSSVAHEVGLLKTSNSLDLLLTQSVEGIYNRPDLLKWWYKGRSKTSVFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36345" e_stop="36393"/>
            <exon e_start="36482" e_stop="36541"/>
            <exon e_start="36839" e_stop="37076"/>
            <exon e_start="37257" e_stop="37346"/>
            <exon e_start="38317" e_stop="38385"/>
            <exon e_start="38679" e_stop="38784"/>
            <exon e_start="38902" e_stop="38954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.833" e_score="0.898"/>
          <exon-intron don_prob="0.857" acc_prob="0.537" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.811" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="36345" e_stop="36393" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="36394" i_stop="36481" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36482" e_stop="36541" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.537">
            <gDNA_intron_boundary i_start="36542" i_stop="36838" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="36839" e_stop="37076" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.980">
            <gDNA_intron_boundary i_start="37077" i_stop="37256" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37257" e_stop="37346" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="37347" i_stop="38316" i_length="970"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38317" e_stop="38385" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38386" i_stop="38678" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38679" e_stop="38784" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.827" acc_prob="0.811">
            <gDNA_intron_boundary i_start="38785" i_stop="38901" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="38902" e_stop="38954" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36345" stop="36393"/>
              <exon start="36482" stop="36541"/>
              <exon start="36839" stop="37076"/>
              <exon start="37257" stop="37346"/>
              <exon start="38317" stop="38385"/>
              <exon start="38679" stop="38720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37023" stop="37076"/>
              <exon start="37257" stop="37346"/>
              <exon start="38317" stop="38385"/>
              <exon start="38679" stop="38784"/>
              <exon start="38902" stop="38954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279321" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTGCCCTCCCCTGCAATTGCTGTTTCGAGTTTCATCAGCTAGGAAG : GAATTCTTTAATTATGGACTGTAACCTGCTTAATTCACTTGGGCAAACCTGTTTTCCTAG : GTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAGAAAATAGAAGACGCTGGTCTGTCTGATCCTGAACAAGTTCCTGAGCAACCTTTGAGAACCGAAGAG : TTGAAGTTATTGCTTGCTGATGCTGAAAGATCGAAGCTTCTCAAGAAATTGAGTGAAGCCAACCGATATAATCGGTTGCTTAAGCGAGAG : TTGCAAGCTAAGGAGGATGCGATGGTTAATTTCAAAAGTGAACTTTCAGTCACCGAACTTGAGATTCAG : GCTTTGGCTAGATTGGCTGAAGAAATTGCAAAATCTGCTATCCCTGCTGGTTCAAGAAAAATTAAAGGCAGATATATCCAATCACACCTATTTTCACGTTTGGAAG : CCATAAGTGAAAAATTGAAGGAGCAAATAAAGGGCGTGGAAGCTGTACAAGCC</gDNA_template>
            <first_frame> E  L  P  S  P  A  I  A  V  S  S  F  I  S  *  E   : G  I  L  *  L  W  T  V  T  C  L  I  H  L  G  K  P  V  F  L   : G  S  R  W  K  I  S  M  E  L  E  E  I  *  L  H  I  N  Q  E  *  V  S  V  G  C  I  H  Y  F  Q  S  L  I  G  N  S  A  S  H  V  L  L  G  K  Y  F  V  P  L  K  I  H  W  *  Y  P  R  K  *  K  T  L  V  C  L  I  L  N  K  F  L  S  N  L  *  E  P  K  S :   *  S  Y  C  L  L  M  L  K  D  R  S  F  S  R  N  *  V  K  P  T  D  I  I  G  C  L  S  E  S :   C  K  L  R  R  M  R  W  L  I  S  K  V  N  F  Q  S  P  N  L  R  F  R :   L  W  L  D  W  L  K  K  L  Q  N  L  L  S  L  L  V  Q  E  K  L  K  A  D  I  S  N  H  T  Y  F  H  V  W  K  :  P  *  V  K  N  *  R  S  K  *  R  A  W  K  L  Y  K   </first_frame>
            <second_frame>  S  C  P  P  L  Q  L  L  F  R  V  S  S  A  R  K  :  E  F  F  N  Y  G  L  *  P  A  *  F  T  W  A  N  L  F  S  *  :  V  Q  G  G  K  Y  R  W  S  *  R  K  Y  D  F  I  *  I  K  N  R  F  L  *  D  A  Y  I  I  F  S  P  *  L  E  T  Q  H  P  M  Y  F  L  E  N  I  L  C  P  *  K  F  T  G  S  I  R  E  N  R  R  R  W  S  V  *  S  *  T  S  S  *  A  T  F  E  N  R  R   : V  E  V  I  A  C  *  C  *  K  I  E  A  S  Q  E  I  E  *  S  Q  P  I  *  S  V  A  *  A  R   : V  A  S  *  G  G  C  D  G  *  F  Q  K  *  T  F  S  H  R  T  *  D  S   : G  F  G  *  I  G  *  R  N  C  K  I  C  Y  P  C  W  F  K  K  N  *  R  Q  I  Y  P  I  T  P  I  F  T  F  G  S :   H  K  *  K  I  E  G  A  N  K  G  R  G  S  C  T  S  </second_frame>
            <third_frame>   V  A  L  P  C  N  C  C  F  E  F  H  Q  L  G  R :   N  S  L  I  M  D  C  N  L  L  N  S  L  G  Q  T  C  F  P  R :   F  K  V  E  N  I  D  G  V  R  G  N  M  T  S  Y  K  S  R  I  G  F  C  R  M  H  T  L  F  S  V  P  N  W  K  L  S  I  P  C  T  S  W  K  I  F  C  A  P  E  N  S  L  V  V  S  E  K  I  E  D  A  G  L  S  D  P  E  Q  V  P  E  Q  P  L  R  T  E  E  :  L  K  L  L  L  A  D  A  E  R  S  K  L  L  K  K  L  S  E  A  N  R  Y  N  R  L  L  K  R  E  :  L  Q  A  K  E  D  A  M  V  N  F  K  S  E  L  S  V  T  E  L  E  I  Q  :  A  L  A  R  L  A  E  E  I  A  K  S  A  I  P  A  G  S  R  K  I  K  G  R  Y  I  Q  S  H  L  F  S  R  L  E   : A  I  S  E  K  L  K  E  Q  I  K  G  V  E  A  V  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36347" stop="36393"/>
                    <exon start="36482" stop="36541"/>
                    <exon start="36839" stop="37076"/>
                    <exon start="37257" stop="37346"/>
                    <exon start="38317" stop="38385"/>
                    <exon start="38679" stop="38784"/>
                    <exon start="38902" stop="38954"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALPCNCCFEFHQLGRNSLIMDCNLLNSLGQTCFPRFKVENIDGVRGNMTSYKSRIGFCRMHTLFSVPNWKLSIPCTSWKIFCAPENSLVVSEKIEDAGLSDPEQVPEQPLRTEELKLLLADAERSKLLKKLSEANRYNRLLKRELQAKEDAMVNFKSELSVTELEIQALARLAEEIAKSAIPAGSRKIKGRYIQSHLFSRLEAISEKLKEQIKGVEAVQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36533" e_stop="37010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36533" e_stop="37010" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36533" stop="37010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTAGGTGATTTCTTCAACCCTGGAAAATTTTTATTTTAGGGTTTTCTTTTTCTTGGTTTGGGGACTCCAATTATACTGCAATGTGGAATCTTGATATGCATTCTCTCTCAATCTTGAACTGTATAGGTTCAACTACACTGATTTTGAATGTTGAATCCATCTTTTTATGTTTATGATTTTTTATTACCAATTTGTGTTTCCTTTTATTCTTTAATCTCCTTATGCATTATTCTGATCATACAATCTTGATCAAGAAAATGCTGACATATTCTGAATTTGTCTTTTTAATGGCAATGATAAGGTTCAAGGTGGAAAATATCGATGGAGTTAGAGGAAATATGACTTCATATAAATCAAGAATAGGTTTCTGTAGGATGCATACATTATTTTCAGTCCCTAATTGGAAACTCAGCATCCCATGTACTTCTTGGAAAATATTTTGTGCCCCTGAAAATTCACTGGTAGTATCCGAG</gDNA_template>
            <first_frame> F  S  *  V  I  S  S  T  L  E  N  F  Y  F  R  V  F  F  F  L  V  W  G  L  Q  L  Y  C  N  V  E  S  *  Y  A  F  S  L  N  L  E  L  Y  R  F  N  Y  T  D  F  E  C  *  I  H  L  F  M  F  M  I  F  Y  Y  Q  F  V  F  P  F  I  L  *  S  P  Y  A  L  F  *  S  Y  N  L  D  Q  E  N  A  D  I  F  *  I  C  L  F  N  G  N  D  K  V  Q  G  G  K  Y  R  W  S  *  R  K  Y  D  F  I  *  I  K  N  R  F  L  *  D  A  Y  I  I  F  S  P  *  L  E  T  Q  H  P  M  Y  F  L  E  N  I  L  C  P  *  K  F  T  G  S  I  R  </first_frame>
            <second_frame>  F  P  R  *  F  L  Q  P  W  K  I  F  I  L  G  F  S  F  S  W  F  G  D  S  N  Y  T  A  M  W  N  L  D  M  H  S  L  S  I  L  N  C  I  G  S  T  T  L  I  L  N  V  E  S  I  F  L  C  L  *  F  F  I  T  N  L  C  F  L  L  F  F  N  L  L  M  H  Y  S  D  H  T  I  L  I  K  K  M  L  T  Y  S  E  F  V  F  L  M  A  M  I  R  F  K  V  E  N  I  D  G  V  R  G  N  M  T  S  Y  K  S  R  I  G  F  C  R  M  H  T  L  F  S  V  P  N  W  K  L  S  I  P  C  T  S  W  K  I  F  C  A  P  E  N  S  L  V  V  S  E </second_frame>
            <third_frame>   F  L  G  D  F  F  N  P  G  K  F  L  F  *  G  F  L  F  L  G  L  G  T  P  I  I  L  Q  C  G  I  L  I  C  I  L  S  Q  S  *  T  V  *  V  Q  L  H  *  F  *  M  L  N  P  S  F  Y  V  Y  D  F  L  L  P  I  C  V  S  F  Y  S  L  I  S  L  C  I  I  L  I  I  Q  S  *  S  R  K  C  *  H  I  L  N  L  S  F  *  W  Q  *  *  G  S  R  W  K  I  S  M  E  L  E  E  I  *  L  H  I  N  Q  E  *  V  S  V  G  C  I  H  Y  F  Q  S  L  I  G  N  S  A  S  H  V  L  L  G  K  Y  F  V  P  L  K  I  H  W  *  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36714" stop="37010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFITNLCFLLFFNLLMHYSDHTILIKKMLTYSEFVFLMAMIRFKVENIDGVRGNMTSYKSRIGFCRMHTLFSVPNWKLSIPCTSWKIFCAPENSLVVSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="60360" PGL_stop="66853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60360" e_stop="60450"/>
            <exon e_start="60545" e_stop="60595"/>
            <exon e_start="60686" e_stop="60772"/>
            <exon e_start="61580" e_stop="61701"/>
            <exon e_start="61821" e_stop="61897"/>
            <exon e_start="61986" e_stop="62110"/>
            <exon e_start="62780" e_stop="62872"/>
            <exon e_start="63388" e_stop="63480"/>
            <exon e_start="63599" e_stop="63796"/>
            <exon e_start="63928" e_stop="64032"/>
            <exon e_start="64619" e_stop="64684"/>
            <exon e_start="65130" e_stop="65207"/>
            <exon e_start="65452" e_stop="65563"/>
            <exon e_start="65644" e_stop="65754"/>
            <exon e_start="66132" e_stop="66283"/>
            <exon e_start="66655" e_stop="66853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60360" e_stop="60450" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60545" e_stop="60595" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60686" e_stop="60772" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.796">
            <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61580" e_stop="61701" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61821" e_stop="61897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.956">
            <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61986" e_stop="62110" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62780" e_stop="62872" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63388" e_stop="63480" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63599" e_stop="63796" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.765" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63928" e_stop="64032" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64619" e_stop="64684" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="65130" e_stop="65207" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="65452" e_stop="65563" e_length="112"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="65644" e_stop="65754" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.882" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="66132" e_stop="66283" e_length="152"/>
          </exon>
          <intron i_serial="15" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66284" i_stop="66654" i_length="371"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="66655" e_stop="66853" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60360" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60363" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60367" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60373" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60438" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60572" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60695" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60706" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61630" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61695" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61828" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61883" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61993" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62017" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62069" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62808" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62818" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62840" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="63968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63392" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63408" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63427" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63438" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63607" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63659" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63706" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63777" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63970" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296426" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63970" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63972" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65167" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65182" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65187" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371867" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65519" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65529" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364839" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65539" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65669" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65729" stop="65754"/>
              <exon start="66132" stop="66283"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66134" stop="66283"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282814" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG : TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT : TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG : GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA : GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG : TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG : ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG : CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG : GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG : GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG : GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG : GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG : GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG : GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG : GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAG : GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</gDNA_template>
            <first_frame> N  G  Y  G  N  S  S  S  E  A  F  C  Y  N  *  Q  A  S  *  E  S  L  Q  W  R  L  Y  L  L  H   : V  I  T  A  *  *  S  C  I  R  Q  G  K  I  R  S  S   : L  A  K  A  T  E  C  S  T  R  G  C  *  S  *  D  C  *  H  Y  *  A  *  E  S  T  P  M  E   : G  A  R  T  H  S  I  R  K  F  H  F  R  F  G  D  A  S  S  W  I  S  H  D  *  Q  V  Q  *  R  I  S  W  C  Q  I  L  W  R  K  *  :  V  H  R  H  G  R  N  L  M  P  E  T  C  F  G  S  I  Q  V  G  S  C  K  M  G  S :   E  C  A  A  S  I  R  I  T  R  *  F  S  C  L  H  C  I  I  K  T  S  *  E  N  H  G  S  *  S  S  S  W  W  T  S  F  S  W  I  S   : D  *  Y  K  E  D  I  C  S  L  Y  I  L  *  D  N  A  I  Q  T  R  *  E  H  W  I  Y  *  L  *  P   : A  R  E  K  C  H  T  L  *  A  K  I  D  C  C  W  C  *  C  L  R  T  S  L  *  L  *  Q  N  P  E   : G  L  Q  Q  T  E  S  Y  F  V  S  R  Y  G  T  H  *  W  I  G  C  S  W  S  Y  P  I  T  I  *  L  C  *  C  C  H  Y  H  N  P  Q  V  P  S  W  P  S  W  C  Y  D  F  L  *  E  G  C  *  R  G  *  Q  A  R  Q  G   : G  F  L  R  L  *  R  Q  N  *  P  G  S  L  S  W  T  S  R  W  S  P  Q  S  H  H  H  W  I  G  S  C  L  E  T   : G  H  Y  S  R  I  Q  S  L  P  R  A  S  S  Q  Q  L  R  E  I  C  P   : G  F  R  G  E  G  L  *  T  C  L  W  R  N  *  *  S  L  G  F  G  E  H  E  K  Q   : G  Y  *  W  F  Q  G  *  K  S  L  G  S  C  T  Y  C  S  Q  Q  E  H  R  S  W  R  C  F  C  H  G  P  W  W  H  Q  N  G :   N  S  C  T  H  F  S  G  I  S  *  G  R  F  C  *  S  C  *  F  L  *  C  C  C  E  D  S  S  E  S  K  G  *  N  S  R :   D  K  V  E  R  L  C  I  N  T  R  I  Q  C  S  N  Q  V  *  N  C  K  T  P  S  G  C  G  G  V  C  *  A  V  P  Y  N  W  V  *  E  G  N  H  E  V  Q  K  L  R   : G  T  *  Y  Q  A  S  E  R  *  K  G  K  K  I  Q  P  *  I  A  F  K  Y  M  F  S  C  L  Y  I  V  K  K  S  S  T  C  W  F  P  C  M  Q  F  V  Y  *  S  L  T  V  Q  L  R  S  F  L  K  Q  *  T  F  V  T  F  A   </first_frame>
            <second_frame>  M  A  M  A  I  A  L  R  R  L  S  A  T  I  D  K  P  V  K  S  L  Y  N  G  G  S  I  Y  Y  M  :  S  S  L  P  N  E  A  V  Y  D  K  E  K  S  G  V  A  :  W  P  K  Q  L  N  A  P  L  E  V  V  D  P  E  I  A  D  I  I  E  H  E  K  A  R  Q  W  K  :  G  L  E  L  I  P  S  E  N  F  T  S  V  S  V  M  Q  A  V  G  S  V  M  T  N  K  Y  S  E  G  Y  P  G  A  R  Y  Y  G  G  N  E :   Y  I  D  M  A  E  T  L  C  Q  K  R  A  L  E  A  F  R  L  D  P  A  K  W  G   : V  N  V  Q  P  L  S  G  S  P  A  N  F  H  V  Y  T  A  L  L  K  P  H  E  R  I  M  A  L  D  L  P  H  G  G  H  L  S  H  G  Y  Q  :  T  D  T  K  K  I  S  A  V  S  I  F  F  E  T  M  P  Y  R  L  D  E  S  T  G  Y  I  D  Y  D  Q  :  L  E  K  S  A  T  L  F  R  P  K  L  I  V  A  G  A  S  A  Y  A  R  L  Y  D  Y  D  R  I  R  K  :  V  C  N  K  Q  K  A  I  L  L  A  D  M  A  H  I  S  G  L  V  A  A  G  V  I  P  S  P  F  D  Y  A  D  V  V  T  T  T  T  H  K  S  L  R  G  P  R  G  A  M  I  F  Y  R  K  G  V  K  E  V  N  K  Q  G  K  E  :  V  F  Y  D  Y  E  D  K  I  N  Q  A  V  F  P  G  L  Q  G  G  P  H  N  H  T  I  T  G  L  A  V  A  L  K  Q  :  A  T  T  P  E  Y  R  A  Y  Q  E  Q  V  L  S  N  S  A  K  F  A  Q  :  A  L  E  E  K  G  Y  E  L  V  S  G  G  T  D  N  H  L  V  L  V  N  M  K  N  K  :  G  I  D  G  S  R  V  E  K  V  L  E  A  V  H  I  A  A  N  K  N  T  V  P  G  D  V  S  A  M  V  P  G  G  I  R  M   : G  T  P  A  L  T  S  R  G  F  L  E  E  D  F  V  K  V  A  D  F  F  D  A  A  V  K  I  A  V  K  V  K  A  E  T  Q   : G  T  K  L  K  D  F  V  S  T  L  E  S  S  A  P  I  K  S  E  I  A  K  L  R  Q  D  V  E  E  Y  A  K  Q  F  P  T  I  G  F  E  K  E  T  M  K  Y  K  N  *  E  :  A  P  N  I  K  L  Q  K  G  E  R  G  R  K  S  N  H  E  L  L  S  S  T  C  S  H  A  Y  I  L  *  R  N  P  A  H  V  G  S  H  V  C  S  L  Y  I  N  H  L  Q  S  N  *  G  P  F  *  S  N  K  L  L  L  P  L  L  </second_frame>
            <third_frame>   W  L  W  Q  *  L  F  G  G  F  L  L  Q  L  T  S  Q  L  R  V  F  T  M  E  A  L  S  I  T  C :   H  H  C  L  M  K  L  Y  T  T  R  K  N  P  E  *  L :   G  Q  S  N  *  M  L  H  *  R  L  L  I  L  R  L  L  T  L  L  S  M  R  K  H  A  N  G  R :   G  S  N  S  F  H  Q  K  I  S  L  P  F  R  *  C  K  Q  L  D  Q  S  *  L  T  S  T  V  K  D  I  L  V  P  D  T  M  E  E  M   : S  T  *  T  W  Q  K  P  Y  A  R  N  V  L  W  K  H  S  G  W  I  L  Q  N  G  E  :  *  M  C  S  L  Y  Q  D  H  P  L  I  F  M  F  T  L  H  Y  *  N  L  M  R  E  S  W  L  L  I  F  L  M  V  D  I  F  L  M  D  I  R :   L  I  Q  R  R  Y  L  Q  S  L  Y  S  L  R  Q  C  H  T  D  S  M  R  A  L  D  I  L  T  M  T  S :   S  R  K  V  P  H  S  L  G  Q  N  *  L  L  L  V  L  V  P  T  H  V  F  M  T  M  T  E  S  G  R :   F  A  T  N  R  K  L  F  C  *  Q  I  W  H  T  L  V  D  W  L  Q  L  E  L  S  H  H  H  L  T  M  L  M  L  S  L  P  Q  P  T  S  P  F  V  A  L  V  V  L  *  F  F  I  G  R  V  L  K  R  L  T  S  K  A  R  R :   F  S  T  T  M  K  T  K  L  T  R  Q  S  F  L  D  F  K  V  V  P  T  I  T  P  S  L  D  W  Q  L  P  *  N  R :   P  L  L  Q  N  T  E  L  T  K  S  K  F  S  A  T  P  R  N  L  P  R :   L  *  R  R  R  A  M  N  L  S  L  E  E  L  I  I  T  W  F  W  *  T  *  K  T  R :   V  L  M  V  P  G  L  K  K  S  W  K  L  Y  I  L  Q  P  T  R  T  P  F  L  E  M  F  L  P  W  S  L  V  A  S  E  W  :  E  L  L  H  S  L  L  G  D  F  L  R  K  I  L  L  K  L  L  I  S  L  M  L  L  *  R  *  Q  *  K  *  R  L  K  L  K  :  G  Q  S  *  K  T  L  Y  Q  H  *  N  P  V  L  Q  S  S  L  K  L  Q  N  S  V  R  M  W  R  S  M  L  S  S  S  L  Q  L  G  L  R  R  K  P  *  S  T  K  T  K  R :   H  L  I  S  S  F  R  K  V  K  G  E  E  N  P  T  M  N  C  F  Q  V  H  V  L  M  L  I  Y  C  K  E  I  Q  H  M  L  V  P  M  Y  A  V  C  I  L  I  T  Y  S  P  T  E  V  L  F  K  A  I  N  F  C  Y  L  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60361" stop="60450"/>
                    <exon start="60545" stop="60595"/>
                    <exon start="60686" stop="60772"/>
                    <exon start="61580" stop="61701"/>
                    <exon start="61821" stop="61897"/>
                    <exon start="61986" stop="62110"/>
                    <exon start="62780" stop="62872"/>
                    <exon start="63388" stop="63480"/>
                    <exon start="63599" stop="63796"/>
                    <exon start="63928" stop="64032"/>
                    <exon start="64619" stop="64684"/>
                    <exon start="65130" stop="65207"/>
                    <exon start="65452" stop="65563"/>
                    <exon start="65644" stop="65754"/>
                    <exon start="66132" stop="66280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1554</number_coding_nucleotides>
                  <number_encoded_amino_acids>518</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAMAIALRRLSATIDKPVKSLYNGGSIYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSAKFAQALEEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVSTLESSAPIKSEIAKLRQDVEEYAKQFPTIGFEKETMKYKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66267" stop="66283"/>
                    <exon start="66655" stop="66853"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STKTKRHLISSFRKVKGEENPTMNCFQVHVLMLIYCKEIQHMLVPMYAVCILITYSPTEVLFKAINFCYLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60360" e_stop="60450"/>
            <exon e_start="60545" e_stop="60595"/>
            <exon e_start="60686" e_stop="60772"/>
            <exon e_start="61580" e_stop="61701"/>
            <exon e_start="61821" e_stop="61897"/>
            <exon e_start="61986" e_stop="62110"/>
            <exon e_start="62780" e_stop="62872"/>
            <exon e_start="63388" e_stop="63480"/>
            <exon e_start="63599" e_stop="63796"/>
            <exon e_start="63928" e_stop="64032"/>
            <exon e_start="64619" e_stop="64684"/>
            <exon e_start="65130" e_stop="65207"/>
            <exon e_start="65452" e_stop="65563"/>
            <exon e_start="65644" e_stop="65754"/>
            <exon e_start="66132" e_stop="66309"/>
            <exon e_start="66655" e_stop="66853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60360" e_stop="60450" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60545" e_stop="60595" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60686" e_stop="60772" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.796">
            <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61580" e_stop="61701" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61702" i_stop="61820" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61821" e_stop="61897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.956">
            <gDNA_intron_boundary i_start="61898" i_stop="61985" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61986" e_stop="62110" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62111" i_stop="62779" i_length="669"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62780" e_stop="62872" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62873" i_stop="63387" i_length="515"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63388" e_stop="63480" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="63481" i_stop="63598" i_length="118"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63599" e_stop="63796" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.765" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63797" i_stop="63927" i_length="131"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63928" e_stop="64032" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64033" i_stop="64618" i_length="586"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64619" e_stop="64684" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.986">
            <gDNA_intron_boundary i_start="64685" i_stop="65129" i_length="445"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="65130" e_stop="65207" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65208" i_stop="65451" i_length="244"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="65452" e_stop="65563" e_length="112"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="65564" i_stop="65643" i_length="80"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="65644" e_stop="65754" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.882" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65755" i_stop="66131" i_length="377"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="66132" e_stop="66309" e_length="178"/>
          </exon>
          <intron i_serial="15" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66310" i_stop="66654" i_length="345"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="66655" e_stop="66853" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60360" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60363" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60367" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60373" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60438" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60572" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60695" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60706" stop="60772"/>
              <exon start="61580" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61630" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61695" stop="61701"/>
              <exon start="61821" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61828" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61883" stop="61897"/>
              <exon start="61986" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61993" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62017" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62069" stop="62110"/>
              <exon start="62780" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62808" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62818" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62840" stop="62872"/>
              <exon start="63388" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="63968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63392" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63408" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63427" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63438" stop="63480"/>
              <exon start="63599" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63607" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63659" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63706" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63777" stop="63796"/>
              <exon start="63928" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63970" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296426" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63970" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63972" stop="64032"/>
              <exon start="64619" stop="64684"/>
              <exon start="65130" stop="65153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64670" stop="64684"/>
              <exon start="65130" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65143" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65167" stop="65207"/>
              <exon start="65452" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65516" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65519" stop="65563"/>
              <exon start="65644" stop="65754"/>
              <exon start="66132" stop="66239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65651" stop="65754"/>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287573" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65684" stop="65754"/>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65727" stop="65754"/>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66132" stop="66309"/>
              <exon start="66655" stop="66799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279190" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG : TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT : TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG : GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGTCATGACTAACAAGTACAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGA : GTACATAGACATGGCAGAAACCTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCAAAATGGGGAG : TGAATGTGCAGCCTCTATCAGGATCACCCGCTAATTTTCATGTTTACACTGCATTATTAAAACCTCATGAGAGAATCATGGCTCTTGATCTTCCTCATGGTGGACATCTTTCTCATGGATATCAG : ACTGATACAAAGAAGATATCTGCAGTCTCTATATTCTTTGAGACAATGCCATACAGACTCGATGAGAGCACTGGATATATTGACTATGACCAG : CTCGAGAAAAGTGCCACACTCTTTAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCCTACGCACGTCTTTATGACTATGACAGAATCCGGAAG : GTTTGCAACAAACAGAAAGCTATTTTGTTAGCAGATATGGCACACATTAGTGGATTGGTTGCAGCTGGAGTTATCCCATCACCATTTGACTATGCTGATGTTGTCACTACCACAACCCACAAGTCCCTTCGTGGCCCTCGTGGTGCTATGATTTTTTATAGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAG : GTTTTCTACGACTATGAAGACAAAATTAACCAGGCAGTCTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACCATCACTGGATTGGCAGTTGCCTTGAAACAG : GCCACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTCTCAGCAACTCCGCGAAATTTGCCCAG : GCTTTAGAGGAGAAGGGCTATGAACTTGTCTCTGGAGGAACTGATAATCACTTGGTTTTGGTGAACATGAAAAACAAG : GGTATTGATGGTTCCAGGGTTGAAAAAGTCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACCGTTCCTGGAGATGTTTCTGCCATGGTCCCTGGTGGCATCAGAATGG : GAACTCCTGCACTCACTTCTCGGGGATTTCTTGAGGAAGATTTTGTTAAAGTTGCTGATTTCTTTGATGCTGCTGTGAAGATAGCAGTGAAAGTAAAGGCTGAAACTCAAG : GGACAAAGTTGAAAGACTTTGTATCAACACTAGAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAACTCCGTCAGGATGTGGAGGAGTATGCTAAGCAGTTCCCTACAATTGGGTTTGAGAAGGAAACCATGAAGTACAAAAACTAAGAGGTACATACACAAGGAACGTCATTGAG : GCACCTAATATCAAGCTTCAGAAAGGTGAAAGGGGAAGAAAATCCAACCATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</gDNA_template>
            <first_frame> N  G  Y  G  N  S  S  S  E  A  F  C  Y  N  *  Q  A  S  *  E  S  L  Q  W  R  L  Y  L  L  H   : V  I  T  A  *  *  S  C  I  R  Q  G  K  I  R  S  S   : L  A  K  A  T  E  C  S  T  R  G  C  *  S  *  D  C  *  H  Y  *  A  *  E  S  T  P  M  E   : G  A  R  T  H  S  I  R  K  F  H  F  R  F  G  D  A  S  S  W  I  S  H  D  *  Q  V  Q  *  R  I  S  W  C  Q  I  L  W  R  K  *  :  V  H  R  H  G  R  N  L  M  P  E  T  C  F  G  S  I  Q  V  G  S  C  K  M  G  S :   E  C  A  A  S  I  R  I  T  R  *  F  S  C  L  H  C  I  I  K  T  S  *  E  N  H  G  S  *  S  S  S  W  W  T  S  F  S  W  I  S   : D  *  Y  K  E  D  I  C  S  L  Y  I  L  *  D  N  A  I  Q  T  R  *  E  H  W  I  Y  *  L  *  P   : A  R  E  K  C  H  T  L  *  A  K  I  D  C  C  W  C  *  C  L  R  T  S  L  *  L  *  Q  N  P  E   : G  L  Q  Q  T  E  S  Y  F  V  S  R  Y  G  T  H  *  W  I  G  C  S  W  S  Y  P  I  T  I  *  L  C  *  C  C  H  Y  H  N  P  Q  V  P  S  W  P  S  W  C  Y  D  F  L  *  E  G  C  *  R  G  *  Q  A  R  Q  G   : G  F  L  R  L  *  R  Q  N  *  P  G  S  L  S  W  T  S  R  W  S  P  Q  S  H  H  H  W  I  G  S  C  L  E  T   : G  H  Y  S  R  I  Q  S  L  P  R  A  S  S  Q  Q  L  R  E  I  C  P   : G  F  R  G  E  G  L  *  T  C  L  W  R  N  *  *  S  L  G  F  G  E  H  E  K  Q   : G  Y  *  W  F  Q  G  *  K  S  L  G  S  C  T  Y  C  S  Q  Q  E  H  R  S  W  R  C  F  C  H  G  P  W  W  H  Q  N  G :   N  S  C  T  H  F  S  G  I  S  *  G  R  F  C  *  S  C  *  F  L  *  C  C  C  E  D  S  S  E  S  K  G  *  N  S  R :   D  K  V  E  R  L  C  I  N  T  R  I  Q  C  S  N  Q  V  *  N  C  K  T  P  S  G  C  G  G  V  C  *  A  V  P  Y  N  W  V  *  E  G  N  H  E  V  Q  K  L  R  G  T  Y  T  R  N  V  I  E  :  A  P  N  I  K  L  Q  K  G  E  R  G  R  K  S  N  H  E  L  L  S  S  T  C  S  H  A  Y  I  L  *  R  N  P  A  H  V  G  S  H  V  C  S  L  Y  I  N  H  L  Q  S  N  *  G  P  F  *  S  N  K  L  L  L  P  L  L  </first_frame>
            <second_frame>  M  A  M  A  I  A  L  R  R  L  S  A  T  I  D  K  P  V  K  S  L  Y  N  G  G  S  I  Y  Y  M  :  S  S  L  P  N  E  A  V  Y  D  K  E  K  S  G  V  A  :  W  P  K  Q  L  N  A  P  L  E  V  V  D  P  E  I  A  D  I  I  E  H  E  K  A  R  Q  W  K  :  G  L  E  L  I  P  S  E  N  F  T  S  V  S  V  M  Q  A  V  G  S  V  M  T  N  K  Y  S  E  G  Y  P  G  A  R  Y  Y  G  G  N  E :   Y  I  D  M  A  E  T  L  C  Q  K  R  A  L  E  A  F  R  L  D  P  A  K  W  G   : V  N  V  Q  P  L  S  G  S  P  A  N  F  H  V  Y  T  A  L  L  K  P  H  E  R  I  M  A  L  D  L  P  H  G  G  H  L  S  H  G  Y  Q  :  T  D  T  K  K  I  S  A  V  S  I  F  F  E  T  M  P  Y  R  L  D  E  S  T  G  Y  I  D  Y  D  Q  :  L  E  K  S  A  T  L  F  R  P  K  L  I  V  A  G  A  S  A  Y  A  R  L  Y  D  Y  D  R  I  R  K  :  V  C  N  K  Q  K  A  I  L  L  A  D  M  A  H  I  S  G  L  V  A  A  G  V  I  P  S  P  F  D  Y  A  D  V  V  T  T  T  T  H  K  S  L  R  G  P  R  G  A  M  I  F  Y  R  K  G  V  K  E  V  N  K  Q  G  K  E  :  V  F  Y  D  Y  E  D  K  I  N  Q  A  V  F  P  G  L  Q  G  G  P  H  N  H  T  I  T  G  L  A  V  A  L  K  Q  :  A  T  T  P  E  Y  R  A  Y  Q  E  Q  V  L  S  N  S  A  K  F  A  Q  :  A  L  E  E  K  G  Y  E  L  V  S  G  G  T  D  N  H  L  V  L  V  N  M  K  N  K  :  G  I  D  G  S  R  V  E  K  V  L  E  A  V  H  I  A  A  N  K  N  T  V  P  G  D  V  S  A  M  V  P  G  G  I  R  M   : G  T  P  A  L  T  S  R  G  F  L  E  E  D  F  V  K  V  A  D  F  F  D  A  A  V  K  I  A  V  K  V  K  A  E  T  Q   : G  T  K  L  K  D  F  V  S  T  L  E  S  S  A  P  I  K  S  E  I  A  K  L  R  Q  D  V  E  E  Y  A  K  Q  F  P  T  I  G  F  E  K  E  T  M  K  Y  K  N  *  E  V  H  T  Q  G  T  S  L  R :   H  L  I  S  S  F  R  K  V  K  G  E  E  N  P  T  M  N  C  F  Q  V  H  V  L  M  L  I  Y  C  K  E  I  Q  H  M  L  V  P  M  Y  A  V  C  I  L  I  T  Y  S  P  T  E  V  L  F  K  A  I  N  F  C  Y  L  C  * </second_frame>
            <third_frame>   W  L  W  Q  *  L  F  G  G  F  L  L  Q  L  T  S  Q  L  R  V  F  T  M  E  A  L  S  I  T  C :   H  H  C  L  M  K  L  Y  T  T  R  K  N  P  E  *  L :   G  Q  S  N  *  M  L  H  *  R  L  L  I  L  R  L  L  T  L  L  S  M  R  K  H  A  N  G  R :   G  S  N  S  F  H  Q  K  I  S  L  P  F  R  *  C  K  Q  L  D  Q  S  *  L  T  S  T  V  K  D  I  L  V  P  D  T  M  E  E  M   : S  T  *  T  W  Q  K  P  Y  A  R  N  V  L  W  K  H  S  G  W  I  L  Q  N  G  E  :  *  M  C  S  L  Y  Q  D  H  P  L  I  F  M  F  T  L  H  Y  *  N  L  M  R  E  S  W  L  L  I  F  L  M  V  D  I  F  L  M  D  I  R :   L  I  Q  R  R  Y  L  Q  S  L  Y  S  L  R  Q  C  H  T  D  S  M  R  A  L  D  I  L  T  M  T  S :   S  R  K  V  P  H  S  L  G  Q  N  *  L  L  L  V  L  V  P  T  H  V  F  M  T  M  T  E  S  G  R :   F  A  T  N  R  K  L  F  C  *  Q  I  W  H  T  L  V  D  W  L  Q  L  E  L  S  H  H  H  L  T  M  L  M  L  S  L  P  Q  P  T  S  P  F  V  A  L  V  V  L  *  F  F  I  G  R  V  L  K  R  L  T  S  K  A  R  R :   F  S  T  T  M  K  T  K  L  T  R  Q  S  F  L  D  F  K  V  V  P  T  I  T  P  S  L  D  W  Q  L  P  *  N  R :   P  L  L  Q  N  T  E  L  T  K  S  K  F  S  A  T  P  R  N  L  P  R :   L  *  R  R  R  A  M  N  L  S  L  E  E  L  I  I  T  W  F  W  *  T  *  K  T  R :   V  L  M  V  P  G  L  K  K  S  W  K  L  Y  I  L  Q  P  T  R  T  P  F  L  E  M  F  L  P  W  S  L  V  A  S  E  W  :  E  L  L  H  S  L  L  G  D  F  L  R  K  I  L  L  K  L  L  I  S  L  M  L  L  *  R  *  Q  *  K  *  R  L  K  L  K  :  G  Q  S  *  K  T  L  Y  Q  H  *  N  P  V  L  Q  S  S  L  K  L  Q  N  S  V  R  M  W  R  S  M  L  S  S  S  L  Q  L  G  L  R  R  K  P  *  S  T  K  T  K  R  Y  I  H  K  E  R  H  *   : G  T  *  Y  Q  A  S  E  R  *  K  G  K  K  I  Q  P  *  I  A  F  K  Y  M  F  S  C  L  Y  I  V  K  K  S  S  T  C  W  F  P  C  M  Q  F  V  Y  *  S  L  T  V  Q  L  R  S  F  L  K  Q  *  T  F  V  T  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60361" stop="60450"/>
                    <exon start="60545" stop="60595"/>
                    <exon start="60686" stop="60772"/>
                    <exon start="61580" stop="61701"/>
                    <exon start="61821" stop="61897"/>
                    <exon start="61986" stop="62110"/>
                    <exon start="62780" stop="62872"/>
                    <exon start="63388" stop="63480"/>
                    <exon start="63599" stop="63796"/>
                    <exon start="63928" stop="64032"/>
                    <exon start="64619" stop="64684"/>
                    <exon start="65130" stop="65207"/>
                    <exon start="65452" stop="65563"/>
                    <exon start="65644" stop="65754"/>
                    <exon start="66132" stop="66280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1554</number_coding_nucleotides>
                  <number_encoded_amino_acids>518</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAMAIALRRLSATIDKPVKSLYNGGSIYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSAKFAQALEEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVSTLESSAPIKSEIAKLRQDVEEYAKQFPTIGFEKETMKYKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66281" stop="66309"/>
                    <exon start="66655" stop="66853"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVHTQGTSLRHLISSFRKVKGEENPTMNCFQVHVLMLIYCKEIQHMLVPMYAVCILITYSPTEVLFKAINFCYLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60364" e_stop="60450"/>
            <exon e_start="60545" e_stop="60595"/>
            <exon e_start="60686" e_stop="60772"/>
            <exon e_start="61580" e_stop="61644"/>
            <exon e_start="66703" e_stop="66853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60364" e_stop="60450" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60451" i_stop="60544" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60545" e_stop="60595" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="60596" i_stop="60685" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60686" e_stop="60772" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.796">
            <gDNA_intron_boundary i_start="60773" i_stop="61579" i_length="807"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61580" e_stop="61644" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61645" i_stop="66702" i_length="5058"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66703" e_stop="66853" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60364" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61644"/>
              <exon start="66703" stop="66853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60450"/>
              <exon start="60545" stop="60595"/>
              <exon start="60686" stop="60772"/>
              <exon start="61580" stop="61627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTATGGCAATAGCTCTTCGGAGGCTTTCTGCTACAATTGACAAGCCAGTTAAGAGTCTTTACAATGGAGGCTCTATCTATTACATG : TCATCACTGCCTAATGAAGCTGTATACGACAAGGAAAAATCCGGAGTAGCT : TGGCCAAAGCAACTGAATGCTCCACTAGAGGTTGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCACGCCAATGGAAG : GGGCTCGAACTCATTCCATCAGAAAATTTCACTTCCGTTTCGGTGATGCAAGCAGTTGGATCAGT : CATGAATTGCTTTCAAGTACATGTTCTCATGCTTATATATTGTAAAGAAATCCAGCACATGTTGGTTCCCATGTATGCAGTTTGTATATTAATCACTTACAGTCCAACTGAGGTCCTTTTTAAAGCAATAAACTTTTGTTACCTTTGCTGA</gDNA_template>
            <first_frame> A  M  A  I  A  L  R  R  L  S  A  T  I  D  K  P  V  K  S  L  Y  N  G  G  S  I  Y  Y  M  :  S  S  L  P  N  E  A  V  Y  D  K  E  K  S  G  V  A  :  W  P  K  Q  L  N  A  P  L  E  V  V  D  P  E  I  A  D  I  I  E  H  E  K  A  R  Q  W  K  :  G  L  E  L  I  P  S  E  N  F  T  S  V  S  V  M  Q  A  V  G  S  V :   M  N  C  F  Q  V  H  V  L  M  L  I  Y  C  K  E  I  Q  H  M  L  V  P  M  Y  A  V  C  I  L  I  T  Y  S  P  T  E  V  L  F  K  A  I  N  F  C  Y  L  C  * </first_frame>
            <second_frame>  L  W  Q  *  L  F  G  G  F  L  L  Q  L  T  S  Q  L  R  V  F  T  M  E  A  L  S  I  T  C :   H  H  C  L  M  K  L  Y  T  T  R  K  N  P  E  *  L :   G  Q  S  N  *  M  L  H  *  R  L  L  I  L  R  L  L  T  L  L  S  M  R  K  H  A  N  G  R :   G  S  N  S  F  H  Q  K  I  S  L  P  F  R  *  C  K  Q  L  D  Q   : S  *  I  A  F  K  Y  M  F  S  C  L  Y  I  V  K  K  S  S  T  C  W  F  P  C  M  Q  F  V  Y  *  S  L  T  V  Q  L  R  S  F  L  K  Q  *  T  F  V  T  F  A   </second_frame>
            <third_frame>   Y  G  N  S  S  S  E  A  F  C  Y  N  *  Q  A  S  *  E  S  L  Q  W  R  L  Y  L  L  H   : V  I  T  A  *  *  S  C  I  R  Q  G  K  I  R  S  S   : L  A  K  A  T  E  C  S  T  R  G  C  *  S  *  D  C  *  H  Y  *  A  *  E  S  T  P  M  E   : G  A  R  T  H  S  I  R  K  F  H  F  R  F  G  D  A  S  S  W  I  S  :  H  E  L  L  S  S  T  C  S  H  A  Y  I  L  *  R  N  P  A  H  V  G  S  H  V  C  S  L  Y  I  N  H  L  Q  S  N  *  G  P  F  *  S  N  K  L  L  L  P  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60364" stop="60450"/>
                    <exon start="60545" stop="60595"/>
                    <exon start="60686" stop="60772"/>
                    <exon start="61580" stop="61644"/>
                    <exon start="66703" stop="66853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMAIALRRLSATIDKPVKSLYNGGSIYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMNCFQVHVLMLIYCKEIQHMLVPMYAVCILITYSPTEVLFKAINFCYLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="77290" PGL_stop="72102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77290" e_stop="77265"/>
            <exon e_start="77166" e_stop="76921"/>
            <exon e_start="76350" e_stop="76205"/>
            <exon e_start="75609" e_stop="75492"/>
            <exon e_start="74706" e_stop="74515"/>
            <exon e_start="73832" e_stop="73767"/>
            <exon e_start="73682" e_stop="73611"/>
            <exon e_start="73515" e_stop="73294"/>
            <exon e_start="72443" e_stop="72102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.601" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77290" e_stop="77265" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.908">
            <gDNA_intron_boundary i_start="77264" i_stop="77167" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77166" e_stop="76921" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="76920" i_stop="76351" i_length="570"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76350" e_stop="76205" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76204" i_stop="75610" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75609" e_stop="75492" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.814">
            <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74706" e_stop="74515" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73832" e_stop="73767" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73682" e_stop="73611" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73515" e_stop="73294" e_length="222"/>
          </exon>
          <intron i_serial="8" don_prob="0.601" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73293" i_stop="72444" i_length="850"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="72443" e_stop="72102" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77290" stop="77265"/>
              <exon start="77166" stop="76921"/>
              <exon start="76350" stop="76205"/>
              <exon start="75609" stop="75492"/>
              <exon start="74706" stop="74661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77001" stop="76921"/>
              <exon start="76350" stop="76205"/>
              <exon start="75609" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75584" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75581" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75576" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75571" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75571" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75571" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75571" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74688" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73294"/>
              <exon start="72443" stop="72183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGCCAGCTGATGGATTAGCTCCA : GTTTGGAACAATGATGTCCGGTTTTACCGTGTGAATGATTCCTCTGGAAGTCCTATTGCCTACTTCTATTTTGATCCATACTCTCGTCCATCTGAGAAACGTGGCGGTGCTTGGATGGATGAAGTTGTTAGCCGAAGCCGTGTATTATCACGAGATGGTTCGAATGCTAGATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAG : GTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAG : GGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG : TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG : TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG : GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG : GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATA : GATTTAGCAAGGAAACAAGTTCATTTGAAAAATCAGTAACAGATACGAAGGAAATTGAGGGATTGCCTGCCACCTCTCTTGGTTTGACTTCACATTGAAGCTCTCTTTGTGGGTGTTCGACAACTAAATTAACATTGATTTCTCTTTTGTGTTCTCTTTGCTGCCTGTAACTGATAACAGGGGCACAAAAATGCTACTGCAGAAGTCGGGCCATGGATGATTACATTTTGGATTTATACAGATTCACAAATACCGACTTCTGTTGGCTTTACTATTTCTGCAAAAACCACGGTAAAAAACTATGAATCCTACCACTTATGTCTCAGAGCAGGAGTTTATCTT</gDNA_template>
            <first_frame> L  S  Q  L  M  D  *  L  Q :   F  G  T  M  M  S  G  F  T  V  *  M  I  P  L  E  V  L  L  P  T  S  I  L  I  H  T  L  V  H  L  R  N  V  A  V  L  G  W  M  K  L  L  A  E  A  V  Y  Y  H  E  M  V  R  M  L  D  C  L  L  H  T  W  F  V  I  R  C  H  Q  L  G  I  N  P  A  *  *  H  S  V  R :   L  R  L  S  S  M  N  L  D  M  P  F  S  I  C  *  L  S  R  M  R  V  W  L  L  A  *  G  V  *  S  G  M  L  W  N  C  H  H  N  S  W  R  I  G  A  I  T   : G  I  L  *  W  V  L  L  S  I  M  K  L  E  R  H  S  Q  K  T  Y  T  R  S  F  L  L  L  K  L  S  V  L  V  P  *  V  F  G  S :   *  D  L  L  Q  L  I  L  S  Y  M  Q  N  M  F  R  V  V  R  N  Q  S  I  V  L  T  D  G  S  L  R  K  P  K  C  F  L  H  S  Q  T  I  S  S  L  P  V  S  V  T  F  L  L  V  D  M  L  L  D  T  T  V  T  S :   G  Q  R  F  C  L  Q  M  L  S  L  L  L  K  M  L  D  *  R  M  R  R :   L  *  K  K  Q  A  R  D  S  G  R  L  F  L  L  L  A  V  E  R  L  H  W  R :   F  S  C  N  L  E  D  G  N  L  L  Q  N  R  C  L  G  I  M  A  Y  L  P  L  L  H  E  D  C  C  R  T  I  R  D  N  C  N  C  I  C  F  Q  V  I  I  K  N  S  L  *  N  K  A  L  L  L  I  S  R  L  P  L  C  H  F  E  I  I  I  C  H  I  * :   I  *  Q  G  N  K  F  I  *  K  I  S  N  R  Y  E  G  N  *  G  I  A  C  H  L  S  W  F  D  F  T  L  K  L  S  L  W  V  F  D  N  *  I  N  I  D  F  S  F  V  F  S  L  L  P  V  T  D  N  R  G  T  K  M  L  L  Q  K  S  G  H  G  *  L  H  F  G  F  I  Q  I  H  K  Y  R  L  L  L  A  L  L  F  L  Q  K  P  R  *  K  T  M  N  P  T  T  Y  V  S  E  Q  E  F  I   </first_frame>
            <second_frame>  *  A  S  *  W  I  S  S   : S  L  E  Q  *  C  P  V  L  P  C  E  *  F  L  W  K  S  Y  C  L  L  L  F  *  S  I  L  S  S  I  *  E  T  W  R  C  L  D  G  *  S  C  *  P  K  P  C  I  I  T  R  W  F  E  C  *  I  A  C  C  T  H  G  L  *  S  D  A  T  S  W  G  *  T  Q  P  N  D  I  P  *   : G  *  D  C  L  P  *  I  W  T  C  P  S  A  Y  A  N  *  A  G  *  G  F  G  C  W  H  K  G  C  R  V  G  C  C  G  I  A  I  T  I  H  G  E  L  V  L  S  Q  :  G  Y  S  D  G  Y  C  *  A  S  *  N  W  R  D  T  P  R  R  H  I  Q  E  A  S  C  C  *  N  F  P  C  W  Y  L  K  S  S  A   : V  E  I  C  Y  S  *  S  *  V  T  C  K  I  C  S  G  W  F  G  I  N  L  L  C  *  P  T  G  L  *  E  N  P  S  A  S  S  T  P  R  R  *  V  P  C  Q  F  Q  S  H  F  C  W  W  I  C  C  W  I  L  Q  L  Q   : V  G  R  G  F  V  C  R  C  F  L  C  F  *  R  C  W  T  R  E  *  E   : G  C  K  R  N  R  P  E  I  Q  G  D  C  S  C  S  W  R  W  K  G  S  T  G   : G  F  R  A  I  *  R  T  G  T  F  S  R  T  A  A  *  A  *  W  P  T  Y  L  F  C  M  K  I  V  V  E  P  L  E  T  I  A  T  V  F  V  F  K  L  L  *  R  I  H  F  R  T  K  H  C  Y  *  F  L  V  S  L  Y  A  I  L  R  S  S  Y  A  I  Y   : R  F  S  K  E  T  S  S  F  E  K  S  V  T  D  T  K  E  I  E  G  L  P  A  T  S  L  G  L  T  S  H  *  S  S  L  C  G  C  S  T  T  K  L  T  L  I  S  L  L  C  S  L  C  C  L  *  L  I  T  G  A  Q  K  C  Y  C  R  S  R  A  M  D  D  Y  I  L  D  L  Y  R  F  T  N  T  D  F  C  W  L  Y  Y  F  C  K  N  H  G  K  K  L  *  I  L  P  L  M  S  Q  S  R  S  L  S  </second_frame>
            <third_frame>   E  P  A  D  G  L  A  P  :  V  W  N  N  D  V  R  F  Y  R  V  N  D  S  S  G  S  P  I  A  Y  F  Y  F  D  P  Y  S  R  P  S  E  K  R  G  G  A  W  M  D  E  V  V  S  R  S  R  V  L  S  R  D  G  S  N  A  R  L  P  V  A  H  M  V  C  N  Q  M  P  P  V  G  D  K  P  S  L  M  T  F  R  E  :  V  E  T  V  F  H  E  F  G  H  A  L  Q  H  M  L  T  K  Q  D  E  G  L  V  A  G  I  R  G  V  E  W  D  A  V  E  L  P  S  Q  F  M  E  N  W  C  Y  H  R :   D  T  L  M  G  I  A  K  H  H  E  T  G  E  T  L  P  E  D  I  Y  K  K  L  L  A  A  K  T  F  R  A  G  T  L  S  L  R  Q  :  L  R  F  A  T  V  D  L  E  L  H  A  K  Y  V  P  G  G  S  E  S  I  Y  C  V  D  R  R  V  S  K  K  T  Q  V  L  P  P  L  P  D  D  K  F  L  A  S  F  S  H  I  F  A  G  G  Y  A  A  G  Y  Y  S  Y  K  :  W  A  E  V  L  S  A  D  A  F  S  A  F  E  D  V  G  L  E  N  E  K  :  A  V  K  E  T  G  Q  R  F  R  E  T  V  L  A  L  G  G  G  K  A  P  L  E  :  V  F  V  Q  F  R  G  R  E  P  S  P  E  P  L  L  R  H  N  G  L  L  T  S  S  A  *  R  L  L  *  N  H  *  R  Q  L  Q  L  Y  L  F  S  S  Y  Y  K  E  F  T  L  E  Q  S  I  A  T  D  F  S  S  P  F  M  P  F  *  D  H  H  M  P  Y  I  :  D  L  A  R  K  Q  V  H  L  K  N  Q  *  Q  I  R  R  K  L  R  D  C  L  P  P  L  L  V  *  L  H  I  E  A  L  F  V  G  V  R  Q  L  N  *  H  *  F  L  F  C  V  L  F  A  A  C  N  *  *  Q  G  H  K  N  A  T  A  E  V  G  P  W  M  I  T  F  W  I  Y  T  D  S  Q  I  P  T  S  V  G  F  T  I  S  A  K  T  T  V  K  N  Y  E  S  Y  H  L  C  L  R  A  G  V  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77288" stop="77265"/>
                    <exon start="77166" stop="76921"/>
                    <exon start="76350" stop="76205"/>
                    <exon start="75609" stop="75492"/>
                    <exon start="74706" stop="74515"/>
                    <exon start="73832" stop="73767"/>
                    <exon start="73682" stop="73611"/>
                    <exon start="73515" stop="73435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPADGLAPVWNNDVRFYRVNDSSGSPIAYFYFDPYSRPSEKRGGAWMDEVVSRSRVLSRDGSNARLPVAHMVCNQMPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGIAKHHETGETLPEDIYKKLLAAKTFRAGTLSLRQLRFATVDLELHAKYVPGGSESIYCVDRRVSKKTQVLPPLPDDKFLASFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDVGLENEKAVKETGQRFRETVLALGGGKAPLEVFVQFRGREPSPEPLLRHNGLLTSSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77290" e_stop="77265"/>
            <exon e_start="77166" e_stop="76921"/>
            <exon e_start="76350" e_stop="76205"/>
            <exon e_start="75609" e_stop="75492"/>
            <exon e_start="74706" e_stop="74515"/>
            <exon e_start="73832" e_stop="73767"/>
            <exon e_start="73682" e_stop="73611"/>
            <exon e_start="73515" e_stop="73236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77290" e_stop="77265" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.908">
            <gDNA_intron_boundary i_start="77264" i_stop="77167" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77166" e_stop="76921" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="76920" i_stop="76351" i_length="570"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76350" e_stop="76205" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76204" i_stop="75610" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75609" e_stop="75492" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.814">
            <gDNA_intron_boundary i_start="75491" i_stop="74707" i_length="785"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74706" e_stop="74515" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="74514" i_stop="73833" i_length="682"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73832" e_stop="73767" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73766" i_stop="73683" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73682" e_stop="73611" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73610" i_stop="73516" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="73515" e_stop="73236" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77290" stop="77265"/>
              <exon start="77166" stop="76921"/>
              <exon start="76350" stop="76205"/>
              <exon start="75609" stop="75492"/>
              <exon start="74706" stop="74661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77001" stop="76921"/>
              <exon start="76350" stop="76205"/>
              <exon start="75609" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75584" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75581" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75576" stop="75492"/>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74706" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74569" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74531" stop="74515"/>
              <exon start="73832" stop="73767"/>
              <exon start="73682" stop="73611"/>
              <exon start="73515" stop="73275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73470" stop="73259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGCCAGCTGATGGATTAGCTCCA : GTTTGGAACAATGATGTCCGGTTTTACCGTGTGAATGATTCCTCTGGAAGTCCTATTGCCTACTTCTATTTTGATCCATACTCTCGTCCATCTGAGAAACGTGGCGGTGCTTGGATGGATGAAGTTGTTAGCCGAAGCCGTGTATTATCACGAGATGGTTCGAATGCTAGATTGCCTGTTGCACACATGGTTTGTAATCAGATGCCACCAGTTGGGGATAAACCCAGCCTAATGACATTCCGTGAG : GTTGAGACTGTCTTCCATGAATTTGGACATGCCCTTCAGCATATGCTAACTAAGCAGGATGAGGGTTTGGTTGCTGGCATAAGGGGTGTAGAGTGGGATGCTGTGGAATTGCCATCACAATTCATGGAGAATTGGTGCTATCACAG : GGATACTCTGATGGGTATTGCTAAGCATCATGAAACTGGAGAGACACTCCCAGAAGACATATACAAGAAGCTTCTTGCTGCTAAAACTTTCCGTGCTGGTACCTTAAGTCTTCGGCAG : TTGAGATTTGCTACAGTTGATCTTGAGTTACATGCAAAATATGTTCCGGGTGGTTCGGAATCAATCTATTGTGTTGACCGACGGGTCTCTAAGAAAACCCAAGTGCTTCCTCCACTCCCAGACGATAAGTTCCTTGCCAGTTTCAGTCACATTTTTGCTGGTGGATATGCTGCTGGATACTACAGTTACAAG : TGGGCAGAGGTTTTGTCTGCAGATGCTTTCTCTGCTTTTGAAGATGTTGGACTAGAGAATGAGAAG : GCTGTAAAAGAAACAGGCCAGAGATTCAGGGAGACTGTTCTTGCTCTTGGCGGTGGAAAGGCTCCACTGGAG : GTTTTCGTGCAATTTAGAGGACGGGAACCTTCTCCAGAACCGCTGCTTAGGCATAATGGCCTACTTACCTCTTCTGCATGAAGATTGTTGTAGAACCATTAGAGACAATTGCAACTGTATTTGTTTTCAAGTTATTATAAAGAATTCACTTTAGAACAAAGCATTGCTACTGATTTCTCGTCTCCCTTTATGCCATTTTGAGATCATCATATGCCATATATAGTAAGTGCACCGTTCTTTTTGGATGTTCTCTTCCAGGAAAATTTTGCTATATTGTTTC</gDNA_template>
            <first_frame> L  S  Q  L  M  D  *  L  Q :   F  G  T  M  M  S  G  F  T  V  *  M  I  P  L  E  V  L  L  P  T  S  I  L  I  H  T  L  V  H  L  R  N  V  A  V  L  G  W  M  K  L  L  A  E  A  V  Y  Y  H  E  M  V  R  M  L  D  C  L  L  H  T  W  F  V  I  R  C  H  Q  L  G  I  N  P  A  *  *  H  S  V  R :   L  R  L  S  S  M  N  L  D  M  P  F  S  I  C  *  L  S  R  M  R  V  W  L  L  A  *  G  V  *  S  G  M  L  W  N  C  H  H  N  S  W  R  I  G  A  I  T   : G  I  L  *  W  V  L  L  S  I  M  K  L  E  R  H  S  Q  K  T  Y  T  R  S  F  L  L  L  K  L  S  V  L  V  P  *  V  F  G  S :   *  D  L  L  Q  L  I  L  S  Y  M  Q  N  M  F  R  V  V  R  N  Q  S  I  V  L  T  D  G  S  L  R  K  P  K  C  F  L  H  S  Q  T  I  S  S  L  P  V  S  V  T  F  L  L  V  D  M  L  L  D  T  T  V  T  S :   G  Q  R  F  C  L  Q  M  L  S  L  L  L  K  M  L  D  *  R  M  R  R :   L  *  K  K  Q  A  R  D  S  G  R  L  F  L  L  L  A  V  E  R  L  H  W  R :   F  S  C  N  L  E  D  G  N  L  L  Q  N  R  C  L  G  I  M  A  Y  L  P  L  L  H  E  D  C  C  R  T  I  R  D  N  C  N  C  I  C  F  Q  V  I  I  K  N  S  L  *  N  K  A  L  L  L  I  S  R  L  P  L  C  H  F  E  I  I  I  C  H  I  *  *  V  H  R  S  F  W  M  F  S  S  R  K  I  L  L  Y  C  F </first_frame>
            <second_frame>  *  A  S  *  W  I  S  S   : S  L  E  Q  *  C  P  V  L  P  C  E  *  F  L  W  K  S  Y  C  L  L  L  F  *  S  I  L  S  S  I  *  E  T  W  R  C  L  D  G  *  S  C  *  P  K  P  C  I  I  T  R  W  F  E  C  *  I  A  C  C  T  H  G  L  *  S  D  A  T  S  W  G  *  T  Q  P  N  D  I  P  *   : G  *  D  C  L  P  *  I  W  T  C  P  S  A  Y  A  N  *  A  G  *  G  F  G  C  W  H  K  G  C  R  V  G  C  C  G  I  A  I  T  I  H  G  E  L  V  L  S  Q  :  G  Y  S  D  G  Y  C  *  A  S  *  N  W  R  D  T  P  R  R  H  I  Q  E  A  S  C  C  *  N  F  P  C  W  Y  L  K  S  S  A   : V  E  I  C  Y  S  *  S  *  V  T  C  K  I  C  S  G  W  F  G  I  N  L  L  C  *  P  T  G  L  *  E  N  P  S  A  S  S  T  P  R  R  *  V  P  C  Q  F  Q  S  H  F  C  W  W  I  C  C  W  I  L  Q  L  Q   : V  G  R  G  F  V  C  R  C  F  L  C  F  *  R  C  W  T  R  E  *  E   : G  C  K  R  N  R  P  E  I  Q  G  D  C  S  C  S  W  R  W  K  G  S  T  G   : G  F  R  A  I  *  R  T  G  T  F  S  R  T  A  A  *  A  *  W  P  T  Y  L  F  C  M  K  I  V  V  E  P  L  E  T  I  A  T  V  F  V  F  K  L  L  *  R  I  H  F  R  T  K  H  C  Y  *  F  L  V  S  L  Y  A  I  L  R  S  S  Y  A  I  Y  S  K  C  T  V  L  F  G  C  S  L  P  G  K  F  C  Y  I  V   </second_frame>
            <third_frame>   E  P  A  D  G  L  A  P  :  V  W  N  N  D  V  R  F  Y  R  V  N  D  S  S  G  S  P  I  A  Y  F  Y  F  D  P  Y  S  R  P  S  E  K  R  G  G  A  W  M  D  E  V  V  S  R  S  R  V  L  S  R  D  G  S  N  A  R  L  P  V  A  H  M  V  C  N  Q  M  P  P  V  G  D  K  P  S  L  M  T  F  R  E  :  V  E  T  V  F  H  E  F  G  H  A  L  Q  H  M  L  T  K  Q  D  E  G  L  V  A  G  I  R  G  V  E  W  D  A  V  E  L  P  S  Q  F  M  E  N  W  C  Y  H  R :   D  T  L  M  G  I  A  K  H  H  E  T  G  E  T  L  P  E  D  I  Y  K  K  L  L  A  A  K  T  F  R  A  G  T  L  S  L  R  Q  :  L  R  F  A  T  V  D  L  E  L  H  A  K  Y  V  P  G  G  S  E  S  I  Y  C  V  D  R  R  V  S  K  K  T  Q  V  L  P  P  L  P  D  D  K  F  L  A  S  F  S  H  I  F  A  G  G  Y  A  A  G  Y  Y  S  Y  K  :  W  A  E  V  L  S  A  D  A  F  S  A  F  E  D  V  G  L  E  N  E  K  :  A  V  K  E  T  G  Q  R  F  R  E  T  V  L  A  L  G  G  G  K  A  P  L  E  :  V  F  V  Q  F  R  G  R  E  P  S  P  E  P  L  L  R  H  N  G  L  L  T  S  S  A  *  R  L  L  *  N  H  *  R  Q  L  Q  L  Y  L  F  S  S  Y  Y  K  E  F  T  L  E  Q  S  I  A  T  D  F  S  S  P  F  M  P  F  *  D  H  H  M  P  Y  I  V  S  A  P  F  F  L  D  V  L  F  Q  E  N  F  A  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77288" stop="77265"/>
                    <exon start="77166" stop="76921"/>
                    <exon start="76350" stop="76205"/>
                    <exon start="75609" stop="75492"/>
                    <exon start="74706" stop="74515"/>
                    <exon start="73832" stop="73767"/>
                    <exon start="73682" stop="73611"/>
                    <exon start="73515" stop="73435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPADGLAPVWNNDVRFYRVNDSSGSPIAYFYFDPYSRPSEKRGGAWMDEVVSRSRVLSRDGSNARLPVAHMVCNQMPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGIAKHHETGETLPEDIYKKLLAAKTFRAGTLSLRQLRFATVDLELHAKYVPGGSESIYCVDRRVSKKTQVLPPLPDDKFLASFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDVGLENEKAVKETGQRFRETVLALGGGKAPLEVFVQFRGREPSPEPLLRHNGLLTSSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="81401" PGL_stop="78509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81401" e_stop="81082"/>
            <exon e_start="81010" e_stop="80843"/>
            <exon e_start="80289" e_stop="80166"/>
            <exon e_start="79698" e_stop="79622"/>
            <exon e_start="79161" e_stop="79018"/>
            <exon e_start="78918" e_stop="78688"/>
            <exon e_start="78599" e_stop="78509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.591" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81401" e_stop="81082" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="81081" i_stop="81011" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81010" e_stop="80843" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.866">
            <gDNA_intron_boundary i_start="80842" i_stop="80290" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80289" e_stop="80166" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80165" i_stop="79699" i_length="467"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79698" e_stop="79622" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79621" i_stop="79162" i_length="460"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79161" e_stop="79018" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.591" acc_prob="0.977">
            <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78918" e_stop="78688" e_length="231"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78687" i_stop="78600" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78599" e_stop="78509" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81401" stop="81082"/>
              <exon start="81010" stop="80843"/>
              <exon start="80289" stop="80166"/>
              <exon start="79698" stop="79622"/>
              <exon start="79161" stop="79018"/>
              <exon start="78918" stop="78862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81394" stop="81082"/>
              <exon start="81010" stop="80843"/>
              <exon start="80289" stop="80166"/>
              <exon start="79698" stop="79643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79161" stop="79018"/>
              <exon start="78918" stop="78688"/>
              <exon start="78599" stop="78509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79148" stop="79018"/>
              <exon start="78918" stop="78688"/>
              <exon start="78599" stop="78516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCAGCTCGCCTTTGCTTAAGACCCACTTCTACTTTTTCACGTTTATCTACCAAAAACCTACTTCAGTGTCCGTCTTGTCCCCTCTGGTCATCCTCTTTCTCTCTCTGTCTTCACACTTTCCGCAAGTCAACTTCTCCCGGTAAATCCATCACCGTCCGATCATTTTCTCCATCGTCGGCATCCATTTCCGACCATCCTTCTAAAATGTCGATGGCTTCTGATGACAATCCTTTGTTGAAGGACTTTGATTTCCCACCATTCGATGTAATCGAAGCCAAGCACGTCCGTCCTGGAATTCGTGCCTTGCTTAACAAAATA : GAGGAGGAATTGAGCGCTTTGGAGAAGAGTGTGGAGCCTACCTGGCCCAAGCTGGCGGAGCCATTGGAGAAGATCATTGATAGATTGACGGTTGTTTGGGGTGCGGTGAATCATCTCAAGTCCGTCAAAGATAATCCTGAACTTCGTTCCGCTCTTGAAGAAGTTCAG : CCAGAAAAAGTTGCTTTTCAGCTTAAATTGGGTCAGAGTAAGCCAATCTATAATGCATTCAAAGCCATCCGAGAGTCACCTGAGTGGGACTCTTTGAGTGATGCTCGTAAACGAATAGTTGAAT : CGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAG : GATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAG : GGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAG : GTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCAGTTAAAG</gDNA_template>
            <first_frame> V  Q  L  A  F  A  *  D  P  L  L  L  F  H  V  Y  L  P  K  T  Y  F  S  V  R  L  V  P  S  G  H  P  L  S  L  S  V  F  T  L  S  A  S  Q  L  L  P  V  N  P  S  P  S  D  H  F  L  H  R  R  H  P  F  P  T  I  L  L  K  C  R  W  L  L  M  T  I  L  C  *  R  T  L  I  S  H  H  S  M  *  S  K  P  S  T  S  V  L  E  F  V  P  C  L  T  K  * :   R  R  N  *  A  L  W  R  R  V  W  S  L  P  G  P  S  W  R  S  H  W  R  R  S  L  I  D  *  R  L  F  G  V  R  *  I  I  S  S  P  S  K  I  I  L  N  F  V  P  L  L  K  K  F  S :   Q  K  K  L  L  F  S  L  N  W  V  R  V  S  Q  S  I  M  H  S  K  P  S  E  S  H  L  S  G  T  L  *  V  M  L  V  N  E  *  L  N  :  R  K  *  R  R  L  Y  L  V  V  S  L  L  R  M  I  K  E  S  N  L  T  R  L  N  R :   I  *  Q  S  Y  L  R  N  L  M  K  M  F  *  I  P  P  R  S  L  K  N  *  *  *  I  R  R  I  L  T  D  Y  L  P  H  L  L  V  W  L  H  R  Q  Q  C  L  R :   G  T  K  M  L  L  Q  K  T  G  H  G  S  S  H  W  M  R  Q  V  I  C  L  *  F  N  M  Q  R  I  E  L  L  E  K  R  C  T  V  L  V  *  I  V  L  L  V  E  T  L  I  T  L  R  *  L  T  K  F  *  S  L  D  W  K  R  L  S  S  L  D  T  I  T  M  L  R :   *  A  W  R  *  K  W  P  L  L  K  K  P  K  S  F  *  K  S  F  V  V  L  L  G  I  L  Q  L  K </first_frame>
            <second_frame>  F  S  S  P  L  L  K  T  H  F  Y  F  F  T  F  I  Y  Q  K  P  T  S  V  S  V  L  S  P  L  V  I  L  F  L  S  L  S  S  H  F  P  Q  V  N  F  S  R  *  I  H  H  R  P  I  I  F  S  I  V  G  I  H  F  R  P  S  F  *  N  V  D  G  F  *  *  Q  S  F  V  E  G  L  *  F  P  T  I  R  C  N  R  S  Q  A  R  P  S  W  N  S  C  L  A  *  Q  N   : R  G  G  I  E  R  F  G  E  E  C  G  A  Y  L  A  Q  A  G  G  A  I  G  E  D  H  *  *  I  D  G  C  L  G  C  G  E  S  S  Q  V  R  Q  R  *  S  *  T  S  F  R  S  *  R  S  S   : A  R  K  S  C  F  S  A  *  I  G  S  E  *  A  N  L  *  C  I  Q  S  H  P  R  V  T  *  V  G  L  F  E  *  C  S  *  T  N  S  *  I :   A  N  K  G  G  C  T  *  W  Y  R  S  *  G  *  S  K  R  A  I  *  Q  D  *  T   : G  F  S  K  A  I  S  E  I  *  *  K  C  F  R  F  H  Q  E  V  *  K  I  N  N  R  *  E  G  Y  *  R  I  T  C  H  I  S  W  F  G  C  T  D  S  S  V  *   : G  A  R  K  C  Y  C  R  R  R  A  M  D  H  H  I  G  C  A  K  L  Y  V  C  D  S  T  C  K  E  *  N  S  *  R  R  G  V  P  C  L  Y  K  S  C  F  *  W  R  P  *  *  H  *  D  N  *  P  N  S  K  A  *  I  G  K  G  *  A  P  W  I  Q  *  L  C  *   : G  K  H  G  D  E  N  G  H  C  *  K  S  R  R  A  F  R  K  A  S  *  C  F  L  G  S  C  S  *   </second_frame>
            <third_frame>   S  A  R  L  C  L  R  P  T  S  T  F  S  R  L  S  T  K  N  L  L  Q  C  P  S  C  P  L  W  S  S  S  F  S  L  C  L  H  T  F  R  K  S  T  S  P  G  K  S  I  T  V  R  S  F  S  P  S  S  A  S  I  S  D  H  P  S  K  M  S  M  A  S  D  D  N  P  L  L  K  D  F  D  F  P  P  F  D  V  I  E  A  K  H  V  R  P  G  I  R  A  L  L  N  K  I  :  E  E  E  L  S  A  L  E  K  S  V  E  P  T  W  P  K  L  A  E  P  L  E  K  I  I  D  R  L  T  V  V  W  G  A  V  N  H  L  K  S  V  K  D  N  P  E  L  R  S  A  L  E  E  V  Q  :  P  E  K  V  A  F  Q  L  K  L  G  Q  S  K  P  I  Y  N  A  F  K  A  I  R  E  S  P  E  W  D  S  L  S  D  A  R  K  R  I  V  E   : S  Q  I  K  E  A  V  L  S  G  I  A  L  E  D  D  Q  R  E  Q  F  N  K  I  E  Q  :  D  L  A  K  L  S  Q  K  F  D  E  N  V  L  D  S  T  K  K  F  E  K  L  I  I  D  K  K  D  I  D  G  L  P  A  T  S  L  G  L  A  A  Q  T  A  V  S  K  :  G  H  E  N  A  T  A  E  D  G  P  W  I  I  T  L  D  A  P  S  Y  M  S  V  I  Q  H  A  K  N  R  T  L  R  E  E  V  Y  R  A  C  I  N  R  A  S  S  G  D  L  D  N  T  E  I  I  N  Q  I  L  K  L  R  L  E  K  A  K  L  L  G  Y  N  N  Y  A  E  :  V  S  M  A  M  K  M  A  T  V  E  K  A  E  E  L  L  E  K  L  R  S  A  S  W  D  P  A  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81399" stop="81082"/>
                    <exon start="81010" stop="80843"/>
                    <exon start="80289" stop="80166"/>
                    <exon start="79698" stop="79622"/>
                    <exon start="79161" stop="79018"/>
                    <exon start="78918" stop="78688"/>
                    <exon start="78599" stop="78510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SARLCLRPTSTFSRLSTKNLLQCPSCPLWSSSFSLCLHTFRKSTSPGKSITVRSFSPSSASISDHPSKMSMASDDNPLLKDFDFPPFDVIEAKHVRPGIRALLNKIEEELSALEKSVEPTWPKLAEPLEKIIDRLTVVWGAVNHLKSVKDNPELRSALEEVQPEKVAFQLKLGQSKPIYNAFKAIRESPEWDSLSDARKRIVESQIKEAVLSGIALEDDQREQFNKIEQDLAKLSQKFDENVLDSTKKFEKLIIDKKDIDGLPATSLGLAAQTAVSKGHENATAEDGPWIITLDAPSYMSVIQHAKNRTLREEVYRACINRASSGDLDNTEIINQILKLRLEKAKLLGYNNYAEVSMAMKMATVEKAEELLEKLRSASWDPAVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79704" e_stop="79622"/>
            <exon e_start="79161" e_stop="79018"/>
            <exon e_start="78918" e_stop="78688"/>
            <exon e_start="78599" e_stop="78509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.928"/>
          <exon-intron don_prob="0.591" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="79704" e_stop="79622" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79621" i_stop="79162" i_length="460"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79161" e_stop="79018" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.591" acc_prob="0.977">
            <gDNA_intron_boundary i_start="79017" i_stop="78919" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78918" e_stop="78688" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78687" i_stop="78600" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78599" e_stop="78509" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79704" stop="79622"/>
              <exon start="79161" stop="79018"/>
              <exon start="78918" stop="78812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79161" stop="79018"/>
              <exon start="78918" stop="78688"/>
              <exon start="78599" stop="78509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79148" stop="79018"/>
              <exon start="78918" stop="78688"/>
              <exon start="78599" stop="78516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCAGCGCAAATAAAGGAGGCTGTACTTAGTGGTATCGCTCTTGAGGATGATCAAAGAGAGCAATTTAACAAGATTGAACAG : GATTTAGCAAAGCTATCTCAGAAATTTGATGAAAATGTTTTAGATTCCACCAAGAAGTTTGAAAAATTAATAATAGATAAGAAGGATATTGACGGATTACCTGCCACATCTCTTGGTTTGGCTGCACAGACAGCAGTGTCTAAG : GGGCACGAAAATGCTACTGCAGAAGACGGGCCATGGATCATCACATTGGATGCGCCAAGTTATATGTCTGTGATTCAACATGCAAAGAATAGAACTCTTAGAGAAGAGGTGTACCGTGCTTGTATAAATCGTGCTTCTAGTGGAGACCTTGATAACACTGAGATAATTAACCAAATTCTAAAGCTTAGATTGGAAAAGGCTAAGCTCCTTGGATACAATAACTATGCTGAG : GTAAGCATGGCGATGAAAATGGCCACTGTTGAAAAAGCCGAAGAGCTTTTAGAAAAGCTTCGTAGTGCTTCTTGGGATCCTGCAGTTAAAG</gDNA_template>
            <first_frame> V  Q  R  K  *  R  R  L  Y  L  V  V  S  L  L  R  M  I  K  E  S  N  L  T  R  L  N  R :   I  *  Q  S  Y  L  R  N  L  M  K  M  F  *  I  P  P  R  S  L  K  N  *  *  *  I  R  R  I  L  T  D  Y  L  P  H  L  L  V  W  L  H  R  Q  Q  C  L  R :   G  T  K  M  L  L  Q  K  T  G  H  G  S  S  H  W  M  R  Q  V  I  C  L  *  F  N  M  Q  R  I  E  L  L  E  K  R  C  T  V  L  V  *  I  V  L  L  V  E  T  L  I  T  L  R  *  L  T  K  F  *  S  L  D  W  K  R  L  S  S  L  D  T  I  T  M  L  R :   *  A  W  R  *  K  W  P  L  L  K  K  P  K  S  F  *  K  S  F  V  V  L  L  G  I  L  Q  L  K </first_frame>
            <second_frame>  C  S  A  N  K  G  G  C  T  *  W  Y  R  S  *  G  *  S  K  R  A  I  *  Q  D  *  T   : G  F  S  K  A  I  S  E  I  *  *  K  C  F  R  F  H  Q  E  V  *  K  I  N  N  R  *  E  G  Y  *  R  I  T  C  H  I  S  W  F  G  C  T  D  S  S  V  *   : G  A  R  K  C  Y  C  R  R  R  A  M  D  H  H  I  G  C  A  K  L  Y  V  C  D  S  T  C  K  E  *  N  S  *  R  R  G  V  P  C  L  Y  K  S  C  F  *  W  R  P  *  *  H  *  D  N  *  P  N  S  K  A  *  I  G  K  G  *  A  P  W  I  Q  *  L  C  *   : G  K  H  G  D  E  N  G  H  C  *  K  S  R  R  A  F  R  K  A  S  *  C  F  L  G  S  C  S  *   </second_frame>
            <third_frame>   A  A  Q  I  K  E  A  V  L  S  G  I  A  L  E  D  D  Q  R  E  Q  F  N  K  I  E  Q  :  D  L  A  K  L  S  Q  K  F  D  E  N  V  L  D  S  T  K  K  F  E  K  L  I  I  D  K  K  D  I  D  G  L  P  A  T  S  L  G  L  A  A  Q  T  A  V  S  K  :  G  H  E  N  A  T  A  E  D  G  P  W  I  I  T  L  D  A  P  S  Y  M  S  V  I  Q  H  A  K  N  R  T  L  R  E  E  V  Y  R  A  C  I  N  R  A  S  S  G  D  L  D  N  T  E  I  I  N  Q  I  L  K  L  R  L  E  K  A  K  L  L  G  Y  N  N  Y  A  E  :  V  S  M  A  M  K  M  A  T  V  E  K  A  E  E  L  L  E  K  L  R  S  A  S  W  D  P  A  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79702" stop="79622"/>
                    <exon start="79161" stop="79018"/>
                    <exon start="78918" stop="78688"/>
                    <exon start="78599" stop="78510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAQIKEAVLSGIALEDDQREQFNKIEQDLAKLSQKFDENVLDSTKKFEKLIIDKKDIDGLPATSLGLAAQTAVSKGHENATAEDGPWIITLDAPSYMSVIQHAKNRTLREEVYRACINRASSGDLDNTEIINQILKLRLEKAKLLGYNNYAEVSMAMKMATVEKAEELLEKLRSASWDPAVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="93897" PGL_stop="87757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93897" e_stop="93545"/>
            <exon e_start="93051" e_stop="92535"/>
            <exon e_start="92410" e_stop="91932"/>
            <exon e_start="91830" e_stop="91680"/>
            <exon e_start="91519" e_stop="91448"/>
            <exon e_start="91345" e_stop="91277"/>
            <exon e_start="91078" e_stop="91007"/>
            <exon e_start="90845" e_stop="90667"/>
            <exon e_start="90373" e_stop="90147"/>
            <exon e_start="89789" e_stop="89663"/>
            <exon e_start="89576" e_stop="89508"/>
            <exon e_start="89266" e_stop="89077"/>
            <exon e_start="88819" e_stop="88687"/>
            <exon e_start="88374" e_stop="87757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.282" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.235" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.151" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.406" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.722" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93897" e_stop="93545" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.945">
            <gDNA_intron_boundary i_start="93544" i_stop="93052" i_length="493"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93051" e_stop="92535" e_length="517"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92534" i_stop="92411" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92410" e_stop="91932" e_length="479"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.949">
            <gDNA_intron_boundary i_start="91931" i_stop="91831" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91830" e_stop="91680" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.282">
            <gDNA_intron_boundary i_start="91679" i_stop="91520" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91519" e_stop="91448" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.235">
            <gDNA_intron_boundary i_start="91447" i_stop="91346" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91345" e_stop="91277" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91276" i_stop="91079" i_length="198"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91078" e_stop="91007" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.151" acc_prob="0.941">
            <gDNA_intron_boundary i_start="91006" i_stop="90846" i_length="161"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90845" e_stop="90667" e_length="179"/>
          </exon>
          <intron i_serial="8" don_prob="0.946" acc_prob="0.830">
            <gDNA_intron_boundary i_start="90666" i_stop="90374" i_length="293"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90373" e_stop="90147" e_length="227"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.970">
            <gDNA_intron_boundary i_start="90146" i_stop="89790" i_length="357"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89789" e_stop="89663" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="0.406" acc_prob="0.993">
            <gDNA_intron_boundary i_start="89662" i_stop="89577" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89576" e_stop="89508" e_length="69"/>
          </exon>
          <intron i_serial="11" don_prob="0.840" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89507" i_stop="89267" i_length="241"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="89266" e_stop="89077" e_length="190"/>
          </exon>
          <intron i_serial="12" don_prob="0.962" acc_prob="0.722">
            <gDNA_intron_boundary i_start="89076" i_stop="88820" i_length="257"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="88819" e_stop="88687" e_length="133"/>
          </exon>
          <intron i_serial="13" don_prob="0.864" acc_prob="0.992">
            <gDNA_intron_boundary i_start="88686" i_stop="88375" i_length="312"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="88374" e_stop="87757" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93897" stop="93545"/>
              <exon start="93051" stop="92535"/>
              <exon start="92410" stop="91932"/>
              <exon start="91830" stop="91680"/>
              <exon start="91519" stop="91448"/>
              <exon start="91345" stop="91277"/>
              <exon start="91078" stop="91007"/>
              <exon start="90845" stop="90667"/>
              <exon start="90373" stop="90147"/>
              <exon start="89789" stop="89663"/>
              <exon start="89576" stop="89508"/>
              <exon start="89266" stop="89077"/>
              <exon start="88819" stop="88687"/>
              <exon start="88374" stop="87757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTTAGTTTTTACCTAGTAATGCTTCAAAAATTGAAACCATTGGAAGTCATAAGTCCCAGTTTGCTGGTATCTGCAAAACCTATCTTGTTCCCTCCTACCTATTTTCGCTTTTTAATCAGTTTTTCATTTTAAAATTACAGAAAATCATGAGTTGGAAATTGGATTTTGTAGATAACCAAAGTTTAATGAGATAGGCATAGTCAGGTTTTGAGTTGGGATGACCTGATAGGGCAATTTTCTTCCATGAGAATAGGCTGATGGAAGTAGATAATTGCTGGAACATAAGGTTGGTCAACTGTGTTATCATCTGCCTGGTGATATATATACAATCTGCCTTTGCACAAGAAG : GATTTCTAAGTATTCAGTGCTGTGCTACTGCAAACTTTACGGAACCACGTACCAACTTAAGTTGGATTTCAGATGGAATTTGGTTCCCTGAAAATCAGAGTTGCATATCAAGGCCAGTGTACAAGAGTGAACACTATGAACGAGCTCGATCTTTTAGCTCAGACATTAGTCATAAGTGGTGTTACAGCTTGCCAACCAGGAAAGAGCATGACTATCTAGTAAGAGGTACATTTCTTTCTGTCAAACAAGAGAAGACTCTCCCACATAGTTCTTTTGTTGTTTTGATTGGTGTCACACCAATAGCCACAGTGAAGTCATCTGATGAACTTAAGGTTGAGGGAATTTTTAGAGCTACTAGAAGCTATACAAACTTCTGCCTATTGAAAAAGAAGGGGAATCCTTACATTTCTAAGGTTGAACTCAGACCGATAAATTCAGATTATCTCAAAAAGGAGCCTTCAGAAATACTCAAACTTGTACATAGAGTAGATGCTGGAAATAAGGCTGCGGAAATCAG : GTACCCATATGACCAGTACGATAGAATTTGGAGACCAGCCTCAAATCTAGAATCACAAGTTACTCAAACGCCGCCATCCATTATTAAGCATGTCTTTGCAAGAAAACATAGTTTATTACCTCCTGCATTCGTATTACGAACAGCCCTCACCCATCCAGAGAGATTGGACTTCTTGCATGAAGACCTTGACACAGGATATTATACTTACTCTCTCTTCCTGTACTTTCTAGAGCCCAATGACTCAGTTCAAGCTGGAGAAAGGGTGTTCTATATATACATTAACAACGAAAAGAGACTTAAGGTTGATATACTGGCTAGTGGTTCCAGATACCTGGATGTAGTTCTGAATTTCAGAGCAAATAGGTCTGTCAACCTGACAATGATCAAGGCCTCAAATCTATCTCAATTGGGACCCATTTGTAATGGTTATGAGATTTTAAAGGCTCTTCCTCGTGTTAAAGAAACAGCCACTGAAGAAG : TTGACATAATGGCGAATGTCAAGAAGGAATTATTGCAACAAAACAAAAACAATGAAATATGGAAGAGTTGGTCAGGAGACCCTTGTCTTCCCCTTCCCTGGCCGGGCCTAACTTGTGATCGAGTTAATGGTACTTCAGTCATCACTCAGAT : AGATCTCTCCTCAGGTGGCCTTAGTGGACCTAGCCCTCCTAGCATCCAAAAACTGATGCACCTGAGAAAACT : GAATATCAGCATTAATGGCTCTAGTGGCACAAATTCACTCTTTACATCATACTTCACATACTCTACAAG : ATACTTAAGCAGCAGGATTCATATTAGCAACAAGCTTTCTAGAAGCATAAAAGAATCTAATATTACAACAGA : CAAAGGGATGGCTAATGTTAAACAAAACTCAAGTTCAACACATAAACTTGTGATTGGAGCAGCTGTAGGTACAGCCCTCCTGGTGATCCTTGCAATTGTTATCTCTGTGGTCTGCCTCTTCAAAAGACGAGTAATGGCAGGACCAAAATTTCTTATGAGAAATTACTCGATCACAAGGA : ATGCAGTATACTCAGTACCAAGCATGGATACTACCATGATGAAGTCAATATCCTCCAGGAACTTCAAATTGGAATATATAGAAGCTATTACTCAGAACTACAAAACTTTGATAGGTGAAGGTGGCTTTGGATCCGTTTACCGTGGTACCTTACCTGATGGTGTAGAAGTGGCTGTAAAGGTCAGGTCAGCCACTTCGACTCAGGGAATTCGAGAATTCAATAACGAG : CTTAACCTTCTGTCAGCTATCACACATGAGAACCTGGTCCCTCTTATTGGCTACTGCTGCGAGAATGAACAGCAGATTCTGGTTTATCCATTTATGTCAAACAGCTCCCTACAGGATAGGTTATATG : GAGGAGCAGCAAAAAGGAAGATTCTAGACTGGCCGGCCAGACTTTCCATTGCGTTAGGAGCAGCGAGAG : GTTTGCTGTACCTTCACACATTCTCGGAGCGTTGTCTGATCCATAGGGACGTCAAGTCAAGCAACATACTCTTGGATCAGAGCATGTGTGCCAAGGTTGCTGATTTTGGATTTTCAAAATATGCATCTCAAGAAGGGGATAGTGGTACTTCTTTAGAAGTAAGGGGGACAGCTGGGTACTTGGATCCAGA : GTACTACTCGACCCAACGTCTGTCAGCAAAAAGTGATGTCTTCAGCTTTGGAGTTGTCCTACTGGAAATCCTCACAGGTCGAGAGCCTCTCAATATTAACAAGCCAAGAAATGAGTGGAGCTTGGTTGAATGG : GCGAAACCTCTAATAAGAAGCTCAAGAGTTGAAGAAATTGTGGATCCCACTATCAAGGGAGGGTATCATGGTGAGGCGCTGTGGAGAGTGGTAGAGGTGGCTTTGGCATGCACAGAGACATACTCGACTTACAGACCATGCATGGCGGACATTGTAAGAGAGCTCGAGGATGCATTGATAATAGAAAATAATGCATCAGAATACTTGAAGTCCCTAGACAGCTTTGGAGGATCAAACCGTTTCTCCGTAGAAAGGTCCATTGTCCTTCCACCTATTAAATCTCAAACAGAACCATCCAGTCTCCTCTCAAAACCAGCCCCTCCACAACCAAGGTAAATGCTGTAGAGGAATGGATTTAAACTGATTGCAATAGATAACAGAATTCTTAGAAAAGTGTTTGGAATTTTTGCAAATTACTCCTCAAATTCCTTTTAAGTTAAATCTCGTTAAACTGTTCATTCAGTAGAGCAGATTTTGTTATACATACCAGAGAACAGGAAACAGTGTTGTCAAAGGTGTGCTTAAGCCCCAAAGTGAGGCATACTTTCCTTGCGATTGAGATCTTGAAGACTGATATTTCACTTTATCGTAAAAAAAATTCAATTTCTTTGTCCATAA</gDNA_template>
            <first_frame> F  S  L  V  F  T  *  *  C  F  K  N  *  N  H  W  K  S  *  V  P  V  C  W  Y  L  Q  N  L  S  C  S  L  L  P  I  F  A  F  *  S  V  F  H  F  K  I  T  E  N  H  E  L  E  I  G  F  C  R  *  P  K  F  N  E  I  G  I  V  R  F  *  V  G  M  T  *  *  G  N  F  L  P  *  E  *  A  D  G  S  R  *  L  L  E  H  K  V  G  Q  L  C  Y  H  L  P  G  D  I  Y  T  I  C  L  C  T  R  R :   I  S  K  Y  S  V  L  C  Y  C  K  L  Y  G  T  T  Y  Q  L  K  L  D  F  R  W  N  L  V  P  *  K  S  E  L  H  I  K  A  S  V  Q  E  *  T  L  *  T  S  S  I  F  *  L  R  H  *  S  *  V  V  L  Q  L  A  N  Q  E  R  A  *  L  S  S  K  R  Y  I  S  F  C  Q  T  R  E  D  S  P  T  *  F  F  C  C  F  D  W  C  H  T  N  S  H  S  E  V  I  *  *  T  *  G  *  G  N  F  *  S  Y  *  K  L  Y  K  L  L  P  I  E  K  E  G  E  S  L  H  F  *  G  *  T  Q  T  D  K  F  R  L  S  Q  K  G  A  F  R  N  T  Q  T  C  T  *  S  R  C  W  K  *  G  C  G  N  Q  :  V  P  I  *  P  V  R  *  N  L  E  T  S  L  K  S  R  I  T  S  Y  S  N  A  A  I  H  Y  *  A  C  L  C  K  K  T  *  F  I  T  S  C  I  R  I  T  N  S  P  H  P  S  R  E  I  G  L  L  A  *  R  P  *  H  R  I  L  Y  L  L  S  L  P  V  L  S  R  A  Q  *  L  S  S  S  W  R  K  G  V  L  Y  I  H  *  Q  R  K  E  T  *  G  *  Y  T  G  *  W  F  Q  I  P  G  C  S  S  E  F  Q  S  K  *  V  C  Q  P  D  N  D  Q  G  L  K  S  I  S  I  G  T  H  L  *  W  L  *  D  F  K  G  S  S  S  C  *  R  N  S  H  *  R  S :   *  H  N  G  E  C  Q  E  G  I  I  A  T  K  Q  K  Q  *  N  M  E  E  L  V  R  R  P  L  S  S  P  S  L  A  G  P  N  L  *  S  S  *  W  Y  F  S  H  H  S  D  :  R  S  L  L  R  W  P  *  W  T  *  P  S  *  H  P  K  T  D  A  P  E  K  T  :  E  Y  Q  H  *  W  L  *  W  H  K  F  T  L  Y  I  I  L  H  I  L  Y  K  :  I  L  K  Q  Q  D  S  Y  *  Q  Q  A  F  *  K  H  K  R  I  *  Y  Y  N  R  :  Q  R  D  G  *  C  *  T  K  L  K  F  N  T  *  T  C  D  W  S  S  C  R  Y  S  P  P  G  D  P  C  N  C  Y  L  C  G  L  P  L  Q  K  T  S  N  G  R  T  K  I  S  Y  E  K  L  L  D  H  K  E :   C  S  I  L  S  T  K  H  G  Y  Y  H  D  E  V  N  I  L  Q  E  L  Q  I  G  I  Y  R  S  Y  Y  S  E  L  Q  N  F  D  R  *  R  W  L  W  I  R  L  P  W  Y  L  T  *  W  C  R  S  G  C  K  G  Q  V  S  H  F  D  S  G  N  S  R  I  Q  *  R   : A  *  P  S  V  S  Y  H  T  *  E  P  G  P  S  Y  W  L  L  L  R  E  *  T  A  D  S  G  L  S  I  Y  V  K  Q  L  P  T  G  *  V  I  W :   R  S  S  K  K  E  D  S  R  L  A  G  Q  T  F  H  C  V  R  S  S  E  R :   F  A  V  P  S  H  I  L  G  A  L  S  D  P  *  G  R  Q  V  K  Q  H  T  L  G  S  E  H  V  C  Q  G  C  *  F  W  I  F  K  I  C  I  S  R  R  G  *  W  Y  F  F  R  S  K  G  D  S  W  V  L  G  S  R  :  V  L  L  D  P  T  S  V  S  K  K  *  C  L  Q  L  W  S  C  P  T  G  N  P  H  R  S  R  A  S  Q  Y  *  Q  A  K  K  *  V  E  L  G  *  M   : G  E  T  S  N  K  K  L  K  S  *  R  N  C  G  S  H  Y  Q  G  R  V  S  W  *  G  A  V  E  S  G  R  G  G  F  G  M  H  R  D  I  L  D  L  Q  T  M  H  G  G  H  C  K  R  A  R  G  C  I  D  N  R  K  *  C  I  R  I  L  E  V  P  R  Q  L  W  R  I  K  P  F  L  R  R  K  V  H  C  P  S  T  Y  *  I  S  N  R  T  I  Q  S  P  L  K  T  S  P  S  T  T  K  V  N  A  V  E  E  W  I  *  T  D  C  N  R  *  Q  N  S  *  K  S  V  W  N  F  C  K  L  L  L  K  F  L  L  S  *  I  S  L  N  C  S  F  S  R  A  D  F  V  I  H  T  R  E  Q  E  T  V  L  S  K  V  C  L  S  P  K  V  R  H  T  F  L  A  I  E  I  L  K  T  D  I  S  L  Y  R  K  K  N  S  I  S  L  S  I  </first_frame>
            <second_frame>  L  V  *  F  L  P  S  N  A  S  K  I  E  T  I  G  S  H  K  S  Q  F  A  G  I  C  K  T  Y  L  V  P  S  Y  L  F  S  L  F  N  Q  F  F  I  L  K  L  Q  K  I  M  S  W  K  L  D  F  V  D  N  Q  S  L  M  R  *  A  *  S  G  F  E  L  G  *  P  D  R  A  I  F  F  H  E  N  R  L  M  E  V  D  N  C  W  N  I  R  L  V  N  C  V  I  I  C  L  V  I  Y  I  Q  S  A  F  A  Q  E   : G  F  L  S  I  Q  C  C  A  T  A  N  F  T  E  P  R  T  N  L  S  W  I  S  D  G  I  W  F  P  E  N  Q  S  C  I  S  R  P  V  Y  K  S  E  H  Y  E  R  A  R  S  F  S  S  D  I  S  H  K  W  C  Y  S  L  P  T  R  K  E  H  D  Y  L  V  R  G  T  F  L  S  V  K  Q  E  K  T  L  P  H  S  S  F  V  V  L  I  G  V  T  P  I  A  T  V  K  S  S  D  E  L  K  V  E  G  I  F  R  A  T  R  S  Y  T  N  F  C  L  L  K  K  K  G  N  P  Y  I  S  K  V  E  L  R  P  I  N  S  D  Y  L  K  K  E  P  S  E  I  L  K  L  V  H  R  V  D  A  G  N  K  A  A  E  I  R :   Y  P  Y  D  Q  Y  D  R  I  W  R  P  A  S  N  L  E  S  Q  V  T  Q  T  P  P  S  I  I  K  H  V  F  A  R  K  H  S  L  L  P  P  A  F  V  L  R  T  A  L  T  H  P  E  R  L  D  F  L  H  E  D  L  D  T  G  Y  Y  T  Y  S  L  F  L  Y  F  L  E  P  N  D  S  V  Q  A  G  E  R  V  F  Y  I  Y  I  N  N  E  K  R  L  K  V  D  I  L  A  S  G  S  R  Y  L  D  V  V  L  N  F  R  A  N  R  S  V  N  L  T  M  I  K  A  S  N  L  S  Q  L  G  P  I  C  N  G  Y  E  I  L  K  A  L  P  R  V  K  E  T  A  T  E  E   : V  D  I  M  A  N  V  K  K  E  L  L  Q  Q  N  K  N  N  E  I  W  K  S  W  S  G  D  P  C  L  P  L  P  W  P  G  L  T  C  D  R  V  N  G  T  S  V  I  T  Q  I :   D  L  S  S  G  G  L  S  G  P  S  P  P  S  I  Q  K  L  M  H  L  R  K  L :   N  I  S  I  N  G  S  S  G  T  N  S  L  F  T  S  Y  F  T  Y  S  T  R :   Y  L  S  S  R  I  H  I  S  N  K  L  S  R  S  I  K  E  S  N  I  T  T  D :   K  G  M  A  N  V  K  Q  N  S  S  S  T  H  K  L  V  I  G  A  A  V  G  T  A  L  L  V  I  L  A  I  V  I  S  V  V  C  L  F  K  R  R  V  M  A  G  P  K  F  L  M  R  N  Y  S  I  T  R   : N  A  V  Y  S  V  P  S  M  D  T  T  M  M  K  S  I  S  S  R  N  F  K  L  E  Y  I  E  A  I  T  Q  N  Y  K  T  L  I  G  E  G  G  F  G  S  V  Y  R  G  T  L  P  D  G  V  E  V  A  V  K  V  R  S  A  T  S  T  Q  G  I  R  E  F  N  N  E  :  L  N  L  L  S  A  I  T  H  E  N  L  V  P  L  I  G  Y  C  C  E  N  E  Q  Q  I  L  V  Y  P  F  M  S  N  S  S  L  Q  D  R  L  Y   : G  G  A  A  K  R  K  I  L  D  W  P  A  R  L  S  I  A  L  G  A  A  R   : G  L  L  Y  L  H  T  F  S  E  R  C  L  I  H  R  D  V  K  S  S  N  I  L  L  D  Q  S  M  C  A  K  V  A  D  F  G  F  S  K  Y  A  S  Q  E  G  D  S  G  T  S  L  E  V  R  G  T  A  G  Y  L  D  P  E :   Y  Y  S  T  Q  R  L  S  A  K  S  D  V  F  S  F  G  V  V  L  L  E  I  L  T  G  R  E  P  L  N  I  N  K  P  R  N  E  W  S  L  V  E  W  :  A  K  P  L  I  R  S  S  R  V  E  E  I  V  D  P  T  I  K  G  G  Y  H  G  E  A  L  W  R  V  V  E  V  A  L  A  C  T  E  T  Y  S  T  Y  R  P  C  M  A  D  I  V  R  E  L  E  D  A  L  I  I  E  N  N  A  S  E  Y  L  K  S  L  D  S  F  G  G  S  N  R  F  S  V  E  R  S  I  V  L  P  P  I  K  S  Q  T  E  P  S  S  L  L  S  K  P  A  P  P  Q  P  R  *  M  L  *  R  N  G  F  K  L  I  A  I  D  N  R  I  L  R  K  V  F  G  I  F  A  N  Y  S  S  N  S  F  *  V  K  S  R  *  T  V  H  S  V  E  Q  I  L  L  Y  I  P  E  N  R  K  Q  C  C  Q  R  C  A  *  A  P  K  *  G  I  L  S  L  R  L  R  S  *  R  L  I  F  H  F  I  V  K  K  I  Q  F  L  C  P  * </second_frame>
            <third_frame>   *  F  S  F  Y  L  V  M  L  Q  K  L  K  P  L  E  V  I  S  P  S  L  L  V  S  A  K  P  I  L  F  P  P  T  Y  F  R  F  L  I  S  F  S  F  *  N  Y  R  K  S  *  V  G  N  W  I  L  *  I  T  K  V  *  *  D  R  H  S  Q  V  L  S  W  D  D  L  I  G  Q  F  S  S  M  R  I  G  *  W  K  *  I  I  A  G  T  *  G  W  S  T  V  L  S  S  A  W  *  Y  I  Y  N  L  P  L  H  K  K  :  D  F  *  V  F  S  A  V  L  L  Q  T  L  R  N  H  V  P  T  *  V  G  F  Q  M  E  F  G  S  L  K  I  R  V  A  Y  Q  G  Q  C  T  R  V  N  T  M  N  E  L  D  L  L  A  Q  T  L  V  I  S  G  V  T  A  C  Q  P  G  K  S  M  T  I  *  *  E  V  H  F  F  L  S  N  K  R  R  L  S  H  I  V  L  L  L  F  *  L  V  S  H  Q  *  P  Q  *  S  H  L  M  N  L  R  L  R  E  F  L  E  L  L  E  A  I  Q  T  S  A  Y  *  K  R  R  G  I  L  T  F  L  R  L  N  S  D  R  *  I  Q  I  I  S  K  R  S  L  Q  K  Y  S  N  L  Y  I  E  *  M  L  E  I  R  L  R  K  S   : G  T  H  M  T  S  T  I  E  F  G  D  Q  P  Q  I  *  N  H  K  L  L  K  R  R  H  P  L  L  S  M  S  L  Q  E  N  I  V  Y  Y  L  L  H  S  Y  Y  E  Q  P  S  P  I  Q  R  D  W  T  S  C  M  K  T  L  T  Q  D  I  I  L  T  L  S  S  C  T  F  *  S  P  M  T  Q  F  K  L  E  K  G  C  S  I  Y  T  L  T  T  K  R  D  L  R  L  I  Y  W  L  V  V  P  D  T  W  M  *  F  *  I  S  E  Q  I  G  L  S  T  *  Q  *  S  R  P  Q  I  Y  L  N  W  D  P  F  V  M  V  M  R  F  *  R  L  F  L  V  L  K  K  Q  P  L  K  K  :  L  T  *  W  R  M  S  R  R  N  Y  C  N  K  T  K  T  M  K  Y  G  R  V  G  Q  E  T  L  V  F  P  F  P  G  R  A  *  L  V  I  E  L  M  V  L  Q  S  S  L  R   : *  I  S  P  Q  V  A  L  V  D  L  A  L  L  A  S  K  N  *  C  T  *  E  N   : *  I  S  A  L  M  A  L  V  A  Q  I  H  S  L  H  H  T  S  H  T  L  Q   : D  T  *  A  A  G  F  I  L  A  T  S  F  L  E  A  *  K  N  L  I  L  Q  Q   : T  K  G  W  L  M  L  N  K  T  Q  V  Q  H  I  N  L  *  L  E  Q  L  *  V  Q  P  S  W  *  S  L  Q  L  L  S  L  W  S  A  S  S  K  D  E  *  W  Q  D  Q  N  F  L  *  E  I  T  R  S  Q  G  :  M  Q  Y  T  Q  Y  Q  A  W  I  L  P  *  *  S  Q  Y  P  P  G  T  S  N  W  N  I  *  K  L  L  L  R  T  T  K  L  *  *  V  K  V  A  L  D  P  F  T  V  V  P  Y  L  M  V  *  K  W  L  *  R  S  G  Q  P  L  R  L  R  E  F  E  N  S  I  T  S :   L  T  F  C  Q  L  S  H  M  R  T  W  S  L  L  L  A  T  A  A  R  M  N  S  R  F  W  F  I  H  L  C  Q  T  A  P  Y  R  I  G  Y  M  :  E  E  Q  Q  K  G  R  F  *  T  G  R  P  D  F  P  L  R  *  E  Q  R  E  :  V  C  C  T  F  T  H  S  R  S  V  V  *  S  I  G  T  S  S  Q  A  T  Y  S  W  I  R  A  C  V  P  R  L  L  I  L  D  F  Q  N  M  H  L  K  K  G  I  V  V  L  L  *  K  *  G  G  Q  L  G  T  W  I  Q   : S  T  T  R  P  N  V  C  Q  Q  K  V  M  S  S  A  L  E  L  S  Y  W  K  S  S  Q  V  E  S  L  S  I  L  T  S  Q  E  M  S  G  A  W  L  N  G :   R  N  L  *  *  E  A  Q  E  L  K  K  L  W  I  P  L  S  R  E  G  I  M  V  R  R  C  G  E  W  *  R  W  L  W  H  A  Q  R  H  T  R  L  T  D  H  A  W  R  T  L  *  E  S  S  R  M  H  *  *  *  K  I  M  H  Q  N  T  *  S  P  *  T  A  L  E  D  Q  T  V  S  P  *  K  G  P  L  S  F  H  L  L  N  L  K  Q  N  H  P  V  S  S  Q  N  Q  P  L  H  N  Q  G  K  C  C  R  G  M  D  L  N  *  L  Q  *  I  T  E  F  L  E  K  C  L  E  F  L  Q  I  T  P  Q  I  P  F  K  L  N  L  V  K  L  F  I  Q  *  S  R  F  C  Y  T  Y  Q  R  T  G  N  S  V  V  K  G  V  L  K  P  Q  S  E  A  Y  F  P  C  D  *  D  L  E  D  *  Y  F  T  L  S  *  K  K  F  N  F  F  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93671" stop="93545"/>
                    <exon start="93051" stop="92535"/>
                    <exon start="92410" stop="91932"/>
                    <exon start="91830" stop="91680"/>
                    <exon start="91519" stop="91448"/>
                    <exon start="91345" stop="91277"/>
                    <exon start="91078" stop="91007"/>
                    <exon start="90845" stop="90667"/>
                    <exon start="90373" stop="90147"/>
                    <exon start="89789" stop="89663"/>
                    <exon start="89576" stop="89508"/>
                    <exon start="89266" stop="89077"/>
                    <exon start="88819" stop="88687"/>
                    <exon start="88374" stop="88039"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2745</number_coding_nucleotides>
                  <number_encoded_amino_acids>915</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDRAIFFHENRLMEVDNCWNIRLVNCVIICLVIYIQSAFAQEGFLSIQCCATANFTEPRTNLSWISDGIWFPENQSCISRPVYKSEHYERARSFSSDISHKWCYSLPTRKEHDYLVRGTFLSVKQEKTLPHSSFVVLIGVTPIATVKSSDELKVEGIFRATRSYTNFCLLKKKGNPYISKVELRPINSDYLKKEPSEILKLVHRVDAGNKAAEIRYPYDQYDRIWRPASNLESQVTQTPPSIIKHVFARKHSLLPPAFVLRTALTHPERLDFLHEDLDTGYYTYSLFLYFLEPNDSVQAGERVFYIYINNEKRLKVDILASGSRYLDVVLNFRANRSVNLTMIKASNLSQLGPICNGYEILKALPRVKETATEEVDIMANVKKELLQQNKNNEIWKSWSGDPCLPLPWPGLTCDRVNGTSVITQIDLSSGGLSGPSPPSIQKLMHLRKLNISINGSSGTNSLFTSYFTYSTRYLSSRIHISNKLSRSIKESNITTDKGMANVKQNSSSTHKLVIGAAVGTALLVILAIVISVVCLFKRRVMAGPKFLMRNYSITRNAVYSVPSMDTTMMKSISSRNFKLEYIEAITQNYKTLIGEGGFGSVYRGTLPDGVEVAVKVRSATSTQGIREFNNELNLLSAITHENLVPLIGYCCENEQQILVYPFMSNSSLQDRLYGGAAKRKILDWPARLSIALGAARGLLYLHTFSERCLIHRDVKSSNILLDQSMCAKVADFGFSKYASQEGDSGTSLEVRGTAGYLDPEYYSTQRLSAKSDVFSFGVVLLEILTGREPLNINKPRNEWSLVEWAKPLIRSSRVEEIVDPTIKGGYHGEALWRVVEVALACTETYSTYRPCMADIVRELEDALIIENNASEYLKSLDSFGGSNRFSVERSIVLPPIKSQTEPSSLLSKPAPPQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="111058" PGL_stop="120576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112820" e_stop="112886"/>
            <exon e_start="112975" e_stop="113058"/>
            <exon e_start="113577" e_stop="113610"/>
            <exon e_start="120098" e_stop="120576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112820" e_stop="112886" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112887" i_stop="112974" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112975" e_stop="113058" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="113059" i_stop="113576" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113577" e_stop="113610" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.952">
            <gDNA_intron_boundary i_start="113611" i_stop="120097" i_length="6487"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="120098" e_stop="120576" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112820" stop="112886"/>
              <exon start="112975" stop="113058"/>
              <exon start="113577" stop="113610"/>
              <exon start="120098" stop="120576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112820" stop="112886"/>
              <exon start="112975" stop="113058"/>
              <exon start="113577" stop="113610"/>
              <exon start="120098" stop="120547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAG : GGCAGATTTTGTAGACAAGATGTTGGTGCAACAGGGAATTAATGTATAAGCCTATCTCACACAGGAGTTGATTTTTGTTTGCTA : GTATAACGGCCCAAATTGATGGATAAAAGATGTG : GAAAAAGAGGTTCAGGCTTAGAGTTGCAAAGCTTCACTTTCTTCCCTGCAGCCAAAGAAACTTACTGGAGAGTGCATTCAGTAGAGAGATTCAATCTTCACAGAATATTCTGTGCAGAAGTGCTTCTGAAAAGCATGATCCGGAGTCCAGATTCCTCTGTCAGAGCAAAAGTTCAAGTCGATCAATTGGCTCTCCTGCTCATTGCACAGCTGGCGTGAACTGGAAATCCAAAAGCTCTGCGCAACCCCTTTCATCTAATATTTTACCTAGAGAGGATGATTTCCTGGATAACAAATTCAGTGCTTCAGTTAGATCCAACTATAAATCTGACTGTGAGGCAGGTTCAGGATGGGAGGATATGATTTTCAAACAATTGTAGCTGGCAGTTCTAGAGAGGATGCTTATTTAGGGTATCACTTGAACTTGATGACAGTTCAAATGTGATGCATGAGAGAAGGAAAACATTTATTTGGAGCTGT</gDNA_template>
            <first_frame> H  F  F  V  G  N  C  Y  *  K  S  R  E  A  R  W  I  S  *  F  F  E   : G  Q  I  L  *  T  R  C  W  C  N  R  E  L  M  Y  K  P  I  S  H  R  S  *  F  L  F  A   : S  I  T  A  Q  I  D  G  *  K  M  W :   K  K  R  F  R  L  R  V  A  K  L  H  F  L  P  C  S  Q  R  N  L  L  E  S  A  F  S  R  E  I  Q  S  S  Q  N  I  L  C  R  S  A  S  E  K  H  D  P  E  S  R  F  L  C  Q  S  K  S  S  S  R  S  I  G  S  P  A  H  C  T  A  G  V  N  W  K  S  K  S  S  A  Q  P  L  S  S  N  I  L  P  R  E  D  D  F  L  D  N  K  F  S  A  S  V  R  S  N  Y  K  S  D  C  E  A  G  S  G  W  E  D  M  I  F  K  Q  L  *  L  A  V  L  E  R  M  L  I  *  G  I  T  *  T  *  *  Q  F  K  C  D  A  *  E  K  E  N  I  Y  L  E  L  </first_frame>
            <second_frame>  I  S  L  L  E  I  V  T  K  S  H  G  R  P  D  G  Y  R  N  F  L  K  :  G  R  F  C  R  Q  D  V  G  A  T  G  N  *  C  I  S  L  S  H  T  G  V  D  F  C  L  L  :  V  *  R  P  K  L  M  D  K  R  C   : G  K  R  G  S  G  L  E  L  Q  S  F  T  F  F  P  A  A  K  E  T  Y  W  R  V  H  S  V  E  R  F  N  L  H  R  I  F  C  A  E  V  L  L  K  S  M  I  R  S  P  D  S  S  V  R  A  K  V  Q  V  D  Q  L  A  L  L  L  I  A  Q  L  A  *  T  G  N  P  K  A  L  R  N  P  F  H  L  I  F  Y  L  E  R  M  I  S  W  I  T  N  S  V  L  Q  L  D  P  T  I  N  L  T  V  R  Q  V  Q  D  G  R  I  *  F  S  N  N  C  S  W  Q  F  *  R  G  C  L  F  R  V  S  L  E  L  D  D  S  S  N  V  M  H  E  R  R  K  T  F  I  W  S  C </second_frame>
            <third_frame>   F  L  C  W  K  L  L  L  K  V  T  G  G  Q  M  D  I  V  I  F  *  R :   A  D  F  V  D  K  M  L  V  Q  Q  G  I  N  V  *  A  Y  L  T  Q  E  L  I  F  V  C  * :   Y  N  G  P  N  *  W  I  K  D  V  :  E  K  E  V  Q  A  *  S  C  K  A  S  L  S  S  L  Q  P  K  K  L  T  G  E  C  I  Q  *  R  D  S  I  F  T  E  Y  S  V  Q  K  C  F  *  K  A  *  S  G  V  Q  I  P  L  S  E  Q  K  F  K  S  I  N  W  L  S  C  S  L  H  S  W  R  E  L  E  I  Q  K  L  C  A  T  P  F  I  *  Y  F  T  *  R  G  *  F  P  G  *  Q  I  Q  C  F  S  *  I  Q  L  *  I  *  L  *  G  R  F  R  M  G  G  Y  D  F  Q  T  I  V  A  G  S  S  R  E  D  A  Y  L  G  Y  H  L  N  L  M  T  V  Q  M  *  C  M  R  E  G  K  H  L  F  G  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113603" stop="113610"/>
                    <exon start="120098" stop="120476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMWKKRFRLRVAKLHFLPCSQRNLLESAFSREIQSSQNILCRSASEKHDPESRFLCQSKSSSRSIGSPAHCTAGVNWKSKSSAQPLSSNILPREDDFLDNKFSASVRSNYKSDCEAGSGWEDMIFKQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111058" e_stop="111096"/>
            <exon e_start="111188" e_stop="111262"/>
            <exon e_start="111501" e_stop="111663"/>
            <exon e_start="111913" e_stop="111924"/>
            <exon e_start="112756" e_stop="112886"/>
            <exon e_start="112980" e_stop="112986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.621" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.947"/>
          <exon-intron don_prob="0.000" acc_prob="0.588" e_score="0.963"/>
          <exon-intron don_prob="0.483" acc_prob="0.859" e_score="0.500"/>
          <exon-intron don_prob="0.906" acc_prob="0.163" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="111058" e_stop="111096" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.621">
            <gDNA_intron_boundary i_start="111097" i_stop="111187" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="111188" e_stop="111262" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111263" i_stop="111500" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="111501" e_stop="111663" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.588">
            <gDNA_intron_boundary i_start="111664" i_stop="111912" i_length="249"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="111913" e_stop="111924" e_length="12"/>
          </exon>
          <intron i_serial="4" don_prob="0.483" acc_prob="0.859">
            <gDNA_intron_boundary i_start="111925" i_stop="112755" i_length="831"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="112756" e_stop="112886" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.906" acc_prob="0.163">
            <gDNA_intron_boundary i_start="112887" i_stop="112979" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112980" e_stop="112986" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111058" stop="111096"/>
              <exon start="111188" stop="111262"/>
              <exon start="111501" stop="111663"/>
              <exon start="111913" stop="111924"/>
              <exon start="112756" stop="112886"/>
              <exon start="112980" stop="112986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGTCTTTGATTCACCAGCTAACTTGAGGACAATTCAG : TGGGGATTTCTCCAAGTTCCCTTAACAAATTGAATGCAAGCATAGGGGCATTCAAGCTTTCAGGATACATCTCAG : GTATCAATTCAAGATTTGTTACCAAAAAGGACCAGTACAAGAATCACTTAATAACATAGCTATGAGTTTGGAAAGTGCTTCTGACATTGAGCAGCGAAGTAGATATATTAACTGTTTTTGTTGAATCTAAACTACCCAAGATAAATTTTTTTTGATCCGACTT : GGTAGAGGGTTG : ATGATATGCATGCTTTCCCTGCAAGCTTTGGCCTTAAAGGAGAGGCTCTGGGCTCCACTTCTGACATTTCTTTGTTGGAAATTGTTACTAAAAGTCACGGGAGGCCAGATGGATATCGTAATTTTTTGAAG : ATTTTGT</gDNA_template>
            <first_frame> S  V  F  D  S  P  A  N  L  R  T  I  Q  :  W  G  F  L  Q  V  P  L  T  N  *  M  Q  A  *  G  H  S  S  F  Q  D  T  S  Q  :  V  S  I  Q  D  L  L  P  K  R  T  S  T  R  I  T  *  *  H  S  Y  E  F  G  K  C  F  *  H  *  A  A  K  *  I  Y  *  L  F  L  L  N  L  N  Y  P  R  *  I  F  F  D  P  T   : W  *  R  V   : D  D  M  H  A  F  P  A  S  F  G  L  K  G  E  A  L  G  S  T  S  D  I  S  L  L  E  I  V  T  K  S  H  G  R  P  D  G  Y  R  N  F  L  K  :  I  L  </first_frame>
            <second_frame>  P  S  L  I  H  Q  L  T  *  G  Q  F  S :   G  D  F  S  K  F  P  *  Q  I  E  C  K  H  R  G  I  Q  A  F  R  I  H  L  R :   Y  Q  F  K  I  C  Y  Q  K  G  P  V  Q  E  S  L  N  N  I  A  M  S  L  E  S  A  S  D  I  E  Q  R  S  R  Y  I  N  C  F  C  *  I  *  T  T  Q  D  K  F  F  L  I  R  L  :  G  R  G  L  :  M  I  C  M  L  S  L  Q  A  L  A  L  K  E  R  L  W  A  P  L  L  T  F  L  C  W  K  L  L  L  K  V  T  G  G  Q  M  D  I  V  I  F  *  R :   F  C </second_frame>
            <third_frame>   R  L  *  F  T  S  *  L  E  D  N  S   : V  G  I  S  P  S  S  L  N  K  L  N  A  S  I  G  A  F  K  L  S  G  Y  I  S   : G  I  N  S  R  F  V  T  K  K  D  Q  Y  K  N  H  L  I  T  *  L  *  V  W  K  V  L  L  T  L  S  S  E  V  D  I  L  T  V  F  V  E  S  K  L  P  K  I  N  F  F  *  S  D  L :   V  E  G  * :   *  Y  A  C  F  P  C  K  L  W  P  *  R  R  G  S  G  L  H  F  *  H  F  F  V  G  N  C  Y  *  K  S  R  E  A  R  W  I  S  *  F  F  E   : D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0073P13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="128774" PGL_stop="130919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128774" e_stop="128969"/>
            <exon e_start="130309" e_stop="130496"/>
            <exon e_start="130573" e_stop="130919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.601" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128774" e_stop="128969" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.601" acc_prob="0.972">
            <gDNA_intron_boundary i_start="128970" i_stop="130308" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130309" e_stop="130496" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.950">
            <gDNA_intron_boundary i_start="130497" i_stop="130572" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="130573" e_stop="130919" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128774" stop="128969"/>
              <exon start="130309" stop="130496"/>
              <exon start="130573" stop="130919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACACACTGGAGATTGTGGGAACATTAGATACTGCCCAGGCCAAATTCGATGACATCTTGAACTCTATGTCAGTGGATGCAGCATGTGACAAGATTAAAAGCCTTGCCAAGAGTAAAGAACTTGACTCTTCTTTGGTGCTGCTGATAAATGGTGCTTGGGCTTCAGCAAAAGAATCCTCTACAATGAGAAATGAG : GTAAAGGAGATAATGCATCGTCTATACAAAGCTACACAGAGTAGTCTAAGGAGCATGGCACCAAAAGAAATAAAGTTGCTCAAGTACCTGCTGAACATCACAGATCCTGAAGAGCGATTCTCAGCATTGGCAACAGCTTTCAGCCCTGGTCATGAACATGATGCCAAGGATCCTAATGCTATATACAC : AAGTCCAAAAGAGTTGCACAAGTGGATCAAAATCATGCTTGATGCATACAACATGAATAAAGAAGAGACTGAAATTAGAGAAGCGAAGCAGTTGGATCAACCTATGGTCATTCAGAGACTTTCCATTCTGAAGGAGACAGTTGAAGCAGAATATTTGGAAAAAGAAGCTAATACAGAAAAAGATTCACAACCAGAAGAAACTGTGATATGACAACCCAGTCCACCGGCGTATCTGTTGTTATGCTCACTGTCTGTTCTCTTCTCAAAATTAGCTTTTTTTGGTGATCTGTGTATCTCTCAGCATGCAGTAGGATGGATGGCTGGTTGCAATAGTGAAGCAATTATGT</gDNA_template>
            <first_frame> Q  H  T  G  D  C  G  N  I  R  Y  C  P  G  Q  I  R  *  H  L  E  L  Y  V  S  G  C  S  M  *  Q  D  *  K  P  C  Q  E  *  R  T  *  L  F  F  G  A  A  D  K  W  C  L  G  F  S  K  R  I  L  Y  N  E  K  *   : G  K  G  D  N  A  S  S  I  Q  S  Y  T  E  *  S  K  E  H  G  T  K  R  N  K  V  A  Q  V  P  A  E  H  H  R  S  *  R  A  I  L  S  I  G  N  S  F  Q  P  W  S  *  T  *  C  Q  G  S  *  C  Y  I  H  :  K  S  K  R  V  A  Q  V  D  Q  N  H  A  *  C  I  Q  H  E  *  R  R  D  *  N  *  R  S  E  A  V  G  S  T  Y  G  H  S  E  T  F  H  S  E  G  D  S  *  S  R  I  F  G  K  R  S  *  Y  R  K  R  F  T  T  R  R  N  C  D  M  T  T  Q  S  T  G  V  S  V  V  M  L  T  V  C  S  L  L  K  I  S  F  F  W  *  S  V  Y  L  S  A  C  S  R  M  D  G  W  L  Q  *  *  S  N  Y   </first_frame>
            <second_frame>  N  T  L  E  I  V  G  T  L  D  T  A  Q  A  K  F  D  D  I  L  N  S  M  S  V  D  A  A  C  D  K  I  K  S  L  A  K  S  K  E  L  D  S  S  L  V  L  L  I  N  G  A  W  A  S  A  K  E  S  S  T  M  R  N  E  :  V  K  E  I  M  H  R  L  Y  K  A  T  Q  S  S  L  R  S  M  A  P  K  E  I  K  L  L  K  Y  L  L  N  I  T  D  P  E  E  R  F  S  A  L  A  T  A  F  S  P  G  H  E  H  D  A  K  D  P  N  A  I  Y  T :   S  P  K  E  L  H  K  W  I  K  I  M  L  D  A  Y  N  M  N  K  E  E  T  E  I  R  E  A  K  Q  L  D  Q  P  M  V  I  Q  R  L  S  I  L  K  E  T  V  E  A  E  Y  L  E  K  E  A  N  T  E  K  D  S  Q  P  E  E  T  V  I  *  Q  P  S  P  P  A  Y  L  L  L  C  S  L  S  V  L  F  S  K  L  A  F  F  G  D  L  C  I  S  Q  H  A  V  G  W  M  A  G  C  N  S  E  A  I  M  </second_frame>
            <third_frame>   T  H  W  R  L  W  E  H  *  I  L  P  R  P  N  S  M  T  S  *  T  L  C  Q  W  M  Q  H  V  T  R  L  K  A  L  P  R  V  K  N  L  T  L  L  W  C  C  *  *  M  V  L  G  L  Q  Q  K  N  P  L  Q  *  E  M  R :   *  R  R  *  C  I  V  Y  T  K  L  H  R  V  V  *  G  A  W  H  Q  K  K  *  S  C  S  S  T  C  *  T  S  Q  I  L  K  S  D  S  Q  H  W  Q  Q  L  S  A  L  V  M  N  M  M  P  R  I  L  M  L  Y  T   : Q  V  Q  K  S  C  T  S  G  S  K  S  C  L  M  H  T  T  *  I  K  K  R  L  K  L  E  K  R  S  S  W  I  N  L  W  S  F  R  D  F  P  F  *  R  R  Q  L  K  Q  N  I  W  K  K  K  L  I  Q  K  K  I  H  N  Q  K  K  L  *  Y  D  N  P  V  H  R  R  I  C  C  Y  A  H  C  L  F  S  S  Q  N  *  L  F  L  V  I  C  V  S  L  S  M  Q  *  D  G  W  L  V  A  I  V  K  Q  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0073P13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128775" stop="128969"/>
                    <exon start="130309" stop="130496"/>
                    <exon start="130573" stop="130783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTLEIVGTLDTAQAKFDDILNSMSVDAACDKIKSLAKSKELDSSLVLLINGAWASAKESSTMRNEVKEIMHRLYKATQSSLRSMAPKEIKLLKYLLNITDPEERFSALATAFSPGHEHDAKDPNAIYTSPKELHKWIKIMLDAYNMNKEETEIREAKQLDQPMVIQRLSILKETVEAEYLEKEANTEKDSQPEETVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 274 chains have been computed
$ 
$ memory statistics:
$ 421992 bytes spliced alignments in total
$ 201 spliced alignments have been stored
$ 2099 bytes was the average size of a spliced alignment
$ 29936 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1871 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 310 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:46:44
-->
