<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:46:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705458" ref_strand="+" ref_description="SGN-E705458 [FA27AH02]">
      <seq>caacagtctaagcaaagtgattcttggactgattgggtctcttccaaattgtcgcagcaccaagacgatgcgaaagatgaagcccaaagattagcggatagagcaaagggaactgcatcaaatgcaagagattctgttaattctgctgcacatgaaacccaaaggtatggttctcaaaaggctaaggagatggctgatgtagcatctgacaaatttggtgatgctaaaaattatgcgtccaagaaagccaatcaagctatggatgcagcagcagataccgctagtcatgccaaagaaagaggaaaagaaaatgcgtatgatgcttatgcctatgcatcggagaaaaccggccaagccacaaaaacagctgccgagtttgccaaggaaaaggctcatggtgcttatgcctatgcatctgataaggcaggtcaagccaagaacattgcttcagatacggccgccaatgctaaagaaagtgccaaaaataaggctcatgatgctactgattttgccaaagagaaggcacatgatgcttatgcttatgcttctgacaaggcaagtcaagccactaacattgcttctgacatggccgctgatgccaaagaaagcgtcaaacataaagcttacaatgccaaagatgtcgcctctgagaaggcgcatgattccatgaatgctgcttccggaatgggtagttcagctaggaataaagcatcggatgcttatggttttgcttctgataaagcaagtgatgcgaaagaaattgggaaagacaaagcgtatgatgcttatggatttgtatctgaaaagatgaaccgagcaaggggacgaggcttccaataaagcatccgatgcgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="5346" stop="8726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5646" g_stop="5701" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5702" i_stop="7346" i_length="1645">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7347" g_stop="7444" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="154" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7445" i_stop="7724" i_length="280">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7725" g_stop="8426" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="857" r_length="703" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E705458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5646" e_stop="5701"/>
          <exon e_start="7347" e_stop="7444"/>
          <exon e_start="7725" e_stop="8426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCAGTAAGCTAATTTATTACTCCCTCTATTTATAACATAACATTCATTCAACCCAATTGATTTTTTTATAAATAAGTATGTCTTTGTGTTTGGATACAACTGTTAAAAGGAACAAAACTTTCTCTTTGTCATGTTATACCCGTCTACAATAATAATAATAATAATAATCAAGATGAATTAACGAAAATTTTCTTGTTTACACTTGTAAAACTAGTTACGAGTACTATGTCAACTTTTATAAAAAGTTTCTTTAAAGGCTAAATTAGTAATTTTCACAAGGAGAAAGGGAACAAGTAATATGGCAGAGGGAGTACTAAAAGGGCGTTGATAAAGATTTTTTTAAAATTAAAATATGCGAAATATCCTCGAAGCGTTTGCAGAAAAAATATGAACTGAAAGTTATATTTATGTTTACTTTAAAAAAAAAGGAACACAAAACTGCGGAAAAATTAGATTTATACTTAATTAAAGTTGTCTTAGAGAGTACGAATAATATTAGGGTAAAAGCCAGAAAAATATGGTTAAACCAAAAATGCCTTTAAGGTTGTTGGTTCAAAACTGTTTCTGGCTTATAAATATTTGCTTTATAAGCATTTTTCATTTTTATCAAATGCATAAAAGTAACCCAAAAAAAAAACAAGTATGAATTTGTTTGACCAACGTATAAACTTTTAGCTATTGCCACAAAAATTAAGTGTAATAATATCTTTTTACAAATAATTTAGATTAAATATAATGTTTTTATCACTACAACAAAAATAACTTTAAGCGATAAATATTTATATTAATAAAGAGGGCTAATTGTCACGAATATTGTTGAAGTTTTACGAGCATATCAAAGAATGTTGAATTTTAATTGCAACTAAAAATATATAATTAGCGGCAATTAACTTAATTGCCGCTAACTGATATTTTTTATGTTAATGTAGTGTATGTAAGTTTCCCTTTATCCTTCTTTGCTATCTTCGATGAGTCTCTGCCTTATTTGAGCAAGTGATACTCTACAAATCTTTTTGGGCTCGTAGACATAACATTTGGATGCCTTTTTACAAAACTAGTCCCTAGCTAAATGTAGGTTCAAAATTTGTATCTTTCTCTAGGATACACTCTTAAGACAGTGGATATAGAATCTATTTTGAGCACTGTTCAACATGACCCTTGATTTGCATAGATAGAGTCTCCATTGTCAACCTTTTGTGATTGTAACATTAAAATAGGTAGTAGCTCATGGCTTTTTCGTTGTATGACGATCAATTAATTCTTTGAGAAATCTATTCTTAAGTGATCGAAAAAATTTCAAAATGGAGGTAATTGATAAACAAGTTTTTACAAATTTCATTTCCCCTTTTATAAATGGACAAGTGTAAGTGTCATACAATTTATTCGGAAAACCTTTGAAAGAAACTCAAACATATCCGAAGCATTTTCAGGTGAAGGTTTGAAACATTTTATTTGAATTGTTTAGGCAAATGTTGGTTACTTCTTGTTACGTACGCTTTTACAACAAGTGAATACTGTAGTAGTTTGTTTCATTATCGGACATCGCCTTCTGTTCAAATGTCGATCAATCAGTTCTAAATTGGGCGCAGGTCTCTGTAAGTACGCTAATCTAAATAACTATTTGTGGGATTACCACTCTTATTTTTAGGCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATGGTACCTATTCGTCTTGTCTTCAAGCTTTGTTTGGGTGGACTTATTTTAAGTATTTTTTTTTGTGCGAAAAGTCATTTTTAACACTTTTCTAGTGTTTGGGTAAAGCAAGCAAGTGTTTGCACTTGTTTTCAAGTCAGAACAATACAAATAAGTCGAAGTCAAGAACTTAGATTCTTTAACTTATGAACTATAAGCCCATCCAGACACGCTCTTCTCTACAAGAAACCGAGAGACAACTTGTATTGCAAAGAGTTACTAATAATCAGATGTTCTTTTGCAGAAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAA-GGGACGAGGCTTCCAATAAAGCATCGGATGCGTATG</genome_strand>
        <mrna_strand>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG........................................................................................................................................................................................................................................................................................AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGGACGAGGCTTCCAATAAAGCATCCGATGCGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376831" ref_strand="+" ref_description="SGN-E376831 [TUS-19-L1](-)">
      <seq>aataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaattcagccttgtaatttttcggcatcgaagaagagatttcgaacgaaattcagtcaacaacagaaagatagaatgctagagttcgctgagaaactgggatggagaattcagaaacaagatgaacaagaagtgcatcaattttgtaatgaagtgggcgtgaagagacaagtgttcaaagtgtggatgcacaacagcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcactagtagcaccaattaattctatcacaaaagtctctttaaattccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="10864" stop="9718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10564" g_stop="10019" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="556"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E376831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10564" e_stop="10019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</genome_strand>
        <mrna_strand>AATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392516" ref_strand="+" ref_description="SGN-E392516 [TUS-36-D5](-)">
      <seq>agcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcaggtagtcgcaccaattaattctatcacaaaagtctctttaaattccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="10547" stop="9718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10247" g_stop="10019" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="231" polyA_stop="241"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E392516" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10247" e_stop="10019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCA-CTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</genome_strand>
        <mrna_strand>AGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCAGGTAGTCGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711518" ref_strand="+" ref_description="SGN-E711518 [FB02AH07]">
      <seq>gggagttgcagccgattaatgaagtgaagatctgaatatgtttcacggaggaccccgggtaattcagccttgtaatttttcggcatcgaagaagagatttcgaacgaaattcagtcaacaacagaaagatagaatgctagagttcgctgagaaactgggatggagaattcagaaacaagatgaacaagaagtgcatcaattttgtaatgaagtgggcgtgaagagacaagtgttcaaagtgtggatgcacaacagcaaacaagcaaccaagaagaaacaaaattaaacaggcaagactacaaaatcccaatttagataaattaattagagacactctttttttttgtgcataaatctgatagtttattattagacaaatagtagtaattactattctttgatcacaaaatttaaaccttatgtggtaagtactcactagtagcaccaattaattctatcacaaaagtctctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="10800" stop="9725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10500" g_stop="10026" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="486"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E711518" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10500" e_stop="10026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAA</genome_strand>
        <mrna_strand>GGGAGTTGCAGCCGATTAATGAAGTGAAGATCTGAATATGTTTCACGGAGGACCCCGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392643" ref_strand="+" ref_description="SGN-E392643 [TUS-36-D5]">
      <seq>cagaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaattcacccttgtaatttttcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11388" stop="10117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11088" g_stop="10417" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E392643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11088" e_stop="10417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGC</genome_strand>
        <mrna_strand>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCACCCTTGTAATTTTTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376832" ref_strand="+" ref_description="SGN-E376832 [TUS-19-L1]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11387" stop="10138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11087" g_stop="10438" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E376832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11087" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAAT</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242551" ref_strand="+" ref_description="SGN-E242551 [cLED-30-F21]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11387" stop="10143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11087" g_stop="10443" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E242551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11087" e_stop="10443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGG</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237835" ref_strand="+" ref_description="SGN-E237835 [cLED-18-H11]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatatgtttcacggaggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11387" stop="10146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11087" g_stop="10446" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E237835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11087" e_stop="10446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAA</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237873" ref_strand="+" ref_description="SGN-E237873 [cLED-18-H2]">
      <seq>aaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagtgaagatctgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11375" stop="10162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11075" g_stop="10462" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E237873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11075" e_stop="10462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATAT</genome_strand>
        <mrna_strand>AAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237981" ref_strand="+" ref_description="SGN-E237981 [cLED-18-H9]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccgccttctcttccagctgtgcctacgcagcaacaacaccatcataaataccctcacagctatccaagaggtcacatggcaccagtaatgatgagtttcggcgggaacacgggagttgcagctgaatcatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11387" stop="10176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11087" g_stop="10476" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E237981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11087" e_stop="10476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGT</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231057" ref_strand="+" ref_description="SGN-E231057 [cLED-5-N11]">
      <seq>agaggccaagaaaaggatatgggcttgcctaatcccaatcccatgagttataacccatctcaacttaaccagcaagaatcatcttcctctgcagcaaacaagttccttaccgcaccaaatagaacaacaaatgaacatgagaataccatttttagccctaaccaaaccctagatcagcataatattactcaaaattcagatccagatccagttcgacaactatctactagttcagcaagtgagaggaatattacccccgtccggtacaaagaatgtctcaaaaatcatgctgcaaatttgggaggatatgtactagacggttgcggagaattcatgccaagcggagaagaggagacactagaatacctgaaatgtgcagcttgtgattgtcaccgcaattttcataggaaagagactgaggacgaatcacaaacacctggtgtgcatagaaataaccaccgtatacccaaccaaactccggcttctcttccagctgtgcctacgcaggaacaacaccatcataaatacccttacagctatccaagaggtcacatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="11387" stop="10230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11087" g_stop="10530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E231057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11087" e_stop="10530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCA</genome_strand>
        <mrna_strand>AGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGGCTTCTCTTCCAGCTGTGCCTACGCAGGAACAACACCATCATAAATACCCTTACAGCTATCCAAGAGGTCACATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360869" ref_strand="+" ref_description="SGN-E360869 [cLPP-7-N24]">
      <seq>ttttttcacctttatcctaaacggaaacagaagacacggaacaacaatgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21616" stop="23621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21916" g_stop="22150" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22151" i_stop="22232" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22233" g_stop="22295" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22296" i_stop="22795" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22796" g_stop="22885" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22886" i_stop="23142" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23143" g_stop="23202" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="448" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23203" i_stop="23300" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23301" g_stop="23321" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="469" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E360869" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21916" e_stop="22150"/>
          <exon e_start="22233" e_stop="22295"/>
          <exon e_start="22796" e_stop="22885"/>
          <exon e_start="23143" e_stop="23202"/>
          <exon e_start="23301" e_stop="23321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATG</genome_strand>
        <mrna_strand>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACAATGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547709" ref_strand="+" ref_description="SGN-E547709 [TUS-71-L17]">
      <seq>atgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatgggaaggctgttggaaggttttggtgtcggcattatttcctatgtggtgcctgtatatatagcagagatttcacctaaaaacatgaggggagttcttggatccattaaccagctctctgtaacagtggggattatgctggtatatctgttgggattatttgtaagctggagagtgcttgctgttataggaatgttaccatgcatggttttgatacctggtctattttttatacctgaatctcctcgttggttggctaaaaatgggctgaatgaagattttgaacttctttgcaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21662" stop="24570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21962" g_stop="22150" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22151" i_stop="22232" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22233" g_stop="22295" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22296" i_stop="22795" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22796" g_stop="22885" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="342" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22886" i_stop="23142" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23143" g_stop="23202" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23203" i_stop="23300" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23301" g_stop="23366" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="468" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23367" i_stop="23457" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23523" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="534" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23524" i_stop="23646" i_length="123">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23647" g_stop="23722" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="610" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23723" i_stop="24079" i_length="357">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24080" g_stop="24144" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="675" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24145" i_stop="24223" i_length="79">
            <donor d_prob="0.351" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24224" g_stop="24270" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="721" r_length="46" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E547709" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21962" e_stop="22150"/>
          <exon e_start="22233" e_stop="22295"/>
          <exon e_start="22796" e_stop="22885"/>
          <exon e_start="23143" e_stop="23202"/>
          <exon e_start="23301" e_stop="23366"/>
          <exon e_start="23458" e_stop="23523"/>
          <exon e_start="23647" e_stop="23722"/>
          <exon e_start="24080" e_stop="24144"/>
          <exon e_start="24224" e_stop="24270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTGGTAATCTTAAGTGTTCAACTTCTCTACTTGTTCTTCTTGAAGTTATGGTTAATAGTCCTGCTTGGTGAATCTTCTTGCTTGTTATCTGTAGGTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAGGTTGGTTTTGTATTGGGATTTAGAGATATCCCTGGTCACTCAATTCTCTAGGTTTTATGATATACAAATAAAAATGGCTCATTTTCAATTGAAAAAAGAAATAATTTGATCTCTTGGCATTAGCTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAGGTGAGCAATACAGTTTTTCTTTTTAAATTAGCTTAATTGCAATAGTTTCCCTAACCATGTGGTGATTGACAAACTGATTGTTATCTTATTAACTTCTCTATTTTAAGATGGTAGAATTAGTAGGATTTTTTTTTAATCAAGTAAGCATTTGACGACGTTCATCTTGTTGAAACAAGTTTTTCATCTTTCTAAAATTCCCTTTCCTTCTTGAAATATTTGAAGTTATTCTTCATCTGCAAGTTCATTGAAGCAACTCAAAAACATTGAATGAGCTGATGTCTTTCTGTTATAATGTGAAGTCATTTGTATACCTGATTTTGAACATATTTATTAATAATCCTTTATGTCACTCTGCAGGAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTGGTATGAGTTCCAAACTTATGTTTGTCACAACTAGGTTTTCATTTTTACATTATACTGATGTCAATGCTGCATTATTTAGGCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCT</genome_strand>
        <mrna_strand>ATGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG...........................................................................................GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG...........................................................................................................................CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG.....................................................................................................................................................................................................................................................................................................................................................................GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG...............................................................................GCTAAAAATGGGCTGAATGAAGATTTTG-AACTTCTTTGCAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365090" ref_strand="+" ref_description="SGN-E365090 [cLPP-17-K15]">
      <seq>tgagtttccgagatgataacaccgaggacgggcttcggaagcccttgctgcataccggtagctggtaccggatgagctcccgccagtccagtatgatgggatcctcagcccaaatcctccgcgaatctatctccatttatctttgtgttctcattgttgcattaggcccaattcaatttggcttcacttgtggctactctaaccctacccaatccgaaatcaccagcgaccttagacttaccatttcagagttctcgatctttggatctttagcaaatgttggtgcaatgattggcgcaattgcaagcggtcaaatatcagaatacattggacgaaaagggactctaatgattgcatcaattcctaatattattggatggcttgccgtttcatttgccactgatgtctcatttttatatatgggaaggctgttggaaggttttggtgtcggcattatttcctatgtggtgcctgtatatatagcagagatttcacctaaaaacatgaggggagttcttggatccattaaccagctctctgtaacagtggggattatgctggtatatctgttgggattatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21663" stop="23996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21963" g_stop="22150" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22151" i_stop="22232" i_length="82">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22233" g_stop="22295" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="251" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22296" i_stop="22795" i_length="500">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22796" g_stop="22885" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="341" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22886" i_stop="23142" i_length="257">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.159" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23143" g_stop="23202" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="401" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23203" i_stop="23300" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23301" g_stop="23366" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="467" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23367" i_stop="23457" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23458" g_stop="23523" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="533" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23524" i_stop="23646" i_length="123">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23647" g_stop="23696" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="583" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E365090" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21963" e_stop="22150"/>
          <exon e_start="22233" e_stop="22295"/>
          <exon e_start="22796" e_stop="22885"/>
          <exon e_start="23143" e_stop="23202"/>
          <exon e_start="23301" e_stop="23366"/>
          <exon e_start="23458" e_stop="23523"/>
          <exon e_start="23647" e_stop="23696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACTGTATGACGATTAATTTCCTTGCATTTCCATATACAAATTTTATATAATTAATTGTATTATGGTTGCTTTTGTAATTTTGTAGTGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAGGTATTTATATTGTCTTAGTACATTTATTTCCGTTTTTTTCAACAACATCAGGGAAACTGGGGTAGTTTTTTGGTGGTGTATGTGGTACAGTAAAATGAAAATTTGTTTCTCTCCCTATATATATACACAAGTATATATCAAAAAATTGATACTAATACTATTACGTCGCAAATTAGAGTGTTTGATTAGACTTTTCTTTTGAGTAAGTATCTACAGATTGATAATAATGCTAATTGAAGCAAGTGATTTGTTATATGAAGTTACAATTGAAAATAATTATAAGGAATAGAAAATGAGGTTTTCATGGAAAACACTTACCTTCCTACCAGACACACCGTGTATCTAGTGTAGTGAAGCTACAAGTTCTAAACGGAAACAATAGAATTAGTGACTGAAAGAAACCGTGGGACTTTTCTTGAAAAAGTTCATAGGTGGCCGATTTTATTTAGTATCTTCTTGCTGATGTATGGTTAAACATAGTGTTATTTTTTCATGGACAGTTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGGGTATAATTCTAAGGCACTTTCAACTGTTTAGTCTTGTATTCTTAATGCCACAACCTTTCCTTCGCATTTCTGCTTAAAAAAAGAAATAAAAAGTTTTCACACATCAAATCTGTGAGCTACATGTCACCAAAGGAGCAACTCTACCGTTGGTCTAAAACTTTTCTCAACAATAGTTCAACACTATGATAATCTTTTATTTTTCTTTCTTTGGTTCTTTAGTAACTTTCCCAGTTACCTCATCTCTCTCTGAAATACAGACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACTGTAAGTGATTAGTTGTTATCTCTTGCTCATTCTGATTGAATCTGCAATTTTATAGGTAATTTACTTGACCGTACATGCCCTTTTCCCACTTTTAACAGGATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTGGTAATCTTAAGTGTTCAACTTCTCTACTTGTTCTTCTTGAAGTTATGGTTAATAGTCCTGCTTGGTGAATCTTCTTGCTTGTTATCTGTAGGTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAGGTTGGTTTTGTATTGGGATTTAGAGATATCCCTGGTCACTCAATTCTCTAGGTTTTATGATATACAAATAAAAATGGCTCATTTTCAATTGAAAAAAGAAATAATTTGATCTCTTGGCATTAGCTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGT</genome_strand>
        <mrna_strand>TGAGTTTCCGAGATGATAACACCGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGCTTCACT..................................................................................TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGCGACCTTAGACTTACCATTTCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG.................................................................................................................................................................................................................................................................ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT..................................................................................................GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG...........................................................................................GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG...........................................................................................................................CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261087" ref_strand="+" ref_description="SGN-E261087 [cLEG-65-M19]">
      <seq>tcgcactccagcaactcagtggagttaatggtgttttattctattccagtaacatcttcaaatcagctgcaagaggtgatgaactggagaattagacaacaaaaagtcgggaccacatctgatatcaggatgaagtttttgtagtagattcaagtaaaataggaatatcatccagtaaagcagcaacatttggtattggggctattcaggtcatcgtcactggtatctctgcatcactggtggacaaggcgggacgcaggctactcctcattgtatcctcatctgtaatgactgctagcagcttgcttgttgcaatgtcattcttcctgaaggagttcacctctgaaaattggcattcattctttgcagtattgtctctggttggacttgtggccttggtgatggcatttggtgttggattgggatccataccttggatcataatgtctgagattctgcctgtaagcatcaaaagtctgggtggcagtgttgcaactttggccaattggttttcagcatggattgttacaatgacagcaaatttgcttttaacttggagntaaggaggaacatttgctatctatgcactggtatcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="24371" stop="27744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24671" g_stop="24739" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24740" i_stop="25773" i_length="1034">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25774" g_stop="25866" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25867" i_stop="26081" i_length="215">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26082" g_stop="26128" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26129" i_stop="26202" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26203" g_stop="26265" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26266" i_stop="26350" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26351" g_stop="26410" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26411" i_stop="26535" i_length="125">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.073" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26536" g_stop="26595" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="392" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26596" i_stop="26721" i_length="126">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26722" g_stop="26781" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26782" i_stop="27217" i_length="436">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27218" g_stop="27332" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="567" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27333" i_stop="27410" i_length="78">
            <donor d_prob="0.533" d_score="0.96"/>
            <acceptor a_prob="0.663" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27411" g_stop="27444" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="601" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E261087" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24671" e_stop="24739"/>
          <exon e_start="25774" e_stop="25866"/>
          <exon e_start="26082" e_stop="26128"/>
          <exon e_start="26203" e_stop="26265"/>
          <exon e_start="26351" e_stop="26410"/>
          <exon e_start="26536" e_stop="26595"/>
          <exon e_start="26722" e_stop="26781"/>
          <exon e_start="27218" e_stop="27332"/>
          <exon e_start="27411" e_stop="27444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTGGTCAGTTCCGTTCCTTGATTATCTGTTAGAAATGCATACCTGAATTAGCAATAGGAGCGGGGATTTTCCATGGTGCGCACCCAAAGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAAGAAAAAGAAATGCATACCTGAATCATCAAATGATTTGAAACTGGCAGTTACAAGTATTATCACACCATTCTTTTTGTTCTTTACTCTGGCTGGTAGAAACAGAGTAAGTAACAACCCGGAGAGCAGAAATGGGAAAAAGAATTCCACGTTTTGCATGAAGAGTATAATGAATTTCTTCCTCTGCATCCTAGATAACACCCTGCAATAAATATGGGATGACGAAAGACTTCGTTTTGTGTGAGGGGGGAGAGCTCAAAAGACAAAGTTTGAAGTTTTGAACTATCAACTTATTCCATCTAAAAAAGAAACTATCAACTTATTAATAAGAAAAGTATTAAAGCTATTAACTGTAAAGGAACCGTAGAATGTATATCACCTGGTAAGATCAAGCCTACTTTTAAGGTACTCTTGAAAGAAAAAACAATAAGTTGACTAAACACAATAAACAGTTTCTTTTTAAGTTGTTTTGAATTTTTATTTTGATGTTTGTGAAAACGAAGTTTTGATATTTATGTCCTTTTCAAATTCCTTCCAGTACTTCTTGCTTTTGCTTGAACGTATGCCTGGAAAATCTGCTTGATGGAAATTGATATGGAACTTAGCCATATTTCATGAGTGTCCATTCAAATATGCCATGCCTTTTGAACTATCATTTTCATTTTGTTGGTACCTGAGAAATGATTCCCATGTTGTGATGATCTCTCAATCTAAGATAATATACCATTATCCAGATTCACATACACTGCAGTGCCAAAAGGTAATATGCCCTTAAGCAGATCGACATATACTACAGTTTGGGTAAACAGCTTTACCAAACACCAGCTAGAGACTTGTATATTCATTCATGACCCAACCATGTTGTAGCATGATATCCACCTTGAACAAAATTTTTGATTACATTGTCAGCAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAGGCAAGTTACTACGAACTATTGTCTTAATTCTACATTATCGCGTGCAGTATCCCACTCTAAGAAGGTATCACGAGCCTTCTCTTAATTTGCCAAATTAATTCCAGGTGTATCAGAATTAGACTTTATGTATAATACCGCCTAATCATAGAGACACTATGAAATGTTACAACTGGTTTGACATAGGAGTTTAATTGTAATGCTCTTCAAATTGGCAGGAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAGGTAAGCTGGTTCCCTTGGATCTAGTCTTAGTTTATATTTATATATTATTCCAAGTTGATGTACATCTTTTATAGGTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATTGTAAGCCCTTCCAGAAATTTCACATGAAGTTTCTATTGCTGAAAAATAAAACAAATGGATAACTTGATTATACTCTTTTCTTTAGGTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAGGTCAGTTGAATTTACATTCATAATAATTGATCAAGCAATTTCCTGAATTTAATGAGATCTCTTTCTTTCTGTCGGGATTGACTTTCTTTATATGTCATTCCACAAACTTTTTCTACTCAATCCAGGAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTGGTATAGTTCCTGTCTTACCTTCTATTGTTCCAACCCTATGATCCTAACCCCCCCCCCCTGCTCGCATCTCTGTTCCATTGTTGCATTCTAGCATATCTGAGACACTTAACGTATTAATTTTTACAGGCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAGGTATAACAAAGCTAATCTATAGTTCGGGAGACCAGGAAATATATATGTTCCTAAACATAATTAAAAATAGAGCATAGATGAAACTTGTAACATTTTCCGGAGAATGTGGTTGAGAAATTTGAGAAAAACTGACATACAGATCACCCCGTTAAAGGAGATAATATTAGTTTTAAAGGAAGATCAAGCATTATTGCAGGTTTCTTTAACATATTAAGTAACTGCCAGGACAAATTTTTGGTTCAAACTTTCTTCCTAGAAAATATTCTTACTGAACTTGAGATGTTATTCAAGGACACTAGCATAGGTTTTACGATTCTCTTTATTTTTTGGGATTTAAGAGCCTCACTGCTCTAATAAATAGTCCTATTGCACGACAATAGGAAGAATGATCTGTTTTTCATCTCTTGAGACATCAAGTTTTTAATTGGTTGTGCAGATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAGGTTTCTCTCTCTCTCTCCGTTTCTCTATTGGTATTCACACCATGCTTGGAGTGACTCTAAAGACTGTAAATTTGGCAGGAACATTTGCTATCTATGCACTGGTATCAGCTTT</genome_strand>
        <mrna_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG.......................................................................................................................................................................................................................GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG..........................................................................GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT.....................................................................................GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG.............................................................................................................................GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG..............................................................................................................................GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGNTAAGGAG..............................................................................GAACATTTGCTATCTATGCACTGGTATCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258137" ref_strand="+" ref_description="SGN-E258137 [cLEG-48-N10]">
      <seq>tcgcactccagcaactcagtggagttaatggtgttttattctattccagtaacatcttcaaatcagctgcaagaggtgatgaactggagaattagacaacaaaaagtcgggaccacatctgatatcaggatgaagtttttgtagtagattcaagtaaaataggaatatcatccagtaaagcagcaacatttggtattggggctattcaggtcatcgtcactggtatctctgcatcactggtggacaaggcgggacgcaggctactcctcattgtatcctcatctgtaatgactgctagcagcttgcttgttgcaatgtcattcttcctgaaggagttcacctctgaaaattggcattcattctttgcagtattgtctctggttggacttgtggccttggtgatggcatttggtgttggattgggatccataccttggatcataatgtctgagattctgcctgtaagcatcaaaagtctgggtggcagtgttgcaactttggccaattggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="24371" stop="27578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24671" g_stop="24739" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24740" i_stop="25773" i_length="1034">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25774" g_stop="25866" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25867" i_stop="26081" i_length="215">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26082" g_stop="26128" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26129" i_stop="26202" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26203" g_stop="26265" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26266" i_stop="26350" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26351" g_stop="26410" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26411" i_stop="26535" i_length="125">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.073" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26536" g_stop="26595" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="392" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26596" i_stop="26721" i_length="126">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26722" g_stop="26781" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26782" i_stop="27217" i_length="436">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27218" g_stop="27278" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="513" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E258137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24671" e_stop="24739"/>
          <exon e_start="25774" e_stop="25866"/>
          <exon e_start="26082" e_stop="26128"/>
          <exon e_start="26203" e_stop="26265"/>
          <exon e_start="26351" e_stop="26410"/>
          <exon e_start="26536" e_stop="26595"/>
          <exon e_start="26722" e_stop="26781"/>
          <exon e_start="27218" e_stop="27278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTGGTCAGTTCCGTTCCTTGATTATCTGTTAGAAATGCATACCTGAATTAGCAATAGGAGCGGGGATTTTCCATGGTGCGCACCCAAAGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAAGAAAAAGAAATGCATACCTGAATCATCAAATGATTTGAAACTGGCAGTTACAAGTATTATCACACCATTCTTTTTGTTCTTTACTCTGGCTGGTAGAAACAGAGTAAGTAACAACCCGGAGAGCAGAAATGGGAAAAAGAATTCCACGTTTTGCATGAAGAGTATAATGAATTTCTTCCTCTGCATCCTAGATAACACCCTGCAATAAATATGGGATGACGAAAGACTTCGTTTTGTGTGAGGGGGGAGAGCTCAAAAGACAAAGTTTGAAGTTTTGAACTATCAACTTATTCCATCTAAAAAAGAAACTATCAACTTATTAATAAGAAAAGTATTAAAGCTATTAACTGTAAAGGAACCGTAGAATGTATATCACCTGGTAAGATCAAGCCTACTTTTAAGGTACTCTTGAAAGAAAAAACAATAAGTTGACTAAACACAATAAACAGTTTCTTTTTAAGTTGTTTTGAATTTTTATTTTGATGTTTGTGAAAACGAAGTTTTGATATTTATGTCCTTTTCAAATTCCTTCCAGTACTTCTTGCTTTTGCTTGAACGTATGCCTGGAAAATCTGCTTGATGGAAATTGATATGGAACTTAGCCATATTTCATGAGTGTCCATTCAAATATGCCATGCCTTTTGAACTATCATTTTCATTTTGTTGGTACCTGAGAAATGATTCCCATGTTGTGATGATCTCTCAATCTAAGATAATATACCATTATCCAGATTCACATACACTGCAGTGCCAAAAGGTAATATGCCCTTAAGCAGATCGACATATACTACAGTTTGGGTAAACAGCTTTACCAAACACCAGCTAGAGACTTGTATATTCATTCATGACCCAACCATGTTGTAGCATGATATCCACCTTGAACAAAATTTTTGATTACATTGTCAGCAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAGGCAAGTTACTACGAACTATTGTCTTAATTCTACATTATCGCGTGCAGTATCCCACTCTAAGAAGGTATCACGAGCCTTCTCTTAATTTGCCAAATTAATTCCAGGTGTATCAGAATTAGACTTTATGTATAATACCGCCTAATCATAGAGACACTATGAAATGTTACAACTGGTTTGACATAGGAGTTTAATTGTAATGCTCTTCAAATTGGCAGGAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAGGTAAGCTGGTTCCCTTGGATCTAGTCTTAGTTTATATTTATATATTATTCCAAGTTGATGTACATCTTTTATAGGTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATTGTAAGCCCTTCCAGAAATTTCACATGAAGTTTCTATTGCTGAAAAATAAAACAAATGGATAACTTGATTATACTCTTTTCTTTAGGTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAGGTCAGTTGAATTTACATTCATAATAATTGATCAAGCAATTTCCTGAATTTAATGAGATCTCTTTCTTTCTGTCGGGATTGACTTTCTTTATATGTCATTCCACAAACTTTTTCTACTCAATCCAGGAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTGGTATAGTTCCTGTCTTACCTTCTATTGTTCCAACCCTATGATCCTAACCCCCCCCCCCTGCTCGCATCTCTGTTCCATTGTTGCATTCTAGCATATCTGAGACACTTAACGTATTAATTTTTACAGGCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAGGTATAACAAAGCTAATCTATAGTTCGGGAGACCAGGAAATATATATGTTCCTAAACATAATTAAAAATAGAGCATAGATGAAACTTGTAACATTTTCCGGAGAATGTGGTTGAGAAATTTGAGAAAAACTGACATACAGATCACCCCGTTAAAGGAGATAATATTAGTTTTAAAGGAAGATCAAGCATTATTGCAGGTTTCTTTAACATATTAAGTAACTGCCAGGACAAATTTTTGGTTCAAACTTTCTTCCTAGAAAATATTCTTACTGAACTTGAGATGTTATTCAAGGACACTAGCATAGGTTTTACGATTCTCTTTATTTTTTGGGATTTAAGAGCCTCACTGCTCTAATAAATAGTCCTATTGCACGACAATAGGAAGAATGATCTGTTTTTCATCTCTTGAGACATCAAGTTTTTAATTGGTTGTGCAGATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTT</genome_strand>
        <mrna_strand>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG.......................................................................................................................................................................................................................GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG..........................................................................GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT.....................................................................................GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG.............................................................................................................................GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG..............................................................................................................................GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746365" ref_strand="+" ref_description="SGN-E746365 [GI|47104279]">
      <seq>cttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacactactgcaaagttcactatcgtaatatcatgtaactttttgtcaatgaaaaggaaaacaactatgtgcttcctctgtaatattagttactatgtaatttgggttcagaatttgaaatcatcatcttaaacaaatatatacaaacatatattgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30489" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30189" g_stop="29470" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="810" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="878" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27669" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1188" r_length="310" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E746365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30189" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGTTA</genome_strand>
        <mrna_strand>CTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431114" ref_strand="-" ref_description="SGN-E431114 [STM-54-N22]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgcccttgcgtttataacaagtgtctcaagcagttccttacatccgtgcatgcagaaaaagcccaaaagtgaaggacagttctgcaaagttcattatcgtaatatcatgcaactttttgtttacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacacgaggaatacaaatatgtatgcaacaattagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="29853" stop="27406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29553" g_stop="29470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27670" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="551" r_length="309" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E431114" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29553" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACA-AATATATACAAACATATATTGCAAATTGCAGATGTT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGCCCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCGTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTTCTGCAAAGTTCATTATCGTAATATCATGCAACTTTTTGTTTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACACGAGGAATACAAATATGTA-TGCAACAATTAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431113" ref_strand="+" ref_description="SGN-E431113 [STM-54-N22]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagatgctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagcaaggcttggtggtgagctacaaagacactactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaagggaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaagaagcccatgagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctaccaaaaggagaaccactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttagacaatatatacaaatatgtattgctaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="29853" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29553" g_stop="29470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="175" r_length="91" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="243" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27671" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="550" r_length="307" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E431113" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29553" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAG-AAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGATGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGCAAGGCTTGGTGGTGAGCTACAAAGACACTACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGGAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAGAAGCCCATGAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACCAAAAGGAGAACCACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAGAC-AATATATACAAATATGTATTGCTAAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458950" ref_strand="+" ref_description="SGN-E458950 [cPRO-32-L12]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacaaatatatacaaatatgtattgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="29853" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29553" g_stop="29470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27671" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="550" r_length="308" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E458950" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29553" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGT</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACAAATATATACAAATATGTATTGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463351" ref_strand="+" ref_description="SGN-E463351 [cPRO-14-K10]">
      <seq>gttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctggaatattaggtactatgtaatttggggtcagaaattgaaattgttgtcttaaacaatatatacaaatatgtattgccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="29853" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29553" g_stop="29470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27672" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="548" r_length="306" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E463351" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29553" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATG</genome_strand>
        <mrna_strand>GTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGGAATATTAGGTACTATGTAATTTGGGGTCAGAAATTGAAATTGTTGTCTTAAAC-AATATATACAAATATGTATTGCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548898" ref_strand="+" ref_description="SGN-E548898 [TUS-65-H2](-)">
      <seq>tgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacactactgcaaagttcactatcgtaatatcatgtaactttttgtcaatgaaaaggaaaacaactatgtgcttcctctgtaatattagttactatgtaatttgggttcagaatttgaaatcatcatcttaaacaaatatatacaaacatatattgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="29965" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29665" g_stop="29470" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="286" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="354" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27674" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="659" r_length="305" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E548898" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29665" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGA</genome_strand>
        <mrna_strand>TGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610678" ref_strand="+" ref_description="SGN-E610678 [57844]">
      <seq>caacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaacaactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttgtcttaaacaaatatatacaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="28707" stop="27388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28407" g_stop="28374" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="102" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27978" g_stop="27683" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="398" r_length="296" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E610678" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28407" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCA</genome_strand>
        <mrna_strand>CAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAACAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATTGTTGTCTTAAACAAATATATACAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430661" ref_strand="-" ref_description="SGN-E430661 [STM-54-C23]">
      <seq>gcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaaggccctgctaaaagtggctgcttataagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaaggcttggtggtgagcaacaaagacacaactattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcataaacaaggcaggccatctggttcacctagaacgaccttgcgtttataacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagcccaaaagtgaaggacagtactgcaaagttcactatcgtaatatcatgcaactttttgtctacgaaaaggaaaataactatgtgtttcctctgtaatattagttactatgtaatttgggttcagaatttgaaattgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30035" stop="27414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29735" g_stop="29470" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="356" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27711" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="690" r_length="266" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E430661" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29735" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTT</genome_strand>
        <mrna_strand>GCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTATAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGCTTGGTGGTGAGCAACAAAGACACAACTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAAACAAGGCAGGCCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACAGTACTGCAAAGTTCACTATCGTAATATCATGCAACTTTTTGTCTACGAAAAGGAAAATAACTATGTGTTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAAT--TGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708861" ref_strand="+" ref_description="SGN-E708861 [FA36DH07]">
      <seq>cattaaaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgggtgagaagactacatttcatggcatagacaaggcagggcatctggttcacctagaacgaccttgcgnttatacaagtgtctcaagcagttccttacatccctgcatgcagaaaaagccaaaagtgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30327" stop="27540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30030" g_stop="29470" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="651" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="719" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27840" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="856" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E708861" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30030" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGG</genome_strand>
        <mrna_strand>CATTAAAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGNTTAT-ACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAG-CCAAAAGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701122" ref_strand="+" ref_description="SGN-E701122 [FA15AD04]">
      <seq>gacacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctctgttaagggtcttaaggccctgctaaaagtggctgcttacaagaagctttggttccctgatcgtcttcatagagattttctcgaggtaatgttcaccaacagaaaggaaagaggagagctgctagaagggttggtggtgagcaacaaagacacaagtattccaaattttccacagagaatacatctcctctggggtgagaatgatcaaattttcaatttggagcttgctcagaacatgaaacatcaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30500" stop="27911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30200" g_stop="29470" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28463" g_stop="28374" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="821" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28284" g_stop="28217" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="889" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27978" g_stop="27971" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="897" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E701122" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30200" e_stop="29470"/>
          <exon e_start="28463" e_stop="28374"/>
          <exon e_start="28284" e_stop="28217"/>
          <exon e_start="27978" e_stop="27971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAGGTTGGTTCATTTTTCTTTTATTTAACAAAAAGTTACAACTCTCTCTGTTTCACATGGATCGATCATGAGTATCAAAATATTTAGTTTTTTCATGTAAATTCGGACGTGAATCCTTCATGTTTACCGATGTATAAACTAAAAATTACTAGTTAGTTGGTTGTCACAGTATAGTATATCATTTACGTGTGGCTTTAATGCTCTCCACTGAGGAATCAGTTAACGGCAAACTAAAATGTTTATACTTTGAAAGTTTGGTAGAGGCAAAATTATATACAACAGTCTAACTATTTTTCTTTGCCAACAAAAGATAAAAAAGGGAAAATAAGAGAGGAGACAATTGAATTCATTAATAAGTTGAAGAAATTATGGCATACATTTTCCTACAAGGCCATAACTACATTTTACACATTTGTCAACAAAGAAGGAAAAAAAAAGGGGGGGCACCACGTAGACTTGCATAATTTGTGAGTTCATTATTACACATGTCATCCAGCCATATGTTATTGACATCACTGCCAGTTTGCTCAACCAACTAGACCTAACTGCTTTTACCGTTTTACGATCAACTATCTTCTACTTTTTTATCGTCATATATATGTGAATAAACCAAGTGACTAAAAAGCCCATTTCAGTCACTTCGTCAATTTCAAACCCGTTAGTGCAAGACAAATAAAATTCCAAGTTTCTTAACCAAATTCTTGAATGTCTCTCAAGTTTCTTTCGATAATATTAAAAGAGCAAGTTCATAACTTTGGTGAGATAAAATTAATAATCTTGGAGAGGAATTTTTGTATTTATAGACGAGAGAGTGTTGCTCGAATGGTAAACACTTCTCACTTTCAACCTAAAGGTTGTGAGTTCGAGTCACCAAAAGAGGTGGGAGCTCCCAGAGAGGGGGTAAAAAGAGAAAGGAATTTTTGTATTTATACTAATACAAGTATGCAACAACATTGATGTCATCGTTGTGATTCATATCTAAAATGTCCCTCACTTGACGATATGTCAGGTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAGGTAATTGGAATTTCATGAGTTCTATTCTTCAACATTTCACACAAAAAACTAGAAAACATAGCCATTTTTCCAACTTCTTTTTTTGGCAGAGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACAGTAAGTTTTCAGGCTTATATTATATACTCAAACAAACATATGAGCTCCAGGAGTAGTATACAAGATCTCACATTAGAAACTTTTTAACATAGAAGTTATAGTAATAAGTAGTTCAATAATGCACCATTTTAATATATGGCCCATGTATATAATTCAAACTACTACATCAACAATAATTTAGTACAAGTGCCACAGAGAATTTGAATAAACCTGATTGTTTTGCTTTACTTGATGCCAGTCAACTGG</genome_strand>
        <mrna_strand>GACACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG.........................................................................................AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA..............................................................................................................................................................................................................................................TCAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430660" ref_strand="+" ref_description="SGN-E430660 [STM-54-C23]">
      <seq>catttttcttcaaaagagatggtgaacttggtagaagcgctgaagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgctgaaaccataattcaaaaaacaaagaaaaacaaaaaaatcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggttaaggaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaggccctgctaaaagtggctgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30480" stop="29216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30196" g_stop="29515" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E430660" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30196" e_stop="29515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTAC</genome_strand>
        <mrna_strand>CATTTTTCTT-C-A--AAAGAGATGGTGAACTTGGTAGAAGCGCTGAAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGTTAAGGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTT-AGGCCCTGCTAAAAGTGGCTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573788" ref_strand="+" ref_description="SGN-E573788 [33153]">
      <seq>tcaaaagagatggtgaacttggtagaagcacagaagccattgttgcatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacaaagaaaaacaaaaaaagcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggctgatgaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattggcgatgactgattcgattagcactacgacgcttaatggtttgggattttcgtcttcgtcggagctgctgctgcctacttctgttaagggtcttaagggcctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30480" stop="29229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30183" g_stop="29529" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E573788" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30183" e_stop="29529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAA</genome_strand>
        <mrna_strand>TCAAAAGAGATGGTGAACTTGGTAGAAGCACAGAAGCCATTGTTGCATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAAGCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGATGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATTCGATTAGCACTACGACGCTTAATGGTTTGGGATTTTCGTCTTCGTCGGAGCTGCTGCTGCCTACTTCTGTTAAGGGTCTTAAGGGCCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746716" ref_strand="+" ref_description="SGN-E746716 [GI|51457951]">
      <seq>atggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttggggattttcatcttcttcggagctgctgctgcctacctctgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30474" stop="29249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30174" g_stop="29549" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E746716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30174" e_stop="29549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTT-GGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAA</genome_strand>
        <mrna_strand>ATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213701" ref_strand="+" ref_description="SGN-E213701 [cLEC-76-N7]">
      <seq>ttagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgctcaatggtttgggattttcatcttcttcggagctgctgctgcctacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30423" stop="29255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30123" g_stop="29555" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E213701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30123" e_stop="29555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTC</genome_strand>
        <mrna_strand>TTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311250" ref_strand="+" ref_description="SGN-E311250 [cLEZ-16-J7]">
      <seq>acaagaaatatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30504" stop="29307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30204" g_stop="29607" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E311250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30204" e_stop="29607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCA</genome_strand>
        <mrna_strand>ACAAGAAATATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430596" ref_strand="+" ref_description="SGN-E430596 [STM-53-N12]">
      <seq>tactaaaaaagaggcatttttcttcaaaagagatggtgaacttggtagaagcgcattagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgctgaaaccataattcaaaaaacaaagaaaaacaaaaaaatcacaaccactactcctctctccaacaatcaatgtgctatttcccctgaatccaccaccaaacccgacccgaacaaacccgtagtcgtactaatccacggcttcgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatccccgggttttcaagcagagtgtttgggtaaagggttaaggaaattgggcgtggagaattgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaagcgttggtggtgtctggatcgatattggcgatgactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30480" stop="29322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30211" g_stop="29622" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E430596" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30211" e_stop="29622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTACACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATT</genome_strand>
        <mrna_strand>TAC-TAAAAAAGAGGCATTTTTCTT-CAAA--A-GAGATGGTGAACTTGGTAGAAGCGCATTAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCTGAAACCATAATTCAAAAAACAAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAATCAATGTGCTATTTCCCCTGAATCCACCACCAAACCCGACCCGAACAAACCCGTAGTCGTACTAATCCACGGCTTCGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCCCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGTTAAGGAAATTGGGCGTGGAGAATTGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAAGCGTTGGTGGTGTCTGGATCGATATTGGCGATGACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304846" ref_strand="+" ref_description="SGN-E304846 [cLEX-10-N24]">
      <seq>aagaaacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30502" stop="29325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30202" g_stop="29625" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E304846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30202" e_stop="29625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTG</genome_strand>
        <mrna_strand>AAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543561" ref_strand="+" ref_description="SGN-E543561 [TUS-65-H2]">
      <seq>caagaaacatttttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtgggcgtttaagatggcggaaatgtttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30503" stop="29374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30203" g_stop="29674" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E543561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30203" e_stop="29674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGT-GGCGTTTAAGATGGCGGAAATGTTTCCA</genome_strand>
        <mrna_strand>CAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGGCGTTTAAGATGGCGGAAATGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462126" ref_strand="+" ref_description="SGN-E462126 [cPRO-10-P7]">
      <seq>catttttccttcaaaagagatggtgaacttggtagaagcgcagaagccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttcctgcctgaaaccataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30480" stop="29744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30196" g_stop="30044" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E462126" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30196" e_stop="30044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCT-TCTGAAACCATAAT</genome_strand>
        <mrna_strand>CATTTTTCCTTC-AA--AAGAGATGGTGAACTTGGTAGAAGCGCAGAAGCCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTGCCTGAAACCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287417" ref_strand="+" ref_description="SGN-E287417 [cLES-15-B9]">
      <seq>ttttttttttaattgattgataattatttaaacaaaaaaatcaatccttttggttttaaattcgttattaccatctggcgtccttcaaattctttggcaacttgaccattttatattctatatttatggtaatactactttaccatttatattaccaaaaaaaaataaaaaataaaaatttgttgttagggcaagactccgcagactgggtcggataaacccctcaagaaccccggaatcgccgccgcctgtcacatgacttctccaattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="48945" stop="49981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49245" g_stop="49681" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="445" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E287417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49245" e_stop="49681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTT</genome_strand>
        <mrna_strand>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308156" ref_strand="+" ref_description="SGN-E308156 [cLEY-14-I12]">
      <seq>ttctccaattgtcgaaatcaaaggagacattgacacggacgacctcaatgcgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49197" stop="50388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49497" g_stop="50088" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E308156" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49497" e_stop="50088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</genome_strand>
        <mrna_strand>TTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATGCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262999" ref_strand="+" ref_description="SGN-E262999 [cLEG-59-C6]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttgaggttcttcctgttaggaggtggaaagaagatagcttttgttatggctcatttgagaagatggaagaaggaatctgctttcttcaagagagccaagaagctttttgatgtccaaatcatacataccgagcctccgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49203" stop="50527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49503" g_stop="50227" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E262999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49503" e_stop="50227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255211" ref_strand="+" ref_description="SGN-E255211 [cLEG-31-F1]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49203" stop="50386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49503" g_stop="50086" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E255211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49503" e_stop="50086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256514" ref_strand="+" ref_description="SGN-E256514 [cLEG-38-C21]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49203" stop="50340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49503" g_stop="50040" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E256514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49503" e_stop="50040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257051" ref_strand="+" ref_description="SGN-E257051 [cLEG-44-O4]">
      <seq>aattgtcgaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgatttgttcaaacgtcaggaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49203" stop="50300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49503" g_stop="50000" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E257051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49503" e_stop="50000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATAT</genome_strand>
        <mrna_strand>AATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265849" ref_strand="+" ref_description="SGN-E265849 [cLEI-11-M2]">
      <seq>gaaatcaaaggagacattgacacggacgacctcaatccgttcactatgattctcccacaagatggccatgacaatgacgcctctccgcagcagcaaaaacagcaactccatttcctccaatccattaactcaaacgtagtcatcagacaacttccatctgaaggcctttctttccaactctggcctgccgctactattctcgtcactctccttgataacactcgtaacggcgaatcaactccgttttccgattggttcaaacgtcatgaaaaaggggtttcgctaccccttcgtattctcgaactgggttcaggaacaggtgttgttgggatagctgctgctgctattcttggtgctaaggttactgtcactgaccttcctcatgtgctgcctaatatacagttcaatgttgatgcaaactcacaagttttggaacaacagagtgggggtgttgatgttgcggcgcttagctggggggataaccagcatatggaggctgttggtagagattatgacctgattttgggatctgatgtggtgtaccatgatcacctctatgatcctctgattaacacgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49210" stop="50389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49510" g_stop="50089" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E265849" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49510" e_stop="50089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGA</genome_strand>
        <mrna_strand>GAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTGGTTCAAACGTCATGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595363" ref_strand="+" ref_description="SGN-E595363 [38635]">
      <seq>ttttttttataacttaattttgaatagagtgtatgtatgtagtgttctgttacatctcaggtagtgaatgttcaattaaaatgcaataatacacgactttctttgttgattgtatttccatgtaaagcaaaccccattgttatacatgacatgacaaaaagattcacactgacatcccaccaacatcaaaccttgattgactatagtggctatcttttcccggtgaaaaggtacacaaccaccccaatcctagacccatcgggcggaggctctgtatgtatgatttggacatcgaaaagcttcttagctctcttgaagaaaacagattccttcttccatcttttcaaatgagccataacaaaagctatcttctttccacctcctaacaggaagaacctcaacgtctcaatcagaggatcatagagatgatcatggtacaccacatcagatcccaaaatcaggtcataatctctaccaacagcctccatatgctggttatccccccagctaagcgccgcaacatcagcaaccccacattgctgttccaaaagcttggagtttgcatcaacattgaactgtatattaggcaacacatgaggaaagtcggtgacagttaacttagcaccaagaatagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="50796" stop="49548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50486" g_stop="50394" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="131" r_length="92" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50393" i_stop="50356" i_length="38">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50355" g_stop="49848" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="639" r_length="508" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E595363" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50486" e_stop="50394"/>
          <exon e_start="50355" e_stop="49848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGTATTTCCACGTAAAGCAAATACAGTAGTTTTTTACTTCTTTGTTGGGCTAACCCCATCCCCATTGTTATACATGACATGACAATAAGATTCAGACTGACATCCCACCAACATCTAGCCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTATACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCGGTATGTATGATTTGGACATCAAAAAGCTTCTTGGCTCTCTTGAAGAAAGCAGATTCCTTCTTCCATCTTCTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTGTTAATCAGAGGATCATAGAGGTGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAACACCCCCACTCTGTTGTTCCAAAA-CTTGTGAGTTTGCATCAACATTGAACTGTATATTAGGCAGCACATGAGGAAGGTCAGTGACAGTAACCTTAGCACCAAGAATAGCAGCA</genome_strand>
        <mrna_strand>TAGTGTTCTGTTACATCTC-AGGTAGTGAATGTTCAATTAAAATGCAATAATACACGACTTTCTTTGTTGATTGTATTTCCATGTAAAGCAAA......................................CCCCATTGTTATACATGACATGACAAAAAGATTCACACTGACATCCCACCAACATCAAACCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTACACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCTGTATGTATGATTTGGACATCGAAAAGCTTCTTAGCTCTCTTGAAGAAAACAGATTCCTTCTTCCATCTTTTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTCTCAATCAGAGGATCATAGAGATGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAGCAACCCCACATTGCTGTTCCAAAAGCTTG-GAGTTTGCATCAACATTGAACTGTATATTAGGCAACACATGAGGAAAGTCGGTGACAGTTAACTTAGCACCAAGAATAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541638" ref_strand="+" ref_description="SGN-E541638 [TUS-62-I13]">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49960" stop="50749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50260" g_stop="50457" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E541638" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50260" e_stop="50457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541645" ref_strand="+" ref_description="SGN-E541645 [TUS-62-I17]">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49960" stop="50749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50260" g_stop="50457" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E541645" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50260" e_stop="50457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548583" ref_strand="+" ref_description="SGN-E548583 [TUS-62-I17](-)">
      <seq>ttcaccgggaaaagatagccactatagtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49960" stop="50749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50260" g_stop="50448" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E548583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50260" e_stop="50448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTA</genome_strand>
        <mrna_strand>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299240" ref_strand="+" ref_description="SGN-E299240 [cLET-43-A14]">
      <seq>tcaccgggaaaagatagccactattgtcaatcaaggctagatgttggtgggatgtcagtctgaatcttattgtcatgtcatgtataacaatggggatggggttagcccaacaaagaagtaaaaaactactgtatttgctttacgtggaaatacaatcaacaaagaaagttgtgtattattgcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="49961" stop="50749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50261" g_stop="50457" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E299240" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50261" e_stop="50457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</genome_strand>
        <mrna_strand>TCACCGGGAAAAGATAGCCACTATTGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549482" ref_strand="+" ref_description="SGN-E549482 [TUS-70-N6](-)">
      <seq>tatgaaggcagttggaagaggctctcagttgaggaaaagatgataatgagaagttggatttgggaataaactgaatgttttgggttgctattggtggtattgatcccatttcttcatgctagccccatttaacatgttctgcaactcagttttaagctgtcatttatcctgaaagtaagacacttctgctctcaattcacaagggctgcaacgggttgctaatggtacaagtatgcaaccggagaatgacagtgctcctcatgaaggaacatgttataaacatttttttgcagattatgtccaacgtggaagcgaatgcaattgatttgatgttgtgtaatttttctgtattaaaatggatgagagctcttaacttgaggtggtttataacttaattttgagtagagttttgttacaactcaaggttgtgaatgttcaattaaaatgcaataatacacaactttctttgttgattgtaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="51187" stop="50111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50887" g_stop="50412" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E549482" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50887" e_stop="50412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGG-ATTAACTGAATGTTTTGGGTTGCTATTGGTGGCATTGATCCCATTTCTTCATGCTAGCACCATTTAACATGTTCTGCAGCTCAGTTTTAAGTTGCCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAAGTCACAAGGGCTGCAATGGGTTGCAAATGGTACAAGTGTGCAAGCCTAGAATGACAGTGCTCCTCAAGAAGTAACAAGTTATACACATTTTTTTTGCAGATTATGGCCAATGTAGAAGCGAATACAATTGATTTGATGTTGTGTATTTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGT-GTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGT</genome_strand>
        <mrna_strand>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGGAATAAACTGAATGTTTTGGGTTGCTATTGGTGGTATTGATCCCATTTCTTCATGCTAGCCCCATTTAACATGTTCTGCAACTCAGTTTTAAGCTGTCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAATTCACAAGGGCTGCAACGGGTTGCTAATGGTACAAGTATGCAACCGGAGAATGACAGTGCTCCTCATGAAGGAACATGTTATAAACA-TTTTTTTGCAGATTATGTCCAACGTGGAAGCGAATGCAATTGATTTGATGTTGTGTAATTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGTGGTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315449" ref_strand="+" ref_description="SGN-E315449 [cTOA-22-D17]">
      <seq>tataatccagaggtgttgcttaagagacttccaccagatgctctgtatgaagaacgtgcacttctgttggggaaaatgaatcaacatgaacttgcgctatctatttatgtgcacaagcttcatgttcctgaacttgcactgtcctattgtgatcgggtgtacgagtcaggacttcaacaacattccgcaaaatcttatggaaacatttacctgactctactgcaaatctatctcaatcccatgaagacaacaaaaaattttgagaagaaaattactaatctggtatcatctcagagccctgggattccaaaagttggttcaggaactccagcaaaggtaaaaggaggccgcttcaagaaaattgctgaaattgagggcgctgaggacactcgattcagtccaagtggcactgacagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="53850" stop="52336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53550" g_stop="53434" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53433" i_stop="52939" i_length="495">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52938" g_stop="52636" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="420" r_length="303" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E315449" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53550" e_stop="53434"/>
          <exon e_start="52938" e_stop="52636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTCCAGAGGTGTTGCTGAAGAGACTTCCACCAGATGCTCTGTATGAAGAACGTGCAATTCTTTTGGGGAAAATGAATAAACATGAACTTGCCCTGTCTATTTATGTGCACAAGGTATTTTTCCACCTTAACTGCACATGATATTTTAGGATTGGCTTTTATCTAATGCATTGGTGCTTTCGAGGGTATTTAAGGTATGCAAAAATCTAAAACTGTGCAAGTTCTCCATCATAAGCATTATAACAGACTTATATTGTGAACTTCACATTTGCTGTTAGATCGGTTGACTAATGTAGCAGTCATCTCAATAGTGCAATCATTTCACTCTTCTTTTAGTTAGTGTACCTGTTCGTCAGACATGTTAACCTTCTCATAGTTTAATTACATCATTGGATTTTGCATCGACCCTTTCTTTCTCTGTATGTTGTTGGGCTAGTATGCATTCCCAAGTCGGGATATTGGATATGTAATCTTTTTGTCATTAATACATGTCTAATTTTATGAATTTGATGGACATTGAAGTCTTTTCAGTTGTCTCTGTGTTGCATTTTATAAGCTTAAATTGTGGGTTTTTTCATACTGAATTGAATTTCTCTCTTTGATTTGTAGCTTCATGCTCCCGAACTTGCACTGTCCTATTGTGACCGGGTGTACGATTCAGGACTTCAACAACATTCAGCAAAATCTTACGGAAACATTTACCTGACTCTACTGCAAATCTATCTAAATCCTAGGAAGACAACAAAAAAATTTGAGAAGAAAATTACTAATCTGGTATCAGCTCAGAGCCCTAGGATTCCAAAAGTTGGTTTAGGAACTACAGGAAAGGTAAAAGGAGGCCGCTCCAAGAAAATTGCTGAAATTGGGGGCGCTGAGGACACTCGATTCAGTCTAAGCGGCACAGACAGTGGT</genome_strand>
        <mrna_strand>TATAATCCAGAGGTGTTGCTTAAGAGACTTCCACCAGATGCTCTGTATGAAGAACGTGCACTTCTGTTGGGGAAAATGAATCAACATGAACTTGCGCTATCTATTTATGTGCACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATGTTCCTGAACTTGCACTGTCCTATTGTGATCGGGTGTACGAGTCAGGACTTCAACAACATTCCGCAAAATCTTATGGAAACATTTACCTGACTCTACTGCAAATCTATCTCAATCCCATGAAGACAACAAAAAATTTTGAGAAGAAAATTACTAATCTGGTATCATCTCAGAGCCCTGGGATTCCAAAAGTTGGTTCAGGAACTCCAGCAAAGGTAAAAGGAGGCCGCTTCAAGAAAATTGCTGAAATTGAGGGCGCTGAGGACACTCGATTCAGTCCAAGTGGCACTGACAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730655" ref_strand="+" ref_description="SGN-E730655 [LA24DB04]">
      <seq>ccatgaatgtctctttaagtattttatggaacaatgcttcgccaaaacagttatctgattattttttcttttttgggcagcccctttgtgcaactgaccccatgcttgtcctggagttctcattgcctgttcttgaaagctgtccgatgcaaaccattgagctatttttgtctggtaacattccagcagacttggtgaattcttacttaaagcagcatgctccagacatgcaggcaacatatctagaactcatgcttgccatgaatgaaaatagtatctcagggaatctgcagaatgaaatggtagaggcacttgtccatctgtctggttttatgtagcttctctctgtctttccccttttgtaccttttatttcataaaaaccattaaagcaacattgcttcaagtgaagccagaaagctgaggcttatagttctcctcgtgatatgggcatatgtctaatgaagctcacatgtttaggcttctttgaactcaaatctttgagaaaccctgagtgacaaaatttaggaacaattatcttgcctcctactgtttctcagggataaagattttgctcggactcttcaaaatgggtgcgtgttggatcctccaaaagtagtgtatttttggaggatcgaacacagtcggagtaacatttttggagagtccgctcaacagtcttttgtgcttcaatccatgcgtctgacaaaatgttgagtgtttatgtgattatgataaattcgcttagcaacttgtggcaggtgcaaatttatctctcagaagtgcttgattttcatgctgaacataattcacagcaaaagtgggatgagaaaacatgtccctccaccaaggaaaaagctactgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="54734" stop="53271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54436" g_stop="53571" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E730655" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54436" e_stop="53571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAATCTCTCTTTAAGTATTTTATGGAACAATGCTTCGCCAAAACAGTTATCTGATTATTTTTTCTTTTTTGGGCAGCCCCTTTGTGCAACTGACCCCATGCTTGTCCTGGAGTTCTCATTGCCTGTTCTTGAAAGCTGTCCGATGCAAACCATTGAGCTATTTTTGTCTGGTAACATTCCAGCAGACTTGGTGAATTCTTACTTAAAGCAGCATGCTCCAGACATGCAGGCAACATATCTAGAACTCATGCTTGCCATGAATGAAAATAGTATCTCAGGGAATCTGCAGAATGAAATGGTAGAGGCACTTGTCCATCTGTCTGGTTTTATGTAGCTTCTCTCTGTCTTTCCCCTTTTGTACCTTTTATTTCATAAAAACCATTAAAGCAACATTGCTTCAAGTGAAGCCAGAAAGCTGAGGCTTATAGTTCTCCTCGTGATATGGGCATATGTCTAATGAAGCTCACATGTTTAGGCTTCTTTGAACTCAAATCTTTGAGAAACCCTGAGTGACAAAATTTAGGAACAATTATCTTGCCTCCTACTGTTTCTCAGGGATAAAGATTTTGCTCGGACTCTTCAAAATGGGTGCGTGTTGGATCCTCCAAAAGTAGTGTATTTTTGGAGGATCGAACACAGTTGGAGTAACATTTTTGGAGAGTCCGCTCAACAGTCTTTTGTGCTTCAATCCATGCGTCTGACAAAATGTTGAGTGTTTATGTGATTATGATAAATTCGCTTAGCAACTTGTGGCAGGTGCAAATTTATCTCTCAGAAGTGCTTGATTTTCATGCTGAACATAATTCACAGCAAAAGTGGGATGAGAAAACATGT-CCTCCACCAAGGAAAAAGCTACTGTCTG</genome_strand>
        <mrna_strand>CCATGAATGTCTCTTTAAGTATTTTATGGAACAATGCTTCGCCAAAACAGTTATCTGATTATTTTTTCTTTTTTGGGCAGCCCCTTTGTGCAACTGACCCCATGCTTGTCCTGGAGTTCTCATTGCCTGTTCTTGAAAGCTGTCCGATGCAAACCATTGAGCTATTTTTGTCTGGTAACATTCCAGCAGACTTGGTGAATTCTTACTTAAAGCAGCATGCTCCAGACATGCAGGCAACATATCTAGAACTCATGCTTGCCATGAATGAAAATAGTATCTCAGGGAATCTGCAGAATGAAATGGTAGAGGCACTTGTCCATCTGTCTGGTTTTATGTAGCTTCTCTCTGTCTTTCCCCTTTTGTACCTTTTATTTCATAAAAACCATTAAAGCAACATTGCTTCAAGTGAAGCCAGAAAGCTGAGGCTTATAGTTCTCCTCGTGATATGGGCATATGTCTAATGAAGCTCACATGTTTAGGCTTCTTTGAACTCAAATCTTTGAGAAACCCTGAGTGACAAAATTTAGGAACAATTATCTTGCCTCCTACTGTTTCTCAGGGATAAAGATTTTGCTCGGACTCTTCAAAATGGGTGCGTGTTGGATCCTCCAAAAGTAGTGTATTTTTGGAGGATCGAACACAGTCGGAGTAACATTTTTGGAGAGTCCGCTCAACAGTCTTTTGTGCTTCAATCCATGCGTCTGACAAAATGTTGAGTGTTTATGTGATTATGATAAATTCGCTTAGCAACTTGTGGCAGGTGCAAATTTATCTCTCAGAAGTGCTTGATTTTCATGCTGAACATAATTCACAGCAAAAGTGGGATGAGAAAACATGTCCCTCCACCAAGGAAAAAGCTACTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708348" ref_strand="+" ref_description="SGN-E708348 [FA35CA12]">
      <seq>ccgttgaagcaacaatgctgtcattgttgctcttgataattccgtttttggatttttccctgttcctctcggtgcacagattgtacaactaacagcctctggaaactttgaggaggccttggctttgtgcaaattgctaccaccagaagattcaagtcttagatctgcaaaggagcaatcaattcatataagatatgcacacttcctgtttgaaaatgggagctatgaagaagcaatggaacattttctggcatctcaagttgaactcacttatgtgcttgccttatatccatccattattgttccaaaatcatctttcatacctgaaccacagaaatttgtggaagttggggatgcaccgtatctctcccgagcttcctctggtctgtcagatgatctggattctacgccttcacatgtcttagaatctgatgaaatggatatagaatccaaaaaaatgagtcacaacactttgatggctctgattaagtatttacagaagagaagatacagtgttgttgagaaagccacaactgagggcacttaagaggtcgtttcagatgctgtcggagataatttcatttcttatggaactagccggtccaaaaaaccaaccaagggcagaattcatgctccaatcacttccatcgctagggatatggctgcaatactggacactgcacttcttcaagctcttatattaactggacagttctcagcagctacagattttctgaaagtcctcaactactgtgatgtgaaaatatgtgaggagttcctgcaaaaaaaaagccagtatgcttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="57683" stop="54512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57380" g_stop="57268" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="192" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57267" i_stop="55962" i_length="1306">
            <donor d_prob="0.618" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55961" g_stop="55535" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="619" r_length="427" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55534" i_stop="54999" i_length="536">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54998" g_stop="54812" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="806" r_length="187" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E708348" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57380" e_stop="57268"/>
          <exon e_start="55961" e_stop="55535"/>
          <exon e_start="54998" e_stop="54812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTACAACTAACAGCATCTGGAAACTTTGAGGAGGCCTTGGCTTTGTGCAAATTGCTACCACCAGAAGATTCCAGTCTTAGATCTTCAAAGGAGCAGTCAATTCATATGAGGTGATTGCCCCCTTCCCTTGTCCCCACCGCCCCTCTTCTGCACTAACTTTGTGCTAAGTTGTAAGTCAATAGCAACAGCATCTCACTTAGATCATTTTCAGCACCTTCTTGTTTATATAATTATATTAATGAAAGTTAATTTTTACCTGAACCAAACAAAAATATATCTCATTGAAGTCATGGTTACATTGAACCTCCTGCCTGGGGTGGGGGGTGGGTGCGTGATTTAACCAAATATTATGTGTTAACGTTGCAGTTCAATGGCAATAGTCTCCTGTTATGTCAAATCTATTGAAATTGCATCTTTTAGTATATGATGTTATGGTGTATACGTGTTTATATCTAGCACAAGTTATAAATTGATATGGGTCCATTTCGAGGCTGATATCAATGTAGCTGTGAAGTCTTAATTTAAAACTTTTAGATCAAGAATCGGCCAAAAATTTGTGGAAACATCTGTAGTTGATATTCTTTATAACTAGGGATTTGTTCTTTCTTCTAGAGTGCTTTTGAAATCCTCAACTCGGAAAGTTTTGGCTTGTTAATGGCTTTGATAATGTGGGTTCTAACAAAGTATGTCACATATCTTGATAAAGATTAGATTATATAGAGGCTATATGGAAATTAATTCTTGTAGAAAACTTGGAAACATCTTTGATAAAATGTAGGCTTCAACCAAAATGTGAAATTATTGATAATGTACATTTATTTCTTTGGATAGGAACAATGTATAGGGTATTAGCACCATAAACTTATTTGAGGTGTTATGTTTGCTTAAAGTTTTACTTCATCCAGTGTAGTACGCATGAGTAGTAAGACTGACAGCATACTGGCTTGACCAGGAAACTGTCCTGGCTCGATTTTCTAGTCAGTTTCTTTTTCCCAGGAAAGATGAAATAAGAACAACACCCAAGGGTGAGGCCTAGAGGCTAATGTAATTGAAAAGGCCCTGGGAGACCAGGGCTAGAATTTCAGCAAAGGCGAAAAAATATAGGTGATTACTTCTAATCCTGCTATACCTTGGTGGGCAGGGTCAACCAGTACGTGTGCTTGTGGGAGGTAGAAGGTAACACGGATTATTCGAGGTTTGAACAATCTGTCATTTACACCATTGTTGTGGGAAAAAATTGAAATATGAACATTGCTTGGCAAGAAGTTACTAAATACAACTTGGTTCTTCTCTTTTATTGTTCTTTCCATTTTTTGTAGTTTTAGCTCATATAGTTTGTTTTTTTTTGGGAAAGAAGGAATGAAACGAAATGTGAAACTAATATACATGAAGATTGATAATAAATCTTTGATTCAGATATGCGCACTTTCTATTTGAAAATGGGAGCTATGAAGAAGCAATGGAACATTTTCTGGCATCTCAAGTTGAAATCACTTATGTGCTCGCCTTATATCCATCCATTATTGTTCCAAAATCATCTTGCATACCTGAACCACAGAAATTTGCAGATGTTGCAGATGCACCATATCTCTCCCGAGGCTCTTCTGGTCTGTCAGATGATCTAGATTCTCCGTCTTCGGATGTATTTGAATCTGATGAAATGGATATAGAGTCCAAGAAAATGAGCCACAACACTTTGATGGCTCTGATTAAGTATTTGCAGAAAAAGAGATACAGTGTCATTGAGAAAGCAACAACTGAGGGAACTGAAGAAGTGGTTTCAGATGCTGTTGGAGATAATTTCATTTCTTATGGAACTGACCGGTCCAAAAAACCAACCAAGGTAACTTTTCAATGTGTCTTGTGCCTTCCATAAACAGCTTTTCGGGGAAATCTTTTTTGTTGAATAAGTTCTCAATTGGAAGTCAAAGTTTTGACATTAAGCATATCTCTTCTTGATAACTGTGACTAGCAATGTATTTAGTATTTTCAGCAAAGCTTTCTAGAAATCCCAAAGATATGCAGTTGGCAGCGCGCATTATATTGAGCTGTTTAACATGTACCTTTCTTTGCATCAAAGCATAAATACCTTTCTGGCTGCATGTGTTTGATCATTTATGAATTTGATGGATTATTCAAGTCATCGATCATTTATAGCCTTCTGAAAAATACTGTTTCATTTGTATCTTCCAAAAGTCTGATGTCAGGTAGGTAAGTTCTGATTCTTCCATATGCAAAAGTACTGGCTTATTCTAGTGAGCCTACTGAAGGGAGAAACCACTTACGCCTCAAAGAGCTGTTAGTACTTGGATAATTTCTACTTAGCTGTATTACTTGCCTAATTTAAATCTAAAATGTGTTTTTCTTTGATCCATTTAGGGCAGAATTCATATTCCTATCACTTCCATCGCTAGGGACATGGCTGCAATACTGGACACTGCACTTCTTCAAGCTCTGTTTTTAACTGGACAGTCCTCTGCTGCTACAAATTTTCTGAAAGTCCTCAACTACTGTGATGTGAAAATATGCGATGCGTTCCTGCAAGAGAGAAGCCAGTATGCTTGTC</genome_strand>
        <mrna_strand>ATTGTACAACTAACAGCCTCTGGAAACTTTGAGGAGGCCTTGGCTTTGTGCAAATTGCTACCACCAGAAGATTCAAGTCTTAGATCTGCAAAGGAGCAATCAATTCATATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCACACTTCCTGTTTGAAAATGGGAGCTATGAAGAAGCAATGGAACATTTTCTGGCATCTCAAGTTGAACTCACTTATGTGCTTGCCTTATATCCATCCATTATTGTTCCAAAATCATCTTTCATACCTGAACCACAGAAATTTGTGGAAGTTGGGGATGCACCGTATCTCTCCCGAGCTTCCTCTGGTCTGTCAGATGATCTGGATTCTACGCCTTCACATGTCTTAGAATCTGATGAAATGGATATAGAATCCAAAAAAATGAGTCACAACACTTTGATGGCTCTGATTAAGTATTTACAGAAGAGAAGATACAGTGTTGTTGAGAAAGCCACAACTGAGGGCACTTAAGAGGTCGTTTCAGATGCTGTCGGAGATAATTTCATTTCTTATGGAACTAGCCGGTCCAAAAAACCAACCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAATTCATGCTCCAATCACTTCCATCGCTAGGGATATGGCTGCAATACTGGACACTGCACTTCTTCAAGCTCTTATATTAACTGGACAGTTCTCAGCAGCTACAGATTTTCTGAAAGTCCTCAACTACTGTGATGTGAAAATATGTGAGGAGTTCCTGCAAAAAAAAAGCCAGTATGCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547113" ref_strand="+" ref_description="SGN-E547113 [TUS-70-N6]">
      <seq>tggaagtcccaagctcaaaccactgggccaccccgaagttataatatatccatagaatctatatcctcaaagttttcttcattgtatataaaagagcaaatgtagcacattgtccaaatttttatgctgcctcatctctttgaatattatgtggtttgactaggagtgcaaactaagaaatttgtttgaattgtatatcacattcatgtggtggaaaagatcaagttaaatattggagttcatgtgaacggctggtttgattggaaaatataagactgcgatataattagactcgaaagtttaatttgggaagtcatccaaagtgaactgtgtaatatatgtcagatgggtgtatattctagtaccagtgtaatttgtctttatgatttaccgtaactgaagtgccctcagtcaataaatatcggtgtttagctgaggtgatggatattggagattgaagaatgttagtgatcaaaacagtatgtagaaccttgtactttaaggtttggaatgtagactcttggattactattatggatcctaggcccatctactgttcaactcaagtaccaccatctttagccttcatcttgtagaactcactacgatcccaggtggccccatagagccgagttctgatgcctaagtgagtgttgaccaaaaatttctaggtgttgaccaaggtagaagaaagattgacacaaccttagcaccaaaagctagctattaaggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="59046" stop="57709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58746" g_stop="58009" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E547113" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58746" e_stop="58009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGTTATAATATATCCATAGAATCTATATCCTCAAAGTTTTCTTCATTGTATATAAAAGAGCAAATGTAGCACATTGTCCAAATTCTTATGCTGCCTCATCTCTTTGAATATTATGTGGTTTGACTAGGAGTGCAAACTAAGAAATTTGTTTGAATTGTATATCACATTCATGTGGTGAAAAAGATCAAGTTAAATATTGGAGTTCATGTGAACGGCTGGTTTGATTGGAAAATATAAGACTGCAATATAGTTTAGACTCGAAAGTTTAATTTGGGAAGTCATCCAAAGTGAACTGTGTAATATACGTCAGATGGGGGTGTATTCTAGTACCAGTGTATTTTGTCTTTATGATTTACCGTAACTGAAGTGCCCTCAGTCAATAAATATCGGTGTTTAGCTGAGGTGATGGATATTGGAGATTGAAGAATGTTAGTGATCAAAACAGTATGTTGAACCTTGTACTTTAAGGTTTGGAATGTAGACTCTTGGATTACTATTATGGATCCTAGGCCCATCTACTGTTCAACTCAAGTACCACCATCTTTAGCCTTCAACTTGTAGAACTCACTACGATTCCAGGTGGCCCCATAGAGCCGAGTTCTGATGCCTAAGTGAGTGTTGACCAAAAACTTCTAGGTGTTGACCAAGGTAGAAGAAAGATTGACACAACCTTAGCACCAAAAGCTAGCTATTAAGGTGGGA</genome_strand>
        <mrna_strand>TGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGTTATAATATATCCATAGAATCTATATCCTCAAAGTTTTCTTCATTGTATATAAAAGAGCAAATGTAGCACATTGTCCAAATTTTTATGCTGCCTCATCTCTTTGAATATTATGTGGTTTGACTAGGAGTGCAAACTAAGAAATTTGTTTGAATTGTATATCACATTCATGTGGTGGAAAAGATCAAGTTAAATATTGGAGTTCATGTGAACGGCTGGTTTGATTGGAAAATATAAGACTGCGATATA-ATTAGACTCGAAAGTTTAATTTGGGAAGTCATCCAAAGTGAACTGTGTAATATATGTCAGATGGGTGTATATTCTAGTACCAGTGTAATTTGTCTTTATGATTTACCGTAACTGAAGTGCCCTCAGTCAATAAATATCGGTGTTTAGCTGAGGTGATGGATATTGGAGATTGAAGAATGTTAGTGATCAAAACAGTATGTAGAACCTTGTACTTTAAGGTTTGGAATGTAGACTCTTGGATTACTATTATGGATCCTAGGCCCATCTACTGTTCAACTCAAGTACCACCATCTTTAGCCTTCATCTTGTAGAACTCACTACGATCCCAGGTGGCCCCATAGAGCCGAGTTCTGATGCCTAAGTGAGTGTTGACCAAAAATTTCTAGGTGTTGACCAAGGTAGAAGAAAGATTGACACAACCTTAGCACCAAAAGCTAGCTATTAAGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360704" ref_strand="+" ref_description="SGN-E360704 [cLPP-7-J14]">
      <seq>ggaagtcccaagctcaaaccactgggccaccccgaagttataatatatccatagaatctatatcctcaaagttttcttcattgcatataaaagagcaaatgtagcacattgtccaaatttttatgctgcctcatctctttgaatattatgtggtttgactaggagtgcaaactaagaaatttgtttgaattgtatatcacattcatgtggtggaaaagatcaagttaaatattggagttcatgtgaacggctggtttgattggaaaatataatactgcgatataattagactcgaaagtttaatttgggaagtcatccaaagtgaactgtgtaatatatgtcagatgggtgtatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="59045" stop="58087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58745" g_stop="58387" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E360704" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58745" e_stop="58387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGTTATAATATATCCATAGAATCTATATCCTCAAAGTTTTCTTCATTGTATATAAAAGAGCAAATGTAGCACATTGTCCAAATTCTTATGCTGCCTCATCTCTTTGAATATTATGTGGTTTGACTAGGAGTGCAAACTAAGAAATTTGTTTGAATTGTATATCACATTCATGTGGTGAAAAAGATCAAGTTAAATATTGGAGTTCATGTGAACGGCTGGTTTGATTGGAAAATATAAGACTGCAATATAGTTTAGACTCGAAAGTTTAATTTGGGAAGTCATCCAAAGTGAACTGTGTAATATACGTCAGATGGGGGTGTATTC</genome_strand>
        <mrna_strand>GGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGTTATAATATATCCATAGAATCTATATCCTCAAAGTTTTCTTCATTGCATATAAAAGAGCAAATGTAGCACATTGTCCAAATTTTTATGCTGCCTCATCTCTTTGAATATTATGTGGTTTGACTAGGAGTGCAAACTAAGAAATTTGTTTGAATTGTATATCACATTCATGTGGTGGAAAAGATCAAGTTAAATATTGGAGTTCATGTGAACGGCTGGTTTGATTGGAAAATATAATACTGCGATATA-ATTAGACTCGAAAGTTTAATTTGGGAAGTCATCCAAAGTGAACTGTGTAATATATGTCAGATGGGTGTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328699" ref_strand="+" ref_description="SGN-E328699 [cTOC-23-E12]">
      <seq>ctacccaaatcaatcagggaagaagaaagatggtgcacactgcctacgataccttccaactcctcaataattctccctccaaaatcgatgccattgaatcataccgctcaaatttgctcatcgcatgttccgatggatcgctccgtgtttacgttccagaatcctcagtttccgatcaatctgatttccattccgaaaccttagggcttcatcaaggaccatatgtgcttgaaagaactctgaatggattctccagaagacaaatgctggccatggaagtcctcgtctcacgagaacttctgctttccctctccgagtcaattgcgttacatcgattgcctgatttggagactttatcagtgattactaaggctaaaggtgcaaatgtatattcgtgggatgataaacgagggttactttgcttcggcaggcaaaaaagagtctgtatttacaaacacgacggggggagtggatttgtggaggtgaaagaatttggagtacctgacacagttaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaagagagtacaagatattgaataccactaatggtgtattgtctgaggtgttctcttcaggnaggatcgccgcacctcttgtggtggctcttccacccggagaactacttttgggcaaggataatattggtatcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="62151" stop="60289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61851" g_stop="61390" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61389" i_stop="60817" i_length="573">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60816" g_stop="60605" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="674" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E328699" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61851" e_stop="61390"/>
          <exon e_start="60816" e_stop="60605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCAAATCAATCAGGGAAGAAGAAAGATGGTGCACACTGCCTACGATACCTTCCAACTCCTCAATAATTCTCCCTCCAAAATCGATGCCATTGAATCATACCGCTCAAATTTGCTCATCGCATGTTCCGATGGATCGCTCCGTGTTTACGTTCCAGAATCCTCAGTTTCCGATCAATCTGATTTCCATTCCGAAACCTTAGGGCTTCATCAAGGACCATATGTGCTTGAAAGAACTCTGAATGGATTCTCCAGAAGACAAATGCTGGCCATGGAAGTCCTCGTCTCACGAGAACTTCTGCTTTCCCTCTCCGAGTCAATTGCGTTACATCGATTGCCTGATTTGGAGACTTTATCAGTGATTACTAAGGCTAAAGGTGCAAATGTATATTCGTGGGATGATAAACGAGGGTTACTTTGCTTCGGCAGGCAAAAAAGAGTCTGTATTTACAAACACGACGGTAATGACTTGAATGTAATTTAATTGTTGTATTGTTAATTGAAAATTTTATATTATTGTCACGGCAATGCGGTTTCGTGCATGTGTACTAGATCAGTCTCTGCCATATGTGAAAGGAAAAAGGAACTACTTTTCTCTATGGGCTGATCAATCATTTAATGATGTTACAAACATAATGTAGAACTGTGCTTTCCCACTATCAAGTGGACGTAGAGATATTATATATGTTATAATAATCGCTGGAAAGATTGTTTGATGTAAAAAACATAAGATAATGCCCAAAATAATTGAATAATTTAATGATTTGAATTTTTGGAAGTTGTATAGAAACAGAATGGTTCAAACATTTTGTGACATCCGAAAATAGCCGAGTGTTACATAAATTGGGACAGGGGAGTATAGTTTTTGGTTCACTACATTTAGTTTAACACAAGTATCATAAAGGCCTGTAATTTCTTTTTCCTTTGATTATCAGGTTTGTTGCCTAAAGCAGTTTGGATACTGATGATCGTATTTGTCTAATGATATAAGAACTCTATTGCTGTAACCTGATTTTTATTTGGAACTTCTATAGGGGGGAGTGGATTTGTGGAGGTGAAAGAATTTGGAGTACCTGACACAGTTAAGTCGATGTCATGGTGTGGTGAGAATATTTGCTTGGGGATTAGAAGAGAGTACAAGATATTGAATACCACTAATGGTGTATTGTCTGAGGTGTTCTCTTCAGGGAGGATCGCCGCACCTCTTGTGGTGGCTCTTCCACCCGGAGAACTACTTTTGGGCAAG</genome_strand>
        <mrna_strand>CTACCCAAATCAATCAGGGAAGAAGAAAGATGGTGCACACTGCCTACGATACCTTCCAACTCCTCAATAATTCTCCCTCCAAAATCGATGCCATTGAATCATACCGCTCAAATTTGCTCATCGCATGTTCCGATGGATCGCTCCGTGTTTACGTTCCAGAATCCTCAGTTTCCGATCAATCTGATTTCCATTCCGAAACCTTAGGGCTTCATCAAGGACCATATGTGCTTGAAAGAACTCTGAATGGATTCTCCAGAAGACAAATGCTGGCCATGGAAGTCCTCGTCTCACGAGAACTTCTGCTTTCCCTCTCCGAGTCAATTGCGTTACATCGATTGCCTGATTTGGAGACTTTATCAGTGATTACTAAGGCTAAAGGTGCAAATGTATATTCGTGGGATGATAAACGAGGGTTACTTTGCTTCGGCAGGCAAAAAAGAGTCTGTATTTACAAACACGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGTGGATTTGTGGAGGTGAAAGAATTTGGAGTACCTGACACAGTTAAGTCGATGTCATGGTGTGGTGAGAATATTTGCTTGGGGATTAGAAGAGAGTACAAGATATTGAATACCACTAATGGTGTATTGTCTGAGGTGTTCTCTTCAGGNAGGATCGCCGCACCTCTTGTGGTGGCTCTTCCACCCGGAGAACTACTTTTGGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712424" ref_strand="+" ref_description="SGN-E712424 [FB04DC07]">
      <seq>gataaattgccctacccccagcatcttctctttccatccgaacttgaacaagagcgatgtgtggtgcgtgggcatgcatccaagattttccatcctttcttttctcctcgagacttcaaagtgaactctggggaactgaaaagtaagctgatggtgaattttgatccagtaaggtgctttattgccgatatcgagaaaggatttcccgatgtggtcaaggtttggtacgatgctgtgggtggtgatgctcttggtcttacactaggaaaagcaagttcacagaaacggaagcatgatgactccgcggaggagagcacagatcttttgaatacgctaaaaaccataggcgaggttgggaaaggccttgtgagaagtattcatgttgtcaaggcccgaaaggcgtgataattgaaatgttcaaaagaatgtacactatgggtattgttatcaaggttaccggccggtagggagctcttcaaattttgcagcacaacttttgtacatgtgtagtctcttgtcgaagagccaacaatcacttgtatttgtaattgtattgagaaattcattttataattcgagaaaaagaagaaaaaagagaactgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="64410" stop="62845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64110" g_stop="64059" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64058" i_stop="63919" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63918" g_stop="63776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="195" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63775" i_stop="63627" i_length="149">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63626" g_stop="63540" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="282" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63539" i_stop="63467" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63466" g_stop="63144" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="605" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63143" i_stop="63080" i_length="64">
            <donor d_prob="0.502" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63079" g_stop="63072" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="613" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E712424" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64110" e_stop="64059"/>
          <exon e_start="63918" e_stop="63776"/>
          <exon e_start="63626" e_stop="63540"/>
          <exon e_start="63466" e_stop="63144"/>
          <exon e_start="63079" e_stop="63072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATTGCCCTACCCCCAGCATCTTCTCTTTCCATCCGAACTTGAACAAGGTTCTTTTTCTCATCTTACTTTGTAATTGCATTTGTTTCCACATGATATCTACCTCTATTTCCTCCCCCATTTTCACCCATTAAGCATTGAAACTCCTGTACTAATTAAGAGTCTGAAACACTTCCATTTTTTTTTCTAGAGCGATGTGTGGTGCGTGGGCATGCATCCAAGATTTTCCATCCTTTCTTTTCTCCTCGAGACTTCAAAGTGAACTCTGGGGAACTGAAAAGTAAGCTGATGGTGAATTTTGATCCAGTAAGGTGCTTTATTGCCGATATCGAGGCAAGTACTTACATTTGCTGATATTTTTTCCACTGAGGTGCTAGTCAGTTATTCAATCCCTTGAATCCCATCGTTCCTGTGATTCTGAGGATCACCCATTTCTTCTTGCCCATATGTGACCCATTTCTTCTTGCCCATATGTGATGCAGAAAGGATTTCCCGATGTGGTCAAGGTTTGGTACGATGCTGTGGGTGGTGATGCTCTTGGTCTTACACTAGGAAAAGCAAGTTCACAGGTATGCTTTCTAGTTGTATTGAAGTAACAATGATGGTTTAGTAACAAGATTGTAATTGTGGTCTGTTCTCCAGAAACGGAAGCATGATGACTCCGCGGAGGAGAGCACAGATCTTTTGAATACGCTAAAAACCATAGGCGAGGTTGGGAAAGGCCTTGTGAGAAGTATTCATGTTGTCAAGGCCCGAAAGGCGTGATAATTGAAATGTTCAAAAGAATGTACACTATGGGTATTGTTATCAAGGTTACCGGCCGGTAGGGAGCTCTTCAAATTTTGCAGCACAACTTTTGTACATGTGTAGTCTCTTGTCGAAGAGCCAACAATCACTTGTATTTGTAATTGTATTGAGAAATTCATTTTATAATTCGAGAAAAAGAAGAAAAAAGAGAACTGCATGTATTTTCTTTTATTTCAATTTTAACCAATTGAGCCACTAACAATTGTTTGATGTAATCCACAGAAACCTAC</genome_strand>
        <mrna_strand>GATAAATTGCCCTACCCCCAGCATCTTCTCTTTCCATCCGAACTTGAACAAG............................................................................................................................................AGCGATGTGTGGTGCGTGGGCATGCATCCAAGATTTTCCATCCTTTCTTTTCTCCTCGAGACTTCAAAGTGAACTCTGGGGAACTGAAAAGTAAGCTGATGGTGAATTTTGATCCAGTAAGGTGCTTTATTGCCGATATCGAG.....................................................................................................................................................AAAGGATTTCCCGATGTGGTCAAGGTTTGGTACGATGCTGTGGGTGGTGATGCTCTTGGTCTTACACTAGGAAAAGCAAGTTCACAG.........................................................................AAACGGAAGCATGATGACTCCGCGGAGGAGAGCACAGATCTTTTGAATACGCTAAAAACCATAGGCGAGGTTGGGAAAGGCCTTGTGAGAAGTATTCATGTTGTCAAGGCCCGAAAGGCGTGATAATTGAAATGTTCAAAAGAATGTACACTATGGGTATTGTTATCAAGGTTACCGGCCGGTAGGGAGCTCTTCAAATTTTGCAGCACAACTTTTGTACATGTGTAGTCTCTTGTCGAAGAGCCAACAATCACTTGTATTTGTAATTGTATTGAGAAATTCATTTTATAATTCGAGAAAAAGAAGAAAAAAGAGAACTGCAA................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264739" ref_strand="+" ref_description="SGN-E264739 [cLEG-71-A12]">
      <seq>aaaaactgcatttcttcttagaattgctgagagtctgcagaacaattgggggatgatgtttacagctacagaagatgatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggctcttggtctggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgacagaaaacttcttctgcaacaccaacatgcgagcaagatcaatgctttaaggggtcgttatcctatatatggaccaatagttcggctagctaaaagatgggtctctgcacatctattatccacggtgctgacagaggaggcagttgaactattggtttcaaatcttttcttgagacctttgccatttgaacctcctttctcccgaataacaggatttttgaggttcttacgattattatcggaatatgattgggccttttctcccttaatcgttgattttgatggtgacttttcaactgaggagaaaaataaaattaatgagaatttcatgagaagtagagaagagcatgaaaaggacacacagaaatcaagtcctgcaatgtttttagctactaaatatgacgttgcatctgaagcttggacaagatcctcaccaactacagcagagctaagacgactggtggctttttcaactagcagtgcgaatttgttgaccaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="68928" stop="63985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68628" g_stop="68596" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68511" g_stop="68387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="158" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68249" g_stop="68129" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="279" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68056" g_stop="67919" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="417" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66195" g_stop="66099" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="514" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65985" g_stop="65860" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="640" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65859" i_stop="64344" i_length="1516">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64343" g_stop="64285" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="699" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E264739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68628" e_stop="68596"/>
          <exon e_start="68511" e_stop="68387"/>
          <exon e_start="68249" e_stop="68129"/>
          <exon e_start="68056" e_stop="67919"/>
          <exon e_start="66195" e_stop="66099"/>
          <exon e_start="65985" e_stop="65860"/>
          <exon e_start="64343" e_stop="64285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTGCATTTCTTCTTAGAATTGCTGAGAGGTGGTCTTTCTTGAGTTTATTTTTTATGGAACAATACTTTGTGTAAGCCAACATTTAACTCATTTGAGTGCACCATTCTGGCAGTCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAAGTAAGACAGTTTGTGCCTGTATTCTTTACTCAAATAGAAAATTTCCCTATTGTTATGGAACTTTTTATCTAATATGTAAAAGACAGCCTGTAGTGACCTACTTCTGTGTATTGATTATGGATGATTTTTTTCCACAGGTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCGGTAAGGACATGAGTTCATACTCCATGCCCGTTTTCATCCTCCTTATAGCTCATTTACGTCTTTGCTTTGCAGGCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAGGTTTAATATCTGTCACTCAGCATTCAATTTTACTCAATTATATTACCGGTTACTTTCTCTTCCCCACTTCTTCACACTCAAATACTATTTGGTTAAAAGTTAACTATCAAGAACAAAAGAATTACAATTTGGTTGCTTGGAACACACATGTGCTCTTCCGAAAACCTAATAAGTTCCTGCAAAATTGTGGGCGACTGTCATGCGTGCATCAAATAGTGTTCACTTTCTGTTGTTGTTTCAAAATTATCTTTGCTCTTTCACATTTATGATGGACCTCTTTTTTATTTTCCCTTGTGTATGTTTGTATGTGTCACTTGCAACTTATACTTCTTTCACAACACAGTAGAATGTTGTGACCTTGAATGGAACAGCTAACTTTTTGTGCATTTGATGCTATCTGTTTGAGGGTAAGAATGTGGTGGGTCTTCAGGTAATGTAATTATGTGCATGATTTATAGGGAAGGAGGTGGAGGGCTAAAAAATGTGCATATGTGTAGAGCCATGGTTGGCTGTGGTGCTGATTGTTAGCAGATTTTCTTTTATGAAATAGGCAATGGCTCTTGGCAGTTAAATAGTAGTAGGCTCTAATTGCCACTAATATAGTAACTTCAATTGATCTTTAATTATGATTTTACATGGTCTTAGCATTAATATGTCCTAATCATATGATCAGTTGATGTATTTGGTCAAATTCCTGGTGTCATTGCAAGTTGTTTGAGCCCCATGGCATATTCGGTCGGCCAGCCGTGGCACTTATCTGGCTTATTATTGATGATTGTACTGTTTTGATCCCCATAATCATGGCCAATTGCTATTCATTTCTGTTTTATGTTGCCTATTGCCTCCTGTTCTTCACTATTACTTCTTTTATTACCAAGGTCACTTTCAAAGCTTCAAATATAACAGCTATGCCAATTCAAGTTTTACAGTAATGGTAGGAATACTATGAACCACTAACCCCCGAATTTTTTTCATTCCTAAAACTTCACTTCTTGCGATCTTTTTCATTTACAATCCCAAGTTTGATTGAAGAACACTGTGAGAGAATATTTATCATATTATTTATTGGGGTTGAGTGTGGTGCAAAAGCTACTTCTAAGTTCTAATTGCTTATGAATATATGACTCTACAATATGAGAAGCTTCAAGCCACTTCCGCTGTCCGTGAAACTTTAACTTGATGCAGACTGAGAAAGAATTGTTGAAGGTGCAGATCAGTTTTGTATTTAAAAGTTCCAATATGATATTGGGGCTTGAAGCTAATTATAAAAAGTAAAGGACTCAACTTAAATAAGAAGTTTGCTTGTACCTTTATAAATTTATCAGTTCTACATGACAGCTTGTGCATCTATATCAAAGAGCAGCAGATTCCTCAAAAGAACAGAAAATCTAGGGTGGAAGTGCAGTACTTCTCCCTGGTAGTTATACCCGTGTAGGCTAGAAGATCTACATAAGACAAAAGTTACTGACGTCTGTAATCACGTCAAAACATACTCGTGAGCAGTCAATTGATATAGTGTCCTGCAAACCAACGTTTGAGCTCTAATAGCTGTGTTCTTTTTTCATGCTTGTTTTTTCCCCTTTTAAATTCCCCCGTCCTTTTATGTTCTTTGTTGTTTTTGAGGTAAGAAATGGATGAAATCTGAAATGGTGCTTTCGGTTTCAAATTTAGTTATAAACTCTGTTAGTTGGTCACTTTTTCTTATATTCTGTATCTTAAACAGGTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAATGTAAGTACCAAGCCAAATGATCCATCTTTGGAGGGTGTTCCATGCTCTTATCTTGTTTTTCCATGTATATTTTTTTATAATTCAGAATACTATTTGCATATGAAATTTGACAGGAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCAGTAAGTGTTCCTCAATGATTGAACACTTGTATTAAATCTTCTCCTGTATTTTATGGAATCTTGTTCACCTAAGCATATTCTTATGCTTTTACAGAATTAAGGGGTTGTTTGGTAGAGAGTATAAAAATAATGCTCAATAGAGTGTATTAGTAATGCTAGCAATAGTTTTACTTGCATTGGTTATGCATAGATTATTTCTTATGCATTGTTTGGTTTGGTGTGTTAAAAGTGGTATGCATTGTATAAAAATCTATGTTTACAAGAGTATCCTTCACAATTATGATGGAAAAAATGTAAAAAGTGCTTTTTGAGGGGTAATTGAGTCATTATTAAATTTTTTGCATTGCTAATACCTAGAAATTCATGGTATTAGTAATACACTCCTCAATAGTCAATACACAATAGAGTGTGTAACTAATGCTTACATTAGTTATATATAGCATGAAAAAATGCTCAAACAAGGGCCTACTAATACACATTAGCTAATGCATGCATTATTTTTGCTATTACATTCTACCAAATGACCCCTAAGTGAAGAAACATAGTGTTTTGCTTCCTAATGTATATATATTGCACCCAAATAGTTAGCACATGTTTAGAAAACACTGTAGATTAGATGTCAACTTAAGACCATTGTCCCTAGAATGTATGACCAAGGTTTCATTTGTAGAAAAGTGGCCTCTGGAGAGGCTCATGTTAATCTTAGTTTCCATCTGCAGACTACTTTTTGCAGCTGCCTTACTACCATATACATACTCACAACAAAAGTAATTCTTAATTACTATATGCAAACCACATGCTTTGTCAATATTGTTTGTGGTTGAATCATTTAGGAGAAAGGAGAAGTATTTCATATGATGGTAACCATGATCTGTCCTGTACATATTTGGACCAGTGATGTTACAACTTCACACTTTGGCTAAACATGTGCATAGGATGCTTATCAAACATATATACAACACAAAATTACACCAGATCCACGTTTCCACTTCTTGTGCATCCTTTTCTCTTTTATATTCCTAGATTAAGAAAAGTAGCTAGAAGTAATTCTCTTAAGAATTTTTTTTTTTTATGGTAAACCTGTTGTCAAACCCACCAAGGAGCTCCATATTGATCCTATTCCTCCTTATCTCTCTTGTTGGCTCGATTCCTCAACCTTATGGTTGGAGGTGGAGGGTTCTTACCATTAGGTTATCCCTCGCATCTCAAAGTCTTCATAAAGTCAATCGGGGAAGTTTAGCTTGGGACATGACTACCGAAAAGGATAAATATTGTTGTCTTATGGATAATGAGATATCACAATATGAAGAAATCAAACAATAAGATAAAGCATTTAAACCTTCTATGGAACCAGGGCCTGTAGTGTAACACAATCTGTGCATGTATACTAGTTTTTAGGAAATATTGTCGTTCATGGTCTTGAGAACAAACTCCTCTCATGATTGTTTTGTTGATAAGTTTTCACGATTGTCATGGCTTTTTTTCTGGCATTAATGTGGGTACCGATGTGTACTAGGAGCTAAGACGACTGGTGGCTTATTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</genome_strand>
        <mrna_strand>AAAAACTGCATTTCTTCTTAGAATTGCTGAGAG....................................................................................TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA.........................................................................................................................................GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG........................................................................GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT.................................................................................................................GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGACGACTGGTGGCTTTTTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551235" ref_strand="+" ref_description="SGN-E551235 [TUS-55-O3]">
      <seq>ttcttcttagagttgctgaaagtctgcagaacaattgggggatgatgtttacagctacagaagatgatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggctcttggtctggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgacagaaaacttcttctgcaacaccaacatgcgagcaagatcaatgctttaaggggtcgttatcctatatatggaccaatagttcggctagctaaaagatgggtctctgcacatctattatccacggtgctgacagaggaggcagttgaactattggtttcaaatcttttcttgagacctttgccatttgaacctcctttctcccgaataacaggatttttgaggttcttacgattattatcggaatatgattgggccttttctcccttaatcgttgattttgatggtgacttttcaactgaggagaaaaataaaattaatgagaatttcatgagaagtagagaagagcatgaaaaggacacacagaaatcaagtcctgccatgtttttagctactaaatatgacgttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="68820" stop="65594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68617" g_stop="68596" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68511" g_stop="68387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="147" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68249" g_stop="68129" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="268" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68056" g_stop="67919" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="406" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66195" g_stop="66099" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="503" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65985" g_stop="65894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="595" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E551235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68617" e_stop="68596"/>
          <exon e_start="68511" e_stop="68387"/>
          <exon e_start="68249" e_stop="68129"/>
          <exon e_start="68056" e_stop="67919"/>
          <exon e_start="66195" e_stop="66099"/>
          <exon e_start="65985" e_stop="65894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAGAATTGCTGAGAGGTGGTCTTTCTTGAGTTTATTTTTTATGGAACAATACTTTGTGTAAGCCAACATTTAACTCATTTGAGTGCACCATTCTGGCAGTCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAAGTAAGACAGTTTGTGCCTGTATTCTTTACTCAAATAGAAAATTTCCCTATTGTTATGGAACTTTTTATCTAATATGTAAAAGACAGCCTGTAGTGACCTACTTCTGTGTATTGATTATGGATGATTTTTTTCCACAGGTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCGGTAAGGACATGAGTTCATACTCCATGCCCGTTTTCATCCTCCTTATAGCTCATTTACGTCTTTGCTTTGCAGGCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAGGTTTAATATCTGTCACTCAGCATTCAATTTTACTCAATTATATTACCGGTTACTTTCTCTTCCCCACTTCTTCACACTCAAATACTATTTGGTTAAAAGTTAACTATCAAGAACAAAAGAATTACAATTTGGTTGCTTGGAACACACATGTGCTCTTCCGAAAACCTAATAAGTTCCTGCAAAATTGTGGGCGACTGTCATGCGTGCATCAAATAGTGTTCACTTTCTGTTGTTGTTTCAAAATTATCTTTGCTCTTTCACATTTATGATGGACCTCTTTTTTATTTTCCCTTGTGTATGTTTGTATGTGTCACTTGCAACTTATACTTCTTTCACAACACAGTAGAATGTTGTGACCTTGAATGGAACAGCTAACTTTTTGTGCATTTGATGCTATCTGTTTGAGGGTAAGAATGTGGTGGGTCTTCAGGTAATGTAATTATGTGCATGATTTATAGGGAAGGAGGTGGAGGGCTAAAAAATGTGCATATGTGTAGAGCCATGGTTGGCTGTGGTGCTGATTGTTAGCAGATTTTCTTTTATGAAATAGGCAATGGCTCTTGGCAGTTAAATAGTAGTAGGCTCTAATTGCCACTAATATAGTAACTTCAATTGATCTTTAATTATGATTTTACATGGTCTTAGCATTAATATGTCCTAATCATATGATCAGTTGATGTATTTGGTCAAATTCCTGGTGTCATTGCAAGTTGTTTGAGCCCCATGGCATATTCGGTCGGCCAGCCGTGGCACTTATCTGGCTTATTATTGATGATTGTACTGTTTTGATCCCCATAATCATGGCCAATTGCTATTCATTTCTGTTTTATGTTGCCTATTGCCTCCTGTTCTTCACTATTACTTCTTTTATTACCAAGGTCACTTTCAAAGCTTCAAATATAACAGCTATGCCAATTCAAGTTTTACAGTAATGGTAGGAATACTATGAACCACTAACCCCCGAATTTTTTTCATTCCTAAAACTTCACTTCTTGCGATCTTTTTCATTTACAATCCCAAGTTTGATTGAAGAACACTGTGAGAGAATATTTATCATATTATTTATTGGGGTTGAGTGTGGTGCAAAAGCTACTTCTAAGTTCTAATTGCTTATGAATATATGACTCTACAATATGAGAAGCTTCAAGCCACTTCCGCTGTCCGTGAAACTTTAACTTGATGCAGACTGAGAAAGAATTGTTGAAGGTGCAGATCAGTTTTGTATTTAAAAGTTCCAATATGATATTGGGGCTTGAAGCTAATTATAAAAAGTAAAGGACTCAACTTAAATAAGAAGTTTGCTTGTACCTTTATAAATTTATCAGTTCTACATGACAGCTTGTGCATCTATATCAAAGAGCAGCAGATTCCTCAAAAGAACAGAAAATCTAGGGTGGAAGTGCAGTACTTCTCCCTGGTAGTTATACCCGTGTAGGCTAGAAGATCTACATAAGACAAAAGTTACTGACGTCTGTAATCACGTCAAAACATACTCGTGAGCAGTCAATTGATATAGTGTCCTGCAAACCAACGTTTGAGCTCTAATAGCTGTGTTCTTTTTTCATGCTTGTTTTTTCCCCTTTTAAATTCCCCCGTCCTTTTATGTTCTTTGTTGTTTTTGAGGTAAGAAATGGATGAAATCTGAAATGGTGCTTTCGGTTTCAAATTTAGTTATAAACTCTGTTAGTTGGTCACTTTTTCTTATATTCTGTATCTTAAACAGGTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAATGTAAGTACCAAGCCAAATGATCCATCTTTGGAGGGTGTTCCATGCTCTTATCTTGTTTTTCCATGTATATTTTTTTATAATTCAGAATACTATTTGCATATGAAATTTGACAGGAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATC</genome_strand>
        <mrna_strand>TTCTTCTTAGAGTTGCTGAAAG....................................................................................TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA.........................................................................................................................................GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG........................................................................GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT.................................................................................................................GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCCATGTTTTTAGCTACTAAATATGACGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689054" ref_strand="+" ref_description="SGN-E689054 [t3_tus_55_O03]">
      <seq>ttcttcttagagttgctgaaagtctgcagaacaattgggggatgatgtttacagctacagaagatgatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggctcttggtctggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgacagaaaacttcttctgcaacaccaacatgcgagcaagatcaatgctttaaggggtcgttatcctatatatggaccaatagttcggctagctaaaagatgggtctctgcacatctattatccacggtgctgacagaggaggcagttgaactattggtttcaaatcttttcttgagacctttgccatttgaacctcctttctcccgaataacaggatttttgaggttcttacgattattatcggaatatgattgggccttttctcccttaatcgttgattttgatggtgacttttcaactgaggagaaaaataaaattaatgagaatttcatgagaagtagagaagagcatgaaaaggacacacagaaatcaagtcctgccatgtttttagctactaaatatgacgttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="68820" stop="65594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68617" g_stop="68596" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68511" g_stop="68387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="147" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68249" g_stop="68129" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="268" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68056" g_stop="67919" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="406" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66195" g_stop="66099" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="503" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65985" g_stop="65894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="595" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E689054" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68617" e_stop="68596"/>
          <exon e_start="68511" e_stop="68387"/>
          <exon e_start="68249" e_stop="68129"/>
          <exon e_start="68056" e_stop="67919"/>
          <exon e_start="66195" e_stop="66099"/>
          <exon e_start="65985" e_stop="65894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAGAATTGCTGAGAGGTGGTCTTTCTTGAGTTTATTTTTTATGGAACAATACTTTGTGTAAGCCAACATTTAACTCATTTGAGTGCACCATTCTGGCAGTCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAAGTAAGACAGTTTGTGCCTGTATTCTTTACTCAAATAGAAAATTTCCCTATTGTTATGGAACTTTTTATCTAATATGTAAAAGACAGCCTGTAGTGACCTACTTCTGTGTATTGATTATGGATGATTTTTTTCCACAGGTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCGGTAAGGACATGAGTTCATACTCCATGCCCGTTTTCATCCTCCTTATAGCTCATTTACGTCTTTGCTTTGCAGGCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAGGTTTAATATCTGTCACTCAGCATTCAATTTTACTCAATTATATTACCGGTTACTTTCTCTTCCCCACTTCTTCACACTCAAATACTATTTGGTTAAAAGTTAACTATCAAGAACAAAAGAATTACAATTTGGTTGCTTGGAACACACATGTGCTCTTCCGAAAACCTAATAAGTTCCTGCAAAATTGTGGGCGACTGTCATGCGTGCATCAAATAGTGTTCACTTTCTGTTGTTGTTTCAAAATTATCTTTGCTCTTTCACATTTATGATGGACCTCTTTTTTATTTTCCCTTGTGTATGTTTGTATGTGTCACTTGCAACTTATACTTCTTTCACAACACAGTAGAATGTTGTGACCTTGAATGGAACAGCTAACTTTTTGTGCATTTGATGCTATCTGTTTGAGGGTAAGAATGTGGTGGGTCTTCAGGTAATGTAATTATGTGCATGATTTATAGGGAAGGAGGTGGAGGGCTAAAAAATGTGCATATGTGTAGAGCCATGGTTGGCTGTGGTGCTGATTGTTAGCAGATTTTCTTTTATGAAATAGGCAATGGCTCTTGGCAGTTAAATAGTAGTAGGCTCTAATTGCCACTAATATAGTAACTTCAATTGATCTTTAATTATGATTTTACATGGTCTTAGCATTAATATGTCCTAATCATATGATCAGTTGATGTATTTGGTCAAATTCCTGGTGTCATTGCAAGTTGTTTGAGCCCCATGGCATATTCGGTCGGCCAGCCGTGGCACTTATCTGGCTTATTATTGATGATTGTACTGTTTTGATCCCCATAATCATGGCCAATTGCTATTCATTTCTGTTTTATGTTGCCTATTGCCTCCTGTTCTTCACTATTACTTCTTTTATTACCAAGGTCACTTTCAAAGCTTCAAATATAACAGCTATGCCAATTCAAGTTTTACAGTAATGGTAGGAATACTATGAACCACTAACCCCCGAATTTTTTTCATTCCTAAAACTTCACTTCTTGCGATCTTTTTCATTTACAATCCCAAGTTTGATTGAAGAACACTGTGAGAGAATATTTATCATATTATTTATTGGGGTTGAGTGTGGTGCAAAAGCTACTTCTAAGTTCTAATTGCTTATGAATATATGACTCTACAATATGAGAAGCTTCAAGCCACTTCCGCTGTCCGTGAAACTTTAACTTGATGCAGACTGAGAAAGAATTGTTGAAGGTGCAGATCAGTTTTGTATTTAAAAGTTCCAATATGATATTGGGGCTTGAAGCTAATTATAAAAAGTAAAGGACTCAACTTAAATAAGAAGTTTGCTTGTACCTTTATAAATTTATCAGTTCTACATGACAGCTTGTGCATCTATATCAAAGAGCAGCAGATTCCTCAAAAGAACAGAAAATCTAGGGTGGAAGTGCAGTACTTCTCCCTGGTAGTTATACCCGTGTAGGCTAGAAGATCTACATAAGACAAAAGTTACTGACGTCTGTAATCACGTCAAAACATACTCGTGAGCAGTCAATTGATATAGTGTCCTGCAAACCAACGTTTGAGCTCTAATAGCTGTGTTCTTTTTTCATGCTTGTTTTTTCCCCTTTTAAATTCCCCCGTCCTTTTATGTTCTTTGTTGTTTTTGAGGTAAGAAATGGATGAAATCTGAAATGGTGCTTTCGGTTTCAAATTTAGTTATAAACTCTGTTAGTTGGTCACTTTTTCTTATATTCTGTATCTTAAACAGGTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAATGTAAGTACCAAGCCAAATGATCCATCTTTGGAGGGTGTTCCATGCTCTTATCTTGTTTTTCCATGTATATTTTTTTATAATTCAGAATACTATTTGCATATGAAATTTGACAGGAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATC</genome_strand>
        <mrna_strand>TTCTTCTTAGAGTTGCTGAAAG....................................................................................TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA.........................................................................................................................................GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG........................................................................GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT.................................................................................................................GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCCATGTTTTTAGCTACTAAATATGACGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477881" ref_strand="+" ref_description="SGN-E477881 [cSTD-2-G15]">
      <seq>ggcatctttccatacccaaagaaaaagtcgttcctattgtggatcaacttgatttttgtctcctccacagggatgtagatcctatatctttctcaaaaagtttgctggtagcacttgaagagctgtcaaagcgtttgcttcagctgaatgacattccactaaaggtgtcgactgtgcaagctctagactcagctgctaggttgacatctgtctttccgcccatgcctcatcctctggcacatgagaagagtgttggcataaaactaaggaagcccgtttcaacctgtataaatccagttgaagttatgattcagcttgaagggtctggaagttggccaatggatgaaattgcaatagagaagacaaaaactgcatttcttcttagaattgctgagagtctgcagaacaattgggggatgatgtttacagctacagaagatgatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggctcttggtttggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgacagaaaacttcttctgcaacaccaacatgcgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="69562" stop="67878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69262" g_stop="69185" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69184" i_stop="69099" i_length="86">
            <donor d_prob="0.821" d_score="0.96"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69098" g_stop="68985" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="192" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68984" i_stop="68891" i_length="94">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68890" g_stop="68769" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="314" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68768" i_stop="68679" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.844" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68678" g_stop="68596" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="397" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68511" g_stop="68387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="522" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68249" g_stop="68178" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="594" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E477881" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69262" e_stop="69185"/>
          <exon e_start="69098" e_stop="68985"/>
          <exon e_start="68890" e_stop="68769"/>
          <exon e_start="68678" e_stop="68596"/>
          <exon e_start="68511" e_stop="68387"/>
          <exon e_start="68249" e_stop="68178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCTTTCCATTCCCAAACAAAAAGTTGTTCCTATTGTGGATCAACTTGATTTTTGTCTTCTCCACAGGGATGTAGGTACGGTCATTATTGCTAGTTACTTTCAGTCTTTGCCTTCTCAAGCTTGAAGAATGTTCCTTGTGAATAATGAATTTTATTTTTAGATCCTATATCTTTCTCAAAAAGTTTGCTGGTGGCACTTGAAGAGCTGTCAAAGCGTTTGCTTCAGCTGAATGACATTCCACTAAAGGTGTCGACTGTGCAAGCTCTAGACTCAGGTTTCCTTTTCTCTACTCTTAAGAGTTCTTTCATACATATATATTCGATACTCCTATTACTGCAAAAGTGGTTCGTGCTTACAGTTAGTCACAGCTGCTAGGTTGACATCTGTCTTTCCGCCCATGCCTCATCCTCTGGCACATGAGAAGAGTGTTGCCACAAAACTAAGGAAGCCTATTTCAACCTGTATAAATCCAGTTGAAGTTATGATTCAGGCATGAACAGCTATCCTTGAATAATTTTGTTGTATAGTCTGCACTGAATCCCCAAGAATCTTAAGGATTTACCTCCCCCTTTTATAATAGCTTGAAGGATCTGGAAGTTGGCCGATGGATGAAATTGCAATAGAGAAGACAAAAACTGCATTTCTTCTTAGAATTGCTGAGAGGTGGTCTTTCTTGAGTTTATTTTTTATGGAACAATACTTTGTGTAAGCCAACATTTAACTCATTTGAGTGCACCATTCTGGCAGTCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAAGTAAGACAGTTTGTGCCTGTATTCTTTACTCAAATAGAAAATTTCCCTATTGTTATGGAACTTTTTATCTAATATGTAAAAGACAGCCTGTAGTGACCTACTTCTGTGTATTGATTATGGATGATTTTTTTCCACAGGTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCA</genome_strand>
        <mrna_strand>GGCATCTTTCCATACCCAAAGAAAAAGTCGTTCCTATTGTGGATCAACTTGATTTTTGTCTCCTCCACAGGGATGTAG......................................................................................ATCCTATATCTTTCTCAAAAAGTTTGCTGGTAGCACTTGAAGAGCTGTCAAAGCGTTTGCTTCAGCTGAATGACATTCCACTAAAGGTGTCGACTGTGCAAGCTCTAGACTCAG..............................................................................................CTGCTAGGTTGACATCTGTCTTTCCGCCCATGCCTCATCCTCTGGCACATGAGAAGAGTGTTGGCATAAAACTAAGGAAGCCCGTTTCAACCTGTATAAATCCAGTTGAAGTTATGATTCAG..........................................................................................CTTGAAGGGTCTGGAAGTTGGCCAATGGATGAAATTGCAATAGAGAAGACAAAAACTGCATTTCTTCTTAGAATTGCTGAGAG....................................................................................TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTTTGGTGACTGGGCAAA.........................................................................................................................................GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541580" ref_strand="+" ref_description="SGN-E541580 [TUS-62-H3]">
      <seq>acaaaagagtagctttgccagttcttctattgtgagatttacaggaagaatgataaaggcggtaatggtgattaacaccttcggcaagcctcgcctttcgaaattgtacgaatttcaaccagtggagaagcaacaagagctcatccgccatgtctacacagtcttaagcaacaggactgacaatgtgagcaattttattcggagcttaagggcaattttcggtccggatacaaggctcgtgtataagcactatgctacctgtatatttcgtgtttctatgtgataactctgagaatgaattggccatgctcgacttaatacaagtttttgtagaaactctggacaaatgcttcaggaagtgtatgcgagcttgatgtagtattcaattataccaggatgcatatcattctagatgaaataattttaggagggcaagtgctagaaacagattctgttgaagtcgagaaagcactggaagagatctcagaattagagtcgaccactagtgctggcacattgatcaacaagatctattccgtcttggtgggctagataacacatggctcctctgtacattaccatatcttagtgttgaagatgaactatagggaatatgacatgtatactttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76451" stop="79311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76751" g_stop="76868" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.443" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="161" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="226" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="324" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.848" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="396" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="488" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="79011" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="633" r_length="145" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E541580" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76751" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="79011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGAGTAGCTTTGCCAGTTCTTCTATTGTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCT-TATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCA-GAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAA-ATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCA</genome_strand>
        <mrna_strand>ACAAAAGAGTAGCTTTGCCAGTTCTTCTATTGTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTGTACGAATTTCAA.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAG.................................................................................TCTTAAGCAACAGGACTGACAATGTGAGCAATTTTATTCGGAGCTTAAGGGCAATTTTCGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTGTATATTTCGTGTTTCTATGTGATAACTCTGAGAATGAATTGGCCATGCTCGACTTAATACAAG......................................................................................................................................................................TTTTTGTAGAAACTCTGGACAAATGCTTCAGGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATACCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAGGAGGGCAAGTGCTAGAAACAGATTCTGTTGAAGTCGAGAAAGCACTGGAAGAGATCTCAGA.........................................................................................................ATTAGAGTCGACCACTAGTGCTGGCACATTGATCAACAAGATCTATTCCGTCTTGGTGGGCTAGATAACACATGGCTCCTCTGTACATTACCATATCTTAGTGTTGAAGATGAACTATAGGGAATATGACATGTATACTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298466" ref_strand="+" ref_description="SGN-E298466 [cLET-41-K7]">
      <seq>caaaagagtagctttgccagttcttctattgtgagatttacaggaagaatgataaaggcggtaatggtgattaacaccttcggcaagcctcgcctttcgaaattttacgaatttcagccagtggagaagcaacaagagctcatccgccatgtctacacagtcttaagcaacaggcctgacaatgtgagcaattttattcggagcttaggggcaattttcggtccggatacaaggctcgtgtataagcactatgctaccttatatttcgtgtttctatttgataactctgagaatgagttggccatgctcgacttaatacaagtttttgtagaaactctggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattatagcaagatgcatatcattctagatgaaataattttaggtggtcaagtgctagaaacagattctgttgaagtcgtgaaagcagtggaagagatctcaaaattagagtcaaccactagtgctggcacattgatcaacaaatctattccgtcttggtgggctagataacacatggttcctctgtacattaccatatcttagtgttgaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76452" stop="79279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76752" g_stop="76868" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="160" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="322" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="393" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="485" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="78979" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="597" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E298466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76752" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="78979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAGTAGCTTTGCCAGTTCTTCTATTGTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGA</genome_strand>
        <mrna_strand>CAAAAGAGTAGCTTTGCCAGTTCTTCTATTGTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAG.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAG......................................................................................................................................................................TTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAA.........................................................................................................ATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620441" ref_strand="+" ref_description="SGN-E620441 [71142]">
      <seq>gtgagatttacaggaagaatgataaaggcggtaatggtgattaacaccttcggcaagcctcgcctttcgaaattttacgaattccagccagtggagaagcaacaagagctcatccgccatgtctacgcagtcttaagcaacaggcctgacaatgtgagcaattttattcggagcttaggggcaatttttggtccggatacaaggctcgtgtataagcactatgctaccttatatttcgtgtttttatttgataactctgagaatgagttggccatgctcgacttaatacaagcagtttttgtagaaacactggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattatagcaagatgcatatcattctagatgaaataattttaggtggtcaagtgctagaaacagattctgttgaagtcgtgagagcagttgaagagatctcaaaattagagtcaaccacaagtgctggcacattaatcaacaaatctattccgtcttggtggcgtagattaccccatggttcctctgtacattaccatatcttagtgttgaaaatgaactatagtgaatatgacatgtatactttttcagtgtggcatgttaactgacttctcgatttgtaatcatagctggatgccccttctcagagttatcggattttctttatagggtccttcaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76482" stop="79400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76782" g_stop="76868" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.443" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="130" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="195" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="292" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78012" i_length="163">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78013" g_stop="78086" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="366" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="458" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="79109" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="700" r_length="242" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E620441" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76782" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78013" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="79109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGA-TAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTATCAGATTTTCTTTATAGGGTCCTTCACCGCTAGTT</genome_strand>
        <mrna_strand>GTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTCCAG.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACGCAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTTGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTTTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAG...................................................................................................................................................................CAGTTTTTGTAGAAACACTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAGAGCAGTTGAAGAGATCTCAAA.........................................................................................................ATTAGAGTCAACCACAAGTGCTGGCACATTAATCAACAAATCTATTCCGTCTTGGTGGCGTAGATTACCCCATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGTGAATATGACATGTATACTTTTTCAGTGTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATGC-CCCTTCTCAGAGTTATCGGATTTTCTTTATAGGGTCCTTCAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422022" ref_strand="+" ref_description="SGN-E422022 [STM-33-P14]">
      <seq>gaatgataaaggcggtaatggtgattaacaccttcggcaagccccgcctttcgaaattttacgaatttcagccagtggagaagcaacaagagctcatccgccatgtctacgcagtcttaagcaacaggcctgacaatgtgagcaattttattcggagcttaggggaaatttttggtccggatacaaggctcgtgtataagcactatgctaccttatattttgtctttctatttgataactctgagaatgagttggccatgcttgacttaatacaagtttttgtagaaacactggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattatagcaagatgcatatcattctagatgaaataattttaagtggtcaagtgctagaaacagattctgttgaagttgtgagagcagttgaagagatttcaaaattggagtcaaccacaagtgctggcacattgatcaacaaatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76498" stop="79213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76798" g_stop="76868" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.443" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="114" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="179" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="276" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="347" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="439" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="78913" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="485" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E422022" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76798" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="78913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATT</genome_strand>
        <mrna_strand>GAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCCCGCCTTTCGAAATTTTACGAATTTCAG.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACGCAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGAAATTTTTGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTTGTCTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTTGACTTAATACAAG......................................................................................................................................................................TTTTTGTAGAAACACTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAAGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTTGTGAGAGCAGTTGAAGAGATTTCAAA.........................................................................................................ATTGGAGTCAACCACAAGTGCTGGCACATTGATCAACAAATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407437" ref_strand="+" ref_description="SGN-E407437 [PPI-7-G10]">
      <seq>gaatgataaaggcggtaatggtgattaacaccttcggcaagccccgcctttcgaaattttacgaatttcagccagtggagaagcaacaagagctcatccggcatgtctacgcagtcttaagcaacaggcctgacaatgtgagcaattttattcggagcttaggggaaatttttggtccggatacaaggctcgtgtataagcactatgctaccttatattttgtctttctatttgataactctgagaatgagttggccatgcttgacttaatacaagttgttgtagaaacactggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattgtagcaagatgcatatagttctagatgaaataattttagggggtcaagtgctagaaacagattctgttgaagttgtgagagcagttcaggagatttcaaaattggagtcaaccacaggtgctggcacattgatcaacaaatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76498" stop="79212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76798" g_stop="76868" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.443" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="114" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="179" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="276" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="347" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="439" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="78912" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="484" r_length="45" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E407437" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76798" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="78912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTAT</genome_strand>
        <mrna_strand>GAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCCCGCCTTTCGAAATTTTACGAATTTCAG.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGGCATGTCTACGCAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGAAATTTTTGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTTGTCTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTTGACTTAATACAAG......................................................................................................................................................................TTGTTGTAGAAACACTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTGTAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATAGTTCTAGATGAAATAATTTTAGGGGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTTGTGAGAGCAGTTCAGGAGATTTCAAA.........................................................................................................ATTGGAGTCAACCACAGGTGCTGGCACATTGATCAACAAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553836" ref_strand="+" ref_description="SGN-E553836 [cTSC-2-G12]">
      <seq>gtggatcccccgggctgcaggtgataaaggcggtaatggtgattaacaccttcggcaagcctcgcctttcgaaattttacgaatttcagccagtggagaagcaacaagagctcatccgccatgtctacacagtcttaagcaacaggcctgacaatgtgagcaattttattcggagcttaggggcaattttcggtccggatacaaggctcgtgtataagcactatgctaccttatatttcgtgtttctatttgataactctgagaatgagttggccatgctcgacttaatacaagtttttgtagaaactctggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattatagcaagatgcatatcattctagatgaaataattttaggtggtcaagtgctagaaacagattctgttgaagtcgtgaaagcagtggaagagatctcaaaattagagtcaaccactagtgctggcacattgatcaacaaatctattccgtcttggtgggctagataacacatggttcctctgtacattaccatatcttagtgttgaaaatgaactatagggaatatgacatgtatactttttcagtttggcatgttaactgacttctcgatttgtaatcatagctggatacacccttctctgagttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76501" stop="79374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76801" g_stop="76868" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="89" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76972" g_stop="77014" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="132" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="197" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="294" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="365" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="457" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78868" g_stop="79077" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="667" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E553836" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76801" e_stop="76868"/>
          <exon e_start="76972" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="79077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAGGTTTGTGGCTCATAATTATCTTTTTTTTTTCTATTCCTAAGATCTATCTTTGATTCGATCCTGTTCAATTTTCGCTGAAATTTGTTATTGGGATTGGAATTAGCCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTATCA</genome_strand>
        <mrna_strand>TGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAG.......................................................................................................CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAG......................................................................................................................................................................TTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAA.........................................................................................................ATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407456" ref_strand="+" ref_description="SGN-E407456 [PPI-7-K10]">
      <seq>tccgccatgtctacgcagtcttaagcaacaggcctgacaatgtgagcaattttcttcggagccttagggaaatttttggtccggatacaaggctcgtgtataagcactatgctaccttatattttgtctttctatttgataactctgagaatgagttggccatgcttgacttaatacaagtttttgtagaaacactggacaaatgcttcagaagtgtatgcgagcttgatgtagtattcaattatagcaagatgcatatcattctagatgaaataattttaggtggtcaagtgctagaaacagattctgttgaagttgtgagagcagttgaagagatttcaaaattggagtcaaccacaagtgctggcacattgatcaacaaatctattccgtcttggtgggctagataacacatggttcctctgtaccattaccatatcttagtgttgaaaatgtactatagagaatatgacatatatacttttttaagtgtggcatgttaactgacttctcgatttgtaatcatagctggatacacccttctctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="+" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="76793" stop="79370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76997" g_stop="77014" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77096" g_stop="77160" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="83" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77753" g_stop="77849" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="180" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78016" g_stop="78086" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="251" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78671" g_stop="78762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="343" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78868" g_stop="79078" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="556" r_length="213" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="+" ref_id="SGN-E407456" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76997" e_stop="77014"/>
          <exon e_start="77096" e_stop="77160"/>
          <exon e_start="77753" e_stop="77849"/>
          <exon e_start="78016" e_stop="78086"/>
          <exon e_start="78671" e_stop="78762"/>
          <exon e_start="78868" e_stop="79078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCATGTCTACACAGGTAAACACACAATTTGATTAAACTGAGATTTCGTTCAGTTGAATGAGTTTTTGTTTCTTCGTTTTGGATTTCATTTTTCAGTCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCGGTAATTACTTGATTGTCTGGAAATTTTCAATTAGTAATTCTTCCCACATTTACTATTCGGATTATGAAAGTATCCTTCTGCAACTTTATCTAATGCTGGTGCAGGCATTTGCTATATGAGAAAATTATGTATGGATTGTACGTAACTCTATGATCTTAAACTTAAGGATTTCCACGATATATATAACAAGGACACTTTATCTAAATAGAATCGTTGATGCTGTGCAAATTCGCAGAAATACAGACATAAAACTTTCGAAATTTTGATTTCTATACCATCACCTTTGGTTTATTGTTGTATGTTAGTTATCCTCTTCCATCGAGTGAGTAAATACATACATGTAGAGAACTTACTCCATCTGAATTGTAAAATTTTAGCTAATTAATGTTGACTAAAACCAGATAAAAAATGATGTACCAAAATAGGACAAGTGGAGCCCTGTAGATACTATCATTTAGGCAACAATTTACATGCTACTGTTTTTTTAATGGTTGTGTACTACTCATTGTGATGTACAAATTAAGAAGAGTAATTTATACTCTCAACTATAAAGAGTAAATTTTAATGATAGCCATTACTATATCTTTTCCAGGATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAGGTACTTGTTTCCACTATTTACATAGTTTTATTGTGGGAAAACACATTTTTTAATTTCATGTTTAAGTTAACTATGCTTAGTTTTATTGTGGGAAGACACATTTTTTAATTTCATGTTTAAGTTAGGTAACTTTGCTTAAGTGATGATGTTGTTTTCTTTATAGCAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAGGTAAGAGTATTGCACTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTATGTAGAAACCAATGAGCTTGATGTAGTATTCAGTTATAGCAAGGTAAGAGTATTGCATTAACCTATTTGTTGTATTTTATATACTTATCTTTGAAACATGAATATCCGTGTATAGAAACCAATTTGGATACATAGGTGGAATATATCATTAATAAGTCTCAGAAATCAACTTCTGTTGCTAATTAGTTGCAGAACTTTCATGCTCCCTCAATGACAAACTCTGATCATTACAATGCATAAGATGTTTAGATGGACTACTATTTTCCAGACAATTCCACTTTTCCCAATATTCTCCACCATTGGGACTTTTAAGTGTTATAACTTCTAATTCACATATGGTCACTTCCATAACATAATTAATTAATGCTTCTAAAGCTCTAGTAGTAAAAGCTTGGGCTCGTTCACAATTTTACATCAAGCTTCATCCTATGCAATGCATTACAAGTGCTATTTCTCTTGCCTTTTGGGGTATCAATCAGCATATTTGTTGTGTCTAATGGATGCTTGTCTTATGCAGATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAAGTTTGTCTCTATCTCTCTCACTTGCATTTGTCATGATTTTTTTTTTCGAGCTTTATGTGCAAAACTTGTAAATTGTTTTAAAGAATAATTCATATCTAATTGCAGATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTA-CATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATAC-TTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTATCAG</genome_strand>
        <mrna_strand>TCCGCCATGTCTACGCAG.................................................................................TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTCTTCGGAGCCTTAGGGAAATTTTTGGTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTTGTCTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTTGACTTAATACAAG......................................................................................................................................................................TTTTTGTAGAAACACTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTTGTGAGAGCAGTTGAAGAGATTTCAAA.........................................................................................................ATTGGAGTCAACCACAAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACCATTACCATATCTTAGTGTTGAAAATGTACTATAGAGAATATGACATATATACTTTTTTAAGTGTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717110" ref_strand="+" ref_description="SGN-E717110 [FB18DG12]">
      <seq>ggaatcattcgctcagagatgctttagcatgatagatgaatatgctcctggatttagctcatcaattatcgggtatgatatgttgactcctccagacctcgaaagagaaattggtttgacaggaggcaatatattccacggatccatgggattagattctctgtttttaatgcggccagtgaaaggatggtcaaattatcggactccaattgaaggcctatacttgtgtggcagcgggacacatcccggtggtggagtaatgggcgccccaggacgcaatgctgcgcatgttgtcattgaggacttcaagaaatcatgaagcttctcttgtgtgattcttttgacgagttcaatcagttaaaataatgacatctagtctaaaacactctggtgttatagccaaatattgcgaattagttgcttaagagtctatttgaagtctattaaatattgaagtcagtttgactgatcacaagcgcaaatctcttcgattgaagaatcttcagaatgagtgaatcccctcaatgtaaagaataatgtcatgctgggaacgggaaaataagttaaggcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="81571" stop="79798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81271" g_stop="81150" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80633" g_stop="80567" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="189" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80481" g_stop="80103" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="568" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="585"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E717110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81271" e_stop="81150"/>
          <exon e_start="80633" e_stop="80567"/>
          <exon e_start="80481" e_stop="80103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAGGTGCGCCACTGCTATCCTCTTGATCAGTTGTACCTTTTCTACTCCTCCCTGGAGAAAGAACCATTGCTGTATGGAATGTCCTTCATTAGTTTTCTTTTTTTGGTTGATAAATTAAAGGATAGGGACCCGAACACTTCATTGTTGTCCTTAAGTTGCCACAACATTGGCGAAGTTTATTGTAGTTCAACAACTGTACCATATAGTTTATGCACCACACAGAATTTAAATCATGTTCATAGCTTAATCTTCCTGTAAACTAACGTTTTATGATCAACTTACCTGACTTGTTTCTTGTTGAAGCATCAGTGTTTCACCCACAGTAGGTTATAAGTATCAGCATACTACAATCCTGGAAGATAAAACGAAACCTGATGTTTGGTTTATCTGAGCCCAGTCTAAGAAATTTGTGGATTGTTTTAGTTATGAGAACGAACGACTATCAGCTGGAGCATGCTTCATATAGTCCCTGGCAAAATGATATAGCAAATACTGATGTGTTGTATTATATGTTGACAGGAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGATCACAAGCGCAAATCTCTTCGATTGAAGAATCTTCAGAATGAGTGAATCCCCTCAATGTAAAGAATAATGTCATGCTGGGAACGGGAAAATAAGTTAAG</genome_strand>
        <mrna_strand>GGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG.....................................................................................GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGATCACAAGCGCAAATCTCTTCGATTGAAGAATCTTCAGAATGAGTGAATCCCCTCAATGTAAAGAATAATGTCATGCTGGGAACGGGAAAATAAGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369323" ref_strand="+" ref_description="SGN-E369323 [TUS-25-E14](-)">
      <seq>caggatgctgaaaatggcttaccatctcaacggcccataattgagatgacaattcccactgtctttgacaagacaatatctccatctggaaagcatgtgattggtttattcatccagtacacaccttataaaccctctgatggcagctgggaaaatcctgtatatagagaatcattcgctcagagatgctttagcatgatagatgaatatgctcctggatttagctcatcaattatcgggtatgatatgttgactcctccagacctcgaaagagaaattggtttgacaggaggcaatatattccacggatccatgggattagattctctgtttttaatgcggccagtgaaaggatggtaatggttctgaatgcacaagtccttcaaggactcaagtccatgaaatgatgatttttgctattatcttaacattgaattgcaggtcaaattatcggactccaattgaaggcctatacttgtgtggcagcgggacacatcccggtggtggagtaatgggcgccccaggacgcaatgctgcgcatgttgtcattgaggacttcaagaaatcatgaagcttctcttgtgtgattcttttgacgagttcaatcagttaaaataatgacatctagtctaaaacactctggtgttatagccaaatattgcgaattagttgcttaagagtctatttgaagtctattaaatattgaagtcagtttgactgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="83476" stop="79896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83176" g_stop="83089" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83088" i_stop="81553" i_length="1536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81552" g_stop="81473" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="168" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81270" g_stop="81150" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="289" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80633" g_stop="80191" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="732" r_length="443" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E369323" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83176" e_stop="83089"/>
          <exon e_start="81552" e_stop="81473"/>
          <exon e_start="81270" e_stop="81150"/>
          <exon e_start="80633" e_stop="80191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTGGTACTCAAGTTTGCTTCCGAACTTGTTTATGCAATTATCTGTTTAATAATAAACTGCTTTTTGAATTTCTGTCAGAACTTGACCTCAATTCAACAATTATTGAATAGAAATTTAATAGAACAGTAGAAGTTTTTGGACAATTTTCTATTAATCAACTAAACGTAAGGAATATTACAACTTGAAACAAATGGAAAATGAAGCTAAAGTTTGAAAGTTTCCATAGATGAGTCCTTAATCTGCAGAAGAAGAATGAGTGGGATTAGGAAAGAAGAAGAAGAAAGGAGAGATCTGAGAGAAAAGAGAATAAGAGAGAAAGATACCAAATTTCTGTTCCCTCTTCTTTCCTCTGCAGAGTTGGTTAAATCAACGTAACTTGTGCTGGTTTGGTAGTGATGACGTGGCTGCATCTCCACCCTTTAATCTCATTAATCTACATCTAATCTGGACCGTTGCTTCTACCCGGTAGTTATAACTACTTATTGGAAGCCCAGGTCATGACAATCTCTATGGTGGTATTAAGTTTTTGAATTTGAAATTGTGAATTTCAACATTTTAAAAGTGAAGTTGTGACTCGTCTAGAGGTTGTCAACCTCTTAACCCCCTGAATGTTCACGCGAGGCTAAATTCAAAAAGGGTTTACTCCTCCATAACGGGAGCATTTGCCCCCCACACGCTTTATACCTTTGAGATATTTGTCTATGTGCTATGCACACTTTATGCTTTGTGTCTTTTGCCCTATATACACCTAGAACATTTTCCTTAAAATTTCTTTGAAGTAATTGATTAAAATTTATGTAATGTTGTCGATCTAAAAATAATAATTGGGTGCCTTGGAATATTATGTACATACTATTGTATGTTTTCCCATTATGATTAGATTAACGTTTCTACGTTCTTCACCTTTTGAATTTGACACAGTTATTAACTATCTTCAATATTTTTTTCTTACTTAACATATTTTAACTTGAAAGTTTATGGAGTCTGCTCCTTCATCTTAGGTTCTTGTAATTCAGTTGCTATGTTTATATGTTTTGCCTCTTTCCTATATTCGGAACAAGTTGATTTCCATTTTTTCGTCCATATTTTTTCTTTCATTTGGAGTCAAATTATTATTTACGTCATCTCAGATTAATCCTAGATAAGAAATCTTAAACCAATTCAACATGAAATAAGTGAAATTAAGACTGAAATCTTTATACAAGATCTGAAGTTATGTAAAGAAAAAATCTTTTTTGTGATGATGACTTAAGCTAAGTTAACAAAGATAGTCTTATGTTTAGAACAGCGTGAACAAGCTTTTGGAGGGAAATGAGTTTACACTGTTTGAGGGGTTAGAATACTGGAATTCCAAAATCATGTAGGGGTTTTAGGCTATTTCTCAACATGGGGGAGGGAATTCTAAATGTGCAAACATGACGAAGTAAAATAAACACATAGTATTATGTTATTCTCATTCAACAGAATAAGACAGATGTTATTTCTTGTGGTTTTCAATCAATACTAGAACTTACACATATTCATTATTGTTTTACCTAGGAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGAGTTAAGTATCTCTGAGTTACATTCTTTTACCCACTTTTTTCAAGTCATCTATTTCTTTTCCTTTTTCCTAGAAGGAGTAGGAGTTCTTCACTTATAACTTCGATACCTTTCAGATTTATTCACAAACTTCTTGATCCAACCTGTAGCATGTTTATGCATCACATATTTCATGTTTGTGATTAATAAAGATTTATTGCTATAGGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAGGTGCGCCACTGCTATCCTCTTGATCAGTTGTACCTTTTCTACTCCTCCCTGGAGAAAGAACCATTGCTGTATGGAATGTCCTTCATTAGTTTTCTTTTTTTGGTTGATAAATTAAAGGATAGGGACCCGAACACTTCATTGTTGTCCTTAAGTTGCCACAACATTGGCGAAGTTTATTGTAGTTCAACAACTGTACCATATAGTTTATGCACCACACAGAATTTAAATCATGTTCATAGCTTAATCTTCCTGTAAACTAACGTTTTATGATCAACTTACCTGACTTGTTTCTTGTTGAAGCATCAGTGTTTCACCCACAGTAGGTTATAAGTATCAGCATACTACAATCCTGGAAGATAAAACGAAACCTGATGTTTGGTTTATCTGAGCCCAGTCTAAGAAATTTGTGGATTGTTTTAGTTATGAGAACGAACGACTATCAGCTGGAGCATGCTTCATATAGTCCCTGGCAAAATGATATAGCAAATACTGATGTGTTGTATTATATGTTGACAGGAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGATCACAAGCGCA</genome_strand>
        <mrna_strand>CAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA..........................................................................................................................................................................................................GAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379817" ref_strand="+" ref_description="SGN-E379817 [TUS-3-B24](-)">
      <seq>caatttggccgttgacagatgnccacagttccaatgctgtaatttaagtcatccagatgctggtccacagcatggtggtaccattcacatagggccagagagcatagaagagatgcacagtgctgcacaggatgctgaaaatggcttaccatctcaacggcccataattgagatgacaattcccactgtctttgacaagacaatatctccatctggaaagcatgtgattggtttattcatccagtacacaccttataaaccctctgatggcagctgggaaaatcctgtatatagagaatcattcgctcagagatgctttagcatgatagatgaatatgctcctggatttagctcatcaattatcgggtatgatatgttgactcctccagacctcgaaagagaaattggtttgacaggaggcaatatattccacggatccatgggattagattctctgtttttaatgcggccagtgaaaggatggtcaaattatcggactccaattgaaggcctatacttgtgtggcagcgggacacatcccggtggtggagtaatgggcgccccaggacgcaatgctgcgcatgttgtcattgaggacttcaagaaatcatgaagcttctcttgtgtgattcttttgacgagttcaatcagttaaaataatgacatctagtctaaaactctctggtgttatgaccaaatattgcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="84321" stop="79957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84021" g_stop="83920" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83919" i_stop="83202" i_length="718">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83201" g_stop="83089" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="215" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83088" i_stop="81553" i_length="1536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81552" g_stop="81473" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="295" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81270" g_stop="81150" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="416" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80633" g_stop="80567" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="483" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80481" g_stop="80257" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="708" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E379817" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84021" e_stop="83920"/>
          <exon e_start="83201" e_stop="83089"/>
          <exon e_start="81552" e_stop="81473"/>
          <exon e_start="81270" e_stop="81150"/>
          <exon e_start="80633" e_stop="80567"/>
          <exon e_start="80481" e_stop="80257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAGGTATTCACATAGAGTTATCCATTTCAGATTCATTTTCTTCTGATCTGCATGGGTTGATTCATTTACGTAACCCAAGTACAAATAAACAAGAATATGAGTTAGTCTCCTAGCCTGTCATAAGTCCATGAACACAATGTTTCTGAAAATTTGTAGTTAACATGACGCTACGAGGATATACAAATGATTCATTTATCCTGTATGTAGGTCTTTTTTGACTTAAAAGACAAGTTGTTTACTGGTGAATAGAGAATGCCAGAATTGAGTGGAATGGATTTTAGAAGATTGATATTGTATTGAGGCTTAGTTGATTGATTGTGCTCAAATCAGTTTAGTTTGTTGCTCATTGGATGAGCAAAAGTTAAAAGCTTACTTCCATGTCAAATAGGCAAGAATCTCTTATTCCAATCTGTTGAAATGACAAGAGAGGGATGCTCGTATAGTAAACACCCTCCAACTCCAACCCTAACCCTGAGGTTATGAGTTTGAGTTCCTCTGGGAGAAAAATGCAGAACTCCTAGGGAGGGGTAAAAAACATCAGTCAAATCTGATAGTAATGATCTTTGAGTTTTTTTAACACATAACAAGAAGGTTTGCCCACAATCTATCTTTCTAATACTGACATTGAACAAATTATTATAGGTGTCATCATTCTTGCCTTTCCTGTTATTTTAATTATGATTTTAATCCATAGACAACTATATAATTTTGGTGCTTGTAGCATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTGGTACTCAAGTTTGCTTCCGAACTTGTTTATGCAATTATCTGTTTAATAATAAACTGCTTTTTGAATTTCTGTCAGAACTTGACCTCAATTCAACAATTATTGAATAGAAATTTAATAGAACAGTAGAAGTTTTTGGACAATTTTCTATTAATCAACTAAACGTAAGGAATATTACAACTTGAAACAAATGGAAAATGAAGCTAAAGTTTGAAAGTTTCCATAGATGAGTCCTTAATCTGCAGAAGAAGAATGAGTGGGATTAGGAAAGAAGAAGAAGAAAGGAGAGATCTGAGAGAAAAGAGAATAAGAGAGAAAGATACCAAATTTCTGTTCCCTCTTCTTTCCTCTGCAGAGTTGGTTAAATCAACGTAACTTGTGCTGGTTTGGTAGTGATGACGTGGCTGCATCTCCACCCTTTAATCTCATTAATCTACATCTAATCTGGACCGTTGCTTCTACCCGGTAGTTATAACTACTTATTGGAAGCCCAGGTCATGACAATCTCTATGGTGGTATTAAGTTTTTGAATTTGAAATTGTGAATTTCAACATTTTAAAAGTGAAGTTGTGACTCGTCTAGAGGTTGTCAACCTCTTAACCCCCTGAATGTTCACGCGAGGCTAAATTCAAAAAGGGTTTACTCCTCCATAACGGGAGCATTTGCCCCCCACACGCTTTATACCTTTGAGATATTTGTCTATGTGCTATGCACACTTTATGCTTTGTGTCTTTTGCCCTATATACACCTAGAACATTTTCCTTAAAATTTCTTTGAAGTAATTGATTAAAATTTATGTAATGTTGTCGATCTAAAAATAATAATTGGGTGCCTTGGAATATTATGTACATACTATTGTATGTTTTCCCATTATGATTAGATTAACGTTTCTACGTTCTTCACCTTTTGAATTTGACACAGTTATTAACTATCTTCAATATTTTTTTCTTACTTAACATATTTTAACTTGAAAGTTTATGGAGTCTGCTCCTTCATCTTAGGTTCTTGTAATTCAGTTGCTATGTTTATATGTTTTGCCTCTTTCCTATATTCGGAACAAGTTGATTTCCATTTTTTCGTCCATATTTTTTCTTTCATTTGGAGTCAAATTATTATTTACGTCATCTCAGATTAATCCTAGATAAGAAATCTTAAACCAATTCAACATGAAATAAGTGAAATTAAGACTGAAATCTTTATACAAGATCTGAAGTTATGTAAAGAAAAAATCTTTTTTGTGATGATGACTTAAGCTAAGTTAACAAAGATAGTCTTATGTTTAGAACAGCGTGAACAAGCTTTTGGAGGGAAATGAGTTTACACTGTTTGAGGGGTTAGAATACTGGAATTCCAAAATCATGTAGGGGTTTTAGGCTATTTCTCAACATGGGGGAGGGAATTCTAAATGTGCAAACATGACGAAGTAAAATAAACACATAGTATTATGTTATTCTCATTCAACAGAATAAGACAGATGTTATTTCTTGTGGTTTTCAATCAATACTAGAACTTACACATATTCATTATTGTTTTACCTAGGAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGAGTTAAGTATCTCTGAGTTACATTCTTTTACCCACTTTTTTCAAGTCATCTATTTCTTTTCCTTTTTCCTAGAAGGAGTAGGAGTTCTTCACTTATAACTTCGATACCTTTCAGATTTATTCACAAACTTCTTGATCCAACCTGTAGCATGTTTATGCATCACATATTTCATGTTTGTGATTAATAAAGATTTATTGCTATAGGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAGGTGCGCCACTGCTATCCTCTTGATCAGTTGTACCTTTTCTACTCCTCCCTGGAGAAAGAACCATTGCTGTATGGAATGTCCTTCATTAGTTTTCTTTTTTTGGTTGATAAATTAAAGGATAGGGACCCGAACACTTCATTGTTGTCCTTAAGTTGCCACAACATTGGCGAAGTTTATTGTAGTTCAACAACTGTACCATATAGTTTATGCACCACACAGAATTTAAATCATGTTCATAGCTTAATCTTCCTGTAAACTAACGTTTTATGATCAACTTACCTGACTTGTTTCTTGTTGAAGCATCAGTGTTTCACCCACAGTAGGTTATAAGTATCAGCATACTACAATCCTGGAAGATAAAACGAAACCTGATGTTTGGTTTATCTGAGCCCAGTCTAAGAAATTTGTGGATTGTTTTAGTTATGAGAACGAACGACTATCAGCTGGAGCATGCTTCATATAGTCCCTGGCAAAATGATATAGCAAATACTGATGTGTTGTATTATATGTTGACAGGAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAAT</genome_strand>
        <mrna_strand>CAATTTGGCCGTTGACAGATGNCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA..........................................................................................................................................................................................................GAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG.....................................................................................GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACTCTCTGGTGTTATGACCAAATATTGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404311" ref_strand="+" ref_description="SGN-E404311 [PPC-13-G6]">
      <seq>ctggaacggtactaccaaaaattaaattgaccatcaacatattaccataattttcagtgctgcagttcaggctaaacatttctagtttggttgttaatcttttgtacctggaattttaaaggttcattgcttactgaaataggctactacaaaaatcaatttggccgttgacagattgccacagttccaatgctgcaatttaagtcatccagatgctggtccacagcatggtggtaccattcacatagggccagagagtatagaagagatgcacagtgctgcacaggatgctgaaaatggtttaccatctcgacggcccataattgagatgacaattcctactgtctttgacaagacaatctctccatctgcatgtgattggtttattcatccagtacacaccttataaaccctctgatggcagctgggaaaatcctgtatatagagaatcatttgcccagagatgctttagcatgatagatgaatatgctcctggatttagctcatcaattattgggtatgatatgttaactcctccagaccttgaaagagaaattggtctgacaggaggcaatatattccacggatccatgggattagattctctgtttttaatgcggccagtgaaaggatggtcaaattatcggactccaattgaaggcctatacttgtgtggcagcgggacacatcctgggtggtggagtaatgggcgccccaggacgcnatgctgctcatgttgtgattgaagacttcagaaatcatgaagctgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="84468" stop="80045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84177" g_stop="83920" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83919" i_stop="83202" i_length="718">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83201" g_stop="83089" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="371" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83088" i_stop="81548" i_length="1541">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81547" g_stop="81473" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81270" g_stop="81150" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="567" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516">
            <donor d_prob="0.644" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80633" g_stop="80567" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="634" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80481" g_stop="80342" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="774" r_length="140" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E404311" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84177" e_stop="83920"/>
          <exon e_start="83201" e_stop="83089"/>
          <exon e_start="81547" e_stop="81473"/>
          <exon e_start="81270" e_stop="81150"/>
          <exon e_start="80633" e_stop="80567"/>
          <exon e_start="80481" e_stop="80342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATATTACTACCATAAATCAAATTGACCATCAACATATTACCATAATTTTCAGTGCTGCAGTTCAGGTTAAACATTTCATGTTTGGTTGTTAATCTTCTGTACCTGAAATTTTAAAGGTTCATTGTTTGCTGAAATAGGCTACTACAAAAATCAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAGGTATTCACATAGAGTTATCCATTTCAGATTCATTTTCTTCTGATCTGCATGGGTTGATTCATTTACGTAACCCAAGTACAAATAAACAAGAATATGAGTTAGTCTCCTAGCCTGTCATAAGTCCATGAACACAATGTTTCTGAAAATTTGTAGTTAACATGACGCTACGAGGATATACAAATGATTCATTTATCCTGTATGTAGGTCTTTTTTGACTTAAAAGACAAGTTGTTTACTGGTGAATAGAGAATGCCAGAATTGAGTGGAATGGATTTTAGAAGATTGATATTGTATTGAGGCTTAGTTGATTGATTGTGCTCAAATCAGTTTAGTTTGTTGCTCATTGGATGAGCAAAAGTTAAAAGCTTACTTCCATGTCAAATAGGCAAGAATCTCTTATTCCAATCTGTTGAAATGACAAGAGAGGGATGCTCGTATAGTAAACACCCTCCAACTCCAACCCTAACCCTGAGGTTATGAGTTTGAGTTCCTCTGGGAGAAAAATGCAGAACTCCTAGGGAGGGGTAAAAAACATCAGTCAAATCTGATAGTAATGATCTTTGAGTTTTTTTAACACATAACAAGAAGGTTTGCCCACAATCTATCTTTCTAATACTGACATTGAACAAATTATTATAGGTGTCATCATTCTTGCCTTTCCTGTTATTTTAATTATGATTTTAATCCATAGACAACTATATAATTTTGGTGCTTGTAGCATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTGGTACTCAAGTTTGCTTCCGAACTTGTTTATGCAATTATCTGTTTAATAATAAACTGCTTTTTGAATTTCTGTCAGAACTTGACCTCAATTCAACAATTATTGAATAGAAATTTAATAGAACAGTAGAAGTTTTTGGACAATTTTCTATTAATCAACTAAACGTAAGGAATATTACAACTTGAAACAAATGGAAAATGAAGCTAAAGTTTGAAAGTTTCCATAGATGAGTCCTTAATCTGCAGAAGAAGAATGAGTGGGATTAGGAAAGAAGAAGAAGAAAGGAGAGATCTGAGAGAAAAGAGAATAAGAGAGAAAGATACCAAATTTCTGTTCCCTCTTCTTTCCTCTGCAGAGTTGGTTAAATCAACGTAACTTGTGCTGGTTTGGTAGTGATGACGTGGCTGCATCTCCACCCTTTAATCTCATTAATCTACATCTAATCTGGACCGTTGCTTCTACCCGGTAGTTATAACTACTTATTGGAAGCCCAGGTCATGACAATCTCTATGGTGGTATTAAGTTTTTGAATTTGAAATTGTGAATTTCAACATTTTAAAAGTGAAGTTGTGACTCGTCTAGAGGTTGTCAACCTCTTAACCCCCTGAATGTTCACGCGAGGCTAAATTCAAAAAGGGTTTACTCCTCCATAACGGGAGCATTTGCCCCCCACACGCTTTATACCTTTGAGATATTTGTCTATGTGCTATGCACACTTTATGCTTTGTGTCTTTTGCCCTATATACACCTAGAACATTTTCCTTAAAATTTCTTTGAAGTAATTGATTAAAATTTATGTAATGTTGTCGATCTAAAAATAATAATTGGGTGCCTTGGAATATTATGTACATACTATTGTATGTTTTCCCATTATGATTAGATTAACGTTTCTACGTTCTTCACCTTTTGAATTTGACACAGTTATTAACTATCTTCAATATTTTTTTCTTACTTAACATATTTTAACTTGAAAGTTTATGGAGTCTGCTCCTTCATCTTAGGTTCTTGTAATTCAGTTGCTATGTTTATATGTTTTGCCTCTTTCCTATATTCGGAACAAGTTGATTTCCATTTTTTCGTCCATATTTTTTCTTTCATTTGGAGTCAAATTATTATTTACGTCATCTCAGATTAATCCTAGATAAGAAATCTTAAACCAATTCAACATGAAATAAGTGAAATTAAGACTGAAATCTTTATACAAGATCTGAAGTTATGTAAAGAAAAAATCTTTTTTGTGATGATGACTTAAGCTAAGTTAACAAAGATAGTCTTATGTTTAGAACAGCGTGAACAAGCTTTTGGAGGGAAATGAGTTTACACTGTTTGAGGGGTTAGAATACTGGAATTCCAAAATCATGTAGGGGTTTTAGGCTATTTCTCAACATGGGGGAGGGAATTCTAAATGTGCAAACATGACGAAGTAAAATAAACACATAGTATTATGTTATTCTCATTCAACAGAATAAGACAGATGTTATTTCTTGTGGTTTTCAATCAATACTAGAACTTACACATATTCATTATTGTTTTACCTAGGAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGAGTTAAGTATCTCTGAGTTACATTCTTTTACCCACTTTTTTCAAGTCATCTATTTCTTTTCCTTTTTCCTAGAAGGAGTAGGAGTTCTTCACTTATAACTTCGATACCTTTCAGATTTATTCACAAACTTCTTGATCCAACCTGTAGCATGTTTATGCATCACATATTTCATGTTTGTGATTAATAAAGATTTATTGCTATAGGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAGGTGCGCCACTGCTATCCTCTTGATCAGTTGTACCTTTTCTACTCCTCCCTGGAGAAAGAACCATTGCTGTATGGAATGTCCTTCATTAGTTTTCTTTTTTTGGTTGATAAATTAAAGGATAGGGACCCGAACACTTCATTGTTGTCCTTAAGTTGCCACAACATTGGCGAAGTTTATTGTAGTTCAACAACTGTACCATATAGTTTATGCACCACACAGAATTTAAATCATGTTCATAGCTTAATCTTCCTGTAAACTAACGTTTTATGATCAACTTACCTGACTTGTTTCTTGTTGAAGCATCAGTGTTTCACCCACAGTAGGTTATAAGTATCAGCATACTACAATCCTGGAAGATAAAACGAAACCTGATGTTTGGTTTATCTGAGCCCAGTCTAAGAAATTTGTGGATTGTTTTAGTTATGAGAACGAACGACTATCAGCTGGAGCATGCTTCATATAGTCCCTGGCAAAATGATATAGCAAATACTGATGTGTTGTATTATATGTTGACAGGAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGG-TGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTT</genome_strand>
        <mrna_strand>CTGGAACGGTACTACCAAAAATTAAATTGACCATCAACATATTACCATAATTTTCAGTGCTGCAGTTCAGGCTAAACATTTCTAGTTTGGTTGTTAATCTTTTGTACCTGGAATTTTAAAGGTTCATTGCTTACTGAAATAGGCTACTACAAAAATCAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGCAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGTTTACCATCTCGACGGCCCATAATTGAGATGACAATTCCTACTGTCTTTGACAAGACAATCTCTCCATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA..........................................................................................................................................................................................................GAATCATTTGCCCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATTGGGTATGATATGTTAACTCCTCCAGACCTTGAAAGAGAAATTGGTCTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG.....................................................................................GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCTGGGTGGTGGAGTAATGGGCGCCCCAGGACGCNATGCTGCTCATGTTGTGATTGAAGACTTC-AGAAATCATGAAGCTGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433829" ref_strand="+" ref_description="SGN-E433829 [STM-59-E21]">
      <seq>ctggaacggtactaccaaaaattaaattgaccatcaacatattaccataattttcagtgctgcagttcaggctaaacatttctagtttggttgttaatcttttgtacctggaattttaaaggttcattgcttactgaaataggctactacaaaaatcaatttggccgttgacagattgccacagttccaatgctgcaatttaagtcatccagatgctggtccacagcatggtggtaccattcacatagggccagagagtatagaagagatgcacagtgctgcacaggatgctgaaaatggtttaccatctcgacggcccataattgagatgacaattcctactgtctttgacaagacaatctctccatctgcatgtgattggtttattcatccagtacacaccttataaaccctctgatggcagctgggaaaatcctgtatatagagaatcatttgcccagagatgctttagcatgatagatgaatatgctcctggatttagctcatcaattattgggtatgatatgttaactcctccagaccttgaaagagaaattggtctgacaggaggcaatatattccacggatccatgggattagattctctgtttttaatgcggccagtgaaaggatggtcaaattatcggactccaattgaaggcctatacttgtgtggcagcgggacacatcctggtggtggagtaatgggcgccccaggacgcaatgctgctcatgttgtgattgaagacttcaagaaatcatgaagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="84468" stop="80045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84177" g_stop="83920" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83919" i_stop="83202" i_length="718">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83201" g_stop="83089" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="371" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83088" i_stop="81548" i_length="1541">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81547" g_stop="81473" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81270" g_stop="81150" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="567" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516">
            <donor d_prob="0.644" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80633" g_stop="80567" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="634" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80481" g_stop="80344" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="772" r_length="138" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E433829" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84177" e_stop="83920"/>
          <exon e_start="83201" e_stop="83089"/>
          <exon e_start="81547" e_stop="81473"/>
          <exon e_start="81270" e_stop="81150"/>
          <exon e_start="80633" e_stop="80567"/>
          <exon e_start="80481" e_stop="80344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATATTACTACCATAAATCAAATTGACCATCAACATATTACCATAATTTTCAGTGCTGCAGTTCAGGTTAAACATTTCATGTTTGGTTGTTAATCTTCTGTACCTGAAATTTTAAAGGTTCATTGTTTGCTGAAATAGGCTACTACAAAAATCAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAGGTATTCACATAGAGTTATCCATTTCAGATTCATTTTCTTCTGATCTGCATGGGTTGATTCATTTACGTAACCCAAGTACAAATAAACAAGAATATGAGTTAGTCTCCTAGCCTGTCATAAGTCCATGAACACAATGTTTCTGAAAATTTGTAGTTAACATGACGCTACGAGGATATACAAATGATTCATTTATCCTGTATGTAGGTCTTTTTTGACTTAAAAGACAAGTTGTTTACTGGTGAATAGAGAATGCCAGAATTGAGTGGAATGGATTTTAGAAGATTGATATTGTATTGAGGCTTAGTTGATTGATTGTGCTCAAATCAGTTTAGTTTGTTGCTCATTGGATGAGCAAAAGTTAAAAGCTTACTTCCATGTCAAATAGGCAAGAATCTCTTATTCCAATCTGTTGAAATGACAAGAGAGGGATGCTCGTATAGTAAACACCCTCCAACTCCAACCCTAACCCTGAGGTTATGAGTTTGAGTTCCTCTGGGAGAAAAATGCAGAACTCCTAGGGAGGGGTAAAAAACATCAGTCAAATCTGATAGTAATGATCTTTGAGTTTTTTTAACACATAACAAGAAGGTTTGCCCACAATCTATCTTTCTAATACTGACATTGAACAAATTATTATAGGTGTCATCATTCTTGCCTTTCCTGTTATTTTAATTATGATTTTAATCCATAGACAACTATATAATTTTGGTGCTTGTAGCATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTGGTACTCAAGTTTGCTTCCGAACTTGTTTATGCAATTATCTGTTTAATAATAAACTGCTTTTTGAATTTCTGTCAGAACTTGACCTCAATTCAACAATTATTGAATAGAAATTTAATAGAACAGTAGAAGTTTTTGGACAATTTTCTATTAATCAACTAAACGTAAGGAATATTACAACTTGAAACAAATGGAAAATGAAGCTAAAGTTTGAAAGTTTCCATAGATGAGTCCTTAATCTGCAGAAGAAGAATGAGTGGGATTAGGAAAGAAGAAGAAGAAAGGAGAGATCTGAGAGAAAAGAGAATAAGAGAGAAAGATACCAAATTTCTGTTCCCTCTTCTTTCCTCTGCAGAGTTGGTTAAATCAACGTAACTTGTGCTGGTTTGGTAGTGATGACGTGGCTGCATCTCCACCCTTTAATCTCATTAATCTACATCTAATCTGGACCGTTGCTTCTACCCGGTAGTTATAACTACTTATTGGAAGCCCAGGTCATGACAATCTCTATGGTGGTATTAAGTTTTTGAATTTGAAATTGTGAATTTCAACATTTTAAAAGTGAAGTTGTGACTCGTCTAGAGGTTGTCAACCTCTTAACCCCCTGAATGTTCACGCGAGGCTAAATTCAAAAAGGGTTTACTCCTCCATAACGGGAGCATTTGCCCCCCACACGCTTTATACCTTTGAGATATTTGTCTATGTGCTATGCACACTTTATGCTTTGTGTCTTTTGCCCTATATACACCTAGAACATTTTCCTTAAAATTTCTTTGAAGTAATTGATTAAAATTTATGTAATGTTGTCGATCTAAAAATAATAATTGGGTGCCTTGGAATATTATGTACATACTATTGTATGTTTTCCCATTATGATTAGATTAACGTTTCTACGTTCTTCACCTTTTGAATTTGACACAGTTATTAACTATCTTCAATATTTTTTTCTTACTTAACATATTTTAACTTGAAAGTTTATGGAGTCTGCTCCTTCATCTTAGGTTCTTGTAATTCAGTTGCTATGTTTATATGTTTTGCCTCTTTCCTATATTCGGAACAAGTTGATTTCCATTTTTTCGTCCATATTTTTTCTTTCATTTGGAGTCAAATTATTATTTACGTCATCTCAGATTAATCCTAGATAAGAAATCTTAAACCAATTCAACATGAAATAAGTGAAATTAAGACTGAAATCTTTATACAAGATCTGAAGTTATGTAAAGAAAAAATCTTTTTTGTGATGATGACTTAAGCTAAGTTAACAAAGATAGTCTTATGTTTAGAACAGCGTGAACAAGCTTTTGGAGGGAAATGAGTTTACACTGTTTGAGGGGTTAGAATACTGGAATTCCAAAATCATGTAGGGGTTTTAGGCTATTTCTCAACATGGGGGAGGGAATTCTAAATGTGCAAACATGACGAAGTAAAATAAACACATAGTATTATGTTATTCTCATTCAACAGAATAAGACAGATGTTATTTCTTGTGGTTTTCAATCAATACTAGAACTTACACATATTCATTATTGTTTTACCTAGGAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGAGTTAAGTATCTCTGAGTTACATTCTTTTACCCACTTTTTTCAAGTCATCTATTTCTTTTCCTTTTTCCTAGAAGGAGTAGGAGTTCTTCACTTATAACTTCGATACCTTTCAGATTTATTCACAAACTTCTTGATCCAACCTGTAGCATGTTTATGCATCACATATTTCATGTTTGTGATTAATAAAGATTTATTGCTATAGGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAGGTGCGCCACTGCTATCCTCTTGATCAGTTGTACCTTTTCTACTCCTCCCTGGAGAAAGAACCATTGCTGTATGGAATGTCCTTCATTAGTTTTCTTTTTTTGGTTGATAAATTAAAGGATAGGGACCCGAACACTTCATTGTTGTCCTTAAGTTGCCACAACATTGGCGAAGTTTATTGTAGTTCAACAACTGTACCATATAGTTTATGCACCACACAGAATTTAAATCATGTTCATAGCTTAATCTTCCTGTAAACTAACGTTTTATGATCAACTTACCTGACTTGTTTCTTGTTGAAGCATCAGTGTTTCACCCACAGTAGGTTATAAGTATCAGCATACTACAATCCTGGAAGATAAAACGAAACCTGATGTTTGGTTTATCTGAGCCCAGTCTAAGAAATTTGTGGATTGTTTTAGTTATGAGAACGAACGACTATCAGCTGGAGCATGCTTCATATAGTCCCTGGCAAAATGATATAGCAAATACTGATGTGTTGTATTATATGTTGACAGGAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTC</genome_strand>
        <mrna_strand>CTGGAACGGTACTACCAAAAATTAAATTGACCATCAACATATTACCATAATTTTCAGTGCTGCAGTTCAGGCTAAACATTTCTAGTTTGGTTGTTAATCTTTTGTACCTGGAATTTTAAAGGTTCATTGCTTACTGAAATAGGCTACTACAAAAATCAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGCAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGTTTACCATCTCGACGGCCCATAATTGAGATGACAATTCCTACTGTCTTTGACAAGACAATCTCTCCATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA..........................................................................................................................................................................................................GAATCATTTGCCCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATTGGGTATGATATGTTAACTCCTCCAGACCTTGAAAGAGAAATTGGTCTGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG.....................................................................................GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCTGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCTCATGTTGTGATTGAAGACTTCAAGAAATCATGAAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581386" ref_strand="+" ref_description="SGN-E581386 [6629]">
      <seq>ccccagcttcgaaggttttgaataactggtttgagggagatgttctgaaagtaactcttgcaactgatgcagtgatagggtccacgggcaagtgttcatacgcctgggaagtggatatgtattgctacatcatgtgatgggagaatctgatggtgatcgtggtatttggtcgtatgttgaagggggaatgggctccgtgtcatcggctatagctgctgctgcaaaggaggctggtgcaaccatattgacaaatgccgaagtctcgaaattgatgattgaagacacaggcagagtgcatggggtattgctggctgacgggaaccatattgcattcttctggtgttttatcgaatgccacacattcaaaaatttcatggatccttgtgccagaatgatgtgcttcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="88622" stop="85076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88322" g_stop="88288" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88287" i_stop="87544" i_length="744">
            <donor d_prob="0.912" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87543" g_stop="87493" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="87" r_length="52" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87492" i_stop="86841" i_length="652">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86840" g_stop="86758" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="171" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86757" i_stop="86142" i_length="616">
            <donor d_prob="0.562" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86141" g_stop="86054" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="259" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86053" i_stop="85584" i_length="470">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85583" g_stop="85542" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="301" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85541" i_stop="85452" i_length="90">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85451" g_stop="85377" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="376" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85376" i_stop="85250" i_length="127">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85249" g_stop="85220" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="408" r_length="32" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E581386" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88322" e_stop="88288"/>
          <exon e_start="87543" e_stop="87493"/>
          <exon e_start="86840" e_stop="86758"/>
          <exon e_start="86141" e_stop="86054"/>
          <exon e_start="85583" e_stop="85542"/>
          <exon e_start="85451" e_stop="85377"/>
          <exon e_start="85249" e_stop="85220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGCTTCGAAGGTTTTGAATAACTGGTTTGAGGTTGCTAATTTTTTACTTTACTTGGTCTATCAGTTTGCTTAAAATAATTCTGTTTCATATATGAAATTGTCTCAAGGTTCAAGATTGTGACCTGATCAATGCTTTCTATCATTATTTTGTGTCAAATATGCTTTTGTCCTTAGATAGTGTTGGGAACCTAAGATGAGTGAGTTCTATAAGCTTCTAATTTTTAAGGCTACTTATCATTGTAGTATAATGTTTTCTCTTGGTTTGTATATTTCCAGGTTTTTCATTGCAATTGTTTCGTTTATCAATTTTGGCTTTTGTCTTGTCACAACTTAACTAGATCAGAAGTAGCTCATCTGTCTTTGTTGGAGTGGAGGAGGATGTTTTGTTATTTTGTCTTCTTTACCACCGATATTCAATTATCCTTTCCACAATCGATTATAAATGTCTTCTTCAATCAGGTGAACTGTGTTGTGGGGGGCTGGGGCAGAGAAGCTTAAATGGTATGTCTTATTTTCGAAGCAAAACTCTCCAAATTCGACATAAACAGAATCTTTGAAATGAACAAGAATTTCAATGGATAGAAATCACTTTCTTCTGGTGTATGTATTAATTAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCAC-GGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGAAGTAGCAGGCTTGAGTACCTCTTGGACCACTCTGAAATTCTTACAAAAACATGTAGGACTAAGAGTTTTTTGAGTCTCTAGTCAGGCAGGAAAGAAAAACAGGTTCTTTTAGTGTTCCCCGGGTTTTGTCATTCTTCACATTCTCATCAGTTTAATGTAACCTTGTTTGTGTCATATCCAAATGCCAATTCAATGAAATTTTGATTAATATTCGTTATCATGTCAGTTCAGTTTGTTTCATACTTCTCTCCTCCCTCTTTTTGCTGTTCATCTGTCAACTAATTTATAAATTCATAGGCAAGTGTTCATACGCCT-GGAAGTGGATATGTATTGCTACATCACGTGATGGGAGAATCTGATGGTGATCGTGGTATTTGGTCGTACGTATACAACATTGCAAATTTTTAACGACTTCCGCATTTTCGTAAAATCATTTGTTTCATTTTATCTGAAGGATTCTGCTTTGGAGTACTTGCTTTAAATCTTCCAATTATTTAATGAAATACACACTGAATTAAGAAAGAGTTCTATTTCATTTTCGTTTTCAATCTTTTTAAATATTGGAGCCTTAAATAACTTTCACATTTTAATGTGTTCTGCTTTTGTCATACTAGAAAATAGTTACATCTAATGAATTTAGCTGCTTATCGTAGATTAAGCAAAAGCAGTAAACTGTTCTTTCTCTCTGCCTTTATGCGGTGCCCACTTACTCCACTTTGTTTGGTATCCCTTGTATCCATCCTCCTTAATCCCCAAGACGAAGGCTTTATGTGAGCCCACATATTTGAATTATTGCAACTTACGGTTGACTATTTAGAGAGATGGGACACATTTGCTTCTACCTTCGAAATCTTTATTAACTTAGGCACTCAAAATATTTTAGGTGATGCGTTTTTGTTTCAAATCCAAAGTTACCTTTCTTAAATTGACTGGGTGGTTTTATCATGTTGTCCTCTCTTACTAAAATAAATGCTTGACGGTTGTATTTACATGTAGGTATGTTGAAGGGGGAATGGGCACTGTGTCATCGGCTATAGCTGCTGCTGCAAAGGAGGCTGGTGCAACCATATTGACAAATGCCAAAGTATGCTTACGCCCCGTGATGCATCCACTGCCTCTTCACTGTAAAGAGAATGAGTATTTCGGCTCAGAGTTATTTGCTTTTGAGTATCTAACATACATCTAGAGCTTTAGATGTTTTCTTGGTAAATTTCTTTTTTTGGGGTGGGGGTGGAGGAGTTGATTTCCTTGTTTTTGGTTCTATCGTTTATCTTTTTATTATTTTCATTTGCACCTGGGGGTGGGGGAGTTATGTGTGAATAATCCACCTATATTTCTTATGGACGAAATACGGTCCTCGTTCCCTGGCCTTTTTGTTAATTTATTAGTGAATATTCAGTATGACTATTTTCTTTCCGTGATCACGTTTTAAAATAAAAAACTAAGAAGATCAAACTAATATTTTTCTCTTATACTTTCACAACTTTCTGTCCCTTTCTTTAATTGTGTTTGAAGTTGCATCTTTTGAAGGAAAATATTATTTTGTTGACGTAGGTCTCGAAATTGATGATTGAAGACACGGGCAGAGTGCATGGGGTTAGTTTCACTAAGTTGTCTTTCCAATAGTTTACCTTTTATAGCAAGTCAAAGTTGCTCTTGATGTGTTAAATTGGATGGAATTTTTAGGTATTGCTGGCTGATGGG-ACCATATTGCATTCTTCTGTTGTTTTATCGAATGCAACACCATTCAAAACTTTCATGGTAAAAAGTTGTTCCTCTTCTTTTATTTCAACAAATTTAGGCCAGCAGTGGCACATTATTACAAAATATCAAAGAAAAGAATCCTATTTTAACAGTGCCCTCTGACTACGTTTCTCCCACAACCCAGGAT-CTTGTGCCAG-ATGATGTGCTTCCTCGT</genome_strand>
        <mrna_strand>CCCCAGCTTCGAAGGTTTTGAATAACTGGTTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGTCCACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGTTCATACGCCTGGGAAGTGGATATGTATTGCTACATCATGTGATGGGAGAATCTGATGGTGATCGTGGTATTTGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTGAAGGGGGAATGGGCTCCGTGTCATCGGCTATAGCTGCTGCTGCAAAGGAGGCTGGTGCAACCATATTGACAAATGCCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGAAATTGATGATTGAAGACACAGGCAGAGTGCATGGG..........................................................................................GTATTGCTGGCTGACGGGAACCATATTGCATTCTTCTGGTGTTTTATCGAATGCCACA-CATTCAAAAATTTCATG...............................................................................................................................GATCCTTGTGCCAGAATGATGTGCTTCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379016" ref_strand="+" ref_description="SGN-E379016 [TUS-3-B24]">
      <seq>ccgggctgcaggttaatcaatcgtgttgatgtactggaagctgctactacatgttcttatgctgtgtacaattttgttacattcctcaaaagacgtttcgaaaaattctcacatctttagcataatcccttctggtgtcactagcttactaattgtgtgtgcttgactgaaatatcacaggcagatgttctgaaagtaactcttgcaactgatgcagtgatagggaccacggtaagcttttttcatgtgggttgttccagaatgtgtcgaatgatgcatggaggaacagtcaattgctgcatacattgtttgcatctataaagacttgtaatgtatatctaggatcccacatatatatgattcggcagtgctgaaaagtaaatgttctgttattctgcattaccatatatttagtgaaaatgattgaatgttttaagtgaaaaatgtgcttacttatgggatcatgtagaagtcatgtctttgcagcaaatattggacgtttcacatggcccatggtttagaaatttcttttaagttatatgcatatatccgccatacatttactggcagttctccatctgcatgaagtagcaggcttgagtacctcttggaccactctgaaattcttacaaaaacatgtangactaagagttttttgagtctctagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="88011" stop="86755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87723" g_stop="87055" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E379016" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87723" e_stop="87055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTATGTATTAATTAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACGGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGAAGTAGCAGGCTTGAGTACCTCTTGGACCACTCTGAAATTCTTACAAAAACATGTAGGACTAAGAGTTTTTTGAGTCTCTAGTC</genome_strand>
        <mrna_strand>CCGGGCTGCAGGTTAATCAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACGGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGAAGTAGCAGGCTTGAGTACCTCTTGGACCACTCTGAAATTCTTACAAAAACATGTANGACTAAGAGTTTTTTGAGTCTCTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209969" ref_strand="+" ref_description="SGN-E209969 [cLEC-40-K23]">
      <seq>taattaatcgtgttgatgtactggaagctgctactacatgttcttatgctgtgtacaattttgttacattcctcaaaagacgtttcgaaaaattctcacatctttagcataatcccttctggtgtcactagcttactaattgtgtgtgcttgactgaaatatcacaggcagatgttctgaaagtaactcttgcaactgatgcagtgatagggaccacggtaagcttttttcatgtgggttgttccagaatgtgtcgaatgatgcatggaggaacagtcaattgctgcatacattgtttgcatctataaagacttgtaatgtatatctaggatcccacatatatatgattcggcagtgctgaaaagtaaatgttctgttattctgcattaccatatatttagtgaaaatgattgaatgttttaagtgaaaaatgtgcttacttatgggatcatgtagaagtcatgtctttgcagcaaatattggacgtttcacatggcccatggtttagaaatttcttttaagttatatgcatatatccgccatacatttactggcagttctccatctgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="88010" stop="86838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87710" g_stop="87138" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E209969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87710" e_stop="87138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACGGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGA</genome_strand>
        <mrna_strand>TAATTAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACGGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469195" ref_strand="+" ref_description="SGN-E469195 [cSTB-10-F2]">
      <seq>gttaaattcagagattaggaaaaaaaaaagttaaaaaatgtggagacaattccgaaaatttagcagtagcagcagcttcagtgcaaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcatatctcgctcgttccggtctctccgttgccgttctcgagagacgccacatcataggcggtgctgctgtcactgaagaactcattcctggtttcaagttttctcgttgtagttacctacaaagcctccttagaccctgcgttataaaagaattggagttgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcttcttgacggacgctatcttctgcttggttctgacaaggagctcaactattctcagatttcaaagttttctaaatctgatgctgatgcttattcaaggtatgagagtcaacttgacaagttttgtgagtttctggacccacttctggattcgtctacaccagaaactctacaaggctcttcacatctcaatactcgtatgaggcacaaattgcaaaactcagcgttttgggctaattgtctccgtcgagcactccacttgggacagaaagacctagtggacttgatggaccttttactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90153" stop="88023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89876" g_stop="89579" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89335" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="456" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88675" g_stop="88496" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="636" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88495" i_stop="88346" i_length="150">
            <donor d_prob="0.860" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88345" g_stop="88323" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="659" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E469195" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89876" e_stop="89579"/>
          <exon e_start="89496" e_stop="89335"/>
          <exon e_start="88675" e_stop="88496"/>
          <exon e_start="88345" e_stop="88323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAGGTTCAGTATTTATTTTTATACTGGTCGTTACTTCAACTTTATGTATTCTCTGGCAACTTTGTTTGCTGCAATTTTATTTTAAAAGACAAAGAGGTTAAATAACCATGTTTTTCTACACGAGAATTGAACCTTGAGCAATTCATTTTGTCGAAAAAGCATTTGATTATTTTAAGGCGATTAAATGCAACAGTGCTGAGGTGAACTAGACTATAAGATGGAGATACATAGGTGTACAGCCATTTGTGTGGTGGATTAACTCATATACATCATTGAGAATGCTTCAGTTAAGCTCTGATCATGTCTATGATTGGAAAATAGATACGGCATGTAGCTCGTGTCCATATCACTGGAATCTGGTTCACCTTTCTTCAATACTGAAATTTAATGTGTTCATTGTTCTTGACACTTTCAAGATTGACATACTCAAGATGGAGAACCCAAGGGTTCTTCGCCTGCTAACTTAACGGGAAGAAAAAATAAGTTCCCTGCCAAAAATTTCCAGGCATGGAACTTGATGATAATTTAGCAGAATTTGAGGATTGAGCTCACTTAGCACCCTAAAGTCTGAATGAGAATTCATATATTTCTTTCTGCTCATCATTTTATCTATTACTATCATACTCTAAATTTTTGAGTTACCAAGTGCCACCTAATTGTAGGTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGCACTCCACTTGGGACAAAAGGACCTAGTGTAAGATGTTCTAGATGGTCCTGTTTGCATAATTTCACCAAACCTATTGTTATCAACTGGACATACTAGGGCAACATCTACTCAAATAGTATGAAGTCTCGACTTCAACTGTCATAGTCCATGTTTAATTGTTTCCACTGGACTTTTCAGGGACTTGATGGACCTTTTACTCG</genome_strand>
        <mrna_strand>GTTAAATTCAGAGATTAGG---A-AAAAAAAAAGTTAAAAAATGTGGAGACAATTCCGAAAATTTAGCAGTAGCAGCAGCTTCAGTGCAAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCATATCTCGCTCGTTCCGGTCTCTCCGTTGCCGTTCTCGAGAGACGCCACATCATAGGCGGTGCTGCTGTCACTGAAGAACTCATTCCTGGTTTCAAGTTTTCTCGTTGTAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATAAA..................................................................................AGAATTGGAGTTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCTTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCTCAACTATTCTCAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGAGTCAACTTGACAAGTTTTGTGAGTTTCTGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACATCTCAATACTCGTATGAGGCACAAATTGCAAAACTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGCACTCCACTTGGGACAGAAAGACCTAGT......................................................................................................................................................GGACTTGATGGACCTTTTACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321471" ref_strand="+" ref_description="SGN-E321471 [cTOB-23-H1]">
      <seq>agtgttgaagctcggatagattccctattccctgttcaaagagttgctagtgttaaaatcagagattaggcaaaaaaaaaaaagttcaaaaatgtggagacaggtccgaaaatttagcagtaacagcagcttcaatgcgaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcgtatctcgctcgttccggtctctctgttgccgttctcgagaggcgccacatcataggaggtgctgctgtcactgaagaactcattcccggtttcaagttttctcgttgcagttacctacaaagcctccttagaccctgcgttattaaagaattggagctgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcgtcttgacggacgctatcttctgcttggttctgacaaggagcagaactattctgagatttcaaagttttctaaatctgatgctgatgcttactcaaggtatgagagtcaactcgacaagttctgcgagttcatggacccacttctggattcgtctacaccagaaactctacaaggctcttcacaactcaatactcgtatgaagcacaaattgcgtaattcagcgttttgggctaattgtctccgtcgagcactccacttgggacaaaaggacctagtggacttgatgggacttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90227" stop="88193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89927" g_stop="89579" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89335" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="510" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88675" g_stop="88496" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="690" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88495" i_stop="88346" i_length="150">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88345" g_stop="88325" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="711" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E321471" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89927" e_stop="89579"/>
          <exon e_start="89496" e_stop="89335"/>
          <exon e_start="88675" e_stop="88496"/>
          <exon e_start="88345" e_stop="88325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAGGTTCAGTATTTATTTTTATACTGGTCGTTACTTCAACTTTATGTATTCTCTGGCAACTTTGTTTGCTGCAATTTTATTTTAAAAGACAAAGAGGTTAAATAACCATGTTTTTCTACACGAGAATTGAACCTTGAGCAATTCATTTTGTCGAAAAAGCATTTGATTATTTTAAGGCGATTAAATGCAACAGTGCTGAGGTGAACTAGACTATAAGATGGAGATACATAGGTGTACAGCCATTTGTGTGGTGGATTAACTCATATACATCATTGAGAATGCTTCAGTTAAGCTCTGATCATGTCTATGATTGGAAAATAGATACGGCATGTAGCTCGTGTCCATATCACTGGAATCTGGTTCACCTTTCTTCAATACTGAAATTTAATGTGTTCATTGTTCTTGACACTTTCAAGATTGACATACTCAAGATGGAGAACCCAAGGGTTCTTCGCCTGCTAACTTAACGGGAAGAAAAAATAAGTTCCCTGCCAAAAATTTCCAGGCATGGAACTTGATGATAATTTAGCAGAATTTGAGGATTGAGCTCACTTAGCACCCTAAAGTCTGAATGAGAATTCATATATTTCTTTCTGCTCATCATTTTATCTATTACTATCATACTCTAAATTTTTGAGTTACCAAGTGCCACCTAATTGTAGGTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGCACTCCACTTGGGACAAAAGGACCTAGTGTAAGATGTTCTAGATGGTCCTGTTTGCATAATTTCACCAAACCTATTGTTATCAACTGGACATACTAGGGCAACATCTACTCAAATAGTATGAAGTCTCGACTTCAACTGTCATAGTCCATGTTTAATTGTTTCCACTGGACTTTTCAGGGACTTGATGGACCTTTTACT</genome_strand>
        <mrna_strand>AGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGC-AAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAA..................................................................................AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGCACTCCACTTGGGACAAAAGGACCTAGT......................................................................................................................................................GGACTTGATGGGACTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369324" ref_strand="+" ref_description="SGN-E369324 [TUS-25-E14]">
      <seq>tgaagctcggatagattccctattccctgttcaaagagttgctagtgttaaaatcagagattaggcaaaaaaaaaaaaaagttcaaaaatgtggagacaggtccgaaaatttagcagtaacagcagcttcaatgcgaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcgtatctcgctcgttccggtctctctgttgccgttctcgagaggcgccacatcataggaggtgctgctgtcactgaagaactcattcccggtttcaagttttctcgttgcagttacctacaaagcctccttagaccctgcgttattaaagaattggagctgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcgtcttgacggacgctatcttctgcttggttctgacaaggagcagaactattctgagatttcaaagttttctaaatctgatgctgatgcttactcaaggtatgagagtcaactcgacaagttctgcgagttcatggacccacttctggattcgtctacaccagaaactctacaaggctcttcacaactcaatactcgtatgaagcacaaattgcgtaattcagcgttttgggctaattgtctccgtcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90222" stop="88223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89922" g_stop="89579" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89335" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="507" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88675" g_stop="88523" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="660" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E369324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89922" e_stop="89579"/>
          <exon e_start="89496" e_stop="89335"/>
          <exon e_start="88675" e_stop="88523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAA-AAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAGGTTCAGTATTTATTTTTATACTGGTCGTTACTTCAACTTTATGTATTCTCTGGCAACTTTGTTTGCTGCAATTTTATTTTAAAAGACAAAGAGGTTAAATAACCATGTTTTTCTACACGAGAATTGAACCTTGAGCAATTCATTTTGTCGAAAAAGCATTTGATTATTTTAAGGCGATTAAATGCAACAGTGCTGAGGTGAACTAGACTATAAGATGGAGATACATAGGTGTACAGCCATTTGTGTGGTGGATTAACTCATATACATCATTGAGAATGCTTCAGTTAAGCTCTGATCATGTCTATGATTGGAAAATAGATACGGCATGTAGCTCGTGTCCATATCACTGGAATCTGGTTCACCTTTCTTCAATACTGAAATTTAATGTGTTCATTGTTCTTGACACTTTCAAGATTGACATACTCAAGATGGAGAACCCAAGGGTTCTTCGCCTGCTAACTTAACGGGAAGAAAAAATAAGTTCCCTGCCAAAAATTTCCAGGCATGGAACTTGATGATAATTTAGCAGAATTTGAGGATTGAGCTCACTTAGCACCCTAAAGTCTGAATGAGAATTCATATATTTCTTTCTGCTCATCATTTTATCTATTACTATCATACTCTAAATTTTTGAGTTACCAAGTGCCACCTAATTGTAGGTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGC</genome_strand>
        <mrna_strand>TGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAA..................................................................................AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452674" ref_strand="+" ref_description="SGN-E452674 [cSTS-17-H3]">
      <seq>cagtgttgaagctcggatagattccctttccctgttcaaagagttgctattgttaaaatcagtgattaggcaaaaaaaaaaaagttttaaaatgtggagacaattccgaaaatttagcagtagcagcagcagcagcagcttcagtgcaaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcatatctcgctcgttccggtctctccgttgccgttctcgagaggcgacacatcataggcggtgctgctgtcactgaagaactcattcctggtttcaagttttctcgttgtagttacctacaaagcctccttagaccctgcgttataaaagaattggagctgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcttctcgacggacgctatcttctgcttggttctgacaaggagctcaactattctgagatttcaaagttttctaaatctgatgctgatgcttattcaaggtatgagagtcaacttgacaagttttgcgagtttatggacccacttctggattcgtctacaccagaaactctacaaggctcttcacatctcaatactcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90228" stop="88275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89928" g_stop="89579" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89335" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="519" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88675" g_stop="88575" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E452674" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89928" e_stop="89579"/>
          <exon e_start="89496" e_stop="89335"/>
          <exon e_start="88675" e_stop="88575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGT------A--A-CAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAGGTTCAGTATTTATTTTTATACTGGTCGTTACTTCAACTTTATGTATTCTCTGGCAACTTTGTTTGCTGCAATTTTATTTTAAAAGACAAAGAGGTTAAATAACCATGTTTTTCTACACGAGAATTGAACCTTGAGCAATTCATTTTGTCGAAAAAGCATTTGATTATTTTAAGGCGATTAAATGCAACAGTGCTGAGGTGAACTAGACTATAAGATGGAGATACATAGGTGTACAGCCATTTGTGTGGTGGATTAACTCATATACATCATTGAGAATGCTTCAGTTAAGCTCTGATCATGTCTATGATTGGAAAATAGATACGGCATGTAGCTCGTGTCCATATCACTGGAATCTGGTTCACCTTTCTTCAATACTGAAATTTAATGTGTTCATTGTTCTTGACACTTTCAAGATTGACATACTCAAGATGGAGAACCCAAGGGTTCTTCGCCTGCTAACTTAACGGGAAGAAAAAATAAGTTCCCTGCCAAAAATTTCCAGGCATGGAACTTGATGATAATTTAGCAGAATTTGAGGATTGAGCTCACTTAGCACCCTAAAGTCTGAATGAGAATTCATATATTTCTTTCTGCTCATCATTTTATCTATTACTATCATACTCTAAATTTTTGAGTTACCAAGTGCCACCTAATTGTAGGTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTA</genome_strand>
        <mrna_strand>CAGTGTTGAAGCTCGGATAGATTCCCT-TTCCCTGTTCAAAGAGTTGCTATTGTTAAAATCAGTGATTAGGCAAAAAAAAA-AAAGTTTTAAAATGTGGAGACAATTCCGAAAATTTAGCAGTAGCAGCAGCAGCAGCAGCTTCAGTGCAAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCATATCTCGCTCGTTCCGGTCTCTCCGTTGCCGTTCTCGAGAGGCGACACATCATAGGCGGTGCTGCTGTCACTGAAGAACTCATTCCTGGTTTCAAGTTTTCTCGTTGTAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATAAA..................................................................................AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCTTCTCGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCTCAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGAGTCAACTTGACAAGTTTTGCGAGTTTATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACATCTCAATACTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355571" ref_strand="+" ref_description="SGN-E355571 [cLHT-19-G6]">
      <seq>agtgttgaagctcggatagattccctattccctgttcaaagagttctagtgtttaaatcagagattaagcaaaagaagataaagttaaaaatgtggagacaattccgaaaatttagcagtaacagcagcttcaatgcgaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcatatctcgctcgttccggtctctctgttgccgttctcgagaggcgccacatcataggcggtgctgctgtcactgaagagctcattcccggtttcaagttttctcgttgcagttacctacaaagcctccttagaccctgcgttatcaaagaattggagctgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcgtcttgacggacgctatcttctgcttggttctgacaaggagcagaactattctgagatttcaaagctgtctaaatctgatgctgatgcttactcaaggtatgagagtcaactagacaagttctgcgagttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90227" stop="88340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89927" g_stop="89579" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89335" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="509" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88675" g_stop="88640" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="545" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E355571" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89927" e_stop="89579"/>
          <exon e_start="89496" e_stop="89335"/>
          <exon e_start="88675" e_stop="88640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAGGTTCAGTATTTATTTTTATACTGGTCGTTACTTCAACTTTATGTATTCTCTGGCAACTTTGTTTGCTGCAATTTTATTTTAAAAGACAAAGAGGTTAAATAACCATGTTTTTCTACACGAGAATTGAACCTTGAGCAATTCATTTTGTCGAAAAAGCATTTGATTATTTTAAGGCGATTAAATGCAACAGTGCTGAGGTGAACTAGACTATAAGATGGAGATACATAGGTGTACAGCCATTTGTGTGGTGGATTAACTCATATACATCATTGAGAATGCTTCAGTTAAGCTCTGATCATGTCTATGATTGGAAAATAGATACGGCATGTAGCTCGTGTCCATATCACTGGAATCTGGTTCACCTTTCTTCAATACTGAAATTTAATGTGTTCATTGTTCTTGACACTTTCAAGATTGACATACTCAAGATGGAGAACCCAAGGGTTCTTCGCCTGCTAACTTAACGGGAAGAAAAAATAAGTTCCCTGCCAAAAATTTCCAGGCATGGAACTTGATGATAATTTAGCAGAATTTGAGGATTGAGCTCACTTAGCACCCTAAAGTCTGAATGAGAATTCATATATTTCTTTCTGCTCATCATTTTATCTATTACTATCATACTCTAAATTTTTGAGTTACCAAGTGCCACCTAATTGTAGGTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCAT</genome_strand>
        <mrna_strand>AGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTT-CTAGTGTTTAAATCAGAGATTAAGCAAAAGAAGATAAAGTT-AAAAATGTGGAGACAATTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCATATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGCGGTGCTGCTGTCACTGAAGAGCTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATCAA..................................................................................AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGCTGTCTAAATCTGATGCTGATGCTTACTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGAGTCAACTAGACAAGTTCTGCGAGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477100" ref_strand="+" ref_description="SGN-E477100 [cSTB-47-A10]">
      <seq>aaaaggccaagcaagctccaataaactaagcagtagagtgaccagtgttgaagttcgaatagattccctattccctgttcaaagagttgctattgttaaattcagagattaggaaaaaaaaaaagttaaaaaatgtggagacaattccgaaaatttagcagtagcagcagcttcagtgcaaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcatatctcgctcgttccggtctctccgttgccgttctcgagagacgccacatcataggcggtgctgctgtcactgaagaactcattcctggtttcaagttttctcgttgtagttacctacaaagcctccttagaccctgcgttataaaagaattggagttgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcttcttgacggacgctatcttctgcttggttctgacaaggagctcaactattctcagatttcaaagttttctaaatctgatgctgatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90256" stop="89041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90063" g_stop="90059" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90058" i_stop="89968" i_length="91">
            <donor d_prob="0.681" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89967" g_stop="89579" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="389" r_length="384" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89496" g_stop="89341" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="545" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E477100" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90063" e_stop="90059"/>
          <exon e_start="89967" e_stop="89579"/>
          <exon e_start="89496" e_stop="89341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTTTCAAATAAGAGTACTATTTATAATGTACGACTATATATAGAAATATATATATTTCTTTTTATTATTTTAATTTTTTATTTTATACTAGATAAAGGAGGGAAAAGGCCAAGCAAGCTCCCAGAGTAACCAGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTA</genome_strand>
        <mrna_strand>AAAAG...........................................................................................GCCAAGCAAGCTCCA-ATAAACTAAGC-AGTAGAGTGACCAGTGTTGAAGTTCGAATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTATTGTTAAATTCAGAGATTAGG-AAA-AA-AAAAAAGTTAAAAAATGTGGAGACAATTCCGAAAATTTAGCAGTAGCAGCAGCTTCAGTGCAAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCATATCTCGCTCGTTCCGGTCTCTCCGTTGCCGTTCTCGAGAGACGCCACATCATAGGCGGTGCTGCTGTCACTGAAGAACTCATTCCTGGTTTCAAGTTTTCTCGTTGTAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATAAA..................................................................................AGAATTGGAGTTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCTTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCTCAACTATTCTCAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249022" ref_strand="+" ref_description="SGN-E249022 [cLEF-49-A24]">
      <seq>gttgaagctcggatagattccctattccctgttcaaagaggtgctagtgttaaaatcagagattaggcaaaaaaaaaaaaaagttcaaaaatgtggagacaggtccgaaaatttagcagtaacagcagcttcaatgcgaaagagaagaaatgggatgctctgatcatcggcggtggtcacaacggccttacagctgccgcgtatctcgctcgttccggtctctctgttgccgttctcgagaggcgccacatcataggaggtgctgctgtcactgaagaactcattcccggtttcaagttttctcgttgcagttacctacaaagcctccttagaccctgcgttattaaagaattggagctgaagagacatggattgaagctactgaaaaggagtccttcatcattcacgcctcgtcttgacggacgctatcttctgcttggttctgacaaggagcagaactattctgagatttcaaagttttctaaatctgatgctgatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="90224" stop="89041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89924" g_stop="89579" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89496" g_stop="89341" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="503" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E249022" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89924" e_stop="89579"/>
          <exon e_start="89496" e_stop="89341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAA-AAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAAGTGAGACCTAATTATTGCAATGATTTATTGTTAGCATTGATTTATTTTTCTTCAATTATTGAGGATGCGTTATGATTAATAGAGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTA</genome_strand>
        <mrna_strand>GTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGGTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAA..................................................................................AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340238" ref_strand="+" ref_description="SGN-E340238 [cTOF-2-L9]">
      <seq>cggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaagggcaaaggtattatgtacattgatgaagtgataaaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatggttctttcttgggcttggtactttttatgatgctagacaattttcctttaattatctttcctatttgtaatttcctaatgtaattttgttttctgactgctttggtatttttaaaagttagaggagttgaagatcttttaccttggtcacggaagttgctaaacatctcaatgacagtttttgtatcaacttttttcatcctttcaaatgctacaaataagtgatggacggtgttgatgaatttgtggtctttatatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99494" stop="3586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99194" g_stop="99142" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96197" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="663" r_length="610" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96196" i_stop="96121" i_length="76">
            <donor d_prob="0.706" d_score="0.94"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96120" g_stop="96111" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="673" r_length="10" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E340238" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99194" e_stop="99142"/>
          <exon e_start="96806" e_stop="96197"/>
          <exon e_start="96120" e_stop="96111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAGATTGTACTATGCTTCTATAAATATTTTTTGTTAAATTTCATCAGTGTTTTTATAACGTAAAAAAAGTGTGTTAATGTAGTCAGAGAACG</genome_strand>
        <mrna_strand>CGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAAAAA............................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341031" ref_strand="+" ref_description="SGN-E341031 [cTOF-5-N18]">
      <seq>cttctcttaggcccaacttttttaatttcttgtgttgacgaacagagccctcggaaagctccactgaccggtgaactgcggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaagggcaaaggtattatgtacattgatgaagtgataaaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatggttctttcttgggcttggtactttttatgatgctagacaattttcctttaattatctttcctatttgtaatttcctaatgtaattttgttttctgactgctttggtatttttaaaagttagaggagtttgaagatcttttaccttggtcacgggaagttgctaaacatctcaatgacagttttttgtatcaacttttttcatcctttcaaatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99572" stop="95948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99272" g_stop="99142" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96248" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="693" r_length="562" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E341031" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99272" e_stop="99142"/>
          <exon e_start="96806" e_stop="96248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAG-TTGAAGATCTTTTACCTTGGTCAC-GGAAGTTGCTAAACATCTCAATGACAG-TTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTA</genome_strand>
        <mrna_strand>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTTGAAGATCTTTTACCTTGGTCACGGGAAGTTGCTAAACATCTCAATGACAGTTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292609" ref_strand="+" ref_description="SGN-E292609 [cLET-16-P16]">
      <seq>gcggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaagggcaaaggtattatgtacattgatgaagtgataaaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatggttctttcttgggcttggtactttttatgatgctagacaattttcctttaattatctttcctatttgtaatttcctaatgtaattttgttttctgactgctttggtatttttaaaagttagaggagttgaagatcttttaccttggtcacggaagttgctaaacatctcaatgacagtttttgtatcaacttttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99495" stop="95963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99195" g_stop="99142" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96263" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="598" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E292609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99195" e_stop="99142"/>
          <exon e_start="96806" e_stop="96263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCA</genome_strand>
        <mrna_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265615" ref_strand="+" ref_description="SGN-E265615 [cLEI-14-O12]">
      <seq>gcggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaagggcaaaggtattatgtacattgatgaagtgataaaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatggttctttcttgggcttggtactttttatgatgctagacaattttcctttaattatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99495" stop="96102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99195" g_stop="99142" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96402" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="459" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E265615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99195" e_stop="99142"/>
          <exon e_start="96806" e_stop="96402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTT</genome_strand>
        <mrna_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294937" ref_strand="+" ref_description="SGN-E294937 [cLET-17-B13]">
      <seq>gcggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaaaggcaaaggtattatgtacattgatgaagtggataaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99495" stop="96161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99195" g_stop="99142" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96461" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="400" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E294937" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99195" e_stop="99142"/>
          <exon e_start="96806" e_stop="96461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATG</genome_strand>
        <mrna_strand>GCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAAGGCAAAGGTATTATGTACATTGATGAAGTGGATAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340224" ref_strand="+" ref_description="SGN-E340224 [cTOF-2-H9]">
      <seq>cggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggctttttcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctgctgaagtttacaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99494" stop="96238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99194" g_stop="99142" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96538" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="322" r_length="269" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E340224" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99194" e_stop="99142"/>
          <exon e_start="96806" e_stop="96538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGG</genome_strand>
        <mrna_strand>CGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCTTTTTCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTGCTGAAGTTTACAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209080" ref_strand="+" ref_description="SGN-E209080 [cLEC-38-P18]">
      <seq>ttttttaatttcttgtgttgacgaacagagccctcggaaagctccactgaccggtgaactgcggatctccggcggtttttaggtttgctgaggtagcgatacaaagaaagcctgctgattgataaaagtcatccaatggaagctaaattctttcgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99555" stop="96257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99255" g_stop="99142" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96557" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="364" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E209080" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99255" e_stop="99142"/>
          <exon e_start="96806" e_stop="96557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAAC</genome_strand>
        <mrna_strand>TTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAAAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTTCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540772" ref_strand="+" ref_description="SGN-E540772 [TUS-61-D14](-)">
      <seq>ggaaagataatgcagaggaattagtgatagctctagcagaggcaaaggcagatgctattatgtcaaggctcaaaacaactgatcagttggacgaaaatacccattccactctgttaattactgcagatacagtggcggtttacgaaggaattgttagagaaaaaccatcaagcaaggaagaagcgcgtcagttcatcaaaagttattctggtggtcaagccacagttgtaggatctgttgttgtgcccacccttacaaaggggataagaaaaggagcttgggaaaggtccgaggtatatttccatgacatccctgatgagattattgacagcctgattgaggagggaataatacttaatgttgctgggggcttaatgcttgaacatccattgacgctgccctttgttgacactttgattggaactgctgacagtgttatgggactcccaagaaatctcactgaaaaacttatcgaagaagccctctagctgctggaattccccaagggaataaatatcctttcgatcacctctcctgaaatgtacttgattactagatttttgagtttataaacttgtctttctgaagtgaacattggaaacatgcacgaaaggaaatactggctgaaagacattttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="104569" stop="90789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104269" g_stop="104223" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103450" g_stop="103367" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="131" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102821" g_stop="102752" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="201" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102751" i_stop="102648" i_length="104">
            <donor d_prob="0.154" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102647" g_stop="102556" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="293" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102555" i_stop="101107" i_length="1449">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101106" g_stop="101065" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101064" i_stop="100993" i_length="72">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100992" g_stop="100912" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="416" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98">
            <donor d_prob="0.704" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100813" g_stop="100587" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="643" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100586" i_stop="99411" i_length="1176">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99410" g_stop="99362" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="692" r_length="49" r_score="0.755"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E540772" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104269" e_stop="104223"/>
          <exon e_start="103450" e_stop="103367"/>
          <exon e_start="102821" e_stop="102752"/>
          <exon e_start="102647" e_stop="102556"/>
          <exon e_start="101106" e_stop="101065"/>
          <exon e_start="100992" e_stop="100912"/>
          <exon e_start="100813" e_stop="100587"/>
          <exon e_start="99410" e_stop="99362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAGGTATACTACCTCTTCTCTATTACCGGTGTGTTTGGTTATATGGTTGATAAAAATGTTCTCAAAAATATTTTTTCTAGAAAAACGATTATTTAAGTTAATTGTCTCCTCCCACCACCTAATGCCCCTACTCCACACCCTCATACTAAGTAAGAAATCCACTTGTTTCCTGATGACGTTTTTTTTGTCTTCGAGTTCATTTCACTGGTGAAGTAATTGGTAGAAGTTCACCATTTAGGTTTGAAACTATAATCAATTTTTTTTGTCCAAGTAACATGAAACAAAGATCTTCGTAGTGTATGTTATTCTTCTAAGTAACACATATCGCCCTATAAAAGTAAAAAGGCCAGGAGTAATTTTAGTGCAGTTATTAGAGGAGTTCTGTTGATAATTGTGTAGAACATGATATCAATAAGAAGGTCAAAATTCAATATTCTTGTGATTGGATGAGATTTATTATTTTGGCATTCCCTTGGCATCTTTTGTGTTCCGACTAACTTCCAATCATTCTGCCCATCAGTGATTTATGTTATGGAATTTCCATTTGATGGTTAGGGACTATCTATTAATGGGTACTTCTCTTCCGCTGATAATGGGCTGATTCTGGATAGTTCGTCTCACTATAATCAACTCACTTGCTTTCCTTCCATTTCCATGACACTCTAGTTGTGCCGTATAAATCAAGACGGAGGGAGTAATATGTATTACAGTTATATCATGTTCCAGTGCTCAAAGAGCAAATCTTATGTTTACTTACTGGTTCTGTTCTTCTTAGGCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACAGTATGTTTACTTTTCTTCATTAGAATATTTCAAGTGCTATAGCCTTGATTAGTTTAATACTAAGCCCATATTCACAGGTATTTCTCTGATTGAATGGAGAGCTTATCAGAAACCATTAAATGATTGTTTTTCATTTATTGCAAAACTAGTTGGTGATATAGGCACATTTAGCTATAATTATAAAACAGCAGTACAATATTTTAGCTAGTAACGTTGCATAGAGAAGTTTGGAGAAAGTGTTGAAATTAGCTTGCTGTTAGTTTCTTTTTATTAGACAAATAATGCAAGCAGCTGGCCTATCTTGTATGACATTTTAGATTGACATTTATTGTGTCGTTAGCTCATTTCTAATCTTTTGTTTTGCTCTCTAAATTCATTCGAAATTTGATTCTCCTCACTTGCTCCATGATTTGACAATCTTAATTTAATATCACTGTTAAATAGCATATTGCAAAATTAGAATACTTGAGCCTTCTAATGATTTTTCTCTTGGATGAAGAATAGATCTTTTTGGCTATATCTTACCTACATCTATTGGTATTGAGGTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTTCCTCCAGTATCTCAGCTAAGCAGGTTATTCTTTTTCTTTTCTACCAATATTACTGTTCTTGTTATTATGAATTGCAGGTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAGGTATATCTTTTACTCCATATGAAGTAATTCCTACATGATGGAGACTATTGAAATACAACTATGCATTTATATAGTACATTTTTACTTAAGTTGATATGTTCCAATGGTGAATAGGCTTAAAAACATCTGATGCATAAGTGTATGTGATGTGGTGGTGAGGATTAAGGTGATGTGACATTTCGAAGATATGTCAGGTATCTGATAATAGATATTTGAATAAGTATATGCTTATCCCGGCCTGTGACTTTGAGCTTATTTGATCCCCATCCTTACAAATGATTTTTTTTTTCAGAAACTAGAAGGATTATTTTATAGTTATATTCACCGTGTGCGAGACTTTAAATAAAGAGAACGTACATTCTTTGCTAAATTAGACTGCAACAAGGAAGAGCTCAATTGCCTGATTTTACCAACTTTCCTTATGCCAATATGAATAACCATAGTTTACAAGTGGAGTTCTTGCAGAAAAATTCCTTTCCGGTTTCTATTTGTGAATTGTGACATTAATTTCATCCTTGAAATTCGGCATAGGTCTTTGAATGTTGGGATCATTAGAATACATGAATTACTGGGTCTCTGGTATAATATTGGAGCCTCAAAATTACCGGTAATTGATGTGACTGTTGTAGGCTTATTCATAAGTCTATGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGGAATCTGGTTCATTACAGCCCATCAACATTACTCTCTCCAGTCTCCACCCATGAATTTGTTTCCCAAGACTTCTTTTTACTGACCATACCAGTTTGTAAGGATGTCGAGAATGCTTCCCCTTTTATCTGCTTATCAGAACACCAATACAATTGCCTCACAGCTCTCAGTTTATTAGTTAGCTTGTCTGATCTTCTCTAAGCCCTCCTTTTGTTACTATTATGAATTTGTTCTTTCTTGATGGTGTGGTGCAACATGATTTTCTCGGAAACCTTCTTGCTGACTTAACTATTAGTGCAATGGTGTAATATGGAGTATTACACAATTATACAACTGTGATTGTTTAACATGGAGTAAATTGTTCTTCTGCCTAATTGCAGGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTGGTAAATATGACTCTGTTCTTAAATAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTACATTTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTGGTTCGTCTCCCTCTCTCTCTCTCTCACCCTCTCTTTGAAGCTTGGAACTGCCGATTACTGACCTGTTGTTTATACTGTTACTTCCCAATACTTTGTAGATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAAAGACATTCTTCTTTCATTATCACTGTTAAATTATTTGATTTGATGTAAACATCGTGATCAGGAAAGATTTTGATACTCTTACAACTTGGAAATTGATTCAATAAGGTAAATATTCTGCACAAGAAAACATTTTTATGAGAGATACTTCTCTTTGTACGGAATGTAAGCTAGTGTTCGGTATCGCAAAAGTTTTCCTGATGAAATTGTTTTCAGTGTTTGTTTATCTTGAATTTCGAAATATATTTCCTCCAAGAAAAATATTCTCCACCAAAGTGAAAAAGACTAGTTCACTTATAGAATGAAATATTCTTCTTATATAGACGAACATATATATGGTAAAAATTTTAATCAGTAGAAAGTGGGGAACTTTTTTCAACTTCCTTTTTGTTTCTTTTTTCCATGGTAATATTCCTATCTTCGCGAGGTACAATAATGTGTGTATACTTTATTTTACTCGTATCCAACTTGTAGAATTATACTGAATATATTGTTGATATTGATTGGGACTGCAGGTCATTTTAATAATATCCCATAATTGAAAGAGACTAACTATGATATTAAGAAGGGCAAATATGTTAAATCATGTAGAATAAAATAAAAATTAAAAAGGTAGACAGAATACCATAAATCACAAGAGAGATCATGGCCTGAAACCAGAGATAAGTCTCTAAATTACTAAAATAAAATACTTTGAAACGGTTATAACCTCCTCCATTATGAAGACAATCATAATCTCCAATTTCATAATCATTACTCTTGTAACATTTCACTTTCATAACCTCCCCCATTATATTCATGTTAATGTCATGTTTATGATTAAACTTTTGTATGTCTCTATGCTACACTATAAATAGAGGCACAAGAGTTCATATTGTATACACTTGAAAGTTTGGTGAATGCTTGAATAAGAAAAACTCTCATATCTTGTCTCCCTATTTCTATTGCTATCATTTTTTTTATATTTCTCGTCTTATTTTGCTTTAGTTTTTACAAGAGAAACTTTTTTGTGATTTTTTTTTGGTTTCCGTAGCAATATATAGTACCCACAAATACTGCTCCCTTCATTTAATTACTTGTCTTATTTAATTTGATATAAAATTTTGAAAAATAAATAATATTTTAAATTTTAAAGTTTTGAATTAAGAGTATGTCTAAATATACTATGTTGTTAAAGTGTCATGTTTAAAAAAAAAATTAAAAAATTAAAAAAAAGAAGAAAAGAATAATCATTAAAAGAAAA</genome_strand>
        <mrna_strand>GGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAA........................................................................................................GTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGCCCACCCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTCCATGACATCCCTGATGAGATTATTGACAGCCTG........................................................................ATTGAGGAGGGAATAATACTTAATGTTGCTGGGGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTTTG..................................................................................................ATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCCCAAGGGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAAAGACATTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467801" ref_strand="-" ref_description="SGN-E467801 [cSTB-1-P19]">
      <seq>ggtatatttccatgacatacctgatgagatcattgacagcctggtaaattttgacagtgtccttaagtaggggatgttctttacctgcaacattaactattagtgcaattgtatagattgaggagggaataatacttaatgttgctggtggcttaatgcttgagcatccattgacgttgcccttcgttgacactctgattggaactgctgacagtgtcatgggactcccaagaagtctcactgaaaaacttatcgaagaaacactctagctgctggaattccacaaatgaatatcctttcattcacctctcctgaaatgtagttgattactctcactagatttttgagtttataaacttgtctttctgaagtgaacatttgaaacatgccaaaaggaaatagctgaaagacactcttctttcaaatatcactgttgaattatttgatttgatgtaaacatcgtgatcaggaacgatttgatactcatacaacttggaaattgattcaataaggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="101407" stop="100190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101107" g_stop="100912" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98">
            <donor d_prob="0.704" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100813" g_stop="100497" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="512" r_length="315" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E467801" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467801" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101107" e_stop="100912"/>
          <exon e_start="100813" e_stop="100497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTGGTAAA-TATGACTCTGTTCTTAAATAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTACATTTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTGGTTCGTCTCCCTCTCTCTCTCTCTCACCCTCTCTTTGAAGCTTGGAACTGCCGATTACTGACCTGTTGTTTATACTGTTACTTCCCAATACTTTGTAGATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTG---A-T-T-ACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAAAGACATTCTTCTTTC-ATTATCACTGTTAAATTATTTGATTTGATGTAAACATCGTGATCAGGAAAGATTTTGATACTCTTACAACTTGGAAATTGATTCAATAAG</genome_strand>
        <mrna_strand>GGTATATTTCCATGACATACCTGATGAGATCATTGACAGCCTGGTAAATTTTGACAGTGTCCTTAAGTAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTGCAATTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAGCATCCATTGACGTTGCCCTTCGTTGACACTCTG..................................................................................................ATTGGAACTGCTGACAGTGTCATGGGACTCCCAAGAAGTCTCACTGAAAAACTTATCGAAGAAACACTCTAGCTGCTGGAATTCCAC-A---AATGAATATCCTTTCATTCACCTCTCCTGAAATGTAGTTGATTACTCTCACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTTGAAACATGC-CAAAAGGAAATA---GCTGAAAGACACTCTTCTTTCAAATATCACTGTTGAATTATTTGATTTGATGTAAACATCGTGATCAGGAACGA-TTTGATACTCATACAACTTGGAAATTGATTCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540774" ref_strand="+" ref_description="SGN-E540774 [TUS-61-D14]">
      <seq>gaagaagaggtgagaaagagagcgccaaacaaatggctccgaagaacttgtcgttcaagataatcttgggttcttcctcaatggcacgtcgcaaaatattagcggacatgggttatgaatttacagtaatgggtgctgacattgatgaaaagagcattaggaaagataatgcagaggaattagtgatagctctagcagaggcaaaggcagatgctattatgtcaaggctcaaaacaactgatcagttggacgaaaatacccattccactctgttaattactgcagatacagtggcggtttacgaaggaattgttagagaaaaaccatcaagcaaggaagaagcgcgtcagttcatcaaaagttattctggtggtcaagccacagttgtaggatctgttgttgtgaccaaccttacaaaggggataagaaaaggagcttgggaaaggtccgaggtatatttccatgacatacctgatgagattattgacagcctgattgaggagggaataatacttaatgttgctggtggcttaatgcttgaacatccattgacgctgccctttgttgacactctgattggaactgctgacagtgttatgggactcccaagaaatctcactgaaaaacttatcgaagaagccctctagctgctggaattccacaagtgaataaatatcctttcgatcacctctcctngaatgtacttgattactagatttttgagtttataaacttgtctttctgaagtgaacattggaaacatgcacgaaaaggaatactggctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="105156" stop="100302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104856" g_stop="104798" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104662" g_stop="104591" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="131" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104297" g_stop="104223" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="206" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103450" g_stop="103367" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="290" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102821" g_stop="102752" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="360" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102751" i_stop="102648" i_length="104">
            <donor d_prob="0.154" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102647" g_stop="102556" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="452" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102555" i_stop="101107" i_length="1449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101106" g_stop="101065" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="494" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101064" i_stop="100993" i_length="72">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100992" g_stop="100912" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="575" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100813" g_stop="100602" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="787" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E540774" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104856" e_stop="104798"/>
          <exon e_start="104662" e_stop="104591"/>
          <exon e_start="104297" e_stop="104223"/>
          <exon e_start="103450" e_stop="103367"/>
          <exon e_start="102821" e_stop="102752"/>
          <exon e_start="102647" e_stop="102556"/>
          <exon e_start="101106" e_stop="101065"/>
          <exon e_start="100992" e_stop="100912"/>
          <exon e_start="100813" e_stop="100602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAGGTTTGCTTTTTCACCCACTCATGAACTGTTCTCCTTTATCTCAAATCTTTCTTTTAAGGATTAAAACGGAAGTTAATGTTTTCTTTAATATACTGAATGTACATGTAAATCACTAATGGTTCTATATGTTTAAAGATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATGGTACGTTCAATTTTGTTTTAAAAGATTCTGTATTTTGCTAAAACTTGCACTGTCTGTCCAGATTAAGTTTTGGACCTGCTCGGGCTCGTTTGGCGTGAGAGATTAAAAATAAAATAGTGATGAGATAAGGAATGGTGATGGATAAACTTATTCCACTATTTATATCATAGTGAATACATACTAGGATAAGTTATCCCACAATAGCTAACTCATGAGATAACTTATTTCCAATTAAACGAGCTCTTAGTTTTCTAGTGTATTGCGACTTATATTTTAATTTTTTTTTGGAGTAGGGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAGGTATACTACCTCTTCTCTATTACCGGTGTGTTTGGTTATATGGTTGATAAAAATGTTCTCAAAAATATTTTTTCTAGAAAAACGATTATTTAAGTTAATTGTCTCCTCCCACCACCTAATGCCCCTACTCCACACCCTCATACTAAGTAAGAAATCCACTTGTTTCCTGATGACGTTTTTTTTGTCTTCGAGTTCATTTCACTGGTGAAGTAATTGGTAGAAGTTCACCATTTAGGTTTGAAACTATAATCAATTTTTTTTGTCCAAGTAACATGAAACAAAGATCTTCGTAGTGTATGTTATTCTTCTAAGTAACACATATCGCCCTATAAAAGTAAAAAGGCCAGGAGTAATTTTAGTGCAGTTATTAGAGGAGTTCTGTTGATAATTGTGTAGAACATGATATCAATAAGAAGGTCAAAATTCAATATTCTTGTGATTGGATGAGATTTATTATTTTGGCATTCCCTTGGCATCTTTTGTGTTCCGACTAACTTCCAATCATTCTGCCCATCAGTGATTTATGTTATGGAATTTCCATTTGATGGTTAGGGACTATCTATTAATGGGTACTTCTCTTCCGCTGATAATGGGCTGATTCTGGATAGTTCGTCTCACTATAATCAACTCACTTGCTTTCCTTCCATTTCCATGACACTCTAGTTGTGCCGTATAAATCAAGACGGAGGGAGTAATATGTATTACAGTTATATCATGTTCCAGTGCTCAAAGAGCAAATCTTATGTTTACTTACTGGTTCTGTTCTTCTTAGGCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACAGTATGTTTACTTTTCTTCATTAGAATATTTCAAGTGCTATAGCCTTGATTAGTTTAATACTAAGCCCATATTCACAGGTATTTCTCTGATTGAATGGAGAGCTTATCAGAAACCATTAAATGATTGTTTTTCATTTATTGCAAAACTAGTTGGTGATATAGGCACATTTAGCTATAATTATAAAACAGCAGTACAATATTTTAGCTAGTAACGTTGCATAGAGAAGTTTGGAGAAAGTGTTGAAATTAGCTTGCTGTTAGTTTCTTTTTATTAGACAAATAATGCAAGCAGCTGGCCTATCTTGTATGACATTTTAGATTGACATTTATTGTGTCGTTAGCTCATTTCTAATCTTTTGTTTTGCTCTCTAAATTCATTCGAAATTTGATTCTCCTCACTTGCTCCATGATTTGACAATCTTAATTTAATATCACTGTTAAATAGCATATTGCAAAATTAGAATACTTGAGCCTTCTAATGATTTTTCTCTTGGATGAAGAATAGATCTTTTTGGCTATATCTTACCTACATCTATTGGTATTGAGGTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTTCCTCCAGTATCTCAGCTAAGCAGGTTATTCTTTTTCTTTTCTACCAATATTACTGTTCTTGTTATTATGAATTGCAGGTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAGGTATATCTTTTACTCCATATGAAGTAATTCCTACATGATGGAGACTATTGAAATACAACTATGCATTTATATAGTACATTTTTACTTAAGTTGATATGTTCCAATGGTGAATAGGCTTAAAAACATCTGATGCATAAGTGTATGTGATGTGGTGGTGAGGATTAAGGTGATGTGACATTTCGAAGATATGTCAGGTATCTGATAATAGATATTTGAATAAGTATATGCTTATCCCGGCCTGTGACTTTGAGCTTATTTGATCCCCATCCTTACAAATGATTTTTTTTTTCAGAAACTAGAAGGATTATTTTATAGTTATATTCACCGTGTGCGAGACTTTAAATAAAGAGAACGTACATTCTTTGCTAAATTAGACTGCAACAAGGAAGAGCTCAATTGCCTGATTTTACCAACTTTCCTTATGCCAATATGAATAACCATAGTTTACAAGTGGAGTTCTTGCAGAAAAATTCCTTTCCGGTTTCTATTTGTGAATTGTGACATTAATTTCATCCTTGAAATTCGGCATAGGTCTTTGAATGTTGGGATCATTAGAATACATGAATTACTGGGTCTCTGGTATAATATTGGAGCCTCAAAATTACCGGTAATTGATGTGACTGTTGTAGGCTTATTCATAAGTCTATGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGGAATCTGGTTCATTACAGCCCATCAACATTACTCTCTCCAGTCTCCACCCATGAATTTGTTTCCCAAGACTTCTTTTTACTGACCATACCAGTTTGTAAGGATGTCGAGAATGCTTCCCCTTTTATCTGCTTATCAGAACACCAATACAATTGCCTCACAGCTCTCAGTTTATTAGTTAGCTTGTCTGATCTTCTCTAAGCCCTCCTTTTGTTACTATTATGAATTTGTTCTTTCTTGATGGTGTGGTGCAACATGATTTTCTCGGAAACCTTCTTGCTGACTTAACTATTAGTGCAATGGTGTAATATGGAGTATTACACAATTATACAACTGTGATTGTTTAACATGGAGTAAATTGTTCTTCTGCCTAATTGCAGGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTGGTAAATATGACTCTGTTCTTAAATAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTACATTTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTGGTTCGTCTCCCTCTCTCTCTCTCTCACCCTCTCTTTGAAGCTTGGAACTGCCGATTACTGACCTGTTGTTTATACTGTTACTTCCCAATACTTTGTAGATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAA</genome_strand>
        <mrna_strand>GAAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAG.......................................................................................................................................ATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATG.....................................................................................................................................................................................................................................................................................................GGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAA........................................................................................................GTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTG........................................................................ATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTG..................................................................................................ATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTNGAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAAGGAATACTGGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345116" ref_strand="+" ref_description="SGN-E345116 [cTOF-22-J17]">
      <seq>ttatctccaaagctaaccgttgccctttgaagaagaggtgagaaagagagcgccaaacaaatggctccgaagaacttgtcgttcaagataatcttgggttcttcctcaatggcacgtcgcaaaatattagcggacatgggttatgaatttacagtaatgggtgctgacattgatgaaaagagcattaggaaagataatgcagaggaattagtgatagctctagcagaggcaaaggcagatgctattatgtcaaggctcaaaacaactgatcagttggacgaaaatacccattccactctgttaattactgcagatacagtggcggtttacgaaggaattgttagagaaaaaccatcaagcaaggaagaagcgcgtcagttcatcaaaagttattctggtggtcaagccacagttgtaggatctgttgttgtgaccaaccttacaaaggggataagaaaaggagcttgggaaaggtccgaggtatatttccatgacatacctgatgagattattgacagcctgattgaggagggaataatacttaatgttgctggtggcttaatgcttgaacatccattgacgctgccctttgttgacactctgattggaactgctgacagtgttatgggactcccaagaaatctcactgaaaaacttatcgaagaagccctctagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="105184" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104884" g_stop="104798" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104662" g_stop="104591" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="159" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104297" g_stop="104223" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103450" g_stop="103367" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="318" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102821" g_stop="102752" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="388" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102751" i_stop="102648" i_length="104">
            <donor d_prob="0.154" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102647" g_stop="102556" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="480" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102555" i_stop="101107" i_length="1449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101106" g_stop="101065" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="522" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101064" i_stop="100993" i_length="72">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100992" g_stop="100912" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100813" g_stop="100738" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="679" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E345116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104884" e_stop="104798"/>
          <exon e_start="104662" e_stop="104591"/>
          <exon e_start="104297" e_stop="104223"/>
          <exon e_start="103450" e_stop="103367"/>
          <exon e_start="102821" e_stop="102752"/>
          <exon e_start="102647" e_stop="102556"/>
          <exon e_start="101106" e_stop="101065"/>
          <exon e_start="100992" e_stop="100912"/>
          <exon e_start="100813" e_stop="100738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCCAAAGCTAACCGTTGCCCTTTGAAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAGGTTTGCTTTTTCACCCACTCATGAACTGTTCTCCTTTATCTCAAATCTTTCTTTTAAGGATTAAAACGGAAGTTAATGTTTTCTTTAATATACTGAATGTACATGTAAATCACTAATGGTTCTATATGTTTAAAGATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATGGTACGTTCAATTTTGTTTTAAAAGATTCTGTATTTTGCTAAAACTTGCACTGTCTGTCCAGATTAAGTTTTGGACCTGCTCGGGCTCGTTTGGCGTGAGAGATTAAAAATAAAATAGTGATGAGATAAGGAATGGTGATGGATAAACTTATTCCACTATTTATATCATAGTGAATACATACTAGGATAAGTTATCCCACAATAGCTAACTCATGAGATAACTTATTTCCAATTAAACGAGCTCTTAGTTTTCTAGTGTATTGCGACTTATATTTTAATTTTTTTTTGGAGTAGGGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAGGTATACTACCTCTTCTCTATTACCGGTGTGTTTGGTTATATGGTTGATAAAAATGTTCTCAAAAATATTTTTTCTAGAAAAACGATTATTTAAGTTAATTGTCTCCTCCCACCACCTAATGCCCCTACTCCACACCCTCATACTAAGTAAGAAATCCACTTGTTTCCTGATGACGTTTTTTTTGTCTTCGAGTTCATTTCACTGGTGAAGTAATTGGTAGAAGTTCACCATTTAGGTTTGAAACTATAATCAATTTTTTTTGTCCAAGTAACATGAAACAAAGATCTTCGTAGTGTATGTTATTCTTCTAAGTAACACATATCGCCCTATAAAAGTAAAAAGGCCAGGAGTAATTTTAGTGCAGTTATTAGAGGAGTTCTGTTGATAATTGTGTAGAACATGATATCAATAAGAAGGTCAAAATTCAATATTCTTGTGATTGGATGAGATTTATTATTTTGGCATTCCCTTGGCATCTTTTGTGTTCCGACTAACTTCCAATCATTCTGCCCATCAGTGATTTATGTTATGGAATTTCCATTTGATGGTTAGGGACTATCTATTAATGGGTACTTCTCTTCCGCTGATAATGGGCTGATTCTGGATAGTTCGTCTCACTATAATCAACTCACTTGCTTTCCTTCCATTTCCATGACACTCTAGTTGTGCCGTATAAATCAAGACGGAGGGAGTAATATGTATTACAGTTATATCATGTTCCAGTGCTCAAAGAGCAAATCTTATGTTTACTTACTGGTTCTGTTCTTCTTAGGCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACAGTATGTTTACTTTTCTTCATTAGAATATTTCAAGTGCTATAGCCTTGATTAGTTTAATACTAAGCCCATATTCACAGGTATTTCTCTGATTGAATGGAGAGCTTATCAGAAACCATTAAATGATTGTTTTTCATTTATTGCAAAACTAGTTGGTGATATAGGCACATTTAGCTATAATTATAAAACAGCAGTACAATATTTTAGCTAGTAACGTTGCATAGAGAAGTTTGGAGAAAGTGTTGAAATTAGCTTGCTGTTAGTTTCTTTTTATTAGACAAATAATGCAAGCAGCTGGCCTATCTTGTATGACATTTTAGATTGACATTTATTGTGTCGTTAGCTCATTTCTAATCTTTTGTTTTGCTCTCTAAATTCATTCGAAATTTGATTCTCCTCACTTGCTCCATGATTTGACAATCTTAATTTAATATCACTGTTAAATAGCATATTGCAAAATTAGAATACTTGAGCCTTCTAATGATTTTTCTCTTGGATGAAGAATAGATCTTTTTGGCTATATCTTACCTACATCTATTGGTATTGAGGTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTTCCTCCAGTATCTCAGCTAAGCAGGTTATTCTTTTTCTTTTCTACCAATATTACTGTTCTTGTTATTATGAATTGCAGGTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAGGTATATCTTTTACTCCATATGAAGTAATTCCTACATGATGGAGACTATTGAAATACAACTATGCATTTATATAGTACATTTTTACTTAAGTTGATATGTTCCAATGGTGAATAGGCTTAAAAACATCTGATGCATAAGTGTATGTGATGTGGTGGTGAGGATTAAGGTGATGTGACATTTCGAAGATATGTCAGGTATCTGATAATAGATATTTGAATAAGTATATGCTTATCCCGGCCTGTGACTTTGAGCTTATTTGATCCCCATCCTTACAAATGATTTTTTTTTTCAGAAACTAGAAGGATTATTTTATAGTTATATTCACCGTGTGCGAGACTTTAAATAAAGAGAACGTACATTCTTTGCTAAATTAGACTGCAACAAGGAAGAGCTCAATTGCCTGATTTTACCAACTTTCCTTATGCCAATATGAATAACCATAGTTTACAAGTGGAGTTCTTGCAGAAAAATTCCTTTCCGGTTTCTATTTGTGAATTGTGACATTAATTTCATCCTTGAAATTCGGCATAGGTCTTTGAATGTTGGGATCATTAGAATACATGAATTACTGGGTCTCTGGTATAATATTGGAGCCTCAAAATTACCGGTAATTGATGTGACTGTTGTAGGCTTATTCATAAGTCTATGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGGAATCTGGTTCATTACAGCCCATCAACATTACTCTCTCCAGTCTCCACCCATGAATTTGTTTCCCAAGACTTCTTTTTACTGACCATACCAGTTTGTAAGGATGTCGAGAATGCTTCCCCTTTTATCTGCTTATCAGAACACCAATACAATTGCCTCACAGCTCTCAGTTTATTAGTTAGCTTGTCTGATCTTCTCTAAGCCCTCCTTTTGTTACTATTATGAATTTGTTCTTTCTTGATGGTGTGGTGCAACATGATTTTCTCGGAAACCTTCTTGCTGACTTAACTATTAGTGCAATGGTGTAATATGGAGTATTACACAATTATACAACTGTGATTGTTTAACATGGAGTAAATTGTTCTTCTGCCTAATTGCAGGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTGGTAAATATGACTCTGTTCTTAAATAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTACATTTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTGGTTCGTCTCCCTCTCTCTCTCTCTCACCCTCTCTTTGAAGCTTGGAACTGCCGATTACTGACCTGTTGTTTATACTGTTACTTCCCAATACTTTGTAGATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGC</genome_strand>
        <mrna_strand>TTATCTCCAAAGCTAACCGTTGCCCTTTGAAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAG.......................................................................................................................................ATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATG.....................................................................................................................................................................................................................................................................................................GGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAA........................................................................................................GTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTG........................................................................ATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTG..................................................................................................ATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291804" ref_strand="+" ref_description="SGN-E291804 [cLET-7-M3]">
      <seq>aagaagaggtgagaaagagagcgccaaacaaatggctccgaagaacttgtcgttcaagataatcttgggttcttcctcaatggcacgtcgcaaaatattagcggacatgggttatgaatttacagtaatgggtgctgacattgatgaaaagaagcaatttttttaaagcgaaagataatgcagaggaattagtgatagctctagcagaggcaaaggcagatgctattatgtcaaggctcaaaacaactgatcagttggacgaaaatacccattccactctgttaattactgcagatacaatggcggtccacgaaggaattgttagagaaaaaccatcaagcaaggaagaagcgcgtcagttcatcaaaagttattctggtggtcaagccacagttgtaggatctgttgttgtgaccaaccttacaaaggggataagaaaaggagcttgggaaaggtccgaggtatatttccatgacatacctgatgagattattgacagcctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="105155" stop="100763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104855" g_stop="104798" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104662" g_stop="104591" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104297" g_stop="104223" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="215" r_length="85" r_score="0.733"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103450" g_stop="103367" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="299" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102821" g_stop="102752" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="369" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102751" i_stop="102648" i_length="104">
            <donor d_prob="0.154" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102647" g_stop="102556" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="461" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102555" i_stop="101107" i_length="1449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101106" g_stop="101065" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="503" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E291804" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104855" e_stop="104798"/>
          <exon e_start="104662" e_stop="104591"/>
          <exon e_start="104297" e_stop="104223"/>
          <exon e_start="103450" e_stop="103367"/>
          <exon e_start="102821" e_stop="102752"/>
          <exon e_start="102647" e_stop="102556"/>
          <exon e_start="101106" e_stop="101065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAGGTTTGCTTTTTCACCCACTCATGAACTGTTCTCCTTTATCTCAAATCTTTCTTTTAAGGATTAAAACGGAAGTTAATGTTTTCTTTAATATACTGAATGTACATGTAAATCACTAATGGTTCTATATGTTTAAAGATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATGGTACGTTCAATTTTGTTTTAAAAGATTCTGTATTTTGCTAAAACTTGCACTGTCTGTCCAGATTAAGTTTTGGACCTGCTCGGGCTCGTTTGGCGTGAGAGATTAAAAATAAAATAGTGATGAGATAAGGAATGGTGATGGATAAACTTATTCCACTATTTATATCATAGTGAATACATACTAGGATAAGTTATCCCACAATAGCTAACTCATGAGATAACTTATTTCCAATTAAACGAGCTCTTAGTTTTCTAGTGTATTGCGACTTATATTTTAATTTTTTTTTGGAGTAGGGTGCTGACATTGATGAAAAG-AGC-A-----TT--AG-GAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAGGTATACTACCTCTTCTCTATTACCGGTGTGTTTGGTTATATGGTTGATAAAAATGTTCTCAAAAATATTTTTTCTAGAAAAACGATTATTTAAGTTAATTGTCTCCTCCCACCACCTAATGCCCCTACTCCACACCCTCATACTAAGTAAGAAATCCACTTGTTTCCTGATGACGTTTTTTTTGTCTTCGAGTTCATTTCACTGGTGAAGTAATTGGTAGAAGTTCACCATTTAGGTTTGAAACTATAATCAATTTTTTTTGTCCAAGTAACATGAAACAAAGATCTTCGTAGTGTATGTTATTCTTCTAAGTAACACATATCGCCCTATAAAAGTAAAAAGGCCAGGAGTAATTTTAGTGCAGTTATTAGAGGAGTTCTGTTGATAATTGTGTAGAACATGATATCAATAAGAAGGTCAAAATTCAATATTCTTGTGATTGGATGAGATTTATTATTTTGGCATTCCCTTGGCATCTTTTGTGTTCCGACTAACTTCCAATCATTCTGCCCATCAGTGATTTATGTTATGGAATTTCCATTTGATGGTTAGGGACTATCTATTAATGGGTACTTCTCTTCCGCTGATAATGGGCTGATTCTGGATAGTTCGTCTCACTATAATCAACTCACTTGCTTTCCTTCCATTTCCATGACACTCTAGTTGTGCCGTATAAATCAAGACGGAGGGAGTAATATGTATTACAGTTATATCATGTTCCAGTGCTCAAAGAGCAAATCTTATGTTTACTTACTGGTTCTGTTCTTCTTAGGCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACAGTATGTTTACTTTTCTTCATTAGAATATTTCAAGTGCTATAGCCTTGATTAGTTTAATACTAAGCCCATATTCACAGGTATTTCTCTGATTGAATGGAGAGCTTATCAGAAACCATTAAATGATTGTTTTTCATTTATTGCAAAACTAGTTGGTGATATAGGCACATTTAGCTATAATTATAAAACAGCAGTACAATATTTTAGCTAGTAACGTTGCATAGAGAAGTTTGGAGAAAGTGTTGAAATTAGCTTGCTGTTAGTTTCTTTTTATTAGACAAATAATGCAAGCAGCTGGCCTATCTTGTATGACATTTTAGATTGACATTTATTGTGTCGTTAGCTCATTTCTAATCTTTTGTTTTGCTCTCTAAATTCATTCGAAATTTGATTCTCCTCACTTGCTCCATGATTTGACAATCTTAATTTAATATCACTGTTAAATAGCATATTGCAAAATTAGAATACTTGAGCCTTCTAATGATTTTTCTCTTGGATGAAGAATAGATCTTTTTGGCTATATCTTACCTACATCTATTGGTATTGAGGTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTTCCTCCAGTATCTCAGCTAAGCAGGTTATTCTTTTTCTTTTCTACCAATATTACTGTTCTTGTTATTATGAATTGCAGGTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAGGTATATCTTTTACTCCATATGAAGTAATTCCTACATGATGGAGACTATTGAAATACAACTATGCATTTATATAGTACATTTTTACTTAAGTTGATATGTTCCAATGGTGAATAGGCTTAAAAACATCTGATGCATAAGTGTATGTGATGTGGTGGTGAGGATTAAGGTGATGTGACATTTCGAAGATATGTCAGGTATCTGATAATAGATATTTGAATAAGTATATGCTTATCCCGGCCTGTGACTTTGAGCTTATTTGATCCCCATCCTTACAAATGATTTTTTTTTTCAGAAACTAGAAGGATTATTTTATAGTTATATTCACCGTGTGCGAGACTTTAAATAAAGAGAACGTACATTCTTTGCTAAATTAGACTGCAACAAGGAAGAGCTCAATTGCCTGATTTTACCAACTTTCCTTATGCCAATATGAATAACCATAGTTTACAAGTGGAGTTCTTGCAGAAAAATTCCTTTCCGGTTTCTATTTGTGAATTGTGACATTAATTTCATCCTTGAAATTCGGCATAGGTCTTTGAATGTTGGGATCATTAGAATACATGAATTACTGGGTCTCTGGTATAATATTGGAGCCTCAAAATTACCGGTAATTGATGTGACTGTTGTAGGCTTATTCATAAGTCTATGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGGAATCTGGTTCATTACAGCCCATCAACATTACTCTCTCCAGTCTCCACCCATGAATTTGTTTCCCAAGACTTCTTTTTACTGACCATACCAGTTTGTAAGGATGTCGAGAATGCTTCCCCTTTTATCTGCTTATCAGAACACCAATACAATTGCCTCACAGCTCTCAGTTTATTAGTTAGCTTGTCTGATCTTCTCTAAGCCCTCCTTTTGTTACTATTATGAATTTGTTCTTTCTTGATGGTGTGGTGCAACATGATTTTCTCGGAAACCTTCTTGCTGACTTAACTATTAGTGCAATGGTGTAATATGGAGTATTACACAATTATACAACTGTGATTGTTTAACATGGAGTAAATTGTTCTTCTGCCTAATTGCAGGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTG</genome_strand>
        <mrna_strand>AAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAG.......................................................................................................................................ATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATG.....................................................................................................................................................................................................................................................................................................GGTGCTGACATTGATGAAAAGAAGCAATTTTTTTAAAGCGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGTCCACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAA........................................................................................................GTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310003" ref_strand="+" ref_description="SGN-E310003 [cTOA-4-G13]">
      <seq>agggtggaaagagaccttatccttgacttatctactaatttaaacagaggcacaagttgagtcaataatggagagagactatgaatagactgatttctatttagcacacgtgagcattacaactccaggcataacaagggagtattttttgaaaattgcttaggtttctaaattttcatcgctgctaggctttggcatagagaattgtatctgctattacctcaccatcatgatctttgaaccatcttaatcctgtcaagtatgatcagaatggttgttgttacagttgtactactcaatactgtcaaactggaagtgcagagatcttttgtttcgtattacgaaggcaggaaagagtgaatgctgatgaaaactggtgtatttacatctttatgtgaagggcagaaagagggtgaatgtggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="102208" stop="101184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101909" g_stop="101484" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E310003" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101909" e_stop="101484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGG</genome_strand>
        <mrna_strand>AGGGTGGAAAGAGACCTTATCCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467800" ref_strand="+" ref_description="SGN-E467800 [cSTB-1-P19]">
      <seq>tcaatggcacgtcgcaaaattctagcggacatgggttatgaatttacagttatgggtgccgacattgatgaaaagaggattaggaaggataatgcagaggaattagtggtagctctagcagaggcaaaggcagatgctatcatgtcaaggctcaaaacaactgatcatttggaggaaaatacccattccactctgttaattactgcagatacagtggctgtgtacgatggaattattagagaaaagccatcaagtaaggaagaagcgcgtcagttcatcaaatgtatgtttgtatttgcggtctgcagttccctccagtatctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="104944" stop="102410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104644" g_stop="104591" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104297" g_stop="104223" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="129" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103450" g_stop="103367" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="213" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102821" g_stop="102710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="326" r_length="113" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E467800" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104644" e_stop="104591"/>
          <exon e_start="104297" e_stop="104223"/>
          <exon e_start="103450" e_stop="103367"/>
          <exon e_start="102821" e_stop="102710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATGGTACGTTCAATTTTGTTTTAAAAGATTCTGTATTTTGCTAAAACTTGCACTGTCTGTCCAGATTAAGTTTTGGACCTGCTCGGGCTCGTTTGGCGTGAGAGATTAAAAATAAAATAGTGATGAGATAAGGAATGGTGATGGATAAACTTATTCCACTATTTATATCATAGTGAATACATACTAGGATAAGTTATCCCACAATAGCTAACTCATGAGATAACTTATTTCCAATTAAACGAGCTCTTAGTTTTCTAGTGTATTGCGACTTATATTTTAATTTTTTTTTGGAGTAGGGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAGGTATACTACCTCTTCTCTATTACCGGTGTGTTTGGTTATATGGTTGATAAAAATGTTCTCAAAAATATTTTTTCTAGAAAAACGATTATTTAAGTTAATTGTCTCCTCCCACCACCTAATGCCCCTACTCCACACCCTCATACTAAGTAAGAAATCCACTTGTTTCCTGATGACGTTTTTTTTGTCTTCGAGTTCATTTCACTGGTGAAGTAATTGGTAGAAGTTCACCATTTAGGTTTGAAACTATAATCAATTTTTTTTGTCCAAGTAACATGAAACAAAGATCTTCGTAGTGTATGTTATTCTTCTAAGTAACACATATCGCCCTATAAAAGTAAAAAGGCCAGGAGTAATTTTAGTGCAGTTATTAGAGGAGTTCTGTTGATAATTGTGTAGAACATGATATCAATAAGAAGGTCAAAATTCAATATTCTTGTGATTGGATGAGATTTATTATTTTGGCATTCCCTTGGCATCTTTTGTGTTCCGACTAACTTCCAATCATTCTGCCCATCAGTGATTTATGTTATGGAATTTCCATTTGATGGTTAGGGACTATCTATTAATGGGTACTTCTCTTCCGCTGATAATGGGCTGATTCTGGATAGTTCGTCTCACTATAATCAACTCACTTGCTTTCCTTCCATTTCCATGACACTCTAGTTGTGCCGTATAAATCAAGACGGAGGGAGTAATATGTATTACAGTTATATCATGTTCCAGTGCTCAAAGAGCAAATCTTATGTTTACTTACTGGTTCTGTTCTTCTTAGGCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACAGTATGTTTACTTTTCTTCATTAGAATATTTCAAGTGCTATAGCCTTGATTAGTTTAATACTAAGCCCATATTCACAGGTATTTCTCTGATTGAATGGAGAGCTTATCAGAAACCATTAAATGATTGTTTTTCATTTATTGCAAAACTAGTTGGTGATATAGGCACATTTAGCTATAATTATAAAACAGCAGTACAATATTTTAGCTAGTAACGTTGCATAGAGAAGTTTGGAGAAAGTGTTGAAATTAGCTTGCTGTTAGTTTCTTTTTATTAGACAAATAATGCAAGCAGCTGGCCTATCTTGTATGACATTTTAGATTGACATTTATTGTGTCGTTAGCTCATTTCTAATCTTTTGTTTTGCTCTCTAAATTCATTCGAAATTTGATTCTCCTCACTTGCTCCATGATTTGACAATCTTAATTTAATATCACTGTTAAATAGCATATTGCAAAATTAGAATACTTGAGCCTTCTAATGATTTTTCTCTTGGATGAAGAATAGATCTTTTTGGCTATATCTTACCTACATCTATTGGTATTGAGGTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTT-CCTCCAGTATCTCAG</genome_strand>
        <mrna_strand>TCAATGGCACGTCGCAAAATTCTAGCGGACATGGGTTATGAATTTACAGTTATG.....................................................................................................................................................................................................................................................................................................GGTGCCGACATTGATGAAAAGAGGATTAGGAAGGATAATGCAGAGGAATTAGTGGTAGCTCTAGCAGAGGCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCTATCATGTCAAGGCTCAAAACAACTGATCATTTGGAGGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGTGTACGATGGAATTATTAGAGAAAAGCCATCAAGTAAGGAAGAAGCGCGTCAGTTCATCAAATGTATGTTTGTATTTGCGGTCTGCAGTTCCCTCCAGTATCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411121" ref_strand="+" ref_description="SGN-E411121 [STM-14-K17]">
      <seq>ttgtcgttcaagataatcttgggttcgtcctcaatggcacgtcgcaaaattctagcggacatgggttatgaatttacagttatgggtgccgacattgatgaaaagaggattaggaaggataatgcagaggaattagnggtagctctagcagaggcaaaggcagatgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="104973" stop="103910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104809" g_stop="104798" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104662" g_stop="104591" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="84" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104297" g_stop="104223" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="159" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E411121" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104809" e_stop="104798"/>
          <exon e_start="104662" e_stop="104591"/>
          <exon e_start="104297" e_stop="104223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGTTCAAGGTTTGCTTTTTCACCCACTCATGAACTGTTCTCCTTTATCTCAAATCTTTCTTTTAAGGATTAAAACGGAAGTTAATGTTTTCTTTAATATACTGAATGTACATGTAAATCACTAATGGTTCTATATGTTTAAAGATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATGGTACGTTCAATTTTGTTTTAAAAGATTCTGTATTTTGCTAAAACTTGCACTGTCTGTCCAGATTAAGTTTTGGACCTGCTCGGGCTCGTTTGGCGTGAGAGATTAAAAATAAAATAGTGATGAGATAAGGAATGGTGATGGATAAACTTATTCCACTATTTATATCATAGTGAATACATACTAGGATAAGTTATCCCACAATAGCTAACTCATGAGATAACTTATTTCCAATTAAACGAGCTCTTAGTTTTCTAGTGTATTGCGACTTATATTTTAATTTTTTTTTGGAGTAGGGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG</genome_strand>
        <mrna_strand>TTGTCGTTCAAG.......................................................................................................................................ATAATCTTGGGTTCGTCCTCAATGGCACGTCGCAAAATTCTAGCGGACATGGGTTATGAATTTACAGTTATG.....................................................................................................................................................................................................................................................................................................GGTGCCGACATTGATGAAAAGAGGATTAGGAAGGATAATGCAGAGGAATTAGNGGTAGCTCTAGCAGAGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692578" ref_strand="+" ref_description="SGN-E692578 [LH_Ea09B08]">
      <seq>tatcgtgccgaattcggcacgaggtttcgaggcattttcgaaggtagtgaaatattttattgattcgaaaacatttgagaagatcaagtttgtgtatcccaataacaaagatagcgtggagttgatgaagacttttttcgatactgagaatcttccaagtgagtttgggggaaaagccacattgaattacgatcatgaagaattttccaaattgatggctcaagaagatgtcaagactgctaaattttggggccttgacgatcgaggtgacatctcatagtgttgtcacctccaaaagcaaaggtgatgcctggccaatgactgttgcatcatgtgaaagctaagcaagtccacaataactaagctgtgtattgtcaaatcttattttataaaataaaaattcttgaacagtaaaacatatgccaataattaaatgcatgtaattttgactcacttattgcatatagttaacataattagtttaattctgagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="107370" stop="106320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107152" g_stop="107131" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="43" r_length="22" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107130" i_stop="107062" i_length="69">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.453" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107061" g_stop="106617" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="504" r_length="461" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E692578" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107152" e_stop="107131"/>
          <exon e_start="107061" e_stop="106617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCGAGGCATTTTGGAAGGTAAGATTCTTCCTACAGGCGGGTTCCTTTTGGTCAATCACAATTTGATCATTCATTCTCTGTACGTAGGTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTTGGGGGAAAAGCCACATTGAATTACGATCATGAAGAATTTTCCAAATTGATGGTTCAAGAAGATGTCAAGACTGCTAAATTTTGGGGCCTTGACGATCGAGGTGACA--TC---------T----TCCAAAAGCAAAGGTGATGCCTGGCCAATGACTGTTGCATCATGTGCAAGCTAAGCAAGTCCACAATAACTAAACGGTGTATTGTCAAATCTTATTTTATAAAATAAAAATTCTTGAACAGT-AAACATATGCCAATAATTAAATGCGTGTAATTTTGAGTCACTTATTGCATATAGTTAACATAATTAGTTTAATTCCGTTTGAAAAAAAGTA</genome_strand>
        <mrna_strand>AGGTTTCGAGGCATTTTCGAAG.....................................................................GTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTTGGGGGAAAAGCCACATTGAATTACGATCATGAAGAATTTTCCAAATTGATGGCTCAAGAAGATGTCAAGACTGCTAAATTTTGGGGCCTTGACGATCGAGGTGACATCTCATAGTGTTGTCACCTCCAAAAGCAAAGGTGATGCCTGGCCAATGACTGTTGCATCATGTGAAAGCTAAGCAAGTCCACAATAACTAAGCTGTGTATTGTCAAATCTTATTTTATAAAATAAAAATTCTTGAACAGTAAAACATATGCCAATAATTAAATGCATGTAATTTTGACTCACTTATTGCATATAGTTAACATAATTAGTTTAATTCTGAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591267" ref_strand="+" ref_description="SGN-E591267 [44976]">
      <seq>gtttctctcttttgtaagatagctttcaagtccaaatctttctgccatcttcctaattcctccgttccaagaaaggaaccatgttccggagaaagtcgtctcacacgaatcaggctgatgattctgcaagccgtgatgcaaaggttagcgagttaagagtggctcttggacctctatctgggagaagcttaaagctctgtactgatgtgtgtctgaggcgatacttagaagctcgaaattggaaccttgacaaggcaaagaaaatgctcgaagagactctcaagtggagatccaactacaagcctgaagaaattcgttggcatgaagtggcacatgaaagtgaaactggcaaagtttttaaggccaattttcgtgaccgactaggcaggaccgtacttataatgaggcctgggaaacagaacacatcatctccggaaggtaatattcgtcagctagtctatctgatggagaatgctatccttaacctgccagaaggccaagaacaaatgtcttggttgatcgacttcaatggatggtcattaaacaccaacattcccattaaaactgcaagagatattatctacattttgcagaatcactatccagagaggcttgcaatagttgttctttatagtccacctagattattcgaggcattttggaaggtagtgaaatattttattgattcgaaaacatttgagaagatcaagtttgtgtatccgaataacaatgatagcgtggagttgatgaagacttttttcgatactgagaatcttccaagtgagtttgggggggaaagccacattgatttacgatcatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="108512" stop="106605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108442" g_stop="108370" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.836"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108369" i_stop="108201" i_length="169">
            <donor d_prob="0.990" d_score="0.81"/>
            <acceptor a_prob="0.580" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108200" g_stop="108133" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225">
            <donor d_prob="0.982" d_score="0.86"/>
            <acceptor a_prob="0.857" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107907" g_stop="107731" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="320" r_length="177" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107568" g_stop="107470" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="419" r_length="99" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107376" g_stop="107131" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="665" r_length="246" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107130" i_stop="107062" i_length="69">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.453" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107061" g_stop="106905" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="823" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E591267" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108442" e_stop="108370"/>
          <exon e_start="108200" e_stop="108133"/>
          <exon e_start="107907" e_stop="107731"/>
          <exon e_start="107568" e_stop="107470"/>
          <exon e_start="107376" e_stop="107131"/>
          <exon e_start="107061" e_stop="106905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTCTTTTGTATGATATCTTTCAAGTCCCAAATCTTTCTGCAATCTTCCTAATTCCT---TTCCAAGAAAAGTAATCGTTTTTTTCTTAAAGTCATTCTCATCTCTTTTCCTTTTGCTTTATTTACTTTTTCATAATCCAGCTTATCTTACCGGAATTCTAAATTTACTAGTGGTAGTCTTAGTGATGAAGCAGAGTCGCATATACATGTAACTGCTAGCACCATTTTTTCAATTAACAGGAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAGGTAACAGACAAAGTTATATTCTTACATTCCGATTTGCTTCATCAAATCCACCATGACAAAGTATCTGTCTCAATTACCCCTAGAAAATCCATTTAATGTTTAATAATAACTAGATTGACCACTGGGTAAATGTTCCATTCAAATTGAATTGTCAGGACAATTAAACTGAGCAATAACTGGTAGTTAAAACTATAGAACAGGGATTAATTTTCTATGGCAAACCAGGTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGGGTGATTGTTCTTTGACCTTTTCCATCTATATACACTTTGTACTCTCAACTTTGTCATGAACTAACCAAGATCGCGGTTATCCATCTAAAAGAATTGGATCGCTTGGTAGTATAATGTTGGAAGATCAATGATAAATTATTAATGATCTCACAATGTTCACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATAGACTTCAATGGATGGTCATTGAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCATTATCCAGAGAGGCTTGCTATAGTTGTTCTTTATAGTCCACCTAGATTTTTCGAGGCATTTTGGAAGGTAAGATTCTTCCTACAGGCGGGTTCCTTTTGGTCAATCACAATTTGATCATTCATTCTCTGTACGTAGGTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTT-GGGGGAAAAGCCACATTGAATTACGATCATGAAG</genome_strand>
        <mrna_strand>GTTTCTCTCTTTTGTAAGATAGCTTTCAAGT-CCAAATCTTTCTGCCATCTTCCTAATTCCTCCGTTCCAAGAAAG.........................................................................................................................................................................GAACCATGTTCCGGAGAAAGTCGTCTCACACGAATCAGGCTGATGATTCTGCAAGCCGTGATGCAAAG.................................................................................................................................................................................................................................GTTAGCGAGTTAAGAGTGGCTCTTGGACCTCTATCTGGGAGAAGCTTAAAGCTCTGTACTGATGTGTGTCTGAGGCGATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAGAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCAACTACAAGCCTGAAGAAATTCGTTGG..................................................................................................................................................................CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTTTAAGGCCAATTTTCGTGACCGACTAGGCAGGACCGTACTTATAATGAGGCCTGGGAAACAG.............................................................................................AACACATCATCTCCGGAAGGTAATATTCGTCAGCTAGTCTATCTGATGGAGAATGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATCGACTTCAATGGATGGTCATTAAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCACTATCCAGAGAGGCTTGCAATAGTTGTTCTTTATAGTCCACCTAGATTATTCGAGGCATTTTGGAAG.....................................................................GTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCGAATAACAATGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTTGGGGGGGAAAGCCACATTGATTTACGATCATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460587" ref_strand="+" ref_description="SGN-E460587 [cPRO-31-B22]">
      <seq>acagcatgaagtggcacatgaaagtgaaactggcaaagtttttaaggccaattttcgtgaccgactaggcaggaccgtacttataatgaggcctgggaaacagaacacatcatctccggaaggtaatattcgtcagctagtctatctgatggagaatgctatccttaacctgccagaaggccaagaacaaatgtcttggttgatcgacttcaatggatggtcattaaacaccaacattcccattaaaactgcaagagatattatctacattttgcagaatcactatccagagaggcttgcaatagttgttctttatagtccacctagattattcgaggcattttggaaggtagtgaaatattttattgattcgaaaacatttgagaagatcaagtttgtgtatccgaataacaatgataacgtggagttgatgaagacttttttcgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="107872" stop="106659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107572" g_stop="107470" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107376" g_stop="107131" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="349" r_length="246" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107130" i_stop="107062" i_length="69">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.453" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107061" g_stop="106959" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="452" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E460587" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107572" e_stop="107470"/>
          <exon e_start="107376" e_stop="107131"/>
          <exon e_start="107061" e_stop="106959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATAGACTTCAATGGATGGTCATTGAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCATTATCCAGAGAGGCTTGCTATAGTTGTTCTTTATAGTCCACCTAGATTTTTCGAGGCATTTTGGAAGGTAAGATTCTTCCTACAGGCGGGTTCCTTTTGGTCAATCACAATTTGATCATTCATTCTCTGTACGTAGGTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTG</genome_strand>
        <mrna_strand>ACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTTTAAGGCCAATTTTCGTGACCGACTAGGCAGGACCGTACTTATAATGAGGCCTGGGAAACAG.............................................................................................AACACATCATCTCCGGAAGGTAATATTCGTCAGCTAGTCTATCTGATGGAGAATGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATCGACTTCAATGGATGGTCATTAAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCACTATCCAGAGAGGCTTGCAATAGTTGTTCTTTATAGTCCACCTAGATTATTCGAGGCATTTTGGAAG.....................................................................GTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCGAATAACAATGATAACGTGGAGTTGATGAAGACTTTTTTCGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345532" ref_strand="+" ref_description="SGN-E345532 [cTOF-18-O10]">
      <seq>caacttcaagtggtgttgtatacttttcccacaagaattaatttctattgtgttcatgtagagtgatcgaggggatcacaggaatcatgttccggagaaagtcgtctcgcacaattcaggcagatgattctgcagcccgtggtgcaaaggttagcgagttaagagaggctgttggacctctctctgggcgaaacttaaagttctgtaccgatgtgtgtctgaggcaatacttagaagctcgaaattggaaccttgacaaggcaaaaaaaatgctcgaagagactctcaagtggagatccacctataagcctgaagaaattcgttggcatgaagtggcacatgaaagtgaaactggcaaagtttctaagggtaattttcaagaccgacttggcagaaccgtccttataatgaggcctgggaaacaggttagtgttcttactttttaaattaaaatctaatctatatatctgaagtttacagactggagtatccgaattgttctgtttcatggatgacagaatacatcatctccggaaggtaatattcgtcatctagtctatctgatggagagtgctatccttaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="108835" stop="107009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108535" g_stop="108455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108454" i_stop="108201" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108200" g_stop="108133" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="149" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107907" g_stop="107731" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="326" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107568" g_stop="107309" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="586" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E345532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108535" e_stop="108455"/>
          <exon e_start="108200" e_stop="108133"/>
          <exon e_start="107907" e_stop="107731"/>
          <exon e_start="107568" e_stop="107309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAGGTTTCTCTCTTTATTTCTCTCTTTTGTATGATATCTTTCAAGTCCCAAATCTTTCTGCAATCTTCCTAATTCCTTTCCAAGAAAAGTAATCGTTTTTTTCTTAAAGTCATTCTCATCTCTTTTCCTTTTGCTTTATTTACTTTTTCATAATCCAGCTTATCTTACCGGAATTCTAAATTTACTAGTGGTAGTCTTAGTGATGAAGCAGAGTCGCATATACATGTAACTGCTAGCACCATTTTTTCAATTAACAGGAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAGGTAACAGACAAAGTTATATTCTTACATTCCGATTTGCTTCATCAAATCCACCATGACAAAGTATCTGTCTCAATTACCCCTAGAAAATCCATTTAATGTTTAATAATAACTAGATTGACCACTGGGTAAATGTTCCATTCAAATTGAATTGTCAGGACAATTAAACTGAGCAATAACTGGTAGTTAAAACTATAGAACAGGGATTAATTTTCTATGGCAAACCAGGTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGGGTGATTGTTCTTTGACCTTTTCCATCTATATACACTTTGTACTCTCAACTTTGTCATGAACTAACCAAGATCGCGGTTATCCATCTAAAAGAATTGGATCGCTTGGTAGTATAATGTTGGAAGATCAATGATAAATTATTAATGATCTCACAATGTTCACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCT</genome_strand>
        <mrna_strand>CAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAG..............................................................................................................................................................................................................................................................GAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAG.................................................................................................................................................................................................................................GTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGG..................................................................................................................................................................CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307098" ref_strand="+" ref_description="SGN-E307098 [cLEY-15-N11]">
      <seq>gactacaagcgtgtgaaaaattccattttccgtctgttccgtctttgtgactgttcaagtgaatgatcacctactttgcgtgatatctctacaacttcaagtggtgttgtatacttttcccacaagaattaatttctattgtgttcatgtagagtgatcgaggggatcacaggaatcatgttccggagaaagtcgtctcgcacaattcaggcagatgattctgcagcccgtggtgcaaaggttagcgagttaagagaggctgttggacctctctctgggcgaaacttaaagttctgtaccgatgtgtgtctgaggcaatacttagaagctcgaaattggaaccttgacaaggcaaaaaaaatgctcgaagagactctcaagtggagatccacctataagcctgaagaaattcgttggcatgaagtggcacatgaaagtgaaactggcaaagtttctaagggtaattttcaagaccgacttggcagaaccgtccttataatgaggcctgngaaacagaatacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="108926" stop="107166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108626" g_stop="108455" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108454" i_stop="108201" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108200" g_stop="108133" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="240" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107907" g_stop="107731" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="417" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107568" g_stop="107470" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="516" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107376" g_stop="107366" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="527" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E307098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108626" e_stop="108455"/>
          <exon e_start="108200" e_stop="108133"/>
          <exon e_start="107907" e_stop="107731"/>
          <exon e_start="107568" e_stop="107470"/>
          <exon e_start="107376" e_stop="107366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACAAGCGTGTGAAAAATTCCATTTTCCGTCTGTTCCCTCTTTGTAACTGTTCAAGTGAATGATCACCTACTTTGCGTGATATCTCTACAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAGGTTTCTCTCTTTATTTCTCTCTTTTGTATGATATCTTTCAAGTCCCAAATCTTTCTGCAATCTTCCTAATTCCTTTCCAAGAAAAGTAATCGTTTTTTTCTTAAAGTCATTCTCATCTCTTTTCCTTTTGCTTTATTTACTTTTTCATAATCCAGCTTATCTTACCGGAATTCTAAATTTACTAGTGGTAGTCTTAGTGATGAAGCAGAGTCGCATATACATGTAACTGCTAGCACCATTTTTTCAATTAACAGGAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAGGTAACAGACAAAGTTATATTCTTACATTCCGATTTGCTTCATCAAATCCACCATGACAAAGTATCTGTCTCAATTACCCCTAGAAAATCCATTTAATGTTTAATAATAACTAGATTGACCACTGGGTAAATGTTCCATTCAAATTGAATTGTCAGGACAATTAAACTGAGCAATAACTGGTAGTTAAAACTATAGAACAGGGATTAATTTTCTATGGCAAACCAGGTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGGGTGATTGTTCTTTGACCTTTTCCATCTATATACACTTTGTACTCTCAACTTTGTCATGAACTAACCAAGATCGCGGTTATCCATCTAAAAGAATTGGATCGCTTGGTAGTATAATGTTGGAAGATCAATGATAAATTATTAATGATCTCACAATGTTCACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATC</genome_strand>
        <mrna_strand>GACTACAAGCGTGTGAAAAATTCCATTTTCCGTCTGTTCCGTCTTTGTGACTGTTCAAGTGAATGATCACCTACTTTGCGTGATATCTCTACAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAG..............................................................................................................................................................................................................................................................GAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAG.................................................................................................................................................................................................................................GTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGG..................................................................................................................................................................CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGNGAAACAG.............................................................................................AATACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344659" ref_strand="+" ref_description="SGN-E344659 [cTOF-14-P17]">
      <seq>ccggagagatcaaaatgaactctcgagatggtctgtgaatacctattagtatttgctaacgtggtaaatggcgataatcaatctaaccaagagatgttacggcaattcacttgaatatgttccaagttcatgaaaacagaggaagtggatgttattacagaaattatttcagtagctgaggtgggtacagctccaagtagtgaggagacacttcttattaggcatgcatgtaatgtagttgccgaaattcaacagacgattataaaccaacacctaaggaatctttgtggattgtggaattgcttgctgagatgttgacttgttaaggagacgcaggcctagtatggtgcagtattttgtactttcctcctcctctatggagacggactctggcaagtcagaacagatcattgatctaatccatcggagattcaagggtatagcagtagtaccaccaaatgtaagtgtttatccaacaatgactactaggttgtgtaaagactgcagagaggagaaagatcatttgccgttgagggtgtataagtgatatttggcatttgccaattgtgaatataagatccgtgaagcttattgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="110208" stop="109013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109908" g_stop="109314" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="605"/>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="SGN-E344659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109908" e_stop="109314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGAGATCAAAATGAACTCTCGAGATGGTCTGTGAATACCTATTAGTATTTGCTAACGTGGTAAATGGCGATAATCAATCTAACCAAGAGATGTTACGGCAATTCACTTGAATATGTTCCAAGTTCATGAAAACAGAGGAAGTGGATGTTATTACAGAAATTATTTCAGTAGCTGAGGTGGGTACAGCTCCAAGTAGTGAGGAGACACTTCTTATTAGGCATGCATGTAATGTAGTTGCCGAAATTCAACAGACGATTATAAACCAACACCTAAGGAATCTTTGTGGATTGTGGAATTGCTTGCTGAGATGTTGACTTGTTAAGGAGACGCAGGCCTAGTATGGTGCAGTATTTTGTACTTTCCTCCTCCTCTATGGAGACGGACTCTGGCAAGTCAGAACAGATCATTGATCTAATCCATCGGAGATTCAAGGGTATAGCAGTAGTACCACCAAATGTAAGTGTTTATCCAACAATGACTACTAGGTTGTGTAAAGACTGCAGAGAGGAGAAAGATCATTTGCCGTTGAGGGTGTATAAGTGATATTTGGCATTTGCCAATTGTGAATATAAGATCCGTGAAGCTTATTGT</genome_strand>
        <mrna_strand>CCGGAGAGATCAAAATGAACTCTCGAGATGGTCTGTGAATACCTATTAGTATTTGCTAACGTGGTAAATGGCGATAATCAATCTAACCAAGAGATGTTACGGCAATTCACTTGAATATGTTCCAAGTTCATGAAAACAGAGGAAGTGGATGTTATTACAGAAATTATTTCAGTAGCTGAGGTGGGTACAGCTCCAAGTAGTGAGGAGACACTTCTTATTAGGCATGCATGTAATGTAGTTGCCGAAATTCAACAGACGATTATAAACCAACACCTAAGGAATCTTTGTGGATTGTGGAATTGCTTGCTGAGATGTTGACTTGTTAAGGAGACGCAGGCCTAGTATGGTGCAGTATTTTGTACTTTCCTCCTCCTCTATGGAGACGGACTCTGGCAAGTCAGAACAGATCATTGATCTAATCCATCGGAGATTCAAGGGTATAGCAGTAGTACCACCAAATGTAAGTGTTTATCCAACAATGACTACTAGGTTGTGTAAAGACTGCAGAGAGGAGAAAGATCATTTGCCGTTGAGGGTGTATAAGTGATATTTGGCATTTGCCAATTGTGAATATAAGATCCGTGAAGCTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>102</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5646" PGL_stop="8426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5646" e_stop="5701"/>
            <exon e_start="7347" e_stop="7444"/>
            <exon e_start="7725" e_stop="8426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5646" e_stop="5701" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5702" i_stop="7346" i_length="1645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7347" e_stop="7444" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="7445" i_stop="7724" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="7725" e_stop="8426" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5646" stop="5701"/>
              <exon start="7347" stop="7444"/>
              <exon start="7725" stop="8426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAGTCTAAGCAAAGTGATTCTTGGACTGATTGGGTCTCTTCCAAATTGTCGCA : GCACCAAGACGATGCGAAAGATGAAGCCCAAAGATTAGCGGATAGAGCAAAGGGAACTGCATCAAATGCAAGAGATTCTGTTAATTCTGCTGCACATG : AAACCCAAAGGTATGGTTCTCAAAAGGCTAAGGAGATGGCTGATGTAGCATCTGACAAATTTGGTGATGCTAAAAATTATGCGTCCAAGAAAGCCAATCAAGCTATGGATGCAGCAGCAGATACCGCTAGTCATGCCAAAGAAAGAGGAAAAGAAAATGCGTATGATGCTTATGCCTATGCATCGGAGAAAACCGGCCAAGCCACAAAAACAGCTGCCGAGTTTGCCAAGGAAAAGGCTCATGGTGCTTATGCCTATGCATCTGATAAGGCAGGTCAAGCCAAGAACATTGCTTCAGATACGGCCGCCAATGCTAAAGAAAGTGCCAAAAATAAGGCTCATGATGCTACTGATTTTGCCAAAGAGAAGGCACATGATGCTTATGCTTATGCTTCTGACAAGGCAAGTCAAGCCACTAACATTGCTTCTGACATGGCCGCTGATGCCAAAGAAAGCGTCAAACATAAAGCTTACAATGCCAAAGATGTCGCCTCTGAGAAGGCGCATGATTCCATGAATGCTGCTTCCGGAATGGGTAGTTCAGCTAGGAATAAAGCATCGGATGCTTATGGTTTTGCTTCTGATAAAGCAAGTGATGCGAAAGAAATTGGGAAAGACAAAGCGTATGATGCTTATGGATTTGTATCTGAAAAGATGAACCGAGCAAGGGACGAGGCTTCCAATAAAGCATCGGATGCGTATG</gDNA_template>
            <first_frame> Q  Q  S  K  Q  S  D  S  W  T  D  W  V  S  S  K  L  S  Q :   H  Q  D  D  A  K  D  E  A  Q  R  L  A  D  R  A  K  G  T  A  S  N  A  R  D  S  V  N  S  A  A  H   : E  T  Q  R  Y  G  S  Q  K  A  K  E  M  A  D  V  A  S  D  K  F  G  D  A  K  N  Y  A  S  K  K  A  N  Q  A  M  D  A  A  A  D  T  A  S  H  A  K  E  R  G  K  E  N  A  Y  D  A  Y  A  Y  A  S  E  K  T  G  Q  A  T  K  T  A  A  E  F  A  K  E  K  A  H  G  A  Y  A  Y  A  S  D  K  A  G  Q  A  K  N  I  A  S  D  T  A  A  N  A  K  E  S  A  K  N  K  A  H  D  A  T  D  F  A  K  E  K  A  H  D  A  Y  A  Y  A  S  D  K  A  S  Q  A  T  N  I  A  S  D  M  A  A  D  A  K  E  S  V  K  H  K  A  Y  N  A  K  D  V  A  S  E  K  A  H  D  S  M  N  A  A  S  G  M  G  S  S  A  R  N  K  A  S  D  A  Y  G  F  A  S  D  K  A  S  D  A  K  E  I  G  K  D  K  A  Y  D  A  Y  G  F  V  S  E  K  M  N  R  A  R  D  E  A  S  N  K  A  S  D  A  Y  </first_frame>
            <second_frame>  N  S  L  S  K  V  I  L  G  L  I  G  S  L  P  N  C  R   : S  T  K  T  M  R  K  M  K  P  K  D  *  R  I  E  Q  R  E  L  H  Q  M  Q  E  I  L  L  I  L  L  H  M  :  K  P  K  G  M  V  L  K  R  L  R  R  W  L  M  *  H  L  T  N  L  V  M  L  K  I  M  R  P  R  K  P  I  K  L  W  M  Q  Q  Q  I  P  L  V  M  P  K  K  E  E  K  K  M  R  M  M  L  M  P  M  H  R  R  K  P  A  K  P  Q  K  Q  L  P  S  L  P  R  K  R  L  M  V  L  M  P  M  H  L  I  R  Q  V  K  P  R  T  L  L  Q  I  R  P  P  M  L  K  K  V  P  K  I  R  L  M  M  L  L  I  L  P  K  R  R  H  M  M  L  M  L  M  L  L  T  R  Q  V  K  P  L  T  L  L  L  T  W  P  L  M  P  K  K  A  S  N  I  K  L  T  M  P  K  M  S  P  L  R  R  R  M  I  P  *  M  L  L  P  E  W  V  V  Q  L  G  I  K  H  R  M  L  M  V  L  L  L  I  K  Q  V  M  R  K  K  L  G  K  T  K  R  M  M  L  M  D  L  Y  L  K  R  *  T  E  Q  G  T  R  L  P  I  K  H  R  M  R  M </second_frame>
            <third_frame>   T  V  *  A  K  *  F  L  D  *  L  G  L  F  Q  I  V  A  :  A  P  R  R  C  E  R  *  S  P  K  I  S  G  *  S  K  G  N  C  I  K  C  K  R  F  C  *  F  C  C  T  * :   N  P  K  V  W  F  S  K  G  *  G  D  G  *  C  S  I  *  Q  I  W  *  C  *  K  L  C  V  Q  E  S  Q  S  S  Y  G  C  S  S  R  Y  R  *  S  C  Q  R  K  R  K  R  K  C  V  *  C  L  C  L  C  I  G  E  N  R  P  S  H  K  N  S  C  R  V  C  Q  G  K  G  S  W  C  L  C  L  C  I  *  *  G  R  S  S  Q  E  H  C  F  R  Y  G  R  Q  C  *  R  K  C  Q  K  *  G  S  *  C  Y  *  F  C  Q  R  E  G  T  *  C  L  C  L  C  F  *  Q  G  K  S  S  H  *  H  C  F  *  H  G  R  *  C  Q  R  K  R  Q  T  *  S  L  Q  C  Q  R  C  R  L  *  E  G  A  *  F  H  E  C  C  F  R  N  G  *  F  S  *  E  *  S  I  G  C  L  W  F  C  F  *  *  S  K  *  C  E  R  N  W  E  R  Q  S  V  *  C  L  W  I  C  I  *  K  D  E  P  S  K  G  R  G  F  Q  *  S  I  G  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5646" stop="5701"/>
                    <exon start="7347" stop="7444"/>
                    <exon start="7725" stop="8425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQSKQSDSWTDWVSSKLSQHQDDAKDEAQRLADRAKGTASNARDSVNSAAHETQRYGSQKAKEMADVASDKFGDAKNYASKKANQAMDAAADTASHAKERGKENAYDAYAYASEKTGQATKTAAEFAKEKAHGAYAYASDKAGQAKNIASDTAANAKESAKNKAHDATDFAKEKAHDAYAYASDKASQATNIASDMAADAKESVKHKAYNAKDVASEKAHDSMNAASGMGSSARNKASDAYGFASDKASDAKEIGKDKAYDAYGFVSEKMNRARDEASNKASDAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11088" PGL_stop="10019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11088" e_stop="10019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11088" e_stop="10019" e_length="1070"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11088" stop="10417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11087" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11087" stop="10443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11087" stop="10446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11087" stop="10476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11087" stop="10530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11075" stop="10462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10564" stop="10019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10500" stop="10026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10247" stop="10019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGGCCAAGAAAAGGATATGGGCTTGCCTAATCCCAATCCCATGAGTTATAACCCATCTCAACTTAACCAGCAAGAATCATCTTCCTCTGCAGCAAACAAGTTCCTTACCGCACCAAATAGAACAACAAATGAACATGAGAATACCATTTTTAGCCCTAACCAAACCCTAGATCAGCATAATATTACTCAAAATTCAGATCCAGATCCAGTTCGACAACTATCTACTAGTTCAGCAAGTGAGAGGAATATTACCCCCGTCCGGTACAAAGAATGTCTCAAAAATCATGCTGCAAATTTGGGAGGATATGTACTAGACGGTTGCGGAGAATTCATGCCAAGCGGAGAAGAGGAGACACTAGAATACCTGAAATGTGCAGCTTGTGATTGTCACCGCAATTTTCATAGGAAAGAGACTGAGGACGAATCACAAACACCTGGTGTGCATAGAAATAACCACCGTATACCCAACCAAACTCCGCCTTCTCTTCCAGCTGTGCCTACGCAGCAACAACACCATCATAAATACCCTCACAGCTATCCAAGAGGTCACATGGCACCAGTAATGATGAGTTTCGGCGGGAACACGGGAGTTGCAGCTGAATCATCAAGTGAAGATCTGAATATGTTTCACGGAGGACAAGGGGTAATTCAGCCTTGTAATTTTTCGGCATCGAAGAAGAGATTTCGAACGAAATTCAGTCAACAACAGAAAGATAGAATGCTAGAGTTCGCTGAGAAACTGGGATGGAGAATTCAGAAACAAGATGAACAAGAAGTGCATCAATTTTGTAATGAAGTGGGCGTGAAGAGACAAGTGTTCAAAGTGTGGATGCACAACAGCAAACAAGCAACCAAGAAGAAACAAAATTAAACAGGCAAGACTACAAAATCCCAATTTAGATAAATTAATTAGAGACACTCTTTTTTTTTGTGCATAAATCTGATAGTTTATTATTAGACAAATAGTAGTAATTACTATTCTTTGATCACAAAATTTAAACCTTATGTGGTAAGTACTCACTAGTAGCACCAATTAATTCTATCACAAAAGTCTCTTTAAATTCCCT</gDNA_template>
            <first_frame> Q  R  P  R  K  G  Y  G  L  A  *  S  Q  S  H  E  L  *  P  I  S  T  *  P  A  R  I  I  F  L  C  S  K  Q  V  P  Y  R  T  K  *  N  N  K  *  T  *  E  Y  H  F  *  P  *  P  N  P  R  S  A  *  Y  Y  S  K  F  R  S  R  S  S  S  T  T  I  Y  *  F  S  K  *  E  E  Y  Y  P  R  P  V  Q  R  M  S  Q  K  S  C  C  K  F  G  R  I  C  T  R  R  L  R  R  I  H  A  K  R  R  R  G  D  T  R  I  P  E  M  C  S  L  *  L  S  P  Q  F  S  *  E  R  D  *  G  R  I  T  N  T  W  C  A  *  K  *  P  P  Y  T  Q  P  N  S  A  F  S  S  S  C  A  Y  A  A  T  T  P  S  *  I  P  S  Q  L  S  K  R  S  H  G  T  S  N  D  E  F  R  R  E  H  G  S  C  S  *  I  I  K  *  R  S  E  Y  V  S  R  R  T  R  G  N  S  A  L  *  F  F  G  I  E  E  E  I  S  N  E  I  Q  S  T  T  E  R  *  N  A  R  V  R  *  E  T  G  M  E  N  S  E  T  R  *  T  R  S  A  S  I  L  *  *  S  G  R  E  E  T  S  V  Q  S  V  D  A  Q  Q  Q  T  S  N  Q  E  E  T  K  L  N  R  Q  D  Y  K  I  P  I  *  I  N  *  L  E  T  L  F  F  F  V  H  K  S  D  S  L  L  L  D  K  *  *  *  L  L  F  F  D  H  K  I  *  T  L  C  G  K  Y  S  L  V  A  P  I  N  S  I  T  K  V  S  L  N  S   </first_frame>
            <second_frame>  R  G  Q  E  K  D  M  G  L  P  N  P  N  P  M  S  Y  N  P  S  Q  L  N  Q  Q  E  S  S  S  S  A  A  N  K  F  L  T  A  P  N  R  T  T  N  E  H  E  N  T  I  F  S  P  N  Q  T  L  D  Q  H  N  I  T  Q  N  S  D  P  D  P  V  R  Q  L  S  T  S  S  A  S  E  R  N  I  T  P  V  R  Y  K  E  C  L  K  N  H  A  A  N  L  G  G  Y  V  L  D  G  C  G  E  F  M  P  S  G  E  E  E  T  L  E  Y  L  K  C  A  A  C  D  C  H  R  N  F  H  R  K  E  T  E  D  E  S  Q  T  P  G  V  H  R  N  N  H  R  I  P  N  Q  T  P  P  S  L  P  A  V  P  T  Q  Q  Q  H  H  H  K  Y  P  H  S  Y  P  R  G  H  M  A  P  V  M  M  S  F  G  G  N  T  G  V  A  A  E  S  S  S  E  D  L  N  M  F  H  G  G  Q  G  V  I  Q  P  C  N  F  S  A  S  K  K  R  F  R  T  K  F  S  Q  Q  Q  K  D  R  M  L  E  F  A  E  K  L  G  W  R  I  Q  K  Q  D  E  Q  E  V  H  Q  F  C  N  E  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  S  K  Q  A  T  K  K  K  Q  N  *  T  G  K  T  T  K  S  Q  F  R  *  I  N  *  R  H  S  F  F  L  C  I  N  L  I  V  Y  Y  *  T  N  S  S  N  Y  Y  S  L  I  T  K  F  K  P  Y  V  V  S  T  H  *  *  H  Q  L  I  L  S  Q  K  S  L  *  I  P  </second_frame>
            <third_frame>   E  A  K  K  R  I  W  A  C  L  I  P  I  P  *  V  I  T  H  L  N  L  T  S  K  N  H  L  P  L  Q  Q  T  S  S  L  P  H  Q  I  E  Q  Q  M  N  M  R  I  P  F  L  A  L  T  K  P  *  I  S  I  I  L  L  K  I  Q  I  Q  I  Q  F  D  N  Y  L  L  V  Q  Q  V  R  G  I  L  P  P  S  G  T  K  N  V  S  K  I  M  L  Q  I  W  E  D  M  Y  *  T  V  A  E  N  S  C  Q  A  E  K  R  R  H  *  N  T  *  N  V  Q  L  V  I  V  T  A  I  F  I  G  K  R  L  R  T  N  H  K  H  L  V  C  I  E  I  T  T  V  Y  P  T  K  L  R  L  L  F  Q  L  C  L  R  S  N  N  T  I  I  N  T  L  T  A  I  Q  E  V  T  W  H  Q  *  *  *  V  S  A  G  T  R  E  L  Q  L  N  H  Q  V  K  I  *  I  C  F  T  E  D  K  G  *  F  S  L  V  I  F  R  H  R  R  R  D  F  E  R  N  S  V  N  N  R  K  I  E  C  *  S  S  L  R  N  W  D  G  E  F  R  N  K  M  N  K  K  C  I  N  F  V  M  K  W  A  *  R  D  K  C  S  K  C  G  C  T  T  A  N  K  Q  P  R  R  N  K  I  K  Q  A  R  L  Q  N  P  N  L  D  K  L  I  R  D  T  L  F  F  C  A  *  I  *  *  F  I  I  R  Q  I  V  V  I  T  I  L  *  S  Q  N  L  N  L  M  W  *  V  L  T  S  S  T  N  *  F  Y  H  K  S  L  F  K  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11087" stop="10215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQEKDMGLPNPNPMSYNPSQLNQQESSSSAANKFLTAPNRTTNEHENTIFSPNQTLDQHNITQNSDPDPVRQLSTSSASERNITPVRYKECLKNHAANLGGYVLDGCGEFMPSGEEETLEYLKCAACDCHRNFHRKETEDESQTPGVHRNNHRIPNQTPPSLPAVPTQQQHHHKYPHSYPRGHMAPVMMSFGGNTGVAAESSSEDLNMFHGGQGVIQPCNFSASKKRFRTKFSQQQKDRMLEFAEKLGWRIQKQDEQEVHQFCNEVGVKRQVFKVWMHNSKQATKKKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21916" PGL_stop="24270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21916" e_stop="22150"/>
            <exon e_start="22233" e_stop="22295"/>
            <exon e_start="22796" e_stop="22885"/>
            <exon e_start="23143" e_stop="23202"/>
            <exon e_start="23301" e_stop="23366"/>
            <exon e_start="23458" e_stop="23523"/>
            <exon e_start="23647" e_stop="23722"/>
            <exon e_start="24080" e_stop="24144"/>
            <exon e_start="24224" e_stop="24270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="0.984"/>
          <exon-intron don_prob="0.549" acc_prob="0.159" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.351" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21916" e_stop="22150" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22151" i_stop="22232" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="22233" e_stop="22295" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="22296" i_stop="22795" i_length="500"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="22796" e_stop="22885" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.549" acc_prob="0.159">
            <gDNA_intron_boundary i_start="22886" i_stop="23142" i_length="257"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23143" e_stop="23202" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.881">
            <gDNA_intron_boundary i_start="23203" i_stop="23300" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23301" e_stop="23366" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23367" i_stop="23457" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23458" e_stop="23523" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.328" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23524" i_stop="23646" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23647" e_stop="23722" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.980">
            <gDNA_intron_boundary i_start="23723" i_stop="24079" i_length="357"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24080" e_stop="24144" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.351" acc_prob="0.982">
            <gDNA_intron_boundary i_start="24145" i_stop="24223" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.979">
            <gDNA_exon_boundary e_start="24224" e_stop="24270" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21916" stop="22150"/>
              <exon start="22233" stop="22295"/>
              <exon start="22796" stop="22885"/>
              <exon start="23143" stop="23202"/>
              <exon start="23301" stop="23321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21962" stop="22150"/>
              <exon start="22233" stop="22295"/>
              <exon start="22796" stop="22885"/>
              <exon start="23143" stop="23202"/>
              <exon start="23301" stop="23366"/>
              <exon start="23458" stop="23523"/>
              <exon start="23647" stop="23722"/>
              <exon start="24080" stop="24144"/>
              <exon start="24224" stop="24270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21963" stop="22150"/>
              <exon start="22233" stop="22295"/>
              <exon start="22796" stop="22885"/>
              <exon start="23143" stop="23202"/>
              <exon start="23301" stop="23366"/>
              <exon start="23458" stop="23523"/>
              <exon start="23647" stop="23696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCACCTTTATCCTAAACGGAAACAGAAGACACGGAACAACGATGAGTTTCCGAGATGATAACACAGAGGACGGGCTTCGGAAGCCCTTGCTGCATACCGGTAGCTGGTACCGGATGAGCTCCCGCCAGTCCAGTATGATGGGATCCTCAGCCCAAATCCTCCGCGAATCTATCTCCATTTATCTTTGTGTTCTCATTGTTGCATTAGGCCCAATTCAATTTGGATTCACT : TGTGGCTACTCTAACCCTACCCAATCCGAAATCACCAGAGACCTTAGACTTACCATTTCAGAG : TTCTCAATCTTTGGATCTTTAGCAAATGTTGGTGCAATGATTGGCGCAATTGCAAGCGGTCAAATATCAGAATACATTGGACGAAAAGGG : ACTCTAATGATTGCATCAATTCCTAATATTATTGGATGGCTTGCCGTTTCATTTGCCACT : GATGTCTCATTTTTATATATGGGAAGGCTGTTGGAAGGTTTTGGTGTCGGCATTATTTCCTATGTG : GTGCCTGTATATATAGCAGAGATTTCACCTAAAAACATGAGGGGAGTTCTTGGATCCATTAACCAG : CTCTCTGTAACAGTGGGGATTATGCTGGTATATCTGTTGGGATTATTTGTAAGCTGGAGAGTGCTTGCTGTTATAG : GAATGTTACCATGCATGGTTTTGATACCTGGTCTATTTTTTATACCTGAATCTCCTCGTTGGTTG : GCTAAAAATGGGCTGAATGAAGATTTTGAAACTTCTTTGCAAGTTCT</gDNA_template>
            <first_frame> F  F  H  L  Y  P  K  R  K  Q  K  T  R  N  N  D  E  F  P  R  *  *  H  R  G  R  A  S  E  A  L  A  A  Y  R  *  L  V  P  D  E  L  P  P  V  Q  Y  D  G  I  L  S  P  N  P  P  R  I  Y  L  H  L  S  L  C  S  H  C  C  I  R  P  N  S  I  W  I  H   : L  W  L  L  *  P  Y  P  I  R  N  H  Q  R  P  *  T  Y  H  F  R   : V  L  N  L  W  I  F  S  K  C  W  C  N  D  W  R  N  C  K  R  S  N  I  R  I  H  W  T  K  R   : D  S  N  D  C  I  N  S  *  Y  Y  W  M  A  C  R  F  I  C  H   : *  C  L  I  F  I  Y  G  K  A  V  G  R  F  W  C  R  H  Y  F  L  C   : G  A  C  I  Y  S  R  D  F  T  *  K  H  E  G  S  S  W  I  H  *  P   : A  L  C  N  S  G  D  Y  A  G  I  S  V  G  I  I  C  K  L  E  S  A  C  C  Y  R :   N  V  T  M  H  G  F  D  T  W  S  I  F  Y  T  *  I  S  S  L  V   : G  *  K  W  A  E  *  R  F  *  N  F  F  A  S  S </first_frame>
            <second_frame>  F  F  T  F  I  L  N  G  N  R  R  H  G  T  T  M  S  F  R  D  D  N  T  E  D  G  L  R  K  P  L  L  H  T  G  S  W  Y  R  M  S  S  R  Q  S  S  M  M  G  S  S  A  Q  I  L  R  E  S  I  S  I  Y  L  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  S  N  P  T  Q  S  E  I  T  R  D  L  R  L  T  I  S  E  :  F  S  I  F  G  S  L  A  N  V  G  A  M  I  G  A  I  A  S  G  Q  I  S  E  Y  I  G  R  K  G  :  T  L  M  I  A  S  I  P  N  I  I  G  W  L  A  V  S  F  A  T  :  D  V  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  S  P  K  N  M  R  G  V  L  G  S  I  N  Q  :  L  S  V  T  V  G  I  M  L  V  Y  L  L  G  L  F  V  S  W  R  V  L  A  V  I   : G  M  L  P  C  M  V  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  N  G  L  N  E  D  F  E  T  S  L  Q  V   </second_frame>
            <third_frame>   F  S  P  L  S  *  T  E  T  E  D  T  E  Q  R  *  V  S  E  M  I  T  Q  R  T  G  F  G  S  P  C  C  I  P  V  A  G  T  G  *  A  P  A  S  P  V  *  W  D  P  Q  P  K  S  S  A  N  L  S  P  F  I  F  V  F  S  L  L  H  *  A  Q  F  N  L  D  S  L :   V  A  T  L  T  L  P  N  P  K  S  P  E  T  L  D  L  P  F  Q  S :   S  Q  S  L  D  L  *  Q  M  L  V  Q  *  L  A  Q  L  Q  A  V  K  Y  Q  N  T  L  D  E  K  G :   L  *  *  L  H  Q  F  L  I  L  L  D  G  L  P  F  H  L  P  L :   M  S  H  F  Y  I  W  E  G  C  W  K  V  L  V  S  A  L  F  P  M  W :   C  L  Y  I  *  Q  R  F  H  L  K  T  *  G  E  F  L  D  P  L  T  S :   S  L  *  Q  W  G  L  C  W  Y  I  C  W  D  Y  L  *  A  G  E  C  L  L  L  *  :  E  C  Y  H  A  W  F  *  Y  L  V  Y  F  L  Y  L  N  L  L  V  G  W :   L  K  M  G  *  M  K  I  L  K  L  L  C  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21917" stop="22150"/>
                    <exon start="22233" stop="22295"/>
                    <exon start="22796" stop="22885"/>
                    <exon start="23143" stop="23202"/>
                    <exon start="23301" stop="23366"/>
                    <exon start="23458" stop="23523"/>
                    <exon start="23647" stop="23722"/>
                    <exon start="24080" stop="24144"/>
                    <exon start="24224" stop="24268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTFILNGNRRHGTTMSFRDDNTEDGLRKPLLHTGSWYRMSSRQSSMMGSSAQILRESISIYLCVLIVALGPIQFGFTCGYSNPTQSEITRDLRLTISEFSIFGSLANVGAMIGAIASGQISEYIGRKGTLMIASIPNIIGWLAVSFATDVSFLYMGRLLEGFGVGIISYVVPVYIAEISPKNMRGVLGSINQLSVTVGIMLVYLLGLFVSWRVLAVIGMLPCMVLIPGLFFIPESPRWLAKNGLNEDFETSLQV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24671" PGL_stop="27444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24671" e_stop="24739"/>
            <exon e_start="25774" e_stop="25866"/>
            <exon e_start="26082" e_stop="26128"/>
            <exon e_start="26203" e_stop="26265"/>
            <exon e_start="26351" e_stop="26410"/>
            <exon e_start="26536" e_stop="26595"/>
            <exon e_start="26722" e_stop="26781"/>
            <exon e_start="27218" e_stop="27332"/>
            <exon e_start="27411" e_stop="27444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.312" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.073" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.663" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24671" e_stop="24739" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.976">
            <gDNA_intron_boundary i_start="24740" i_stop="25773" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25774" e_stop="25866" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.312" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25867" i_stop="26081" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26082" e_stop="26128" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26129" i_stop="26202" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26203" e_stop="26265" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.900">
            <gDNA_intron_boundary i_start="26266" i_stop="26350" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26351" e_stop="26410" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.073">
            <gDNA_intron_boundary i_start="26411" i_stop="26535" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26536" e_stop="26595" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.572" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26596" i_stop="26721" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26722" e_stop="26781" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26782" i_stop="27217" i_length="436"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="27218" e_stop="27332" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.533" acc_prob="0.663">
            <gDNA_intron_boundary i_start="27333" i_stop="27410" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="27411" e_stop="27444" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24671" stop="24739"/>
              <exon start="25774" stop="25866"/>
              <exon start="26082" stop="26128"/>
              <exon start="26203" stop="26265"/>
              <exon start="26351" stop="26410"/>
              <exon start="26536" stop="26595"/>
              <exon start="26722" stop="26781"/>
              <exon start="27218" stop="27332"/>
              <exon start="27411" stop="27444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24671" stop="24739"/>
              <exon start="25774" stop="25866"/>
              <exon start="26082" stop="26128"/>
              <exon start="26203" stop="26265"/>
              <exon start="26351" stop="26410"/>
              <exon start="26536" stop="26595"/>
              <exon start="26722" stop="26781"/>
              <exon start="27218" stop="27278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCACTCCAGCAACTCAGTGGAGTTAATGGTGTTTTATTCTATTCCAGTAACATCTTCAAATCAGCTG : CAAGAGGTGATGAACTGGAGAATTAGACAACAAAAAGTCGGGACCACATCTGATATCAGGATGAAGTTTTTGTAGTAGATTCAAGTAAAATAG : GAATATCATCCAGTAAAGCAGCAACATTTGGTATTGGGGCTATTCAG : GTCATCGTCACTGGTATCTCTGCATCACTGGTGGACAAGGCGGGACGCAGGCTACTCCTCATT : GTATCCTCATCTGTAATGACTGCTAGCAGCTTGCTTGTTGCAATGTCATTCTTCCTGAAG : GAGTTCACCTCTGAAAATTGGCATTCATTCTTTGCAGTATTGTCTCTGGTTGGACTTGTG : GCCTTGGTGATGGCATTTGGTGTTGGATTGGGATCCATACCTTGGATCATAATGTCTGAG : ATTCTGCCTGTAAGCATCAAAAGTCTGGGTGGCAGTGTTGCAACTTTGGCCAATTGGTTTTCAGCATGGATTGTTACAATGACAGCAAATTTGCTTTTAACTTGGAGTAAAGGAG : GAACATTTGCTATCTATGCACTGGTATCAGCTTT</gDNA_template>
            <first_frame> S  H  S  S  N  S  V  E  L  M  V  F  Y  S  I  P  V  T  S  S  N  Q  L  :  Q  E  V  M  N  W  R  I  R  Q  Q  K  V  G  T  T  S  D  I  R  M  K  F  L  *  *  I  Q  V  K  *  :  E  Y  H  P  V  K  Q  Q  H  L  V  L  G  L  F  R :   S  S  S  L  V  S  L  H  H  W  W  T  R  R  D  A  G  Y  S  S  L :   Y  P  H  L  *  *  L  L  A  A  C  L  L  Q  C  H  S  S  *  R :   S  S  P  L  K  I  G  I  H  S  L  Q  Y  C  L  W  L  D  L  W :   P  W  *  W  H  L  V  L  D  W  D  P  Y  L  G  S  *  C  L  R :   F  C  L  *  A  S  K  V  W  V  A  V  L  Q  L  W  P  I  G  F  Q  H  G  L  L  Q  *  Q  Q  I  C  F  *  L  G  V  K  E  :  E  H  L  L  S  M  H  W  Y  Q  L  </first_frame>
            <second_frame>  R  T  P  A  T  Q  W  S  *  W  C  F  I  L  F  Q  *  H  L  Q  I  S  C :   K  R  *  *  T  G  E  L  D  N  K  K  S  G  P  H  L  I  S  G  *  S  F  C  S  R  F  K  *  N  R :   N  I  I  Q  *  S  S  N  I  W  Y  W  G  Y  S   : G  H  R  H  W  Y  L  C  I  T  G  G  Q  G  G  T  Q  A  T  P  H   : C  I  L  I  C  N  D  C  *  Q  L  A  C  C  N  V  I  L  P  E   : G  V  H  L  *  K  L  A  F  I  L  C  S  I  V  S  G  W  T  C   : G  L  G  D  G  I  W  C  W  I  G  I  H  T  L  D  H  N  V  *   : D  S  A  C  K  H  Q  K  S  G  W  Q  C  C  N  F  G  Q  L  V  F  S  M  D  C  Y  N  D  S  K  F  A  F  N  L  E  *  R  R :   N  I  C  Y  L  C  T  G  I  S  F </second_frame>
            <third_frame>   A  L  Q  Q  L  S  G  V  N  G  V  L  F  Y  S  S  N  I  F  K  S  A   : A  R  G  D  E  L  E  N  *  T  T  K  S  R  D  H  I  *  Y  Q  D  E  V  F  V  V  D  S  S  K  I   : G  I  S  S  S  K  A  A  T  F  G  I  G  A  I  Q  :  V  I  V  T  G  I  S  A  S  L  V  D  K  A  G  R  R  L  L  L  I  :  V  S  S  S  V  M  T  A  S  S  L  L  V  A  M  S  F  F  L  K  :  E  F  T  S  E  N  W  H  S  F  F  A  V  L  S  L  V  G  L  V  :  A  L  V  M  A  F  G  V  G  L  G  S  I  P  W  I  I  M  S  E  :  I  L  P  V  S  I  K  S  L  G  G  S  V  A  T  L  A  N  W  F  S  A  W  I  V  T  M  T  A  N  L  L  L  T  W  S  K  G   : G  T  F  A  I  Y  A  L  V  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25827" stop="25866"/>
                    <exon start="26082" stop="26128"/>
                    <exon start="26203" stop="26265"/>
                    <exon start="26351" stop="26410"/>
                    <exon start="26536" stop="26595"/>
                    <exon start="26722" stop="26781"/>
                    <exon start="27218" stop="27332"/>
                    <exon start="27411" stop="27442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQDEVFVVDSSKIGISSSKAATFGIGAIQVIVTGISASLVDKAGRRLLLIVSSSVMTASSLLVAMSFFLKEFTSENWHSFFAVLSLVGLVALVMAFGVGLGSIPWIIMSEILPVSIKSLGGSVATLANWFSAWIVTMTANLLLTWSKGGTFAIYALVSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30211" PGL_stop="27669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30211" e_stop="29470"/>
            <exon e_start="28463" e_stop="28374"/>
            <exon e_start="28284" e_stop="28217"/>
            <exon e_start="27978" e_stop="27669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.370" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30211" e_stop="29470" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="29469" i_stop="28464" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28463" e_stop="28374" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.758">
            <gDNA_intron_boundary i_start="28373" i_stop="28285" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28284" e_stop="28217" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.370">
            <gDNA_intron_boundary i_start="28216" i_stop="27979" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="27978" e_stop="27669" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30211" stop="29622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30204" stop="29607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30203" stop="29674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30202" stop="29625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30200" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30196" stop="29515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30196" stop="30044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30189" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30183" stop="29529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30174" stop="29549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30123" stop="29555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30030" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29735" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430661" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29665" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29553" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29553" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29553" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29553" stop="29470"/>
              <exon start="28463" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28407" stop="28374"/>
              <exon start="28284" stop="28217"/>
              <exon start="27978" stop="27683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGTACACAAGAAACATTTTTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCTCAATGGTTTGGGATTTTCATCTTCTTCGGAGCTGCTGCTGCCTACCTCTGTTAAGGGTCTTAAGGCCCTGCTAAAAGTGGCTGCTTACAAGAAGCTTTGGTTCCCTGATCGTCTTCATAGAGATTTTCTCGAG : GTAATGTTCACCAACAGAAAGGAAAGAGGAGAGCTGCTAGAAGGGTTGGTGGTGAGCAACAAAGACACAAGTATTCCAAATTTTCCACAG : AGAATACATCTCCTCTGGGGTGAGAATGATCAAATTTTCAATTTGGAGCTTGCTCAGAACATGAAACA : TCAACTGGGTGAGAAGACTACATTTCATGGCATAGACAAGGCAGGGCATCTGGTTCACCTAGAACGACCTTGCGTTTATAACAAGTGTCTCAAGCAGTTCCTTACATCCCTGCATGCAGAAAAAGCCCAAAAGTGAAGGACACTACTGCAAAGTTCACTATCGTAATATCATGTAACTTTTTGTCAATGAAAAGGAAAACAACTATGTGCTTCCTCTGTAATATTAGTTACTATGTAATTTGGGTTCAGAATTTGAAATCATCATCTTAAACAAATATATACAAACATATATTGCAAATTGCAGATGTTA</gDNA_template>
            <first_frame> S  V  H  K  K  H  F  S  C  K  *  K  N  G  E  L  G  *  S  T  K  T  I  V  T  W  P  N  E  I  S  W  N  Q  T  S  *  Y  R  D  R  T  R  H  N  Y  E  F  L  G  S  F  *  N  H  N  S  K  N  E  E  K  Q  K  N  H  N  H  Y  S  S  L  Q  Q  P  I  C  Y  F  P  *  F  H  H  R  T  R  P  E  Q  T  R  G  R  T  N  P  R  L  C  R  R  R  N  S  D  V  A  I  S  N  R  C  I  N  *  K  I  L  C  L  C  T  G  P  T  F  L  R  R  I  S  Y  G  *  L  R  *  I  A  G  F  S  S  R  V  F  G  *  R  A  E  E  I  R  R  G  K  M  R  S  G  W  I  *  L  W  R  N  G  G  V  *  D  G  G  N  V  S  R  F  S  *  G  V  G  G  V  W  I  D  I  S  D  D  *  F  H  *  H  Y  H  A  Q  W  F  G  I  F  I  F  F  G  A  A  A  A  Y  L  C  *  G  S  *  G  P  A  K  S  G  C  L  Q  E  A  L  V  P  *  S  S  S  *  R  F  S  R   : G  N  V  H  Q  Q  K  G  K  R  R  A  A  R  R  V  G  G  E  Q  Q  R  H  K  Y  S  K  F  S  T   : E  N  T  S  P  L  G  *  E  *  S  N  F  Q  F  G  A  C  S  E  H  E  T  :  S  T  G  *  E  D  Y  I  S  W  H  R  Q  G  R  A  S  G  S  P  R  T  T  L  R  L  *  Q  V  S  Q  A  V  P  Y  I  P  A  C  R  K  S  P  K  V  K  D  T  T  A  K  F  T  I  V  I  S  C  N  F  L  S  M  K  R  K  T  T  M  C  F  L  C  N  I  S  Y  Y  V  I  W  V  Q  N  L  K  S  S  S  *  T  N  I  Y  K  H  I  L  Q  I  A  D  V  </first_frame>
            <second_frame>  P  Y  T  R  N  I  F  L  A  N  K  K  M  V  N  L  V  E  A  Q  K  P  L  L  H  G  L  M  K  L  A  G  I  R  P  H  S  I  E  I  E  P  G  T  I  M  N  F  W  V  P  S  E  T  I  I  Q  K  T  K  K  N  K  K  I  T  T  T  T  P  L  S  N  N  Q  Y  A  I  S  P  D  S  T  T  E  P  D  P  N  K  P  V  V  V  L  I  H  G  F  A  G  E  G  I  V  T  W  Q  F  Q  I  G  A  L  T  K  K  Y  S  V  Y  V  P  D  L  L  F  F  G  G  S  V  T  D  S  S  D  R  S  P  G  F  Q  A  E  C  L  G  K  G  L  R  K  L  G  V  E  K  C  V  V  V  G  F  S  Y  G  G  M  V  A  F  K  M  A  E  M  F  P  D  L  V  E  A  L  V  V  S  G  S  I  L  A  M  T  D  S  I  S  T  T  T  L  N  G  L  G  F  S  S  S  S  E  L  L  L  P  T  S  V  K  G  L  K  A  L  L  K  V  A  A  Y  K  K  L  W  F  P  D  R  L  H  R  D  F  L  E  :  V  M  F  T  N  R  K  E  R  G  E  L  L  E  G  L  V  V  S  N  K  D  T  S  I  P  N  F  P  Q  :  R  I  H  L  L  W  G  E  N  D  Q  I  F  N  L  E  L  A  Q  N  M  K  H :   Q  L  G  E  K  T  T  F  H  G  I  D  K  A  G  H  L  V  H  L  E  R  P  C  V  Y  N  K  C  L  K  Q  F  L  T  S  L  H  A  E  K  A  Q  K  *  R  T  L  L  Q  S  S  L  S  *  Y  H  V  T  F  C  Q  *  K  G  K  Q  L  C  A  S  S  V  I  L  V  T  M  *  F  G  F  R  I  *  N  H  H  L  K  Q  I  Y  T  N  I  Y  C  K  L  Q  M  L </second_frame>
            <third_frame>   R  T  Q  E  T  F  F  L  Q  I  K  K  W  *  T  W  L  K  H  K  N  H  C  Y  M  A  *  *  N  *  L  E  S  D  L  I  V  *  R  *  N  Q  A  Q  L  *  I  F  G  F  L  L  K  P  *  F  K  K  R  R  K  T  K  K  S  Q  P  L  L  L  S  P  T  T  N  M  L  F  P  L  I  P  P  P  N  P  T  R  T  N  P  W  S  Y  *  S  T  A  L  P  A  K  E  *  *  R  G  N  F  K  S  V  H  *  L  K  N  T  L  F  M  Y  R  T  Y  F  S  S  A  D  Q  L  R  I  A  P  I  D  R  R  V  F  K  Q  S  V  W  V  K  G  *  G  N  *  A  W  K  N  A  *  W  L  D  L  V  M  E  E  W  W  R  L  R  W  R  K  C  F  Q  I  *  L  R  R  W  W  C  L  D  R  Y  *  R  *  L  I  P  L  A  L  P  R  S  M  V  W  D  F  H  L  L  R  S  C  C  C  L  P  L  L  R  V  L  R  P  C  *  K  W  L  L  T  R  S  F  G  S  L  I  V  F  I  E  I  F  S  R :   *  C  S  P  T  E  R  K  E  E  S  C  *  K  G  W  W  *  A  T  K  T  Q  V  F  Q  I  F  H  R :   E  Y  I  S  S  G  V  R  M  I  K  F  S  I  W  S  L  L  R  T  *  N   : I  N  W  V  R  R  L  H  F  M  A  *  T  R  Q  G  I  W  F  T  *  N  D  L  A  F  I  T  S  V  S  S  S  S  L  H  P  C  M  Q  K  K  P  K  S  E  G  H  Y  C  K  V  H  Y  R  N  I  M  *  L  F  V  N  E  K  E  N  N  Y  V  L  P  L  *  Y  *  L  L  C  N  L  G  S  E  F  E  I  I  I  L  N  K  Y  I  Q  T  Y  I  A  N  C  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30210" stop="29470"/>
                    <exon start="28463" stop="28374"/>
                    <exon start="28284" stop="28217"/>
                    <exon start="27978" stop="27843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYTRNIFLANKKMVNLVEAQKPLLHGLMKLAGIRPHSIEIEPGTIMNFWVPSETIIQKTKKNKKITTTTPLSNNQYAISPDSTTEPDPNKPVVVLIHGFAGEGIVTWQFQIGALTKKYSVYVPDLLFFGGSVTDSSDRSPGFQAECLGKGLRKLGVEKCVVVGFSYGGMVAFKMAEMFPDLVEALVVSGSILAMTDSISTTTLNGLGFSSSSELLLPTSVKGLKALLKVAAYKKLWFPDRLHRDFLEVMFTNRKERGELLEGLVVSNKDTSIPNFPQRIHLLWGENDQIFNLELAQNMKHQLGEKTTFHGIDKAGHLVHLERPCVYNKCLKQFLTSLHAEKAQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49245" PGL_stop="50227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49245" e_stop="50227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49245" e_stop="50227" e_length="983"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49245" stop="49681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49497" stop="50088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49503" stop="50227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49503" stop="50086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49503" stop="50040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49503" stop="50000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49510" stop="50089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTGATTGATAATTATTTAAACAAAAAAATCAATCCTTTTGGTTTTAAATTCGTTATTACCATCTGGCGTCCTTCAAATTCTTTGGCAACTTGACCATTTTATATTCTATATTTATGGTAATACTACTTTACCATTTATATTACCAAAAAAAAATAAAAAATAAAAATTTGTTGTTAGGGCAAGACTCCGCAGACTGGGTCGGATAAACCCCTCAAGAACCCCGGAATCGCCGCCGCCTGTCACATGACTTCTCCAATTGTCGAAATCAAAGGAGACATTGACACGGACGACCTCAATCCGTTCACTATGATTCTCCCACAAGATGGCCATGACAATGACGCCTCTCCGCAGCAGCAAAAACAGCAACTCCATTTCCTCCAATCCATTAACTCAAACGTAGTCATCAGACAACTTCCATCTGAAGGCCTTTCTTTCCAACTCTGGCCTGCCGCTACTATTCTCGTCACTCTCCTTGATAACACTCGTAACGGCGAATCAACTCCGTTTTCCGATTTGTTCAAACGTCAGGAAAAAGGGGTTTCGCTACCCCTTCGTATTCTCGAACTGGGTTCAGGAACAGGTGTTGTTGGGATAGCTGCTGCTGCTATTCTTGGTGCTAAGGTTACTGTCACTGACCTTCCTCATGTGCTGCCTAATATACAGTTCAATGTTGATGCAAACTCACAAGTTTTGGAACAACAGAGTGGGGGTGTTGATGTTGCGGCGCTTAGCTGGGGGGATAACCAGCATATGGAGGCTGTTGGTAGAGATTATGACCTGATTTTGGGATCTGATGTGGTGTACCATGATCACCTCTATGATCCTCTGATTAACACGTTGAGGTTCTTCCTGTTAGGAGGTGGAAAGAAGATAGCTTTTGTTATGGCTCATTTGAGAAGATGGAAGAAGGAATCTGCTTTCTTCAAGAGAGCCAAGAAGCTTTTTGATGTCCAAATCATACATACCGAGCCTCCGCCCG</gDNA_template>
            <first_frame> L  I  D  *  *  L  F  K  Q  K  N  Q  S  F  W  F  *  I  R  Y  Y  H  L  A  S  F  K  F  F  G  N  L  T  I  L  Y  S  I  F  M  V  I  L  L  Y  H  L  Y  Y  Q  K  K  I  K  N  K  N  L  L  L  G  Q  D  S  A  D  W  V  G  *  T  P  Q  E  P  R  N  R  R  R  L  S  H  D  F  S  N  C  R  N  Q  R  R  H  *  H  G  R  P  Q  S  V  H  Y  D  S  P  T  R  W  P  *  Q  *  R  L  S  A  A  A  K  T  A  T  P  F  P  P  I  H  *  L  K  R  S  H  Q  T  T  S  I  *  R  P  F  F  P  T  L  A  C  R  Y  Y  S  R  H  S  P  *  *  H  S  *  R  R  I  N  S  V  F  R  F  V  Q  T  S  G  K  R  G  F  A  T  P  S  Y  S  R  T  G  F  R  N  R  C  C  W  D  S  C  C  C  Y  S  W  C  *  G  Y  C  H  *  P  S  S  C  A  A  *  Y  T  V  Q  C  *  C  K  L  T  S  F  G  T  T  E  W  G  C  *  C  C  G  A  *  L  G  G  *  P  A  Y  G  G  C  W  *  R  L  *  P  D  F  G  I  *  C  G  V  P  *  S  P  L  *  S  S  D  *  H  V  E  V  L  P  V  R  R  W  K  E  D  S  F  C  Y  G  S  F  E  K  M  E  E  G  I  C  F  L  Q  E  S  Q  E  A  F  *  C  P  N  H  T  Y  R  A  S  A   </first_frame>
            <second_frame>  *  L  I  D  N  Y  L  N  K  K  I  N  P  F  G  F  K  F  V  I  T  I  W  R  P  S  N  S  L  A  T  *  P  F  Y  I  L  Y  L  W  *  Y  Y  F  T  I  Y  I  T  K  K  K  *  K  I  K  I  C  C  *  G  K  T  P  Q  T  G  S  D  K  P  L  K  N  P  G  I  A  A  A  C  H  M  T  S  P  I  V  E  I  K  G  D  I  D  T  D  D  L  N  P  F  T  M  I  L  P  Q  D  G  H  D  N  D  A  S  P  Q  Q  Q  K  Q  Q  L  H  F  L  Q  S  I  N  S  N  V  V  I  R  Q  L  P  S  E  G  L  S  F  Q  L  W  P  A  A  T  I  L  V  T  L  L  D  N  T  R  N  G  E  S  T  P  F  S  D  L  F  K  R  Q  E  K  G  V  S  L  P  L  R  I  L  E  L  G  S  G  T  G  V  V  G  I  A  A  A  A  I  L  G  A  K  V  T  V  T  D  L  P  H  V  L  P  N  I  Q  F  N  V  D  A  N  S  Q  V  L  E  Q  Q  S  G  G  V  D  V  A  A  L  S  W  G  D  N  Q  H  M  E  A  V  G  R  D  Y  D  L  I  L  G  S  D  V  V  Y  H  D  H  L  Y  D  P  L  I  N  T  L  R  F  F  L  L  G  G  G  K  K  I  A  F  V  M  A  H  L  R  R  W  K  K  E  S  A  F  F  K  R  A  K  K  L  F  D  V  Q  I  I  H  T  E  P  P  P  </second_frame>
            <third_frame>   N  *  L  I  I  I  *  T  K  K  S  I  L  L  V  L  N  S  L  L  P  S  G  V  L  Q  I  L  W  Q  L  D  H  F  I  F  Y  I  Y  G  N  T  T  L  P  F  I  L  P  K  K  N  K  K  *  K  F  V  V  R  A  R  L  R  R  L  G  R  I  N  P  S  R  T  P  E  S  P  P  P  V  T  *  L  L  Q  L  S  K  S  K  E  T  L  T  R  T  T  S  I  R  S  L  *  F  S  H  K  M  A  M  T  M  T  P  L  R  S  S  K  N  S  N  S  I  S  S  N  P  L  T  Q  T  *  S  S  D  N  F  H  L  K  A  F  L  S  N  S  G  L  P  L  L  F  S  S  L  S  L  I  T  L  V  T  A  N  Q  L  R  F  P  I  C  S  N  V  R  K  K  G  F  R  Y  P  F  V  F  S  N  W  V  Q  E  Q  V  L  L  G  *  L  L  L  L  F  L  V  L  R  L  L  S  L  T  F  L  M  C  C  L  I  Y  S  S  M  L  M  Q  T  H  K  F  W  N  N  R  V  G  V  L  M  L  R  R  L  A  G  G  I  T  S  I  W  R  L  L  V  E  I  M  T  *  F  W  D  L  M  W  C  T  M  I  T  S  M  I  L  *  L  T  R  *  G  S  S  C  *  E  V  E  R  R  *  L  L  L  W  L  I  *  E  D  G  R  R  N  L  L  S  S  R  E  P  R  S  F  L  M  S  K  S  Y  I  P  S  L  R  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49426" stop="50226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKTPQTGSDKPLKNPGIAAACHMTSPIVEIKGDIDTDDLNPFTMILPQDGHDNDASPQQQKQQLHFLQSINSNVVIRQLPSEGLSFQLWPAATILVTLLDNTRNGESTPFSDLFKRQEKGVSLPLRILELGSGTGVVGIAAAAILGAKVTVTDLPHVLPNIQFNVDANSQVLEQQSGGVDVAALSWGDNQHMEAVGRDYDLILGSDVVYHDHLYDPLINTLRFFLLGGGKKIAFVMAHLRRWKKESAFFKRAKKLFDVQIIHTEPPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50887" PGL_stop="49848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50887" e_stop="50394"/>
            <exon e_start="50355" e_stop="49848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="50887" e_stop="50394" e_length="494"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50393" i_stop="50356" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="50355" e_stop="49848" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50887" stop="50412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50486" stop="50394"/>
              <exon start="50355" stop="49848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGAAGGCAGTTGGAAGAGGCTCTCAGTTGAGGAAAAGATGATAATGAGAAGTTGGATTTGGGATTAACTGAATGTTTTGGGTTGCTATTGGTGGCATTGATCCCATTTCTTCATGCTAGCACCATTTAACATGTTCTGCAGCTCAGTTTTAAGTTGCCATTTATCCTGAAAGTAAGACACTTCTGCTCTCAAGTCACAAGGGCTGCAATGGGTTGCAAATGGTACAAGTGTGCAAGCCTAGAATGACAGTGCTCCTCAAGAAGTAACAAGTTATACACATTTTTTTTGCAGATTATGGCCAATGTAGAAGCGAATACAATTGATTTGATGTTGTGTATTTTTTCTGTATTAAAATGGATGAGAGCTCTTAACTTGAGGTGTTTATAACTTAATTTTGAGTAGAGTTTTGTTACAACTCAAGGTTGTGAATGTTCAATTAAAATGCAATAATACACAACTTTCTTTGTTGATTGTATTTCCACGTAAAGCAAA : CCCCATTGTTATACATGACATGACAATAAGATTCAGACTGACATCCCACCAACATCTAGCCTTGATTGACTATAGTGGCTATCTTTTCCCGGTGAAAAGGTATACAACCACCCCAATCCTAGACCCATCGGGCGGAGGCTCGGTATGTATGATTTGGACATCAAAAAGCTTCTTGGCTCTCTTGAAGAAAGCAGATTCCTTCTTCCATCTTCTCAAATGAGCCATAACAAAAGCTATCTTCTTTCCACCTCCTAACAGGAAGAACCTCAACGTGTTAATCAGAGGATCATAGAGGTGATCATGGTACACCACATCAGATCCCAAAATCAGGTCATAATCTCTACCAACAGCCTCCATATGCTGGTTATCCCCCCAGCTAAGCGCCGCAACATCAACACCCCCACTCTGTTGTTCCAAAACTTGTGAGTTTGCATCAACATTGAACTGTATATTAGGCAGCACATGAGGAAGGTCAGTGACAGTAACCTTAGCACCAAGAATAGCAGCA</gDNA_template>
            <first_frame> Y  E  G  S  W  K  R  L  S  V  E  E  K  M  I  M  R  S  W  I  W  D  *  L  N  V  L  G  C  Y  W  W  H  *  S  H  F  F  M  L  A  P  F  N  M  F  C  S  S  V  L  S  C  H  L  S  *  K  *  D  T  S  A  L  K  S  Q  G  L  Q  W  V  A  N  G  T  S  V  Q  A  *  N  D  S  A  P  Q  E  V  T  S  Y  T  H  F  F  C  R  L  W  P  M  *  K  R  I  Q  L  I  *  C  C  V  F  F  L  Y  *  N  G  *  E  L  L  T  *  G  V  Y  N  L  I  L  S  R  V  L  L  Q  L  K  V  V  N  V  Q  L  K  C  N  N  T  Q  L  S  L  L  I  V  F  P  R  K  A  N :   P  I  V  I  H  D  M  T  I  R  F  R  L  T  S  H  Q  H  L  A  L  I  D  Y  S  G  Y  L  F  P  V  K  R  Y  T  T  T  P  I  L  D  P  S  G  G  G  S  V  C  M  I  W  T  S  K  S  F  L  A  L  L  K  K  A  D  S  F  F  H  L  L  K  *  A  I  T  K  A  I  F  F  P  P  P  N  R  K  N  L  N  V  L  I  R  G  S  *  R  *  S  W  Y  T  T  S  D  P  K  I  R  S  *  S  L  P  T  A  S  I  C  W  L  S  P  Q  L  S  A  A  T  S  T  P  P  L  C  C  S  K  T  C  E  F  A  S  T  L  N  C  I  L  G  S  T  *  G  R  S  V  T  V  T  L  A  P  R  I  A  A </first_frame>
            <second_frame>  M  K  A  V  G  R  G  S  Q  L  R  K  R  *  *  *  E  V  G  F  G  I  N  *  M  F  W  V  A  I  G  G  I  D  P  I  S  S  C  *  H  H  L  T  C  S  A  A  Q  F  *  V  A  I  Y  P  E  S  K  T  L  L  L  S  S  H  K  G  C  N  G  L  Q  M  V  Q  V  C  K  P  R  M  T  V  L  L  K  K  *  Q  V  I  H  I  F  F  A  D  Y  G  Q  C  R  S  E  Y  N  *  F  D  V  V  Y  F  F  C  I  K  M  D  E  S  S  *  L  E  V  F  I  T  *  F  *  V  E  F  C  Y  N  S  R  L  *  M  F  N  *  N  A  I  I  H  N  F  L  C  *  L  Y  F  H  V  K  Q   : T  P  L  L  Y  M  T  *  Q  *  D  S  D  *  H  P  T  N  I  *  P  *  L  T  I  V  A  I  F  S  R  *  K  G  I  Q  P  P  Q  S  *  T  H  R  A  E  A  R  Y  V  *  F  G  H  Q  K  A  S  W  L  S  *  R  K  Q  I  P  S  S  I  F  S  N  E  P  *  Q  K  L  S  S  F  H  L  L  T  G  R  T  S  T  C  *  S  E  D  H  R  G  D  H  G  T  P  H  Q  I  P  K  S  G  H  N  L  Y  Q  Q  P  P  Y  A  G  Y  P  P  S  *  A  P  Q  H  Q  H  P  H  S  V  V  P  K  L  V  S  L  H  Q  H  *  T  V  Y  *  A  A  H  E  E  G  Q  *  Q  *  P  *  H  Q  E  *  Q   </second_frame>
            <third_frame>   *  R  Q  L  E  E  A  L  S  *  G  K  D  D  N  E  K  L  D  L  G  L  T  E  C  F  G  L  L  L  V  A  L  I  P  F  L  H  A  S  T  I  *  H  V  L  Q  L  S  F  K  L  P  F  I  L  K  V  R  H  F  C  S  Q  V  T  R  A  A  M  G  C  K  W  Y  K  C  A  S  L  E  *  Q  C  S  S  R  S  N  K  L  Y  T  F  F  L  Q  I  M  A  N  V  E  A  N  T  I  D  L  M  L  C  I  F  S  V  L  K  W  M  R  A  L  N  L  R  C  L  *  L  N  F  E  *  S  F  V  T  T  Q  G  C  E  C  S  I  K  M  Q  *  Y  T  T  F  F  V  D  C  I  S  T  *  S  K  :  P  H  C  Y  T  *  H  D  N  K  I  Q  T  D  I  P  P  T  S  S  L  D  *  L  *  W  L  S  F  P  G  E  K  V  Y  N  H  P  N  P  R  P  I  G  R  R  L  G  M  Y  D  L  D  I  K  K  L  L  G  S  L  E  E  S  R  F  L  L  P  S  S  Q  M  S  H  N  K  S  Y  L  L  S  T  S  *  Q  E  E  P  Q  R  V  N  Q  R  I  I  E  V  I  M  V  H  H  I  R  S  Q  N  Q  V  I  I  S  T  N  S  L  H  M  L  V  I  P  P  A  K  R  R  N  I  N  T  P  T  L  L  F  Q  N  L  *  V  C  I  N  I  E  L  Y  I  R  Q  H  M  R  K  V  S  D  S  N  L  S  T  K  N  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50509" stop="50394"/>
                    <exon start="50355" stop="50136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYNLILSRVLLQLKVVNVQLKCNNTQLSLLIVFPRKANPIVIHDMTIRFRLTSHQHLALIDYSGYLFPVKRYTTTPILDPSGGGSVCMIWTSKSFLALLKKADSFFHLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50260" PGL_stop="50457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50260" e_stop="50457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50260" e_stop="50457" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50260" stop="50457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50260" stop="50457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50260" stop="50448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50261" stop="50457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACCGGGAAAAGATAGCCACTATAGTCAATCAAGGCTAGATGTTGGTGGGATGTCAGTCTGAATCTTATTGTCATGTCATGTATAACAATGGGGATGGGGTTAGCCCAACAAAGAAGTAAAAAACTACTGTATTTGCTTTACGTGGAAATACAATCAACAAAGAAAGTTGTGTATTATTGCATTTTAATTGAACAT</gDNA_template>
            <first_frame> F  T  G  K  R  *  P  L  *  S  I  K  A  R  C  W  W  D  V  S  L  N  L  I  V  M  S  C  I  T  M  G  M  G  L  A  Q  Q  R  S  K  K  L  L  Y  L  L  Y  V  E  I  Q  S  T  K  K  V  V  Y  Y  C  I  L  I  E  H </first_frame>
            <second_frame>  S  P  G  K  D  S  H  Y  S  Q  S  R  L  D  V  G  G  M  S  V  *  I  L  L  S  C  H  V  *  Q  W  G  W  G  *  P  N  K  E  V  K  N  Y  C  I  C  F  T  W  K  Y  N  Q  Q  R  K  L  C  I  I  A  F  *  L  N   </second_frame>
            <third_frame>   H  R  E  K  I  A  T  I  V  N  Q  G  *  M  L  V  G  C  Q  S  E  S  Y  C  H  V  M  Y  N  N  G  D  G  V  S  P  T  K  K  *  K  T  T  V  F  A  L  R  G  N  T  I  N  K  E  S  C  V  L  L  H  F  N  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0074A14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53550" PGL_stop="52636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53550" e_stop="53434"/>
            <exon e_start="52938" e_stop="52636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.940"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="53550" e_stop="53434" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53433" i_stop="52939" i_length="495"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="52938" e_stop="52636" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53550" stop="53434"/>
              <exon start="52938" stop="52636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTCCAGAGGTGTTGCTGAAGAGACTTCCACCAGATGCTCTGTATGAAGAACGTGCAATTCTTTTGGGGAAAATGAATAAACATGAACTTGCCCTGTCTATTTATGTGCACAAG : CTTCATGCTCCCGAACTTGCACTGTCCTATTGTGACCGGGTGTACGATTCAGGACTTCAACAACATTCAGCAAAATCTTACGGAAACATTTACCTGACTCTACTGCAAATCTATCTAAATCCTAGGAAGACAACAAAAAAATTTGAGAAGAAAATTACTAATCTGGTATCAGCTCAGAGCCCTAGGATTCCAAAAGTTGGTTTAGGAACTACAGGAAAGGTAAAAGGAGGCCGCTCCAAGAAAATTGCTGAAATTGGGGGCGCTGAGGACACTCGATTCAGTCTAAGCGGCACAGACAGTGGT</gDNA_template>
            <first_frame> Y  T  P  E  V  L  L  K  R  L  P  P  D  A  L  Y  E  E  R  A  I  L  L  G  K  M  N  K  H  E  L  A  L  S  I  Y  V  H  K  :  L  H  A  P  E  L  A  L  S  Y  C  D  R  V  Y  D  S  G  L  Q  Q  H  S  A  K  S  Y  G  N  I  Y  L  T  L  L  Q  I  Y  L  N  P  R  K  T  T  K  K  F  E  K  K  I  T  N  L  V  S  A  Q  S  P  R  I  P  K  V  G  L  G  T  T  G  K  V  K  G  G  R  S  K  K  I  A  E  I  G  G  A  E  D  T  R  F  S  L  S  G  T  D  S  G </first_frame>
            <second_frame>  I  L  Q  R  C  C  *  R  D  F  H  Q  M  L  C  M  K  N  V  Q  F  F  W  G  K  *  I  N  M  N  L  P  C  L  F  M  C  T  S :   F  M  L  P  N  L  H  C  P  I  V  T  G  C  T  I  Q  D  F  N  N  I  Q  Q  N  L  T  E  T  F  T  *  L  Y  C  K  S  I  *  I  L  G  R  Q  Q  K  N  L  R  R  K  L  L  I  W  Y  Q  L  R  A  L  G  F  Q  K  L  V  *  E  L  Q  E  R  *  K  E  A  A  P  R  K  L  L  K  L  G  A  L  R  T  L  D  S  V  *  A  A  Q  T  V   </second_frame>
            <third_frame>   Y  S  R  G  V  A  E  E  T  S  T  R  C  S  V  *  R  T  C  N  S  F  G  E  N  E  *  T  *  T  C  P  V  Y  L  C  A  Q   : A  S  C  S  R  T  C  T  V  L  L  *  P  G  V  R  F  R  T  S  T  T  F  S  K  I  L  R  K  H  L  P  D  S  T  A  N  L  S  K  S  *  E  D  N  K  K  I  *  E  E  N  Y  *  S  G  I  S  S  E  P  *  D  S  K  S  W  F  R  N  Y  R  K  G  K  R  R  P  L  Q  E  N  C  *  N  W  G  R  *  G  H  S  I  Q  S  K  R  H  R  Q  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53550" stop="53434"/>
                    <exon start="52938" stop="52636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTPEVLLKRLPPDALYEERAILLGKMNKHELALSIYVHKLHAPELALSYCDRVYDSGLQQHSAKSYGNIYLTLLQIYLNPRKTTKKFEKKITNLVSAQSPRIPKVGLGTTGKVKGGRSKKIAEIGGAEDTRFSLSGTDSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="54436" PGL_stop="53571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54436" e_stop="53571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="54436" e_stop="53571" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54436" stop="53571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGAATCTCTCTTTAAGTATTTTATGGAACAATGCTTCGCCAAAACAGTTATCTGATTATTTTTTCTTTTTTGGGCAGCCCCTTTGTGCAACTGACCCCATGCTTGTCCTGGAGTTCTCATTGCCTGTTCTTGAAAGCTGTCCGATGCAAACCATTGAGCTATTTTTGTCTGGTAACATTCCAGCAGACTTGGTGAATTCTTACTTAAAGCAGCATGCTCCAGACATGCAGGCAACATATCTAGAACTCATGCTTGCCATGAATGAAAATAGTATCTCAGGGAATCTGCAGAATGAAATGGTAGAGGCACTTGTCCATCTGTCTGGTTTTATGTAGCTTCTCTCTGTCTTTCCCCTTTTGTACCTTTTATTTCATAAAAACCATTAAAGCAACATTGCTTCAAGTGAAGCCAGAAAGCTGAGGCTTATAGTTCTCCTCGTGATATGGGCATATGTCTAATGAAGCTCACATGTTTAGGCTTCTTTGAACTCAAATCTTTGAGAAACCCTGAGTGACAAAATTTAGGAACAATTATCTTGCCTCCTACTGTTTCTCAGGGATAAAGATTTTGCTCGGACTCTTCAAAATGGGTGCGTGTTGGATCCTCCAAAAGTAGTGTATTTTTGGAGGATCGAACACAGTTGGAGTAACATTTTTGGAGAGTCCGCTCAACAGTCTTTTGTGCTTCAATCCATGCGTCTGACAAAATGTTGAGTGTTTATGTGATTATGATAAATTCGCTTAGCAACTTGTGGCAGGTGCAAATTTATCTCTCAGAAGTGCTTGATTTTCATGCTGAACATAATTCACAGCAAAAGTGGGATGAGAAAACATGTCCTCCACCAAGGAAAAAGCTACTGTCTG</gDNA_template>
            <first_frame> E  *  I  S  L  *  V  F  Y  G  T  M  L  R  Q  N  S  Y  L  I  I  F  S  F  L  G  S  P  F  V  Q  L  T  P  C  L  S  W  S  S  H  C  L  F  L  K  A  V  R  C  K  P  L  S  Y  F  C  L  V  T  F  Q  Q  T  W  *  I  L  T  *  S  S  M  L  Q  T  C  R  Q  H  I  *  N  S  C  L  P  *  M  K  I  V  S  Q  G  I  C  R  M  K  W  *  R  H  L  S  I  C  L  V  L  C  S  F  S  L  S  F  P  F  C  T  F  Y  F  I  K  T  I  K  A  T  L  L  Q  V  K  P  E  S  *  G  L  *  F  S  S  *  Y  G  H  M  S  N  E  A  H  M  F  R  L  L  *  T  Q  I  F  E  K  P  *  V  T  K  F  R  N  N  Y  L  A  S  Y  C  F  S  G  I  K  I  L  L  G  L  F  K  M  G  A  C  W  I  L  Q  K  *  C  I  F  G  G  S  N  T  V  G  V  T  F  L  E  S  P  L  N  S  L  L  C  F  N  P  C  V  *  Q  N  V  E  C  L  C  D  Y  D  K  F  A  *  Q  L  V  A  G  A  N  L  S  L  R  S  A  *  F  S  C  *  T  *  F  T  A  K  V  G  *  E  N  M  S  S  T  K  E  K  A  T  V   </first_frame>
            <second_frame>  N  E  S  L  F  K  Y  F  M  E  Q  C  F  A  K  T  V  I  *  L  F  F  L  F  W  A  A  P  L  C  N  *  P  H  A  C  P  G  V  L  I  A  C  S  *  K  L  S  D  A  N  H  *  A  I  F  V  W  *  H  S  S  R  L  G  E  F  L  L  K  A  A  C  S  R  H  A  G  N  I  S  R  T  H  A  C  H  E  *  K  *  Y  L  R  E  S  A  E  *  N  G  R  G  T  C  P  S  V  W  F  Y  V  A  S  L  C  L  S  P  F  V  P  F  I  S  *  K  P  L  K  Q  H  C  F  K  *  S  Q  K  A  E  A  Y  S  S  P  R  D  M  G  I  C  L  M  K  L  T  C  L  G  F  F  E  L  K  S  L  R  N  P  E  *  Q  N  L  G  T  I  I  L  P  P  T  V  S  Q  G  *  R  F  C  S  D  S  S  K  W  V  R  V  G  S  S  K  S  S  V  F  L  E  D  R  T  Q  L  E  *  H  F  W  R  V  R  S  T  V  F  C  A  S  I  H  A  S  D  K  M  L  S  V  Y  V  I  M  I  N  S  L  S  N  L  W  Q  V  Q  I  Y  L  S  E  V  L  D  F  H  A  E  H  N  S  Q  Q  K  W  D  E  K  T  C  P  P  P  R  K  K  L  L  S  </second_frame>
            <third_frame>   M  N  L  S  L  S  I  L  W  N  N  A  S  P  K  Q  L  S  D  Y  F  F  F  F  G  Q  P  L  C  A  T  D  P  M  L  V  L  E  F  S  L  P  V  L  E  S  C  P  M  Q  T  I  E  L  F  L  S  G  N  I  P  A  D  L  V  N  S  Y  L  K  Q  H  A  P  D  M  Q  A  T  Y  L  E  L  M  L  A  M  N  E  N  S  I  S  G  N  L  Q  N  E  M  V  E  A  L  V  H  L  S  G  F  M  *  L  L  S  V  F  P  L  L  Y  L  L  F  H  K  N  H  *  S  N  I  A  S  S  E  A  R  K  L  R  L  I  V  L  L  V  I  W  A  Y  V  *  *  S  S  H  V  *  A  S  L  N  S  N  L  *  E  T  L  S  D  K  I  *  E  Q  L  S  C  L  L  L  F  L  R  D  K  D  F  A  R  T  L  Q  N  G  C  V  L  D  P  P  K  V  V  Y  F  W  R  I  E  H  S  W  S  N  I  F  G  E  S  A  Q  Q  S  F  V  L  Q  S  M  R  L  T  K  C  *  V  F  M  *  L  *  *  I  R  L  A  T  C  G  R  C  K  F  I  S  Q  K  C  L  I  F  M  L  N  I  I  H  S  K  S  G  M  R  K  H  V  L  H  Q  G  K  S  Y  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54434" stop="54099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNLSLSILWNNASPKQLSDYFFFFGQPLCATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPDMQATYLELMLAMNENSISGNLQNEMVEALVHLSGFM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53784" stop="53572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFWRVRSTVFCASIHASDKMLSVYVIMINSLSNLWQVQIYLSEVLDFHAEHNSQQKWDEKTCPPPRKKLLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="57380" PGL_stop="54812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57380" e_stop="57268"/>
            <exon e_start="55961" e_stop="55535"/>
            <exon e_start="54998" e_stop="54812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.618" acc_prob="0.996" e_score="0.956"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.909"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="57380" e_stop="57268" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.618" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57267" i_stop="55962" i_length="1306"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="55961" e_stop="55535" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55534" i_stop="54999" i_length="536"/>
          </intron>
          <exon e_serial="3" e_score="0.909">
            <gDNA_exon_boundary e_start="54998" e_stop="54812" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57380" stop="57268"/>
              <exon start="55961" stop="55535"/>
              <exon start="54998" stop="54812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGTACAACTAACAGCATCTGGAAACTTTGAGGAGGCCTTGGCTTTGTGCAAATTGCTACCACCAGAAGATTCCAGTCTTAGATCTTCAAAGGAGCAGTCAATTCATATGAG : ATATGCGCACTTTCTATTTGAAAATGGGAGCTATGAAGAAGCAATGGAACATTTTCTGGCATCTCAAGTTGAAATCACTTATGTGCTCGCCTTATATCCATCCATTATTGTTCCAAAATCATCTTGCATACCTGAACCACAGAAATTTGCAGATGTTGCAGATGCACCATATCTCTCCCGAGGCTCTTCTGGTCTGTCAGATGATCTAGATTCTCCGTCTTCGGATGTATTTGAATCTGATGAAATGGATATAGAGTCCAAGAAAATGAGCCACAACACTTTGATGGCTCTGATTAAGTATTTGCAGAAAAAGAGATACAGTGTCATTGAGAAAGCAACAACTGAGGGAACTGAAGAAGTGGTTTCAGATGCTGTTGGAGATAATTTCATTTCTTATGGAACTGACCGGTCCAAAAAACCAACCAAG : GGCAGAATTCATATTCCTATCACTTCCATCGCTAGGGACATGGCTGCAATACTGGACACTGCACTTCTTCAAGCTCTGTTTTTAACTGGACAGTCCTCTGCTGCTACAAATTTTCTGAAAGTCCTCAACTACTGTGATGTGAAAATATGCGATGCGTTCCTGCAAGAGAGAAGCCAGTATGCTTGTC</gDNA_template>
            <first_frame> I  V  Q  L  T  A  S  G  N  F  E  E  A  L  A  L  C  K  L  L  P  P  E  D  S  S  L  R  S  S  K  E  Q  S  I  H  M  R :   Y  A  H  F  L  F  E  N  G  S  Y  E  E  A  M  E  H  F  L  A  S  Q  V  E  I  T  Y  V  L  A  L  Y  P  S  I  I  V  P  K  S  S  C  I  P  E  P  Q  K  F  A  D  V  A  D  A  P  Y  L  S  R  G  S  S  G  L  S  D  D  L  D  S  P  S  S  D  V  F  E  S  D  E  M  D  I  E  S  K  K  M  S  H  N  T  L  M  A  L  I  K  Y  L  Q  K  K  R  Y  S  V  I  E  K  A  T  T  E  G  T  E  E  V  V  S  D  A  V  G  D  N  F  I  S  Y  G  T  D  R  S  K  K  P  T  K  :  G  R  I  H  I  P  I  T  S  I  A  R  D  M  A  A  I  L  D  T  A  L  L  Q  A  L  F  L  T  G  Q  S  S  A  A  T  N  F  L  K  V  L  N  Y  C  D  V  K  I  C  D  A  F  L  Q  E  R  S  Q  Y  A  C  </first_frame>
            <second_frame>  L  Y  N  *  Q  H  L  E  T  L  R  R  P  W  L  C  A  N  C  Y  H  Q  K  I  P  V  L  D  L  Q  R  S  S  Q  F  I  *   : D  M  R  T  F  Y  L  K  M  G  A  M  K  K  Q  W  N  I  F  W  H  L  K  L  K  S  L  M  C  S  P  Y  I  H  P  L  L  F  Q  N  H  L  A  Y  L  N  H  R  N  L  Q  M  L  Q  M  H  H  I  S  P  E  A  L  L  V  C  Q  M  I  *  I  L  R  L  R  M  Y  L  N  L  M  K  W  I  *  S  P  R  K  *  A  T  T  L  *  W  L  *  L  S  I  C  R  K  R  D  T  V  S  L  R  K  Q  Q  L  R  E  L  K  K  W  F  Q  M  L  L  E  I  I  S  F  L  M  E  L  T  G  P  K  N  Q  P  R :   A  E  F  I  F  L  S  L  P  S  L  G  T  W  L  Q  Y  W  T  L  H  F  F  K  L  C  F  *  L  D  S  P  L  L  L  Q  I  F  *  K  S  S  T  T  V  M  *  K  Y  A  M  R  S  C  K  R  E  A  S  M  L  V </second_frame>
            <third_frame>   C  T  T  N  S  I  W  K  L  *  G  G  L  G  F  V  Q  I  A  T  T  R  R  F  Q  S  *  I  F  K  G  A  V  N  S  Y  E  :  I  C  A  L  S  I  *  K  W  E  L  *  R  S  N  G  T  F  S  G  I  S  S  *  N  H  L  C  A  R  L  I  S  I  H  Y  C  S  K  I  I  L  H  T  *  T  T  E  I  C  R  C  C  R  C  T  I  S  L  P  R  L  F  W  S  V  R  *  S  R  F  S  V  F  G  C  I  *  I  *  *  N  G  Y  R  V  Q  E  N  E  P  Q  H  F  D  G  S  D  *  V  F  A  E  K  E  I  Q  C  H  *  E  S  N  N  *  G  N  *  R  S  G  F  R  C  C  W  R  *  F  H  F  L  W  N  *  P  V  Q  K  T  N  Q   : G  Q  N  S  Y  S  Y  H  F  H  R  *  G  H  G  C  N  T  G  H  C  T  S  S  S  S  V  F  N  W  T  V  L  C  C  Y  K  F  S  E  S  P  Q  L  L  *  C  E  N  M  R  C  V  P  A  R  E  K  P  V  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57380" stop="57268"/>
                    <exon start="55961" stop="55535"/>
                    <exon start="54998" stop="54813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVQLTASGNFEEALALCKLLPPEDSSLRSSKEQSIHMRYAHFLFENGSYEEAMEHFLASQVEITYVLALYPSIIVPKSSCIPEPQKFADVADAPYLSRGSSGLSDDLDSPSSDVFESDEMDIESKKMSHNTLMALIKYLQKKRYSVIEKATTEGTEEVVSDAVGDNFISYGTDRSKKPTKGRIHIPITSIARDMAAILDTALLQALFLTGQSSAATNFLKVLNYCDVKICDAFLQERSQYAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="58746" PGL_stop="58009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58746" e_stop="58009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="58746" e_stop="58009" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58746" stop="58009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58745" stop="58387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGTTATAATATATCCATAGAATCTATATCCTCAAAGTTTTCTTCATTGTATATAAAAGAGCAAATGTAGCACATTGTCCAAATTCTTATGCTGCCTCATCTCTTTGAATATTATGTGGTTTGACTAGGAGTGCAAACTAAGAAATTTGTTTGAATTGTATATCACATTCATGTGGTGAAAAAGATCAAGTTAAATATTGGAGTTCATGTGAACGGCTGGTTTGATTGGAAAATATAAGACTGCAATATAGTTTAGACTCGAAAGTTTAATTTGGGAAGTCATCCAAAGTGAACTGTGTAATATACGTCAGATGGGGGTGTATTCTAGTACCAGTGTATTTTGTCTTTATGATTTACCGTAACTGAAGTGCCCTCAGTCAATAAATATCGGTGTTTAGCTGAGGTGATGGATATTGGAGATTGAAGAATGTTAGTGATCAAAACAGTATGTTGAACCTTGTACTTTAAGGTTTGGAATGTAGACTCTTGGATTACTATTATGGATCCTAGGCCCATCTACTGTTCAACTCAAGTACCACCATCTTTAGCCTTCAACTTGTAGAACTCACTACGATTCCAGGTGGCCCCATAGAGCCGAGTTCTGATGCCTAAGTGAGTGTTGACCAAAAACTTCTAGGTGTTGACCAAGGTAGAAGAAAGATTGACACAACCTTAGCACCAAAAGCTAGCTATTAAGGTGGGA</gDNA_template>
            <first_frame> W  M  S  Q  A  Q  T  T  G  P  P  R  S  Y  N  I  S  I  E  S  I  S  S  K  F  S  S  L  Y  I  K  E  Q  M  *  H  I  V  Q  I  L  M  L  P  H  L  F  E  Y  Y  V  V  *  L  G  V  Q  T  K  K  F  V  *  I  V  Y  H  I  H  V  V  K  K  I  K  L  N  I  G  V  H  V  N  G  W  F  D  W  K  I  *  D  C  N  I  V  *  T  R  K  F  N  L  G  S  H  P  K  *  T  V  *  Y  T  S  D  G  G  V  F  *  Y  Q  C  I  L  S  L  *  F  T  V  T  E  V  P  S  V  N  K  Y  R  C  L  A  E  V  M  D  I  G  D  *  R  M  L  V  I  K  T  V  C  *  T  L  Y  F  K  V  W  N  V  D  S  W  I  T  I  M  D  P  R  P  I  Y  C  S  T  Q  V  P  P  S  L  A  F  N  L  *  N  S  L  R  F  Q  V  A  P  *  S  R  V  L  M  P  K  *  V  L  T  K  N  F  *  V  L  T  K  V  E  E  R  L  T  Q  P  *  H  Q  K  L  A  I  K  V  G </first_frame>
            <second_frame>  G  C  P  K  L  K  P  L  G  H  P  E  V  I  I  Y  P  *  N  L  Y  P  Q  S  F  L  H  C  I  *  K  S  K  C  S  T  L  S  K  F  L  C  C  L  I  S  L  N  I  M  W  F  D  *  E  C  K  L  R  N  L  F  E  L  Y  I  T  F  M  W  *  K  R  S  S  *  I  L  E  F  M  *  T  A  G  L  I  G  K  Y  K  T  A  I  *  F  R  L  E  S  L  I  W  E  V  I  Q  S  E  L  C  N  I  R  Q  M  G  V  Y  S  S  T  S  V  F  C  L  Y  D  L  P  *  L  K  C  P  Q  S  I  N  I  G  V  *  L  R  *  W  I  L  E  I  E  E  C  *  *  S  K  Q  Y  V  E  P  C  T  L  R  F  G  M  *  T  L  G  L  L  L  W  I  L  G  P  S  T  V  Q  L  K  Y  H  H  L  *  P  S  T  C  R  T  H  Y  D  S  R  W  P  H  R  A  E  F  *  C  L  S  E  C  *  P  K  T  S  R  C  *  P  R  *  K  K  D  *  H  N  L  S  T  K  S  *  L  L  R  W   </second_frame>
            <third_frame>   D  V  P  S  S  N  H  W  A  T  P  K  L  *  Y  I  H  R  I  Y  I  L  K  V  F  F  I  V  Y  K  R  A  N  V  A  H  C  P  N  S  Y  A  A  S  S  L  *  I  L  C  G  L  T  R  S  A  N  *  E  I  C  L  N  C  I  S  H  S  C  G  E  K  D  Q  V  K  Y  W  S  S  C  E  R  L  V  *  L  E  N  I  R  L  Q  Y  S  L  D  S  K  V  *  F  G  K  S  S  K  V  N  C  V  I  Y  V  R  W  G  C  I  L  V  P  V  Y  F  V  F  M  I  Y  R  N  *  S  A  L  S  Q  *  I  S  V  F  S  *  G  D  G  Y  W  R  L  K  N  V  S  D  Q  N  S  M  L  N  L  V  L  *  G  L  E  C  R  L  L  D  Y  Y  Y  G  S  *  A  H  L  L  F  N  S  S  T  T  I  F  S  L  Q  L  V  E  L  T  T  I  P  G  G  P  I  E  P  S  S  D  A  *  V  S  V  D  Q  K  L  L  G  V  D  Q  G  R  R  K  I  D  T  T  L  A  P  K  A  S  Y  *  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0074A14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="61851" PGL_stop="60605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61851" e_stop="61390"/>
            <exon e_start="60816" e_stop="60605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61851" e_stop="61390" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61389" i_stop="60817" i_length="573"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="60816" e_stop="60605" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61851" stop="61390"/>
              <exon start="60816" stop="60605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACCCAAATCAATCAGGGAAGAAGAAAGATGGTGCACACTGCCTACGATACCTTCCAACTCCTCAATAATTCTCCCTCCAAAATCGATGCCATTGAATCATACCGCTCAAATTTGCTCATCGCATGTTCCGATGGATCGCTCCGTGTTTACGTTCCAGAATCCTCAGTTTCCGATCAATCTGATTTCCATTCCGAAACCTTAGGGCTTCATCAAGGACCATATGTGCTTGAAAGAACTCTGAATGGATTCTCCAGAAGACAAATGCTGGCCATGGAAGTCCTCGTCTCACGAGAACTTCTGCTTTCCCTCTCCGAGTCAATTGCGTTACATCGATTGCCTGATTTGGAGACTTTATCAGTGATTACTAAGGCTAAAGGTGCAAATGTATATTCGTGGGATGATAAACGAGGGTTACTTTGCTTCGGCAGGCAAAAAAGAGTCTGTATTTACAAACACGACG : GGGGGAGTGGATTTGTGGAGGTGAAAGAATTTGGAGTACCTGACACAGTTAAGTCGATGTCATGGTGTGGTGAGAATATTTGCTTGGGGATTAGAAGAGAGTACAAGATATTGAATACCACTAATGGTGTATTGTCTGAGGTGTTCTCTTCAGGGAGGATCGCCGCACCTCTTGTGGTGGCTCTTCCACCCGGAGAACTACTTTTGGGCAAG</gDNA_template>
            <first_frame> L  P  K  S  I  R  E  E  E  R  W  C  T  L  P  T  I  P  S  N  S  S  I  I  L  P  P  K  S  M  P  L  N  H  T  A  Q  I  C  S  S  H  V  P  M  D  R  S  V  F  T  F  Q  N  P  Q  F  P  I  N  L  I  S  I  P  K  P  *  G  F  I  K  D  H  M  C  L  K  E  L  *  M  D  S  P  E  D  K  C  W  P  W  K  S  S  S  H  E  N  F  C  F  P  S  P  S  Q  L  R  Y  I  D  C  L  I  W  R  L  Y  Q  *  L  L  R  L  K  V  Q  M  Y  I  R  G  M  I  N  E  G  Y  F  A  S  A  G  K  K  E  S  V  F  T  N  T  T  :  G  G  V  D  L  W  R  *  K  N  L  E  Y  L  T  Q  L  S  R  C  H  G  V  V  R  I  F  A  W  G  L  E  E  S  T  R  Y  *  I  P  L  M  V  Y  C  L  R  C  S  L  Q  G  G  S  P  H  L  L  W  W  L  F  H  P  E  N  Y  F  W  A   </first_frame>
            <second_frame>  Y  P  N  Q  S  G  K  K  K  D  G  A  H  C  L  R  Y  L  P  T  P  Q  *  F  S  L  Q  N  R  C  H  *  I  I  P  L  K  F  A  H  R  M  F  R  W  I  A  P  C  L  R  S  R  I  L  S  F  R  S  I  *  F  P  F  R  N  L  R  A  S  S  R  T  I  C  A  *  K  N  S  E  W  I  L  Q  K  T  N  A  G  H  G  S  P  R  L  T  R  T  S  A  F  P  L  R  V  N  C  V  T  S  I  A  *  F  G  D  F  I  S  D  Y  *  G  *  R  C  K  C  I  F  V  G  *  *  T  R  V  T  L  L  R  Q  A  K  K  S  L  Y  L  Q  T  R  R :   G  E  W  I  C  G  G  E  R  I  W  S  T  *  H  S  *  V  D  V  M  V  W  *  E  Y  L  L  G  D  *  K  R  V  Q  D  I  E  Y  H  *  W  C  I  V  *  G  V  L  F  R  E  D  R  R  T  S  C  G  G  S  S  T  R  R  T  T  F  G  Q  </second_frame>
            <third_frame>   T  Q  I  N  Q  G  R  R  K  M  V  H  T  A  Y  D  T  F  Q  L  L  N  N  S  P  S  K  I  D  A  I  E  S  Y  R  S  N  L  L  I  A  C  S  D  G  S  L  R  V  Y  V  P  E  S  S  V  S  D  Q  S  D  F  H  S  E  T  L  G  L  H  Q  G  P  Y  V  L  E  R  T  L  N  G  F  S  R  R  Q  M  L  A  M  E  V  L  V  S  R  E  L  L  L  S  L  S  E  S  I  A  L  H  R  L  P  D  L  E  T  L  S  V  I  T  K  A  K  G  A  N  V  Y  S  W  D  D  K  R  G  L  L  C  F  G  R  Q  K  R  V  C  I  Y  K  H  D   : G  G  S  G  F  V  E  V  K  E  F  G  V  P  D  T  V  K  S  M  S  W  C  G  E  N  I  C  L  G  I  R  R  E  Y  K  I  L  N  T  T  N  G  V  L  S  E  V  F  S  S  G  R  I  A  A  P  L  V  V  A  L  P  P  G  E  L  L  L  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61849" stop="61390"/>
                    <exon start="60816" stop="60605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQINQGRRKMVHTAYDTFQLLNNSPSKIDAIESYRSNLLIACSDGSLRVYVPESSVSDQSDFHSETLGLHQGPYVLERTLNGFSRRQMLAMEVLVSRELLLSLSESIALHRLPDLETLSVITKAKGANVYSWDDKRGLLCFGRQKRVCIYKHDGGSGFVEVKEFGVPDTVKSMSWCGENICLGIRREYKILNTTNGVLSEVFSSGRIAAPLVVALPPGELLLGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="64110" PGL_stop="63072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64110" e_stop="64059"/>
            <exon e_start="63918" e_stop="63776"/>
            <exon e_start="63626" e_stop="63540"/>
            <exon e_start="63466" e_stop="63144"/>
            <exon e_start="63079" e_stop="63072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.502" acc_prob="0.986" e_score="0.997"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64110" e_stop="64059" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.900">
            <gDNA_intron_boundary i_start="64058" i_stop="63919" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63918" e_stop="63776" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="63775" i_stop="63627" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63626" e_stop="63540" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="63539" i_stop="63467" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="63466" e_stop="63144" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.502" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63143" i_stop="63080" i_length="64"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="63079" e_stop="63072" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64059"/>
              <exon start="63918" stop="63776"/>
              <exon start="63626" stop="63540"/>
              <exon start="63466" stop="63144"/>
              <exon start="63079" stop="63072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAATTGCCCTACCCCCAGCATCTTCTCTTTCCATCCGAACTTGAACAAG : AGCGATGTGTGGTGCGTGGGCATGCATCCAAGATTTTCCATCCTTTCTTTTCTCCTCGAGACTTCAAAGTGAACTCTGGGGAACTGAAAAGTAAGCTGATGGTGAATTTTGATCCAGTAAGGTGCTTTATTGCCGATATCGAG : AAAGGATTTCCCGATGTGGTCAAGGTTTGGTACGATGCTGTGGGTGGTGATGCTCTTGGTCTTACACTAGGAAAAGCAAGTTCACAG : AAACGGAAGCATGATGACTCCGCGGAGGAGAGCACAGATCTTTTGAATACGCTAAAAACCATAGGCGAGGTTGGGAAAGGCCTTGTGAGAAGTATTCATGTTGTCAAGGCCCGAAAGGCGTGATAATTGAAATGTTCAAAAGAATGTACACTATGGGTATTGTTATCAAGGTTACCGGCCGGTAGGGAGCTCTTCAAATTTTGCAGCACAACTTTTGTACATGTGTAGTCTCTTGTCGAAGAGCCAACAATCACTTGTATTTGTAATTGTATTGAGAAATTCATTTTATAATTCGAGAAAAAGAAGAAAAAAGAGAACTGCAT : AAACCTAC</gDNA_template>
            <first_frame> D  K  L  P  Y  P  Q  H  L  L  F  P  S  E  L  E  Q   : E  R  C  V  V  R  G  H  A  S  K  I  F  H  P  F  F  S  P  R  D  F  K  V  N  S  G  E  L  K  S  K  L  M  V  N  F  D  P  V  R  C  F  I  A  D  I  E  :  K  G  F  P  D  V  V  K  V  W  Y  D  A  V  G  G  D  A  L  G  L  T  L  G  K  A  S  S  Q  :  K  R  K  H  D  D  S  A  E  E  S  T  D  L  L  N  T  L  K  T  I  G  E  V  G  K  G  L  V  R  S  I  H  V  V  K  A  R  K  A  *  *  L  K  C  S  K  E  C  T  L  W  V  L  L  S  R  L  P  A  G  R  E  L  F  K  F  C  S  T  T  F  V  H  V  *  S  L  V  E  E  P  T  I  T  C  I  C  N  C  I  E  K  F  I  L  *  F  E  K  K  K  K  K  E  N  C  I :   N  L  </first_frame>
            <second_frame>  I  N  C  P  T  P  S  I  F  S  F  H  P  N  L  N  K  :  S  D  V  W  C  V  G  M  H  P  R  F  S  I  L  S  F  L  L  E  T  S  K  *  T  L  G  N  *  K  V  S  *  W  *  I  L  I  Q  *  G  A  L  L  P  I  S  R :   K  D  F  P  M  W  S  R  F  G  T  M  L  W  V  V  M  L  L  V  L  H  *  E  K  Q  V  H  R :   N  G  S  M  M  T  P  R  R  R  A  Q  I  F  *  I  R  *  K  P  *  A  R  L  G  K  A  L  *  E  V  F  M  L  S  R  P  E  R  R  D  N  *  N  V  Q  K  N  V  H  Y  G  Y  C  Y  Q  G  Y  R  P  V  G  S  S  S  N  F  A  A  Q  L  L  Y  M  C  S  L  L  S  K  S  Q  Q  S  L  V  F  V  I  V  L  R  N  S  F  Y  N  S  R  K  R  R  K  K  R  T  A   : *  T  Y </second_frame>
            <third_frame>   *  I  A  L  P  P  A  S  S  L  S  I  R  T  *  T  R :   A  M  C  G  A  W  A  C  I  Q  D  F  P  S  F  L  F  S  S  R  L  Q  S  E  L  W  G  T  E  K  *  A  D  G  E  F  *  S  S  K  V  L  Y  C  R  Y  R   : E  R  I  S  R  C  G  Q  G  L  V  R  C  C  G  W  *  C  S  W  S  Y  T  R  K  S  K  F  T   : E  T  E  A  *  *  L  R  G  G  E  H  R  S  F  E  Y  A  K  N  H  R  R  G  W  E  R  P  C  E  K  Y  S  C  C  Q  G  P  K  G  V  I  I  E  M  F  K  R  M  Y  T  M  G  I  V  I  K  V  T  G  R  *  G  A  L  Q  I  L  Q  H  N  F  C  T  C  V  V  S  C  R  R  A  N  N  H  L  Y  L  *  L  Y  *  E  I  H  F  I  I  R  E  K  E  E  K  R  E  L  H  :  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64110" stop="64059"/>
                    <exon start="63918" stop="63776"/>
                    <exon start="63626" stop="63540"/>
                    <exon start="63466" stop="63344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKLPYPQHLLFPSELEQERCVVRGHASKIFHPFFSPRDFKVNSGELKSKLMVNFDPVRCFIADIEKGFPDVVKVWYDAVGGDALGLTLGKASSQKRKHDDSAEESTDLLNTLKTIGEVGKGLVRSIHVVKARKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63336" stop="63144"/>
                    <exon start="63079" stop="63078"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVQKNVHYGYCYQGYRPVGSSSNFAAQLLYMCSLLSKSQQSLVFVIVLRNSFYNSRKRRKKRTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="69262" PGL_stop="64285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69262" e_stop="69185"/>
            <exon e_start="69098" e_stop="68985"/>
            <exon e_start="68890" e_stop="68769"/>
            <exon e_start="68678" e_stop="68596"/>
            <exon e_start="68511" e_stop="68387"/>
            <exon e_start="68249" e_stop="68129"/>
            <exon e_start="68056" e_stop="67919"/>
            <exon e_start="66195" e_stop="66099"/>
            <exon e_start="65985" e_stop="65860"/>
            <exon e_start="64343" e_stop="64285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.821" acc_prob="0.780" e_score="0.949"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.844" e_score="0.967"/>
          <exon-intron don_prob="0.820" acc_prob="0.979" e_score="0.976"/>
          <exon-intron don_prob="0.921" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.537" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.375" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.901" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="69262" e_stop="69185" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.821" acc_prob="0.780">
            <gDNA_intron_boundary i_start="69184" i_stop="69099" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="69098" e_stop="68985" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68984" i_stop="68891" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="68890" e_stop="68769" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.844">
            <gDNA_intron_boundary i_start="68768" i_stop="68679" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="68678" e_stop="68596" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.820" acc_prob="0.979">
            <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68511" e_stop="68387" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.921" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68249" e_stop="68129" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.537" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68056" e_stop="67919" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.946">
            <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66195" e_stop="66099" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.375" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65985" e_stop="65860" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65859" i_stop="64344" i_length="1516"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="64343" e_stop="64285" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69262" stop="69185"/>
              <exon start="69098" stop="68985"/>
              <exon start="68890" stop="68769"/>
              <exon start="68678" stop="68596"/>
              <exon start="68511" stop="68387"/>
              <exon start="68249" stop="68178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68628" stop="68596"/>
              <exon start="68511" stop="68387"/>
              <exon start="68249" stop="68129"/>
              <exon start="68056" stop="67919"/>
              <exon start="66195" stop="66099"/>
              <exon start="65985" stop="65860"/>
              <exon start="64343" stop="64285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="68596"/>
              <exon start="68511" stop="68387"/>
              <exon start="68249" stop="68129"/>
              <exon start="68056" stop="67919"/>
              <exon start="66195" stop="66099"/>
              <exon start="65985" stop="65894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="68596"/>
              <exon start="68511" stop="68387"/>
              <exon start="68249" stop="68129"/>
              <exon start="68056" stop="67919"/>
              <exon start="66195" stop="66099"/>
              <exon start="65985" stop="65894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCATCTTTCCATTCCCAAACAAAAAGTTGTTCCTATTGTGGATCAACTTGATTTTTGTCTTCTCCACAGGGATGTAG : ATCCTATATCTTTCTCAAAAAGTTTGCTGGTGGCACTTGAAGAGCTGTCAAAGCGTTTGCTTCAGCTGAATGACATTCCACTAAAGGTGTCGACTGTGCAAGCTCTAGACTCAG : CTGCTAGGTTGACATCTGTCTTTCCGCCCATGCCTCATCCTCTGGCACATGAGAAGAGTGTTGCCACAAAACTAAGGAAGCCTATTTCAACCTGTATAAATCCAGTTGAAGTTATGATTCAG : CTTGAAGGATCTGGAAGTTGGCCGATGGATGAAATTGCAATAGAGAAGACAAAAACTGCATTTCTTCTTAGAATTGCTGAGAG : TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA : GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG : GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG : GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT : GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCA : GAGCTAAGACGACTGGTGGCTTATTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</gDNA_template>
            <first_frame> G  I  F  P  F  P  N  K  K  L  F  L  L  W  I  N  L  I  F  V  F  S  T  G  M  *  :  I  L  Y  L  S  Q  K  V  C  W  W  H  L  K  S  C  Q  S  V  C  F  S  *  M  T  F  H  *  R  C  R  L  C  K  L  *  T  Q  :  L  L  G  *  H  L  S  F  R  P  C  L  I  L  W  H  M  R  R  V  L  P  Q  N  *  G  S  L  F  Q  P  V  *  I  Q  L  K  L  *  F  S :   L  K  D  L  E  V  G  R  W  M  K  L  Q  *  R  R  Q  K  L  H  F  F  L  E  L  L  R   : V  C  R  T  I  G  G  *  C  L  Q  L  Q  K  M  M  *  M  F  *  C  L  A  M  H  S  A  L  K  F  L  M  K  G  L  L  V  W  *  L  G  K  :  V  I  T  V  D  I  N  G  A  S  L  L  T  E  N  F  F  C  N  T  N  M  R  A  R  S  M  L  *  G  V  V  I  L  Y  M  D  Q  *  F   : G  *  L  K  D  G  S  L  H  I  Y  Y  P  R  C  *  Q  R  R  Q  L  N  Y  W  F  Q  I  F  S  *  D  L  C  H  L  N  L  L  S  P  E  *  Q  D  F  *   : G  S  Y  D  Y  Y  R  N  M  I  G  P  F  L  P  *  S  L  I  L  M  V  T  F  Q  L  R  R  K  I  K  L  M :   R  I  S  *  E  V  E  K  S  M  K  R  T  H  R  N  Q  V  L  Q  C  F  *  L  L  N  M  T  L  H  L  K  L  G  Q  D  P  H  Q  L  Q  Q :   S  *  D  D  W  W  L  I  Q  L  A  V  R  I  C  *  P  N  *  </first_frame>
            <second_frame>  A  S  F  H  S  Q  T  K  S  C  S  Y  C  G  S  T  *  F  L  S  S  P  Q  G  C  R :   S  Y  I  F  L  K  K  F  A  G  G  T  *  R  A  V  K  A  F  A  S  A  E  *  H  S  T  K  G  V  D  C  A  S  S  R  L  S :   C  *  V  D  I  C  L  S  A  H  A  S  S  S  G  T  *  E  E  C  C  H  K  T  K  E  A  Y  F  N  L  Y  K  S  S  *  S  Y  D  S   : A  *  R  I  W  K  L  A  D  G  *  N  C  N  R  E  D  K  N  C  I  S  S  *  N  C  *  E  :  S  A  E  Q  L  G  D  D  V  Y  S  Y  R  R  *  C  R  C  S  N  V  W  L  C  I  P  P  *  N  F  S  *  K  G  S  W  S  G  D  W  A  K :   *  *  Q  S  T  S  M  E  P  L  C  *  Q  K  T  S  S  A  T  P  T  C  E  Q  D  Q  C  F  K  G  S  L  S  Y  I  W  T  N  S  S  :  A  S  *  K  M  G  L  C  T  S  I  I  H  G  A  D  R  G  G  S  *  T  I  G  F  K  S  F  L  E  T  F  A  I  *  T  S  F  L  P  N  N  R  I  F  E  :  V  L  T  I  I  I  G  I  *  L  G  L  F  S  L  N  R  *  F  *  W  *  L  F  N  *  G  E  K  *  N  *   : *  E  F  H  E  K  *  R  R  A  *  K  G  H  T  E  I  K  S  C  N  V  F  S  Y  *  I  *  R  C  I  *  S  L  D  K  I  L  T  N  Y  S   : R  A  K  T  T  G  G  L  F  N  *  Q  C  E  F  V  D  Q  T  D </second_frame>
            <third_frame>   H  L  S  I  P  K  Q  K  V  V  P  I  V  D  Q  L  D  F  C  L  L  H  R  D  V   : D  P  I  S  F  S  K  S  L  L  V  A  L  E  E  L  S  K  R  L  L  Q  L  N  D  I  P  L  K  V  S  T  V  Q  A  L  D  S   : A  A  R  L  T  S  V  F  P  P  M  P  H  P  L  A  H  E  K  S  V  A  T  K  L  R  K  P  I  S  T  C  I  N  P  V  E  V  M  I  Q  :  L  E  G  S  G  S  W  P  M  D  E  I  A  I  E  K  T  K  T  A  F  L  L  R  I  A  E  S :   L  Q  N  N  W  G  M  M  F  T  A  T  E  D  D  V  D  V  L  M  S  G  Y  A  F  R  L  K  I  S  H  E  R  A  L  G  L  V  T  G  Q   : S  N  N  S  R  H  Q  W  S  L  S  A  D  R  K  L  L  L  Q  H  Q  H  A  S  K  I  N  A  L  R  G  R  Y  P  I  Y  G  P  I  V  R :   L  A  K  R  W  V  S  A  H  L  L  S  T  V  L  T  E  E  A  V  E  L  L  V  S  N  L  F  L  R  P  L  P  F  E  P  P  F  S  R  I  T  G  F  L  R :   F  L  R  L  L  S  E  Y  D  W  A  F  S  P  L  I  V  D  F  D  G  D  F  S  T  E  E  K  N  K  I  N  :  E  N  F  M  R  S  R  E  E  H  E  K  D  T  Q  K  S  S  P  A  M  F  L  A  T  K  Y  D  V  A  S  E  A  W  T  R  S  S  P  T  T  A  :  E  L  R  R  L  V  A  Y  S  T  S  S  A  N  L  L  T  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69260" stop="69185"/>
                    <exon start="69098" stop="68985"/>
                    <exon start="68890" stop="68769"/>
                    <exon start="68678" stop="68596"/>
                    <exon start="68511" stop="68387"/>
                    <exon start="68249" stop="68129"/>
                    <exon start="68056" stop="67919"/>
                    <exon start="66195" stop="66099"/>
                    <exon start="65985" stop="65860"/>
                    <exon start="64343" stop="64287"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSIPKQKVVPIVDQLDFCLLHRDVDPISFSKSLLVALEELSKRLLQLNDIPLKVSTVQALDSAARLTSVFPPMPHPLAHEKSVATKLRKPISTCINPVEVMIQLEGSGSWPMDEIAIEKTKTAFLLRIAESLQNNWGMMFTATEDDVDVLMSGYAFRLKISHERALGLVTGQSNNSRHQWSLSADRKLLLQHQHASKINALRGRYPIYGPIVRLAKRWVSAHLLSTVLTEEAVELLVSNLFLRPLPFEPPFSRITGFLRFLRLLSEYDWAFSPLIVDFDGDFSTEEKNKINENFMRSREEHEKDTQKSSPAMFLATKYDVASEAWTRSSPTTAELRRLVAYSTSSANLLTKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="76751" PGL_stop="79109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76751" e_stop="76868"/>
            <exon e_start="76972" e_stop="77014"/>
            <exon e_start="77096" e_stop="77160"/>
            <exon e_start="77753" e_stop="77849"/>
            <exon e_start="78016" e_stop="78086"/>
            <exon e_start="78671" e_stop="78762"/>
            <exon e_start="78868" e_stop="79078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.443" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.600" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76751" e_stop="76868" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.443">
            <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76972" e_stop="77014" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77096" e_stop="77160" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.600">
            <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77753" e_stop="77849" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.848">
            <gDNA_intron_boundary i_start="77850" i_stop="78015" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78016" e_stop="78086" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78671" e_stop="78762" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="78868" e_stop="79078" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76751" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="79011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76752" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="78979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76798" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="78913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76798" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="78912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76801" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="79077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76997" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78016" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="79078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAAGAGTAGCTTTGCCAGTTCTTCTATTGTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAG : CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAG : TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCG : GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAG : TTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG : ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAA : ATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTATCAG</gDNA_template>
            <first_frame> T  K  E  *  L  C  Q  F  F  Y  C  E  I  Y  R  K  N  D  K  G  G  N  G  D  *  H  L  R  Q  A  S  P  F  E  I  L  R  I  S   : A  S  G  E  A  T  R  A  H  P  P  C  L  H  S :   L  K  Q  Q  A  *  Q  C  E  Q  F  Y  S  E  L  R  G  N  F  R  S   : G  Y  K  A  R  V  *  A  L  C  Y  L  I  F  R  V  S  I  *  *  L  *  E  *  V  G  H  A  R  L  N  T  S :   F  C  R  N  S  G  Q  M  L  Q  K  C  M  R  A  *  C  S  I  Q  L  *  Q   : D  A  Y  H  S  R  *  N  N  F  R  W  S  S  A  R  N  R  F  C  *  S  R  E  S  S  G  R  D  L  K  :  I  R  V  N  H  *  C  W  H  I  D  Q  Q  I  Y  S  V  L  V  G  *  I  T  H  G  S  S  V  H  Y  H  I  L  V  L  K  M  N  Y  R  E  Y  D  M  Y  T  F  S  V  W  H  V  N  *  L  L  D  L  *  S  *  L  D  T  P  F  S  E  L  S  </first_frame>
            <second_frame>  Q  K  S  S  F  A  S  S  S  I  V  R  F  T  G  R  M  I  K  A  V  M  V  I  N  T  F  G  K  P  R  L  S  K  F  Y  E  F  Q  :  P  V  E  K  Q  Q  E  L  I  R  H  V  Y  T   : V  L  S  N  R  P  D  N  V  S  N  F  I  R  S  L  G  A  I  F  G  P  :  D  T  R  L  V  Y  K  H  Y  A  T  L  Y  F  V  F  L  F  D  N  S  E  N  E  L  A  M  L  D  L  I  Q   : V  F  V  E  T  L  D  K  C  F  R  S  V  C  E  L  D  V  V  F  N  Y  S  K  :  M  H  I  I  L  D  E  I  I  L  G  G  Q  V  L  E  T  D  S  V  E  V  V  K  A  V  E  E  I  S  K :   L  E  S  T  T  S  A  G  T  L  I  N  K  S  I  P  S  W  W  A  R  *  H  M  V  P  L  Y  I  T  I  S  *  C  *  K  *  T  I  G  N  M  T  C  I  L  F  Q  F  G  M  L  T  D  F  S  I  C  N  H  S  W  I  H  P  S  L  S  Y  Q </second_frame>
            <third_frame>   K  R  V  A  L  P  V  L  L  L  *  D  L  Q  E  E  *  *  R  R  *  W  *  L  T  P  S  A  S  L  A  F  R  N  F  T  N  F  S :   Q  W  R  S  N  K  S  S  S  A  M  S  T  Q  :  S  *  A  T  G  L  T  M  *  A  I  L  F  G  A  *  G  Q  F  S  V  R :   I  Q  G  S  C  I  S  T  M  L  P  Y  I  S  C  F  Y  L  I  T  L  R  M  S  W  P  C  S  T  *  Y  K  :  F  L  *  K  L  W  T  N  A  S  E  V  Y  A  S  L  M  *  Y  S  I  I  A  R :   C  I  S  F  *  M  K  *  F  *  V  V  K  C  *  K  Q  I  L  L  K  S  *  K  Q  W  K  R  S  Q   : N  *  S  Q  P  L  V  L  A  H  *  S  T  N  L  F  R  L  G  G  L  D  N  T  W  F  L  C  T  L  P  Y  L  S  V  E  N  E  L  *  G  I  *  H  V  Y  F  F  S  L  A  C  *  L  T  S  R  F  V  I  I  A  G  Y  T  L  L  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76752" stop="76868"/>
                    <exon start="76972" stop="77014"/>
                    <exon start="77096" stop="77160"/>
                    <exon start="77753" stop="77849"/>
                    <exon start="78016" stop="78086"/>
                    <exon start="78671" stop="78762"/>
                    <exon start="78868" stop="78934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKSSFASSSIVRFTGRMIKAVMVINTFGKPRLSKFYEFQPVEKQQELIRHVYTVLSNRPDNVSNFIRSLGAIFGPDTRLVYKHYATLYFVFLFDNSENELAMLDLIQVFVETLDKCFRSVCELDVVFNYSKMHIILDEIILGGQVLETDSVEVVKAVEEISKLESTTSAGTLINKSIPSWWAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76782" e_stop="76868"/>
            <exon e_start="76972" e_stop="77014"/>
            <exon e_start="77096" e_stop="77160"/>
            <exon e_start="77753" e_stop="77849"/>
            <exon e_start="78013" e_stop="78086"/>
            <exon e_start="78671" e_stop="78762"/>
            <exon e_start="78868" e_stop="79109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.443" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.977"/>
          <exon-intron don_prob="0.974" acc_prob="0.600" e_score="0.985"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="0.986"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="0.978"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="76782" e_stop="76868" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.443">
            <gDNA_intron_boundary i_start="76869" i_stop="76971" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="76972" e_stop="77014" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77015" i_stop="77095" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="77096" e_stop="77160" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.600">
            <gDNA_intron_boundary i_start="77161" i_stop="77752" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="77753" e_stop="77849" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="77850" i_stop="78012" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="78013" e_stop="78086" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78087" i_stop="78670" i_length="584"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="78671" e_stop="78762" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78763" i_stop="78867" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="0.913">
            <gDNA_exon_boundary e_start="78868" e_stop="79109" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76782" stop="76868"/>
              <exon start="76972" stop="77014"/>
              <exon start="77096" stop="77160"/>
              <exon start="77753" stop="77849"/>
              <exon start="78013" stop="78086"/>
              <exon start="78671" stop="78762"/>
              <exon start="78868" stop="79109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAGATTTACAGGAAGAATGATAAAGGCGGTAATGGTGATTAACACCTTCGGCAAGCCTCGCCTTTCGAAATTTTACGAATTTCAG : CCAGTGGAGAAGCAACAAGAGCTCATCCGCCATGTCTACACAG : TCTTAAGCAACAGGCCTGACAATGTGAGCAATTTTATTCGGAGCTTAGGGGCAATTTTCGGTCCG : GATACAAGGCTCGTGTATAAGCACTATGCTACCTTATATTTCGTGTTTCTATTTGATAACTCTGAGAATGAGTTGGCCATGCTCGACTTAATACAAG : CAGTTTTTGTAGAAACTCTGGACAAATGCTTCAGAAGTGTATGCGAGCTTGATGTAGTATTCAATTATAGCAAG : ATGCATATCATTCTAGATGAAATAATTTTAGGTGGTCAAGTGCTAGAAACAGATTCTGTTGAAGTCGTGAAAGCAGTGGAAGAGATCTCAAA : ATTAGAGTCAACCACTAGTGCTGGCACATTGATCAACAAATCTATTCCGTCTTGGTGGGCTAGATAACACATGGTTCCTCTGTACATTACCATATCTTAGTGTTGAAAATGAACTATAGGGAATATGACATGTATACTTTTTCAGTTTGGCATGTTAACTGACTTCTCGATTTGTAATCATAGCTGGATACACCCTTCTCTGAGTTATCAGATTTTCTTTATAGGGTCCTTCACCGCTAGTT</gDNA_template>
            <first_frame> V  R  F  T  G  R  M  I  K  A  V  M  V  I  N  T  F  G  K  P  R  L  S  K  F  Y  E  F  Q  :  P  V  E  K  Q  Q  E  L  I  R  H  V  Y  T   : V  L  S  N  R  P  D  N  V  S  N  F  I  R  S  L  G  A  I  F  G  P  :  D  T  R  L  V  Y  K  H  Y  A  T  L  Y  F  V  F  L  F  D  N  S  E  N  E  L  A  M  L  D  L  I  Q   : A  V  F  V  E  T  L  D  K  C  F  R  S  V  C  E  L  D  V  V  F  N  Y  S  K  :  M  H  I  I  L  D  E  I  I  L  G  G  Q  V  L  E  T  D  S  V  E  V  V  K  A  V  E  E  I  S  K :   L  E  S  T  T  S  A  G  T  L  I  N  K  S  I  P  S  W  W  A  R  *  H  M  V  P  L  Y  I  T  I  S  *  C  *  K  *  T  I  G  N  M  T  C  I  L  F  Q  F  G  M  L  T  D  F  S  I  C  N  H  S  W  I  H  P  S  L  S  Y  Q  I  F  F  I  G  S  F  T  A  S  </first_frame>
            <second_frame>  *  D  L  Q  E  E  *  *  R  R  *  W  *  L  T  P  S  A  S  L  A  F  R  N  F  T  N  F  S :   Q  W  R  S  N  K  S  S  S  A  M  S  T  Q  :  S  *  A  T  G  L  T  M  *  A  I  L  F  G  A  *  G  Q  F  S  V  R :   I  Q  G  S  C  I  S  T  M  L  P  Y  I  S  C  F  Y  L  I  T  L  R  M  S  W  P  C  S  T  *  Y  K  :  Q  F  L  *  K  L  W  T  N  A  S  E  V  Y  A  S  L  M  *  Y  S  I  I  A  R :   C  I  S  F  *  M  K  *  F  *  V  V  K  C  *  K  Q  I  L  L  K  S  *  K  Q  W  K  R  S  Q   : N  *  S  Q  P  L  V  L  A  H  *  S  T  N  L  F  R  L  G  G  L  D  N  T  W  F  L  C  T  L  P  Y  L  S  V  E  N  E  L  *  G  I  *  H  V  Y  F  F  S  L  A  C  *  L  T  S  R  F  V  I  I  A  G  Y  T  L  L  *  V  I  R  F  S  L  *  G  P  S  P  L  V </second_frame>
            <third_frame>   E  I  Y  R  K  N  D  K  G  G  N  G  D  *  H  L  R  Q  A  S  P  F  E  I  L  R  I  S   : A  S  G  E  A  T  R  A  H  P  P  C  L  H  S :   L  K  Q  Q  A  *  Q  C  E  Q  F  Y  S  E  L  R  G  N  F  R  S   : G  Y  K  A  R  V  *  A  L  C  Y  L  I  F  R  V  S  I  *  *  L  *  E  *  V  G  H  A  R  L  N  T  S :   S  F  C  R  N  S  G  Q  M  L  Q  K  C  M  R  A  *  C  S  I  Q  L  *  Q   : D  A  Y  H  S  R  *  N  N  F  R  W  S  S  A  R  N  R  F  C  *  S  R  E  S  S  G  R  D  L  K  :  I  R  V  N  H  *  C  W  H  I  D  Q  Q  I  Y  S  V  L  V  G  *  I  T  H  G  S  S  V  H  Y  H  I  L  V  L  K  M  N  Y  R  E  Y  D  M  Y  T  F  S  V  W  H  V  N  *  L  L  D  L  *  S  *  L  D  T  P  F  S  E  L  S  D  F  L  Y  R  V  L  H  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76782" stop="76868"/>
                    <exon start="76972" stop="77014"/>
                    <exon start="77096" stop="77160"/>
                    <exon start="77753" stop="77849"/>
                    <exon start="78013" stop="78086"/>
                    <exon start="78671" stop="78762"/>
                    <exon start="78868" stop="78934"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRFTGRMIKAVMVINTFGKPRLSKFYEFQPVEKQQELIRHVYTVLSNRPDNVSNFIRSLGAIFGPDTRLVYKHYATLYFVFLFDNSENELAMLDLIQAVFVETLDKCFRSVCELDVVFNYSKMHIILDEIILGGQVLETDSVEVVKAVEEISKLESTTSAGTLINKSIPSWWAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="84177" PGL_stop="80103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84177" e_stop="83920"/>
            <exon e_start="83201" e_stop="83089"/>
            <exon e_start="81547" e_stop="81473"/>
            <exon e_start="81270" e_stop="81150"/>
            <exon e_start="80633" e_stop="80567"/>
            <exon e_start="80481" e_stop="80342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="0.938"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.956"/>
          <exon-intron don_prob="0.823" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.644" acc_prob="0.973" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="84177" e_stop="83920" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83919" i_stop="83202" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="83201" e_stop="83089" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83088" i_stop="81548" i_length="1541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81547" e_stop="81473" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="81270" e_stop="81150" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.644" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80633" e_stop="80567" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="80481" e_stop="80342" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84177" stop="83920"/>
              <exon start="83201" stop="83089"/>
              <exon start="81547" stop="81473"/>
              <exon start="81270" stop="81150"/>
              <exon start="80633" stop="80567"/>
              <exon start="80481" stop="80342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84177" stop="83920"/>
              <exon start="83201" stop="83089"/>
              <exon start="81547" stop="81473"/>
              <exon start="81270" stop="81150"/>
              <exon start="80633" stop="80567"/>
              <exon start="80481" stop="80344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAATATTACTACCATAAATCAAATTGACCATCAACATATTACCATAATTTTCAGTGCTGCAGTTCAGGTTAAACATTTCATGTTTGGTTGTTAATCTTCTGTACCTGAAATTTTAAAGGTTCATTGTTTGCTGAAATAGGCTACTACAAAAATCAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAG : CATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTG : CATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA : GAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG : GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG : GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTT</gDNA_template>
            <first_frame> F  *  Y  Y  Y  H  K  S  N  *  P  S  T  Y  Y  H  N  F  Q  C  C  S  S  G  *  T  F  H  V  W  L  L  I  F  C  T  *  N  F  K  G  S  L  F  A  E  I  G  Y  Y  K  N  Q  F  G  R  *  Q  I  A  T  V  P  M  L  *  F  K  S  S  R  C  W  S  T  A  W  W  Y  H  S  H  R  A  R  E  :  H  R  R  D  A  Q  C  C  T  G  C  *  K  W  L  T  I  S  T  A  H  N  *  D  D  N  S  H  C  L  *  Q  D  N  I  S  I  C :   M  *  L  V  Y  S  S  S  T  H  L  I  N  P  L  M  A  A  G  K  I  L  Y  I  E :   N  H  S  L  R  D  A  L  A  *  *  M  N  M  L  L  D  L  A  H  Q  L  S  G  M  I  C  *  L  L  Q  T  S  K  E  K  L  V  *  Q  :  E  A  I  Y  S  T  D  P  W  D  *  I  L  C  F  *  C  G  Q  *  K  D   : G  Q  I  I  G  L  Q  L  K  A  Y  T  C  V  A  A  G  H  I  P  V  V  E  *  W  A  P  Q  D  A  M  L  R  M  L  S  L  R  T  S  R  N  H  E  A  S  L </first_frame>
            <second_frame>  F  N  I  T  T  I  N  Q  I  D  H  Q  H  I  T  I  I  F  S  A  A  V  Q  V  K  H  F  M  F  G  C  *  S  S  V  P  E  I  L  K  V  H  C  L  L  K  *  A  T  T  K  I  N  L  A  V  D  R  L  P  Q  F  Q  C  C  N  L  S  H  P  D  A  G  P  Q  H  G  G  T  I  H  I  G  P  E  S :   I  E  E  M  H  S  A  A  Q  D  A  E  N  G  L  P  S  Q  R  P  I  I  E  M  T  I  P  T  V  F  D  K  T  I  S  P  S   : A  C  D  W  F  I  H  P  V  H  T  L  *  T  L  *  W  Q  L  G  K  S  C  I  *   : R  I  I  R  S  E  M  L  *  H  D  R  *  I  C  S  W  I  *  L  I  N  Y  R  V  *  Y  V  D  S  S  R  P  R  K  R  N  W  F  D  R :   R  Q  Y  I  P  R  I  H  G  I  R  F  S  V  F  N  A  A  S  E  R  M  :  V  K  L  S  D  S  N  *  R  P  I  L  V  W  Q  R  D  T  S  R  W  W  S  N  G  R  P  R  T  Q  C  C  A  C  C  H  *  G  L  Q  E  I  M  K  L  L   </second_frame>
            <third_frame>   L  I  L  L  P  *  I  K  L  T  I  N  I  L  P  *  F  S  V  L  Q  F  R  L  N  I  S  C  L  V  V  N  L  L  Y  L  K  F  *  R  F  I  V  C  *  N  R  L  L  Q  K  S  I  W  P  L  T  D  C  H  S  S  N  A  V  I  *  V  I  Q  M  L  V  H  S  M  V  V  P  F  T  *  G  Q  R   : A  *  K  R  C  T  V  L  H  R  M  L  K  M  A  Y  H  L  N  G  P  *  L  R  *  Q  F  P  L  S  L  T  R  Q  Y  L  H  L  :  H  V  I  G  L  F  I  Q  Y  T  P  Y  K  P  S  D  G  S  W  E  N  P  V  Y  R  :  E  S  F  A  Q  R  C  F  S  M  I  D  E  Y  A  P  G  F  S  S  S  I  I  G  Y  D  M  L  T  P  P  D  L  E  R  E  I  G  L  T   : G  G  N  I  F  H  G  S  M  G  L  D  S  L  F  L  M  R  P  V  K  G  W :   S  N  Y  R  T  P  I  E  G  L  Y  L  C  G  S  G  T  H  P  G  G  G  V  M  G  A  P  G  R  N  A  A  H  V  V  I  E  D  F  K  K  S  *  S  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83127" stop="83089"/>
                    <exon start="81547" stop="81473"/>
                    <exon start="81270" stop="81150"/>
                    <exon start="80633" stop="80567"/>
                    <exon start="80481" stop="80352"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPLSLTRQYLHLHVIGLFIQYTPYKPSDGSWENPVYRESFAQRCFSMIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGSMGLDSLFLMRPVKGWSNYRTPIEGLYLCGSGTHPGGGVMGAPGRNAAHVVIEDFKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81271" e_stop="81150"/>
            <exon e_start="80633" e_stop="80567"/>
            <exon e_start="80481" e_stop="80103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.644" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81271" e_stop="81150" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.644" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80633" e_stop="80567" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80481" e_stop="80103" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81271" stop="81150"/>
              <exon start="80633" stop="80567"/>
              <exon start="80481" stop="80103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG : GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG : GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGATCACAAGCGCAAATCTCTTCGATTGAAGAATCTTCAGAATGAGTGAATCCCCTCAATGTAAAGAATAATGTCATGCTGGGAACGGGAAAATAAGTTAAG</gDNA_template>
            <first_frame> G  I  I  R  S  E  M  L  *  H  D  R  *  I  C  S  W  I  *  L  I  N  Y  R  V  *  Y  V  D  S  S  R  P  R  K  R  N  W  F  D  R :   R  Q  Y  I  P  R  I  H  G  I  R  F  S  V  F  N  A  A  S  E  R  M  :  V  K  L  S  D  S  N  *  R  P  I  L  V  W  Q  R  D  T  S  R  W  W  S  N  G  R  P  R  T  Q  C  C  A  C  C  H  *  G  L  Q  E  I  M  K  L  L  L  C  D  S  F  D  E  F  N  Q  L  K  *  *  H  L  V  *  N  T  L  V  L  *  P  N  I  A  N  *  L  L  K  S  L  F  E  V  Y  *  I  L  K  S  V  *  L  I  T  S  A  N  L  F  D  *  R  I  F  R  M  S  E  S  P  Q  C  K  E  *  C  H  A  G  N  G  K  I  S  *  </first_frame>
            <second_frame>  E  S  F  A  Q  R  C  F  S  M  I  D  E  Y  A  P  G  F  S  S  S  I  I  G  Y  D  M  L  T  P  P  D  L  E  R  E  I  G  L  T   : G  G  N  I  F  H  G  S  M  G  L  D  S  L  F  L  M  R  P  V  K  G  W :   S  N  Y  R  T  P  I  E  G  L  Y  L  C  G  S  G  T  H  P  G  G  G  V  M  G  A  P  G  R  N  A  A  H  V  V  I  E  D  F  K  K  S  *  S  F  S  C  V  I  L  L  T  S  S  I  S  *  N  N  D  I  *  S  K  T  L  W  C  Y  S  Q  I  L  R  I  S  C  L  R  V  Y  L  K  S  I  K  Y  *  S  Q  F  D  *  S  Q  A  Q  I  S  S  I  E  E  S  S  E  *  V  N  P  L  N  V  K  N  N  V  M  L  G  T  G  K  *  V  K </second_frame>
            <third_frame>   N  H  S  L  R  D  A  L  A  *  *  M  N  M  L  L  D  L  A  H  Q  L  S  G  M  I  C  *  L  L  Q  T  S  K  E  K  L  V  *  Q  :  E  A  I  Y  S  T  D  P  W  D  *  I  L  C  F  *  C  G  Q  *  K  D   : G  Q  I  I  G  L  Q  L  K  A  Y  T  C  V  A  A  G  H  I  P  V  V  E  *  W  A  P  Q  D  A  M  L  R  M  L  S  L  R  T  S  R  N  H  E  A  S  L  V  *  F  F  *  R  V  Q  S  V  K  I  M  T  S  S  L  K  H  S  G  V  I  A  K  Y  C  E  L  V  A  *  E  S  I  *  S  L  L  N  I  E  V  S  L  T  D  H  K  R  K  S  L  R  L  K  N  L  Q  N  E  *  I  P  S  M  *  R  I  M  S  C  W  E  R  E  N  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81270" stop="81150"/>
                    <exon start="80633" stop="80567"/>
                    <exon start="80481" stop="80352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESFAQRCFSMIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGSMGLDSLFLMRPVKGWSNYRTPIEGLYLCGSGTHPGGGVMGAPGRNAAHVVIEDFKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83176" e_stop="83089"/>
            <exon e_start="81552" e_stop="81473"/>
            <exon e_start="81270" e_stop="81150"/>
            <exon e_start="80633" e_stop="80191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.533" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.644" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83176" e_stop="83089" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.533">
            <gDNA_intron_boundary i_start="83088" i_stop="81553" i_length="1536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81552" e_stop="81473" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81270" e_stop="81150" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.644" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="80633" e_stop="80191" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83176" stop="83089"/>
              <exon start="81552" stop="81473"/>
              <exon start="81270" stop="81150"/>
              <exon start="80633" stop="80191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTG : GAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA : GAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG : GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATGGTAATGGTTCTGAATGCACAAGTCCTTCAAGGACTCAAGTCCATGAAATGATGATTTTTGCTATTATCTTAACATTGAATTGCAGGTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAATTAGTTGCTTAAGAGTCTATTTGAAGTCTATTAAATATTGAAGTCAGTTTGACTGATCACAAGCGCA</gDNA_template>
            <first_frame> Q  D  A  E  N  G  L  P  S  Q  R  P  I  I  E  M  T  I  P  T  V  F  D  K  T  I  S  P  S   : G  K  H  V  I  G  L  F  I  Q  Y  T  P  Y  K  P  S  D  G  S  W  E  N  P  V  Y  R  :  E  S  F  A  Q  R  C  F  S  M  I  D  E  Y  A  P  G  F  S  S  S  I  I  G  Y  D  M  L  T  P  P  D  L  E  R  E  I  G  L  T   : G  G  N  I  F  H  G  S  M  G  L  D  S  L  F  L  M  R  P  V  K  G  W  *  W  F  *  M  H  K  S  F  K  D  S  S  P  *  N  D  D  F  C  Y  Y  L  N  I  E  L  Q  V  K  L  S  D  S  N  *  R  P  I  L  V  W  Q  R  D  T  S  R  W  W  S  N  G  R  P  R  T  Q  C  C  A  C  C  H  *  G  L  Q  E  I  M  K  L  L  L  C  D  S  F  D  E  F  N  Q  L  K  *  *  H  L  V  *  N  T  L  V  L  *  P  N  I  A  N  *  L  L  K  S  L  F  E  V  Y  *  I  L  K  S  V  *  L  I  T  S  A </first_frame>
            <second_frame>  R  M  L  K  M  A  Y  H  L  N  G  P  *  L  R  *  Q  F  P  L  S  L  T  R  Q  Y  L  H  L  :  E  S  M  *  L  V  Y  S  S  S  T  H  L  I  N  P  L  M  A  A  G  K  I  L  Y  I  E :   N  H  S  L  R  D  A  L  A  *  *  M  N  M  L  L  D  L  A  H  Q  L  S  G  M  I  C  *  L  L  Q  T  S  K  E  K  L  V  *  Q  :  E  A  I  Y  S  T  D  P  W  D  *  I  L  C  F  *  C  G  Q  *  K  D  G  N  G  S  E  C  T  S  P  S  R  T  Q  V  H  E  M  M  I  F  A  I  I  L  T  L  N  C  R  S  N  Y  R  T  P  I  E  G  L  Y  L  C  G  S  G  T  H  P  G  G  G  V  M  G  A  P  G  R  N  A  A  H  V  V  I  E  D  F  K  K  S  *  S  F  S  C  V  I  L  L  T  S  S  I  S  *  N  N  D  I  *  S  K  T  L  W  C  Y  S  Q  I  L  R  I  S  C  L  R  V  Y  L  K  S  I  K  Y  *  S  Q  F  D  *  S  Q  A   </second_frame>
            <third_frame>   G  C  *  K  W  L  T  I  S  T  A  H  N  *  D  D  N  S  H  C  L  *  Q  D  N  I  S  I  W :   K  A  C  D  W  F  I  H  P  V  H  T  L  *  T  L  *  W  Q  L  G  K  S  C  I  *   : R  I  I  R  S  E  M  L  *  H  D  R  *  I  C  S  W  I  *  L  I  N  Y  R  V  *  Y  V  D  S  S  R  P  R  K  R  N  W  F  D  R :   R  Q  Y  I  P  R  I  H  G  I  R  F  S  V  F  N  A  A  S  E  R  M  V  M  V  L  N  A  Q  V  L  Q  G  L  K  S  M  K  *  *  F  L  L  L  S  *  H  *  I  A  G  Q  I  I  G  L  Q  L  K  A  Y  T  C  V  A  A  G  H  I  P  V  V  E  *  W  A  P  Q  D  A  M  L  R  M  L  S  L  R  T  S  R  N  H  E  A  S  L  V  *  F  F  *  R  V  Q  S  V  K  I  M  T  S  S  L  K  H  S  G  V  I  A  K  Y  C  E  L  V  A  *  E  S  I  *  S  L  L  N  I  E  V  S  L  T  D  H  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83176" stop="83089"/>
                    <exon start="81552" stop="81473"/>
                    <exon start="81270" stop="81150"/>
                    <exon start="80633" stop="80563"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDAENGLPSQRPIIEMTIPTVFDKTISPSGKHVIGLFIQYTPYKPSDGSWENPVYRESFAQRCFSMIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGSMGLDSLFLMRPVKGW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80573" stop="80352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDGNGSECTSPSRTQVHEMMIFAIILTLNCRSNYRTPIEGLYLCGSGTHPGGGVMGAPGRNAAHVVIEDFKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="84021" e_stop="83920"/>
            <exon e_start="83201" e_stop="83089"/>
            <exon e_start="81552" e_stop="81473"/>
            <exon e_start="81270" e_stop="81150"/>
            <exon e_start="80633" e_stop="80567"/>
            <exon e_start="80481" e_stop="80257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="0.533" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.644" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="84021" e_stop="83920" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83919" i_stop="83202" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83201" e_stop="83089" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.533">
            <gDNA_intron_boundary i_start="83088" i_stop="81553" i_length="1536"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81552" e_stop="81473" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81472" i_stop="81271" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81270" e_stop="81150" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.644" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81149" i_stop="80634" i_length="516"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80633" e_stop="80567" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80566" i_stop="80482" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="80481" e_stop="80257" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84021" stop="83920"/>
              <exon start="83201" stop="83089"/>
              <exon start="81552" stop="81473"/>
              <exon start="81270" stop="81150"/>
              <exon start="80633" stop="80567"/>
              <exon start="80481" stop="80257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTGGCCGTTGACAGATTGCCACAGTTCCAATGCTGTAATTTAAGTCATCCAGATGCTGGTCCACAGCATGGTGGTACCATTCACATAGGGCCAGAGAG : CATAGAAGAGATGCACAGTGCTGCACAGGATGCTGAAAATGGCTTACCATCTCAACGGCCCATAATTGAGATGACAATTCCCACTGTCTTTGACAAGACAATATCTCCATCTG : GAAAGCATGTGATTGGTTTATTCATCCAGTACACACCTTATAAACCCTCTGATGGCAGCTGGGAAAATCCTGTATATAGA : GAATCATTCGCTCAGAGATGCTTTAGCATGATAGATGAATATGCTCCTGGATTTAGCTCATCAATTATCGGGTATGATATGTTGACTCCTCCAGACCTCGAAAGAGAAATTGGTTTGACAG : GAGGCAATATATTCCACGGATCCATGGGATTAGATTCTCTGTTTTTAATGCGGCCAGTGAAAGGATG : GTCAAATTATCGGACTCCAATTGAAGGCCTATACTTGTGTGGCAGCGGGACACATCCCGGTGGTGGAGTAATGGGCGCCCCAGGACGCAATGCTGCGCATGTTGTCATTGAGGACTTCAAGAAATCATGAAGCTTCTCTTGTGTGATTCTTTTGACGAGTTCAATCAGTTAAAATAATGACATCTAGTCTAAAACACTCTGGTGTTATAGCCAAATATTGCGAAT</gDNA_template>
            <first_frame> Q  F  G  R  *  Q  I  A  T  V  P  M  L  *  F  K  S  S  R  C  W  S  T  A  W  W  Y  H  S  H  R  A  R  E  :  H  R  R  D  A  Q  C  C  T  G  C  *  K  W  L  T  I  S  T  A  H  N  *  D  D  N  S  H  C  L  *  Q  D  N  I  S  I  W :   K  A  C  D  W  F  I  H  P  V  H  T  L  *  T  L  *  W  Q  L  G  K  S  C  I  *   : R  I  I  R  S  E  M  L  *  H  D  R  *  I  C  S  W  I  *  L  I  N  Y  R  V  *  Y  V  D  S  S  R  P  R  K  R  N  W  F  D  R :   R  Q  Y  I  P  R  I  H  G  I  R  F  S  V  F  N  A  A  S  E  R  M  :  V  K  L  S  D  S  N  *  R  P  I  L  V  W  Q  R  D  T  S  R  W  W  S  N  G  R  P  R  T  Q  C  C  A  C  C  H  *  G  L  Q  E  I  M  K  L  L  L  C  D  S  F  D  E  F  N  Q  L  K  *  *  H  L  V  *  N  T  L  V  L  *  P  N  I  A  N </first_frame>
            <second_frame>  N  L  A  V  D  R  L  P  Q  F  Q  C  C  N  L  S  H  P  D  A  G  P  Q  H  G  G  T  I  H  I  G  P  E  S :   I  E  E  M  H  S  A  A  Q  D  A  E  N  G  L  P  S  Q  R  P  I  I  E  M  T  I  P  T  V  F  D  K  T  I  S  P  S   : G  K  H  V  I  G  L  F  I  Q  Y  T  P  Y  K  P  S  D  G  S  W  E  N  P  V  Y  R  :  E  S  F  A  Q  R  C  F  S  M  I  D  E  Y  A  P  G  F  S  S  S  I  I  G  Y  D  M  L  T  P  P  D  L  E  R  E  I  G  L  T   : G  G  N  I  F  H  G  S  M  G  L  D  S  L  F  L  M  R  P  V  K  G  W :   S  N  Y  R  T  P  I  E  G  L  Y  L  C  G  S  G  T  H  P  G  G  G  V  M  G  A  P  G  R  N  A  A  H  V  V  I  E  D  F  K  K  S  *  S  F  S  C  V  I  L  L  T  S  S  I  S  *  N  N  D  I  *  S  K  T  L  W  C  Y  S  Q  I  L  R   </second_frame>
            <third_frame>   I  W  P  L  T  D  C  H  S  S  N  A  V  I  *  V  I  Q  M  L  V  H  S  M  V  V  P  F  T  *  G  Q  R   : A  *  K  R  C  T  V  L  H  R  M  L  K  M  A  Y  H  L  N  G  P  *  L  R  *  Q  F  P  L  S  L  T  R  Q  Y  L  H  L  :  E  S  M  *  L  V  Y  S  S  S  T  H  L  I  N  P  L  M  A  A  G  K  I  L  Y  I  E :   N  H  S  L  R  D  A  L  A  *  *  M  N  M  L  L  D  L  A  H  Q  L  S  G  M  I  C  *  L  L  Q  T  S  K  E  K  L  V  *  Q  :  E  A  I  Y  S  T  D  P  W  D  *  I  L  C  F  *  C  G  Q  *  K  D   : G  Q  I  I  G  L  Q  L  K  A  Y  T  C  V  A  A  G  H  I  P  V  V  E  *  W  A  P  Q  D  A  M  L  R  M  L  S  L  R  T  S  R  N  H  E  A  S  L  V  *  F  F  *  R  V  Q  S  V  K  I  M  T  S  S  L  K  H  S  G  V  I  A  K  Y  C  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84020" stop="83920"/>
                    <exon start="83201" stop="83089"/>
                    <exon start="81552" stop="81473"/>
                    <exon start="81270" stop="81150"/>
                    <exon start="80633" stop="80567"/>
                    <exon start="80481" stop="80352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLAVDRLPQFQCCNLSHPDAGPQHGGTIHIGPESIEEMHSAAQDAENGLPSQRPIIEMTIPTVFDKTISPSGKHVIGLFIQYTPYKPSDGSWENPVYRESFAQRCFSMIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGSMGLDSLFLMRPVKGWSNYRTPIEGLYLCGSGTHPGGGVMGAPGRNAAHVVIEDFKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="88322" PGL_stop="85220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87723" e_stop="87055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="87723" e_stop="87055" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87723" stop="87055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87710" stop="87138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTGTATGTATTAATTAATCGTGTTGATGTACTGGAAGCTGCTACTACATGTTCTTATGCTGTGTACAATTTTGTTACATTCCTCAAAAGACGTTTCGAAAAATTCTCACATCTTTAGCATAATCCCTTCTGGTGTCACTAGCTTACTAATTGTGTGTGCTTGACTGAAATATCACAGGCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACGGTAAGCTTTTTTCATGTGGGTTGTTCCAGAATGTGTCGAATGATGCATGGAGGAACAGTCAATTGCTGCATACATTGTTTGCATCTATAAAGACTTGTAATGTATATCTAGGATCCCACATATATATGATTCGGCAGTGCTGAAAAGTAAATGTTCTGTTATTCTGCATTACCATATATTTAGTGAAAATGATTGAATGTTTTAAGTGAAAAATGTGCTTACTTATGGGATCATGTAGAAGTCATGTCTTTGCAGCAAATATTGGACGTTTCACATGGCCCATGGTTTAGAAATTTCTTTTAAGTTATATGCATATATCCGCCATACATTTACTGGCAGTTCTCCATCTGCATGAAGTAGCAGGCTTGAGTACCTCTTGGACCACTCTGAAATTCTTACAAAAACATGTAGGACTAAGAGTTTTTTGAGTCTCTAGTC</gDNA_template>
            <first_frame> L  V  Y  V  L  I  N  R  V  D  V  L  E  A  A  T  T  C  S  Y  A  V  Y  N  F  V  T  F  L  K  R  R  F  E  K  F  S  H  L  *  H  N  P  F  W  C  H  *  L  T  N  C  V  C  L  T  E  I  S  Q  A  D  V  L  K  V  T  L  A  T  D  A  V  I  G  T  T  V  S  F  F  H  V  G  C  S  R  M  C  R  M  M  H  G  G  T  V  N  C  C  I  H  C  L  H  L  *  R  L  V  M  Y  I  *  D  P  T  Y  I  *  F  G  S  A  E  K  *  M  F  C  Y  S  A  L  P  Y  I  *  *  K  *  L  N  V  L  S  E  K  C  A  Y  L  W  D  H  V  E  V  M  S  L  Q  Q  I  L  D  V  S  H  G  P  W  F  R  N  F  F  *  V  I  C  I  Y  P  P  Y  I  Y  W  Q  F  S  I  C  M  K  *  Q  A  *  V  P  L  G  P  L  *  N  S  Y  K  N  M  *  D  *  E  F  F  E  S  L  V </first_frame>
            <second_frame>  W  C  M  Y  *  L  I  V  L  M  Y  W  K  L  L  L  H  V  L  M  L  C  T  I  L  L  H  S  S  K  D  V  S  K  N  S  H  I  F  S  I  I  P  S  G  V  T  S  L  L  I  V  C  A  *  L  K  Y  H  R  Q  M  F  *  K  *  L  L  Q  L  M  Q  *  *  G  P  R  *  A  F  F  M  W  V  V  P  E  C  V  E  *  C  M  E  E  Q  S  I  A  A  Y  I  V  C  I  Y  K  D  L  *  C  I  S  R  I  P  H  I  Y  D  S  A  V  L  K  S  K  C  S  V  I  L  H  Y  H  I  F  S  E  N  D  *  M  F  *  V  K  N  V  L  T  Y  G  I  M  *  K  S  C  L  C  S  K  Y  W  T  F  H  M  A  H  G  L  E  I  S  F  K  L  Y  A  Y  I  R  H  T  F  T  G  S  S  P  S  A  *  S  S  R  L  E  Y  L  L  D  H  S  E  I  L  T  K  T  C  R  T  K  S  F  L  S  L  *   </second_frame>
            <third_frame>   G  V  C  I  N  *  S  C  *  C  T  G  S  C  Y  Y  M  F  L  C  C  V  Q  F  C  Y  I  P  Q  K  T  F  R  K  I  L  T  S  L  A  *  S  L  L  V  S  L  A  Y  *  L  C  V  L  D  *  N  I  T  G  R  C  S  E  S  N  S  C  N  *  C  S  D  R  D  H  G  K  L  F  S  C  G  L  F  Q  N  V  S  N  D  A  W  R  N  S  Q  L  L  H  T  L  F  A  S  I  K  T  C  N  V  Y  L  G  S  H  I  Y  M  I  R  Q  C  *  K  V  N  V  L  L  F  C  I  T  I  Y  L  V  K  M  I  E  C  F  K  *  K  M  C  L  L  M  G  S  C  R  S  H  V  F  A  A  N  I  G  R  F  T  W  P  M  V  *  K  F  L  L  S  Y  M  H  I  S  A  I  H  L  L  A  V  L  H  L  H  E  V  A  G  L  S  T  S  W  T  T  L  K  F  L  Q  K  H  V  G  L  R  V  F  *  V  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0074A14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88322" e_stop="88288"/>
            <exon e_start="87543" e_stop="87493"/>
            <exon e_start="86840" e_stop="86758"/>
            <exon e_start="86141" e_stop="86054"/>
            <exon e_start="85583" e_stop="85542"/>
            <exon e_start="85451" e_stop="85377"/>
            <exon e_start="85249" e_stop="85220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.972" acc_prob="0.923" e_score="0.922"/>
          <exon-intron don_prob="0.562" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.966"/>
          <exon-intron don_prob="0.957" acc_prob="0.980" e_score="0.976"/>
          <exon-intron don_prob="0.953" acc_prob="0.000" e_score="0.907"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="88322" e_stop="88288" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88287" i_stop="87544" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="87543" e_stop="87493" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.923">
            <gDNA_intron_boundary i_start="87492" i_stop="86841" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="86840" e_stop="86758" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.562" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86757" i_stop="86142" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="86141" e_stop="86054" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86053" i_stop="85584" i_length="470"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="85583" e_stop="85542" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85541" i_stop="85452" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.907">
            <gDNA_exon_boundary e_start="85451" e_stop="85377" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85376" i_stop="85250" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="85249" e_stop="85220" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88322" stop="88288"/>
              <exon start="87543" stop="87493"/>
              <exon start="86840" stop="86758"/>
              <exon start="86141" stop="86054"/>
              <exon start="85583" stop="85542"/>
              <exon start="85451" stop="85377"/>
              <exon start="85249" stop="85220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCAGCTTCGAAGGTTTTGAATAACTGGTTTGAG : GCAGATGTTCTGAAAGTAACTCTTGCAACTGATGCAGTGATAGGGACCACG : GCAAGTGTTCATACGCCTGGAAGTGGATATGTATTGCTACATCACGTGATGGGAGAATCTGATGGTGATCGTGGTATTTGGTC : GTATGTTGAAGGGGGAATGGGCACTGTGTCATCGGCTATAGCTGCTGCTGCAAAGGAGGCTGGTGCAACCATATTGACAAATGCCAAA : GTCTCGAAATTGATGATTGAAGACACGGGCAGAGTGCATGGG : GTATTGCTGGCTGATGGGACCATATTGCATTCTTCTGTTGTTTTATCGAATGCAACACCATTCAAAACTTTCATG : GATCTTGTGCCAGATGATGTGCTTCCTCGT</gDNA_template>
            <first_frame> L  Q  L  R  R  F  *  I  T  G  L  R :   Q  M  F  *  K  *  L  L  Q  L  M  Q  *  *  G  P  R :   Q  V  F  I  R  L  E  V  D  M  Y  C  Y  I  T  *  W  E  N  L  M  V  I  V  V  F  G   : R  M  L  K  G  E  W  A  L  C  H  R  L  *  L  L  L  Q  R  R  L  V  Q  P  Y  *  Q  M  P  K :   S  R  N  *  *  L  K  T  R  A  E  C  M  G :   Y  C  W  L  M  G  P  Y  C  I  L  L  L  F  Y  R  M  Q  H  H  S  K  L  S  W :   I  L  C  Q  M  M  C  F  L   </first_frame>
            <second_frame>  S  S  F  E  G  F  E  *  L  V  *   : G  R  C  S  E  S  N  S  C  N  *  C  S  D  R  D  H   : G  K  C  S  Y  A  W  K  W  I  C  I  A  T  S  R  D  G  R  I  *  W  *  S  W  Y  L  V  :  V  C  *  R  G  N  G  H  C  V  I  G  Y  S  C  C  C  K  G  G  W  C  N  H  I  D  K  C  Q   : S  L  E  I  D  D  *  R  H  G  Q  S  A  W   : G  I  A  G  *  W  D  H  I  A  F  F  C  C  F  I  E  C  N  T  I  Q  N  F  H   : G  S  C  A  R  *  C  A  S  S  </second_frame>
            <third_frame>   P  A  S  K  V  L  N  N  W  F  E  :  A  D  V  L  K  V  T  L  A  T  D  A  V  I  G  T  T  :  A  S  V  H  T  P  G  S  G  Y  V  L  L  H  H  V  M  G  E  S  D  G  D  R  G  I  W  S :   Y  V  E  G  G  M  G  T  V  S  S  A  I  A  A  A  A  K  E  A  G  A  T  I  L  T  N  A  K  :  V  S  K  L  M  I  E  D  T  G  R  V  H  G  :  V  L  L  A  D  G  T  I  L  H  S  S  V  V  L  S  N  A  T  P  F  K  T  F  M  :  D  L  V  P  D  D  V  L  P  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88320" stop="88288"/>
                    <exon start="87543" stop="87493"/>
                    <exon start="86840" stop="86758"/>
                    <exon start="86141" stop="86054"/>
                    <exon start="85583" stop="85542"/>
                    <exon start="85451" stop="85377"/>
                    <exon start="85249" stop="85220"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PASKVLNNWFEADVLKVTLATDAVIGTTASVHTPGSGYVLLHHVMGESDGDRGIWSYVEGGMGTVSSAIAAAAKEAGATILTNAKVSKLMIEDTGRVHGVLLADGTILHSSVVLSNATPFKTFMDLVPDDVLPR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="90063" PGL_stop="88323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90063" e_stop="90059"/>
            <exon e_start="89967" e_stop="89579"/>
            <exon e_start="89496" e_stop="89335"/>
            <exon e_start="88675" e_stop="88496"/>
            <exon e_start="88345" e_stop="88323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.681" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.991" e_score="0.897"/>
          <exon-intron don_prob="0.970" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90063" e_stop="90059" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.681" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90058" i_stop="89968" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="89967" e_stop="89579" e_length="389"/>
          </exon>
          <intron i_serial="2" don_prob="0.816" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89578" i_stop="89497" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89496" e_stop="89335" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.989">
            <gDNA_intron_boundary i_start="89334" i_stop="88676" i_length="659"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88675" e_stop="88496" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.860" acc_prob="0.986">
            <gDNA_intron_boundary i_start="88495" i_stop="88346" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88345" e_stop="88323" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90063" stop="90059"/>
              <exon start="89967" stop="89579"/>
              <exon start="89496" stop="89341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89928" stop="89579"/>
              <exon start="89496" stop="89335"/>
              <exon start="88675" stop="88575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89927" stop="89579"/>
              <exon start="89496" stop="89335"/>
              <exon start="88675" stop="88496"/>
              <exon start="88345" stop="88325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89927" stop="89579"/>
              <exon start="89496" stop="89335"/>
              <exon start="88675" stop="88640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89924" stop="89579"/>
              <exon start="89496" stop="89341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89922" stop="89579"/>
              <exon start="89496" stop="89335"/>
              <exon start="88675" stop="88523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89876" stop="89579"/>
              <exon start="89496" stop="89335"/>
              <exon start="88675" stop="88496"/>
              <exon start="88345" stop="88323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAG : ATAAAGGAGGGAAAAGGCCAAGCAAGCTCCCAGAGTAACCAGTGTTGAAGCTCGGATAGATTCCCTATTCCCTGTTCAAAGAGTTGCTAGTGTTAAAATCAGAGATTAGGCAAAAAAAAAAAAAGTTCAAAAATGTGGAGACAGGTCCGAAAATTTAGCAGTAACAGCAGCTTCAATGCGAAAGAGAAGAAATGGGATGCTCTGATCATCGGCGGTGGTCACAACGGCCTTACAGCTGCCGCGTATCTCGCTCGTTCCGGTCTCTCTGTTGCCGTTCTCGAGAGGCGCCACATCATAGGAGGTGCTGCTGTCACTGAAGAACTCATTCCCGGTTTCAAGTTTTCTCGTTGCAGTTACCTACAAAGCCTCCTTAGACCCTGCGTTATTAA : AGAATTGGAGCTGAAGAGACATGGATTGAAGCTACTGAAAAGGAGTCCTTCATCATTCACGCCTCGTCTTGACGGACGCTATCTTCTGCTTGGTTCTGACAAGGAGCAGAACTATTCTGAGATTTCAAAGTTTTCTAAATCTGATGCTGATGCTTACTCAAG : GTATGAGAGTCAACTCGACAAGTTCTGCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATACTCGTATGAAGCACAAATTGCGTAATTCAGCGTTTTGGGCTAATTGTCTCCGTCGAGCACTCCACTTGGGACAAAAGGACCTAGT : GGACTTGATGGACCTTTTACTCG</gDNA_template>
            <first_frame> K  R :   *  R  R  E  K  A  K  Q  A  P  R  V  T  S  V  E  A  R  I  D  S  L  F  P  V  Q  R  V  A  S  V  K  I  R  D  *  A  K  K  K  K  V  Q  K  C  G  D  R  S  E  N  L  A  V  T  A  A  S  M  R  K  R  R  N  G  M  L  *  S  S  A  V  V  T  T  A  L  Q  L  P  R  I  S  L  V  P  V  S  L  L  P  F  S  R  G  A  T  S  *  E  V  L  L  S  L  K  N  S  F  P  V  S  S  F  L  V  A  V  T  Y  K  A  S  L  D  P  A  L  L   : K  N  W  S  *  R  D  M  D  *  S  Y  *  K  G  V  L  H  H  S  R  L  V  L  T  D  A  I  F  C  L  V  L  T  R  S  R  T  I  L  R  F  Q  S  F  L  N  L  M  L  M  L  T  Q   : G  M  R  V  N  S  T  S  S  A  S  S  W  T  H  F  W  I  R  L  H  Q  K  L  Y  K  A  L  H  N  S  I  L  V  *  S  T  N  C  V  I  Q  R  F  G  L  I  V  S  V  E  H  S  T  W  D  K  R  T  *   : W  T  *  W  T  F  Y  S </first_frame>
            <second_frame>  K   : D  K  G  G  K  R  P  S  K  L  P  E  *  P  V  L  K  L  G  *  I  P  Y  S  L  F  K  E  L  L  V  L  K  S  E  I  R  Q  K  K  K  K  F  K  N  V  E  T  G  P  K  I  *  Q  *  Q  Q  L  Q  C  E  R  E  E  M  G  C  S  D  H  R  R  W  S  Q  R  P  Y  S  C  R  V  S  R  S  F  R  S  L  C  C  R  S  R  E  A  P  H  H  R  R  C  C  C  H  *  R  T  H  S  R  F  Q  V  F  S  L  Q  L  P  T  K  P  P  *  T  L  R  Y  *  :  R  I  G  A  E  E  T  W  I  E  A  T  E  K  E  S  F  I  I  H  A  S  S  *  R  T  L  S  S  A  W  F  *  Q  G  A  E  L  F  *  D  F  K  V  F  *  I  *  C  *  C  L  L  K  :  V  *  E  S  T  R  Q  V  L  R  V  H  G  P  T  S  G  F  V  Y  T  R  N  S  T  R  L  F  T  T  Q  Y  S  Y  E  A  Q  I  A  *  F  S  V  L  G  *  L  S  P  S  S  T  P  L  G  T  K  G  P  S  :  G  L  D  G  P  F  T   </second_frame>
            <third_frame>   K  :  I  K  E  G  K  G  Q  A  S  S  Q  S  N  Q  C  *  S  S  D  R  F  P  I  P  C  S  K  S  C  *  C  *  N  Q  R  L  G  K  K  K  K  S  S  K  M  W  R  Q  V  R  K  F  S  S  N  S  S  F  N  A  K  E  K  K  W  D  A  L  I  I  G  G  G  H  N  G  L  T  A  A  A  Y  L  A  R  S  G  L  S  V  A  V  L  E  R  R  H  I  I  G  G  A  A  V  T  E  E  L  I  P  G  F  K  F  S  R  C  S  Y  L  Q  S  L  L  R  P  C  V  I  K :   E  L  E  L  K  R  H  G  L  K  L  L  K  R  S  P  S  S  F  T  P  R  L  D  G  R  Y  L  L  L  G  S  D  K  E  Q  N  Y  S  E  I  S  K  F  S  K  S  D  A  D  A  Y  S  R :   Y  E  S  Q  L  D  K  F  C  E  F  M  D  P  L  L  D  S  S  T  P  E  T  L  Q  G  S  S  Q  L  N  T  R  M  K  H  K  L  R  N  S  A  F  W  A  N  C  L  R  R  A  L  H  L  G  Q  K  D  L  V :   D  L  M  D  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89871" stop="89579"/>
                    <exon start="89496" stop="89335"/>
                    <exon start="88675" stop="88496"/>
                    <exon start="88345" stop="88324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRLGKKKKSSKMWRQVRKFSSNSSFNAKEKKWDALIIGGGHNGLTAAAYLARSGLSVAVLERRHIIGGAAVTEELIPGFKFSRCSYLQSLLRPCVIKELELKRHGLKLLKRSPSSFTPRLDGRYLLLGSDKEQNYSEISKFSKSDADAYSRYESQLDKFCEFMDPLLDSSTPETLQGSSQLNTRMKHKLRNSAFWANCLRRALHLGQKDLVDLMDLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="99272" PGL_stop="96111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99272" e_stop="99142"/>
            <exon e_start="96806" e_stop="96197"/>
            <exon e_start="96120" e_stop="96111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.726" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.554" e_score="0.995"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99272" e_stop="99142" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.726" acc_prob="0.967">
            <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="96806" e_stop="96197" e_length="610"/>
          </exon>
          <intron i_serial="2" don_prob="0.706" acc_prob="0.554">
            <gDNA_intron_boundary i_start="96196" i_stop="96121" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="96120" e_stop="96111" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99142"/>
              <exon start="96806" stop="96248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99142"/>
              <exon start="96806" stop="96557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99195" stop="99142"/>
              <exon start="96806" stop="96263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99195" stop="99142"/>
              <exon start="96806" stop="96402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99195" stop="99142"/>
              <exon start="96806" stop="96461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99194" stop="99142"/>
              <exon start="96806" stop="96197"/>
              <exon start="96120" stop="96111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99194" stop="99142"/>
              <exon start="96806" stop="96538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG : CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAGATT : TCAGAGAACG</gDNA_template>
            <first_frame> L  L  L  G  P  T  F  L  I  S  C  V  D  E  Q  S  P  R  K  A  P  L  T  G  E  L  R  I  S  G  G  F  *  V  C  *  G  S  D  T  E  K  A  C :   *  L  I  K  V  I  Q  W  K  L  N  S  S  A  F  S  R  L  L  E  L  V  S  R  L  G  Q  N  Q  K  V  V  S  C  T  L  S  W  V  T  A  M  R  L  N  *  P  C  L  L  Q  F  V  S  S  V  S  N  P  M  W  F  A  A  L  G  L  T  S  I  G  Y  T  N  L  L  P  L  *  G  A  V  N  L  L  K  F  T  R  A  K  V  L  C  T  L  M  K  *  *  K  R  S  R  E  R  N  Q  N  E  N  P  L  I  M  V  L  S  W  A  W  Y  F  L  *  C  *  T  I  F  L  *  L  S  F  L  F  V  I  S  *  C  N  F  V  F  *  L  L  W  Y  F  *  K  L  E  E  L  K  I  F  Y  L  G  H  G  S  C  *  T  S  Q  *  Q  F  L  Y  Q  L  F  S  S  F  Q  M  L  Q  I  S  D  G  R  C  *  *  I  C  G  L  Y  I  Q  I  :  S  E  N  </first_frame>
            <second_frame>  F  S  *  A  Q  L  F  *  F  L  V  L  T  N  R  A  L  G  K  L  H  *  P  V  N  C  G  S  P  A  V  F  R  F  A  E  V  A  I  Q  R  K  P   : A  D  *  *  K  S  S  N  G  S  *  I  L  P  L  S  Q  D  C  W  S  W  F  Q  G  *  G  R  I  R  R  S  S  L  V  P  *  A  G  L  Q  P  *  G  *  T  D  R  A  S  C  S  S  C  L  L  F  Q  T  Q  C  G  L  L  H  W  D  *  Q  V  *  G  T  P  I  C  C  L  C  K  E  L  *  T  S  *  S  L  Q  G  Q  R  Y  Y  V  H  *  *  S  D  K  K  E  A  G  K  E  I  K  M  R  T  H  *  S  W  F  F  L  G  L  G  T  F  Y  D  A  R  Q  F  S  F  N  Y  L  S  Y  L  *  F  P  N  V  I  L  F  S  D  C  F  G  I  F  K  S  *  R  S  *  R  S  F  T  L  V  T  E  V  A  K  H  L  N  D  S  F  C  I  N  F  F  H  P  F  K  C  Y  K  *  V  M  D  G  V  D  E  F  V  V  F  I  S  R  F :   Q  R  T </second_frame>
            <third_frame>   S  L  R  P  N  F  F  N  F  L  C  *  R  T  E  P  S  E  S  S  T  D  R  *  T  A  D  L  R  R  F  L  G  L  L  R  *  R  Y  R  E  S  L  :  L  I  D  K  S  H  P  M  E  A  K  F  F  R  F  L  K  I  V  G  V  G  F  K  A  R  A  E  S  E  G  R  L  L  Y  L  K  L  G  Y  S  H  E  V  E  L  T  V  P  P  A  V  R  V  F  C  F  K  P  N  V  V  C  C  T  G  I  D  K  Y  R  V  H  Q  F  A  A  S  V  R  S  C  K  P  P  E  V  Y  K  G  K  G  I  M  Y  I  D  E  V  I  K  K  K  Q  G  K  K  S  K  *  E  P  I  N  H  G  S  F  L  G  L  V  L  F  M  M  L  D  N  F  P  L  I  I  F  P  I  C  N  F  L  M  *  F  C  F  L  T  A  L  V  F  L  K  V  R  G  V  E  D  L  L  P  W  S  R  K  L  L  N  I  S  M  T  V  F  V  S  T  F  F  I  L  S  N  A  T  N  K  *  W  T  V  L  M  N  L  W  S  L  Y  P  D   : F  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99159" stop="99142"/>
                    <exon start="96806" stop="96477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYRESLLIDKSHPMEAKFFRFLKIVGVGFKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKPNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="104884" PGL_stop="99362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104884" e_stop="104798"/>
            <exon e_start="104662" e_stop="104591"/>
            <exon e_start="104297" e_stop="104223"/>
            <exon e_start="103450" e_stop="103367"/>
            <exon e_start="102821" e_stop="102752"/>
            <exon e_start="102647" e_stop="102556"/>
            <exon e_start="101106" e_stop="101065"/>
            <exon e_start="100992" e_stop="100912"/>
            <exon e_start="100813" e_stop="100587"/>
            <exon e_start="99410" e_stop="99362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.154" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.755"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104884" e_stop="104798" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104662" e_stop="104591" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104297" e_stop="104223" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103450" e_stop="103367" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102821" e_stop="102752" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.154" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102751" i_stop="102648" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102647" e_stop="102556" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102555" i_stop="101107" i_length="1449"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101106" e_stop="101065" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.910" acc_prob="0.738">
            <gDNA_intron_boundary i_start="101064" i_stop="100993" i_length="72"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100992" e_stop="100912" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.704" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="0.981">
            <gDNA_exon_boundary e_start="100813" e_stop="100587" e_length="227"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100586" i_stop="99411" i_length="1176"/>
          </intron>
          <exon e_serial="10" e_score="0.755">
            <gDNA_exon_boundary e_start="99410" e_stop="99362" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104884" stop="104798"/>
              <exon start="104662" stop="104591"/>
              <exon start="104297" stop="104223"/>
              <exon start="103450" stop="103367"/>
              <exon start="102821" stop="102752"/>
              <exon start="102647" stop="102556"/>
              <exon start="101106" stop="101065"/>
              <exon start="100992" stop="100912"/>
              <exon start="100813" stop="100738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104798"/>
              <exon start="104662" stop="104591"/>
              <exon start="104297" stop="104223"/>
              <exon start="103450" stop="103367"/>
              <exon start="102821" stop="102752"/>
              <exon start="102647" stop="102556"/>
              <exon start="101106" stop="101065"/>
              <exon start="100992" stop="100912"/>
              <exon start="100813" stop="100602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104855" stop="104798"/>
              <exon start="104662" stop="104591"/>
              <exon start="104297" stop="104223"/>
              <exon start="103450" stop="103367"/>
              <exon start="102821" stop="102752"/>
              <exon start="102647" stop="102556"/>
              <exon start="101106" stop="101065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104809" stop="104798"/>
              <exon start="104662" stop="104591"/>
              <exon start="104297" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104269" stop="104223"/>
              <exon start="103450" stop="103367"/>
              <exon start="102821" stop="102752"/>
              <exon start="102647" stop="102556"/>
              <exon start="101106" stop="101065"/>
              <exon start="100992" stop="100912"/>
              <exon start="100813" stop="100587"/>
              <exon start="99410" stop="99362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATCTCCAAAGCTAACCGTTGCCCTTTGAAGAAGAGGTGAGAAAGAGAGCGCCAAACAAATGGCTCCGAAGAACTTGTCGTTCAAG : ATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATG : GGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG : GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA : GTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAA : GTTATTCTGGTGGTCAAGCCACAGTTGTAGGATCTGTTGTTGTGACCAACCTTACAAAGGGGATAAGAAAAGGAGCTTGGGAAAGGTCCGAG : GTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTG : ATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTG : ATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAAAGACATTCTTCTTTC : AAATTAAAAAATTAAAAAAAAGAAGAAAAGAATAATCATTAAAAGAAAA</gDNA_template>
            <first_frame> L  S  P  K  L  T  V  A  L  *  R  R  G  E  K  E  S  A  K  Q  M  A  P  K  N  L  S  F  K  :  I  I  L  G  S  S  S  M  A  R  R  K  I  L  A  D  M  G  Y  E  F  T  V  M  :  G  A  D  I  D  E  K  S  I  R  K  D  N  A  E  E  L  V  I  A  L  A  E  A  K  :  A  D  A  I  M  S  R  L  K  T  T  D  Q  L  D  E  N  T  H  S  T  L  L  I  T  A  D  T  :  V  A  V  Y  E  G  I  V  R  E  K  P  S  S  K  E  E  A  R  Q  F  I  K   : S  Y  S  G  G  Q  A  T  V  V  G  S  V  V  V  T  N  L  T  K  G  I  R  K  G  A  W  E  R  S  E  :  V  Y  F  H  D  I  P  D  E  I  I  D  S  L  :  I  E  E  G  I  I  L  N  V  A  G  G  L  M  L  E  H  P  L  T  L  P  F  V  D  T  L  :  I  G  T  A  D  S  V  M  G  L  P  R  N  L  T  E  K  L  I  E  E  A  L  *  L  L  E  F  H  K  *  I  N  I  L  S  I  T  S  P  E  M  Y  L  I  T  R  F  L  S  L  *  T  C  L  S  E  V  N  I  G  N  M  H  E  R  K  Y  W  L  K  D  I  L  L  S :   N  *  K  I  K  K  K  K  K  R  I  I  I  K  R  K </first_frame>
            <second_frame>  Y  L  Q  S  *  P  L  P  F  E  E  E  V  R  K  R  A  P  N  K  W  L  R  R  T  C  R  S  R :   *  S  W  V  L  P  Q  W  H  V  A  K  Y  *  R  T  W  V  M  N  L  Q  *  W :   V  L  T  L  M  K  R  A  L  G  K  I  M  Q  R  N  *  *  *  L  *  Q  R  Q  R :   Q  M  L  L  C  Q  G  S  K  Q  L  I  S  W  T  K  I  P  I  P  L  C  *  L  L  Q  I  Q :   W  R  F  T  K  E  L  L  E  K  N  H  Q  A  R  K  K  R  V  S  S  S  K  :  V  I  L  V  V  K  P  Q  L  *  D  L  L  L  *  P  T  L  Q  R  G  *  E  K  E  L  G  K  G  P  R :   Y  I  S  M  T  Y  L  M  R  L  L  T  A  * :   L  R  R  E  *  Y  L  M  L  L  V  A  *  C  L  N  I  H  *  R  C  P  L  L  T  L  * :   L  E  L  L  T  V  L  W  D  S  Q  E  I  S  L  K  N  L  S  K  K  P  S  S  C  W  N  S  T  S  E  *  I  S  F  R  S  P  L  L  K  C  T  *  L  L  D  F  *  V  Y  K  L  V  F  L  K  *  T  L  E  T  C  T  K  G  N  T  G  *  K  T  F  F  F   : Q  I  K  K  L  K  K  R  R  K  E  *  S  L  K  E   </second_frame>
            <third_frame>   I  S  K  A  N  R  C  P  L  K  K  R  *  E  R  E  R  Q  T  N  G  S  E  E  L  V  V  Q   : D  N  L  G  F  F  L  N  G  T  S  Q  N  I  S  G  H  G  L  *  I  Y  S  N   : G  C  *  H  *  *  K  E  H  *  E  R  *  C  R  G  I  S  D  S  S  S  R  G  K   : G  R  C  Y  Y  V  K  A  Q  N  N  *  S  V  G  R  K  Y  P  F  H  S  V  N  Y  C  R  Y   : S  G  G  L  R  R  N  C  *  R  K  T  I  K  Q  G  R  S  A  S  V  H  Q  K :   L  F  W  W  S  S  H  S  C  R  I  C  C  C  D  Q  P  Y  K  G  D  K  K  R  S  L  G  K  V  R   : G  I  F  P  *  H  T  *  *  D  Y  *  Q  P   : D  *  G  G  N  N  T  *  C  C  W  W  L  N  A  *  T  S  I  D  A  A  L  C  *  H  S   : D  W  N  C  *  Q  C  Y  G  T  P  K  K  S  H  *  K  T  Y  R  R  S  P  L  A  A  G  I  P  Q  V  N  K  Y  P  F  D  H  L  S  *  N  V  L  D  Y  *  I  F  E  F  I  N  L  S  F  *  S  E  H  W  K  H  A  R  K  E  I  L  A  E  R  H  S  S  F  :  K  L  K  N  *  K  K  E  E  K  N  N  H  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104854" stop="104798"/>
                    <exon start="104662" stop="104591"/>
                    <exon start="104297" stop="104223"/>
                    <exon start="103450" stop="103367"/>
                    <exon start="102821" stop="102752"/>
                    <exon start="102647" stop="102556"/>
                    <exon start="101106" stop="101065"/>
                    <exon start="100992" stop="100912"/>
                    <exon start="100813" stop="100742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGEKESAKQMAPKNLSFKIILGSSSMARRKILADMGYEFTVMGADIDEKSIRKDNAEELVIALAEAKADAIMSRLKTTDQLDENTHSTLLITADTVAVYEGIVREKPSSKEEARQFIKSYSGGQATVVGSVVVTNLTKGIRKGAWERSEVYFHDIPDEIIDSLIEEGIILNVAGGLMLEHPLTLPFVDTLIGTADSVMGLPRNLTEKLIEEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104809" e_stop="104798"/>
            <exon e_start="104662" e_stop="104591"/>
            <exon e_start="104297" e_stop="104223"/>
            <exon e_start="103450" e_stop="103367"/>
            <exon e_start="102821" e_stop="102710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.944"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.947"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104809" e_stop="104798" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="104797" i_stop="104663" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="104662" e_stop="104591" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104590" i_stop="104298" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="104297" e_stop="104223" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104222" i_stop="103451" i_length="772"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="103450" e_stop="103367" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103366" i_stop="102822" i_length="545"/>
          </intron>
          <exon e_serial="5" e_score="0.911">
            <gDNA_exon_boundary e_start="102821" e_stop="102710" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104809" stop="104798"/>
              <exon start="104662" stop="104591"/>
              <exon start="104297" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104644" stop="104591"/>
              <exon start="104297" stop="104223"/>
              <exon start="103450" stop="103367"/>
              <exon start="102821" stop="102710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCGTTCAAG : ATAATCTTGGGTTCTTCCTCAATGGCACGTCGCAAAATATTAGCGGACATGGGTTATGAATTTACAGTAATG : GGTGCTGACATTGATGAAAAGAGCATTAGGAAAGATAATGCAGAGGAATTAGTGATAGCTCTAGCAGAGGCAAAG : GCAGATGCTATTATGTCAAGGCTCAAAACAACTGATCAGTTGGACGAAAATACCCATTCCACTCTGTTAATTACTGCAGATACA : GTGGCGGTTTACGAAGGAATTGTTAGAGAAAAACCATCAAGCAAGGAAGAAGCGCGTCAGTTCATCAAAAGTATGTTTGTATTTGCCGTCTGCAGTTCCTCCAGTATCTCAG</gDNA_template>
            <first_frame> L  S  F  K  :  I  I  L  G  S  S  S  M  A  R  R  K  I  L  A  D  M  G  Y  E  F  T  V  M  :  G  A  D  I  D  E  K  S  I  R  K  D  N  A  E  E  L  V  I  A  L  A  E  A  K  :  A  D  A  I  M  S  R  L  K  T  T  D  Q  L  D  E  N  T  H  S  T  L  L  I  T  A  D  T  :  V  A  V  Y  E  G  I  V  R  E  K  P  S  S  K  E  E  A  R  Q  F  I  K  S  M  F  V  F  A  V  C  S  S  S  S  I  S  </first_frame>
            <second_frame>  C  R  S  R :   *  S  W  V  L  P  Q  W  H  V  A  K  Y  *  R  T  W  V  M  N  L  Q  *  W :   V  L  T  L  M  K  R  A  L  G  K  I  M  Q  R  N  *  *  *  L  *  Q  R  Q  R :   Q  M  L  L  C  Q  G  S  K  Q  L  I  S  W  T  K  I  P  I  P  L  C  *  L  L  Q  I  Q :   W  R  F  T  K  E  L  L  E  K  N  H  Q  A  R  K  K  R  V  S  S  S  K  V  C  L  Y  L  P  S  A  V  P  P  V  S  Q </second_frame>
            <third_frame>   V  V  Q   : D  N  L  G  F  F  L  N  G  T  S  Q  N  I  S  G  H  G  L  *  I  Y  S  N   : G  C  *  H  *  *  K  E  H  *  E  R  *  C  R  G  I  S  D  S  S  S  R  G  K   : G  R  C  Y  Y  V  K  A  Q  N  N  *  S  V  G  R  K  Y  P  F  H  S  V  N  Y  C  R  Y   : S  G  G  L  R  R  N  C  *  R  K  T  I  K  Q  G  R  S  A  S  V  H  Q  K  Y  V  C  I  C  R  L  Q  F  L  Q  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104809" stop="104798"/>
                    <exon start="104662" stop="104591"/>
                    <exon start="104297" stop="104223"/>
                    <exon start="103450" stop="103367"/>
                    <exon start="102821" stop="102711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFKIILGSSSMARRKILADMGYEFTVMGADIDEKSIRKDNAEELVIALAEAKADAIMSRLKTTDQLDENTHSTLLITADTVAVYEGIVREKPSSKEEARQFIKSMFVFAVCSSSSIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101107" e_stop="100912"/>
            <exon e_start="100813" e_stop="100497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.704" acc_prob="0.999" e_score="0.934"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="101107" e_stop="100912" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.704" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100911" i_stop="100814" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.880">
            <gDNA_exon_boundary e_start="100813" e_stop="100497" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101107" stop="100912"/>
              <exon start="100813" stop="100497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467801" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTATATTTCCATGACATACCTGATGAGATTATTGACAGCCTGGTAAATATGACTCTGTTCTTAAATAGGGGATGTTCTTTACCTGCAACATTAACTATTAGTACATTTGTATAGATTGAGGAGGGAATAATACTTAATGTTGCTGGTGGCTTAATGCTTGAACATCCATTGACGCTGCCCTTTGTTGACACTCTG : ATTGGAACTGCTGACAGTGTTATGGGACTCCCAAGAAATCTCACTGAAAAACTTATCGAAGAAGCCCTCTAGCTGCTGGAATTCCACAAGTGAATAAATATCCTTTCGATCACCTCTCCTGAAATGTACTTGATTACTAGATTTTTGAGTTTATAAACTTGTCTTTCTGAAGTGAACATTGGAAACATGCACGAAAGGAAATACTGGCTGAAAGACATTCTTCTTTCATTATCACTGTTAAATTATTTGATTTGATGTAAACATCGTGATCAGGAAAGATTTTGATACTCTTACAACTTGGAAATTGATTCAATAAG</gDNA_template>
            <first_frame> G  I  F  P  *  H  T  *  *  D  Y  *  Q  P  G  K  Y  D  S  V  L  K  *  G  M  F  F  T  C  N  I  N  Y  *  Y  I  C  I  D  *  G  G  N  N  T  *  C  C  W  W  L  N  A  *  T  S  I  D  A  A  L  C  *  H  S   : D  W  N  C  *  Q  C  Y  G  T  P  K  K  S  H  *  K  T  Y  R  R  S  P  L  A  A  G  I  P  Q  V  N  K  Y  P  F  D  H  L  S  *  N  V  L  D  Y  *  I  F  E  F  I  N  L  S  F  *  S  E  H  W  K  H  A  R  K  E  I  L  A  E  R  H  S  S  F  I  I  T  V  K  L  F  D  L  M  *  T  S  *  S  G  K  I  L  I  L  L  Q  L  G  N  *  F  N  K </first_frame>
            <second_frame>  V  Y  F  H  D  I  P  D  E  I  I  D  S  L  V  N  M  T  L  F  L  N  R  G  C  S  L  P  A  T  L  T  I  S  T  F  V  *  I  E  E  G  I  I  L  N  V  A  G  G  L  M  L  E  H  P  L  T  L  P  F  V  D  T  L  :  I  G  T  A  D  S  V  M  G  L  P  R  N  L  T  E  K  L  I  E  E  A  L  *  L  L  E  F  H  K  *  I  N  I  L  S  I  T  S  P  E  M  Y  L  I  T  R  F  L  S  L  *  T  C  L  S  E  V  N  I  G  N  M  H  E  R  K  Y  W  L  K  D  I  L  L  S  L  S  L  L  N  Y  L  I  *  C  K  H  R  D  Q  E  R  F  *  Y  S  Y  N  L  E  I  D  S  I   </second_frame>
            <third_frame>   Y  I  S  M  T  Y  L  M  R  L  L  T  A  W  *  I  *  L  C  S  *  I  G  D  V  L  Y  L  Q  H  *  L  L  V  H  L  Y  R  L  R  R  E  *  Y  L  M  L  L  V  A  *  C  L  N  I  H  *  R  C  P  L  L  T  L  * :   L  E  L  L  T  V  L  W  D  S  Q  E  I  S  L  K  N  L  S  K  K  P  S  S  C  W  N  S  T  S  E  *  I  S  F  R  S  P  L  L  K  C  T  *  L  L  D  F  *  V  Y  K  L  V  F  L  K  *  T  L  E  T  C  T  K  G  N  T  G  *  K  T  F  F  F  H  Y  H  C  *  I  I  *  F  D  V  N  I  V  I  R  K  D  F  D  T  L  T  T  W  K  L  I  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0074A14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="101909" e_stop="101484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="101909" e_stop="101484" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101909" stop="101484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGTGGAAAGAGACCTTAACCTTGACTTATCTACTAATTTAAACAGAGGCACAAGTTGAGTCAATAATGGAGAGAGACTATGAATAGACTGATTTCTATTTAGCACACGTGAGCATTACAACTCCAGGCATAACAAGGGAGTATTTTTTGAAAATTGCTTAGGTTTCTAAATTTTCATCGCTGCTAGGCTTTGGCATAGAGAATTGTATCTGCTATTACCTCACCATCATGATCTTTGAACCATCTTAATCCTGTCAAGTATGATCAGAATGGTTGTTGTTACAGTTGTACTACTCAATACTGTCAAACTGGAAGTGCAGAGATCTTTTGTTTCGTATTACGAAGGCAGGAAAGAGTGAATGCTGATGAAAACTGGTGTATTTACATCTTTATGTGAAGGGCAGAAAGAGGGTGAATGTGGATGG</gDNA_template>
            <first_frame> *  V  E  R  D  L  N  L  D  L  S  T  N  L  N  R  G  T  S  *  V  N  N  G  E  R  L  *  I  D  *  F  L  F  S  T  R  E  H  Y  N  S  R  H  N  K  G  V  F  F  E  N  C  L  G  F  *  I  F  I  A  A  R  L  W  H  R  E  L  Y  L  L  L  P  H  H  H  D  L  *  T  I  L  I  L  S  S  M  I  R  M  V  V  V  T  V  V  L  L  N  T  V  K  L  E  V  Q  R  S  F  V  S  Y  Y  E  G  R  K  E  *  M  L  M  K  T  G  V  F  T  S  L  C  E  G  Q  K  E  G  E  C  G  W </first_frame>
            <second_frame>  E  W  K  E  T  L  T  L  T  Y  L  L  I  *  T  E  A  Q  V  E  S  I  M  E  R  D  Y  E  *  T  D  F  Y  L  A  H  V  S  I  T  T  P  G  I  T  R  E  Y  F  L  K  I  A  *  V  S  K  F  S  S  L  L  G  F  G  I  E  N  C  I  C  Y  Y  L  T  I  M  I  F  E  P  S  *  S  C  Q  V  *  S  E  W  L  L  L  Q  L  Y  Y  S  I  L  S  N  W  K  C  R  D  L  L  F  R  I  T  K  A  G  K  S  E  C  *  *  K  L  V  Y  L  H  L  Y  V  K  G  R  K  R  V  N  V  D   </second_frame>
            <third_frame>   S  G  K  R  P  *  P  *  L  I  Y  *  F  K  Q  R  H  K  L  S  Q  *  W  R  E  T  M  N  R  L  I  S  I  *  H  T  *  A  L  Q  L  Q  A  *  Q  G  S  I  F  *  K  L  L  R  F  L  N  F  H  R  C  *  A  L  A  *  R  I  V  S  A  I  T  S  P  S  *  S  L  N  H  L  N  P  V  K  Y  D  Q  N  G  C  C  Y  S  C  T  T  Q  Y  C  Q  T  G  S  A  E  I  F  C  F  V  L  R  R  Q  E  R  V  N  A  D  E  N  W  C  I  Y  I  F  M  *  R  A  E  R  G  *  M  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0074A14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="108626" PGL_stop="106617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107572" e_stop="107470"/>
            <exon e_start="107376" e_stop="107131"/>
            <exon e_start="107061" e_stop="106617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.789" e_score="0.922"/>
          <exon-intron don_prob="0.960" acc_prob="0.453" e_score="0.967"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="107572" e_stop="107470" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="107376" e_stop="107131" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.453">
            <gDNA_intron_boundary i_start="107130" i_stop="107062" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="107061" e_stop="106617" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107572" stop="107470"/>
              <exon start="107376" stop="107131"/>
              <exon start="107061" stop="106959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107152" stop="107131"/>
              <exon start="107061" stop="106617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGCATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAG : AATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATAGACTTCAATGGATGGTCATTGAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCATTATCCAGAGAGGCTTGCTATAGTTGTTCTTTATAGTCCACCTAGATTTTTCGAGGCATTTTGGAAG : GTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTTGGGGGAAAAGCCACATTGAATTACGATCATGAAGAATTTTCCAAATTGATGGTTCAAGAAGATGTCAAGACTGCTAAATTTTGGGGCCTTGACGATCGAGGTGACATCTTCCAAAAGCAAAGGTGATGCCTGGCCAATGACTGTTGCATCATGTGCAAGCTAAGCAAGTCCACAATAACTAAACGGTGTATTGTCAAATCTTATTTTATAAAATAAAAATTCTTGAACAGTAAACATATGCCAATAATTAAATGCGTGTAATTTTGAGTCACTTATTGCATATAGTTAACATAATTAGTTTAATTCCGTTTGAAAAAAAGTA</gDNA_template>
            <first_frame> T  A  *  S  G  T  *  K  *  N  W  Q  S  F  *  G  *  F  S  R  P  T  W  Q  N  R  P  Y  N  E  A  W  E  T   : E  Y  I  I  S  G  R  *  Y  S  S  S  S  L  S  D  G  E  C  Y  P  *  P  A  R  R  P  R  T  N  V  L  V  D  R  L  Q  W  M  V  I  E  H  Q  H  S  H  *  N  C  K  R  Y  Y  L  H  F  A  E  S  L  S  R  E  A  C  Y  S  C  S  L  *  S  T  *  I  F  R  G  I  L  E   : G  S  E  I  F  Y  *  F  E  N  I  *  E  D  Q  V  C  V  S  Q  *  Q  R  *  R  G  V  D  E  D  F  F  R  Y  *  E  S  S  K  *  V  W  G  K  S  H  I  E  L  R  S  *  R  I  F  Q  I  D  G  S  R  R  C  Q  D  C  *  I  L  G  P  *  R  S  R  *  H  L  P  K  A  K  V  M  P  G  Q  *  L  L  H  H  V  Q  A  K  Q  V  H  N  N  *  T  V  Y  C  Q  I  L  F  Y  K  I  K  I  L  E  Q  *  T  Y  A  N  N  *  M  R  V  I  L  S  H  L  L  H  I  V  N  I  I  S  L  I  P  F  E  K  K   </first_frame>
            <second_frame>  Q  H  E  V  A  H  E  S  E  T  G  K  V  S  K  G  N  F  Q  D  R  L  G  R  T  V  L  I  M  R  P  G  K  Q  :  N  T  S  S  P  E  G  N  I  R  H  L  V  Y  L  M  E  S  A  I  L  N  L  P  E  G  Q  E  Q  M  S  W  L  I  D  F  N  G  W  S  L  N  T  N  I  P  I  K  T  A  R  D  I  I  Y  I  L  Q  N  H  Y  P  E  R  L  A  I  V  V  L  Y  S  P  P  R  F  F  E  A  F  W  K  :  V  V  K  Y  F  I  D  S  K  T  F  E  K  I  K  F  V  Y  P  N  N  K  D  S  V  E  L  M  K  T  F  F  D  T  E  N  L  P  S  E  F  G  G  K  A  T  L  N  Y  D  H  E  E  F  S  K  L  M  V  Q  E  D  V  K  T  A  K  F  W  G  L  D  D  R  G  D  I  F  Q  K  Q  R  *  C  L  A  N  D  C  C  I  M  C  K  L  S  K  S  T  I  T  K  R  C  I  V  K  S  Y  F  I  K  *  K  F  L  N  S  K  H  M  P  I  I  K  C  V  *  F  *  V  T  Y  C  I  *  L  T  *  L  V  *  F  R  L  K  K  S  </second_frame>
            <third_frame>   S  M  K  W  H  M  K  V  K  L  A  K  F  L  R  V  I  F  K  T  D  L  A  E  P  S  L  *  *  G  L  G  N  R :   I  H  H  L  R  K  V  I  F  V  I  *  S  I  *  W  R  V  L  S  L  T  C  Q  K  A  K  N  K  C  L  G  *  *  T  S  M  D  G  H  *  T  P  T  F  P  L  K  L  Q  E  I  L  S  T  F  C  R  I  I  I  Q  R  G  L  L  *  L  F  F  I  V  H  L  D  F  S  R  H  F  G  R :   *  *  N  I  L  L  I  R  K  H  L  R  R  S  S  L  C  I  P  I  T  K  I  A  W  S  *  *  R  L  F  S  I  L  R  I  F  Q  V  S  L  G  E  K  P  H  *  I  T  I  M  K  N  F  P  N  *  W  F  K  K  M  S  R  L  L  N  F  G  A  L  T  I  E  V  T  S  S  K  S  K  G  D  A  W  P  M  T  V  A  S  C  A  S  *  A  S  P  Q  *  L  N  G  V  L  S  N  L  I  L  *  N  K  N  S  *  T  V  N  I  C  Q  *  L  N  A  C  N  F  E  S  L  I  A  Y  S  *  H  N  *  F  N  S  V  *  K  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107571" stop="107470"/>
                    <exon start="107376" stop="107131"/>
                    <exon start="107061" stop="106813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHEVAHESETGKVSKGNFQDRLGRTVLIMRPGKQNTSSPEGNIRHLVYLMESAILNLPEGQEQMSWLIDFNGWSLNTNIPIKTARDIIYILQNHYPERLAIVVLYSPPRFFEAFWKVVKYFIDSKTFEKIKFVYPNNKDSVELMKTFFDTENLPSEFGGKATLNYDHEEFSKLMVQEDVKTAKFWGLDDRGDIFQKQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108442" e_stop="108370"/>
            <exon e_start="108200" e_stop="108133"/>
            <exon e_start="107907" e_stop="107731"/>
            <exon e_start="107568" e_stop="107470"/>
            <exon e_start="107376" e_stop="107131"/>
            <exon e_start="107061" e_stop="106617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.580" e_score="0.836"/>
          <exon-intron don_prob="0.982" acc_prob="0.857" e_score="0.882"/>
          <exon-intron don_prob="0.981" acc_prob="0.977" e_score="0.938"/>
          <exon-intron don_prob="1.000" acc_prob="0.789" e_score="0.919"/>
          <exon-intron don_prob="0.960" acc_prob="0.453" e_score="0.967"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.836">
            <gDNA_exon_boundary e_start="108442" e_stop="108370" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.580">
            <gDNA_intron_boundary i_start="108369" i_stop="108201" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="108200" e_stop="108133" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.857">
            <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="107907" e_stop="107731" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.977">
            <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="0.919">
            <gDNA_exon_boundary e_start="107568" e_stop="107470" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="107376" e_stop="107131" e_length="246"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.453">
            <gDNA_intron_boundary i_start="107130" i_stop="107062" i_length="69"/>
          </intron>
          <exon e_serial="6" e_score="0.901">
            <gDNA_exon_boundary e_start="107061" e_stop="106617" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108442" stop="108370"/>
              <exon start="108200" stop="108133"/>
              <exon start="107907" stop="107731"/>
              <exon start="107568" stop="107470"/>
              <exon start="107376" stop="107131"/>
              <exon start="107061" stop="106905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107152" stop="107131"/>
              <exon start="107061" stop="106617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCTCTCTTTTGTATGATATCTTTCAAGTCCCAAATCTTTCTGCAATCTTCCTAATTCCTTTCCAAGAAAA : GAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAG : GTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGG : CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAG : AATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCTGCCAGAAGGCCAAGAACAAATGTCTTGGTTGATAGACTTCAATGGATGGTCATTGAACACCAACATTCCCATTAAAACTGCAAGAGATATTATCTACATTTTGCAGAATCATTATCCAGAGAGGCTTGCTATAGTTGTTCTTTATAGTCCACCTAGATTTTTCGAGGCATTTTGGAAG : GTAGTGAAATATTTTATTGATTCGAAAACATTTGAGAAGATCAAGTTTGTGTATCCCAATAACAAAGATAGCGTGGAGTTGATGAAGACTTTTTTCGATACTGAGAATCTTCCAAGTGAGTTTGGGGGAAAAGCCACATTGAATTACGATCATGAAGAATTTTCCAAATTGATGGTTCAAGAAGATGTCAAGACTGCTAAATTTTGGGGCCTTGACGATCGAGGTGACATCTTCCAAAAGCAAAGGTGATGCCTGGCCAATGACTGTTGCATCATGTGCAAGCTAAGCAAGTCCACAATAACTAAACGGTGTATTGTCAAATCTTATTTTATAAAATAAAAATTCTTGAACAGTAAACATATGCCAATAATTAAATGCGTGTAATTTTGAGTCACTTATTGCATATAGTTAACATAATTAGTTTAATTCCGTTTGAAAAAAAGTA</gDNA_template>
            <first_frame> I  S  L  F  C  M  I  S  F  K  S  Q  I  F  L  Q  S  S  *  F  L  S  K  K   : R  I  M  F  R  R  K  S  S  R  T  I  Q  A  D  D  S  A  A  R  G  A  K  :  V  S  E  L  R  E  A  V  G  P  L  S  G  R  N  L  K  F  C  T  D  V  C  L  R  Q  Y  L  E  A  R  N  W  N  L  D  K  A  K  K  M  L  E  E  T  L  K  W  R  S  T  Y  K  P  E  E  I  R  W  :  H  E  V  A  H  E  S  E  T  G  K  V  S  K  G  N  F  Q  D  R  L  G  R  T  V  L  I  M  R  P  G  K  Q  :  N  T  S  S  P  E  G  N  I  R  H  L  V  Y  L  M  E  S  A  I  L  N  L  P  E  G  Q  E  Q  M  S  W  L  I  D  F  N  G  W  S  L  N  T  N  I  P  I  K  T  A  R  D  I  I  Y  I  L  Q  N  H  Y  P  E  R  L  A  I  V  V  L  Y  S  P  P  R  F  F  E  A  F  W  K  :  V  V  K  Y  F  I  D  S  K  T  F  E  K  I  K  F  V  Y  P  N  N  K  D  S  V  E  L  M  K  T  F  F  D  T  E  N  L  P  S  E  F  G  G  K  A  T  L  N  Y  D  H  E  E  F  S  K  L  M  V  Q  E  D  V  K  T  A  K  F  W  G  L  D  D  R  G  D  I  F  Q  K  Q  R  *  C  L  A  N  D  C  C  I  M  C  K  L  S  K  S  T  I  T  K  R  C  I  V  K  S  Y  F  I  K  *  K  F  L  N  S  K  H  M  P  I  I  K  C  V  *  F  *  V  T  Y  C  I  *  L  T  *  L  V  *  F  R  L  K  K  S  </first_frame>
            <second_frame>  F  L  S  F  V  *  Y  L  S  S  P  K  S  F  C  N  L  P  N  S  F  P  R  K  :  E  S  C  S  G  E  S  R  L  A  Q  F  R  Q  M  I  L  Q  P  V  V  Q  R :   L  A  S  *  E  R  L  L  D  L  S  L  G  E  T  *  S  S  V  P  M  C  V  *  G  N  T  *  K  L  E  I  G  T  L  T  R  Q  K  K  C  S  K  R  L  S  S  G  D  P  P  I  S  L  K  K  F  V  G :   M  K  W  H  M  K  V  K  L  A  K  F  L  R  V  I  F  K  T  D  L  A  E  P  S  L  *  *  G  L  G  N  R :   I  H  H  L  R  K  V  I  F  V  I  *  S  I  *  W  R  V  L  S  L  T  C  Q  K  A  K  N  K  C  L  G  *  *  T  S  M  D  G  H  *  T  P  T  F  P  L  K  L  Q  E  I  L  S  T  F  C  R  I  I  I  Q  R  G  L  L  *  L  F  F  I  V  H  L  D  F  S  R  H  F  G  R :   *  *  N  I  L  L  I  R  K  H  L  R  R  S  S  L  C  I  P  I  T  K  I  A  W  S  *  *  R  L  F  S  I  L  R  I  F  Q  V  S  L  G  E  K  P  H  *  I  T  I  M  K  N  F  P  N  *  W  F  K  K  M  S  R  L  L  N  F  G  A  L  T  I  E  V  T  S  S  K  S  K  G  D  A  W  P  M  T  V  A  S  C  A  S  *  A  S  P  Q  *  L  N  G  V  L  S  N  L  I  L  *  N  K  N  S  *  T  V  N  I  C  Q  *  L  N  A  C  N  F  E  S  L  I  A  Y  S  *  H  N  *  F  N  S  V  *  K  K  V </second_frame>
            <third_frame>   F  S  L  L  Y  D  I  F  Q  V  P  N  L  S  A  I  F  L  I  P  F  Q  E  K :   N  H  V  P  E  K  V  V  S  H  N  S  G  R  *  F  C  S  P  W  C  K   : G  *  R  V  K  R  G  C  W  T  S  L  W  A  K  L  K  V  L  Y  R  C  V  S  E  A  I  L  R  S  S  K  L  E  P  *  Q  G  K  K  N  A  R  R  D  S  Q  V  E  I  H  L  *  A  *  R  N  S  L   : A  *  S  G  T  *  K  *  N  W  Q  S  F  *  G  *  F  S  R  P  T  W  Q  N  R  P  Y  N  E  A  W  E  T   : E  Y  I  I  S  G  R  *  Y  S  S  S  S  L  S  D  G  E  C  Y  P  *  P  A  R  R  P  R  T  N  V  L  V  D  R  L  Q  W  M  V  I  E  H  Q  H  S  H  *  N  C  K  R  Y  Y  L  H  F  A  E  S  L  S  R  E  A  C  Y  S  C  S  L  *  S  T  *  I  F  R  G  I  L  E   : G  S  E  I  F  Y  *  F  E  N  I  *  E  D  Q  V  C  V  S  Q  *  Q  R  *  R  G  V  D  E  D  F  F  R  Y  *  E  S  S  K  *  V  W  G  K  S  H  I  E  L  R  S  *  R  I  F  Q  I  D  G  S  R  R  C  Q  D  C  *  I  L  G  P  *  R  S  R  *  H  L  P  K  A  K  V  M  P  G  Q  *  L  L  H  H  V  Q  A  K  Q  V  H  N  N  *  T  V  Y  C  Q  I  L  F  Y  K  I  K  I  L  E  Q  *  T  Y  A  N  N  *  M  R  V  I  L  S  H  L  L  H  I  V  N  I  I  S  L  I  P  F  E  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108385" stop="108370"/>
                    <exon start="108200" stop="108133"/>
                    <exon start="107907" stop="107731"/>
                    <exon start="107568" stop="107470"/>
                    <exon start="107376" stop="107131"/>
                    <exon start="107061" stop="106813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKKRIMFRRKSSRTIQADDSAARGAKVSELREAVGPLSGRNLKFCTDVCLRQYLEARNWNLDKAKKMLEETLKWRSTYKPEEIRWHEVAHESETGKVSKGNFQDRLGRTVLIMRPGKQNTSSPEGNIRHLVYLMESAILNLPEGQEQMSWLIDFNGWSLNTNIPIKTARDIIYILQNHYPERLAIVVLYSPPRFFEAFWKVVKYFIDSKTFEKIKFVYPNNKDSVELMKTFFDTENLPSEFGGKATLNYDHEEFSKLMVQEDVKTAKFWGLDDRGDIFQKQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108535" e_stop="108455"/>
            <exon e_start="108200" e_stop="108133"/>
            <exon e_start="107907" e_stop="107731"/>
            <exon e_start="107568" e_stop="107309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.580" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108535" e_stop="108455" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.580">
            <gDNA_intron_boundary i_start="108454" i_stop="108201" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108200" e_stop="108133" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.857">
            <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107907" e_stop="107731" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.977">
            <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107568" e_stop="107309" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108535" stop="108455"/>
              <exon start="108200" stop="108133"/>
              <exon start="107907" stop="107731"/>
              <exon start="107568" stop="107309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAG : GAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAG : GTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGG : CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAGGTTAGTGTTCTTACTTTTTAAATTAAAATCTAATCTATATATCTGAAGTTTACAGACTGGAGTATCCGAATTGTTCTGTTTCATGGATGACAGAATACATCATCTCCGGAAGGTAATATTCGTCATCTAGTCTATCTGATGGAGAGTGCTATCCTTAACCT</gDNA_template>
            <first_frame> Q  L  Q  V  V  L  Y  T  F  P  T  R  I  N  F  Y  C  V  H  V  E  *  S  R  G  S  Q  :  E  S  C  S  G  E  S  R  L  A  Q  F  R  Q  M  I  L  Q  P  V  V  Q  R :   L  A  S  *  E  R  L  L  D  L  S  L  G  E  T  *  S  S  V  P  M  C  V  *  G  N  T  *  K  L  E  I  G  T  L  T  R  Q  K  K  C  S  K  R  L  S  S  G  D  P  P  I  S  L  K  K  F  V  G :   M  K  W  H  M  K  V  K  L  A  K  F  L  R  V  I  F  K  T  D  L  A  E  P  S  L  *  *  G  L  G  N  R  L  V  F  L  L  F  K  L  K  S  N  L  Y  I  *  S  L  Q  T  G  V  S  E  L  F  C  F  M  D  D  R  I  H  H  L  R  K  V  I  F  V  I  *  S  I  *  W  R  V  L  S  L  T  </first_frame>
            <second_frame>  N  F  K  W  C  C  I  L  F  P  Q  E  L  I  S  I  V  F  M  *  S  D  R  G  D  H  R :   N  H  V  P  E  K  V  V  S  H  N  S  G  R  *  F  C  S  P  W  C  K   : G  *  R  V  K  R  G  C  W  T  S  L  W  A  K  L  K  V  L  Y  R  C  V  S  E  A  I  L  R  S  S  K  L  E  P  *  Q  G  K  K  N  A  R  R  D  S  Q  V  E  I  H  L  *  A  *  R  N  S  L   : A  *  S  G  T  *  K  *  N  W  Q  S  F  *  G  *  F  S  R  P  T  W  Q  N  R  P  Y  N  E  A  W  E  T  G  *  C  S  Y  F  L  N  *  N  L  I  Y  I  S  E  V  Y  R  L  E  Y  P  N  C  S  V  S  W  M  T  E  Y  I  I  S  G  R  *  Y  S  S  S  S  L  S  D  G  E  C  Y  P  *  P </second_frame>
            <third_frame>   T  S  S  G  V  V  Y  F  S  H  K  N  *  F  L  L  C  S  C  R  V  I  E  G  I  T   : G  I  M  F  R  R  K  S  S  R  T  I  Q  A  D  D  S  A  A  R  G  A  K  :  V  S  E  L  R  E  A  V  G  P  L  S  G  R  N  L  K  F  C  T  D  V  C  L  R  Q  Y  L  E  A  R  N  W  N  L  D  K  A  K  K  M  L  E  E  T  L  K  W  R  S  T  Y  K  P  E  E  I  R  W  :  H  E  V  A  H  E  S  E  T  G  K  V  S  K  G  N  F  Q  D  R  L  G  R  T  V  L  I  M  R  P  G  K  Q  V  S  V  L  T  F  *  I  K  I  *  S  I  Y  L  K  F  T  D  W  S  I  R  I  V  L  F  H  G  *  Q  N  T  S  S  P  E  G  N  I  R  H  L  V  Y  L  M  E  S  A  I  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108494" stop="108455"/>
                    <exon start="108200" stop="108133"/>
                    <exon start="107907" stop="107731"/>
                    <exon start="107568" stop="107449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLCSCRVIEGITGIMFRRKSSRTIQADDSAARGAKVSELREAVGPLSGRNLKFCTDVCLRQYLEARNWNLDKAKKMLEETLKWRSTYKPEEIRWHEVAHESETGKVSKGNFQDRLGRTVLIMRPGKQVSVLTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="108626" e_stop="108455"/>
            <exon e_start="108200" e_stop="108133"/>
            <exon e_start="107907" e_stop="107731"/>
            <exon e_start="107568" e_stop="107470"/>
            <exon e_start="107376" e_stop="107366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.580" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.789" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="108626" e_stop="108455" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.580">
            <gDNA_intron_boundary i_start="108454" i_stop="108201" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108200" e_stop="108133" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.857">
            <gDNA_intron_boundary i_start="108132" i_stop="107908" i_length="225"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107907" e_stop="107731" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.977">
            <gDNA_intron_boundary i_start="107730" i_stop="107569" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="107568" e_stop="107470" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="107469" i_stop="107377" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107376" e_stop="107366" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108626" stop="108455"/>
              <exon start="108200" stop="108133"/>
              <exon start="107907" stop="107731"/>
              <exon start="107568" stop="107470"/>
              <exon start="107376" stop="107366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTACAAGCGTGTGAAAAATTCCATTTTCCGTCTGTTCCCTCTTTGTAACTGTTCAAGTGAATGATCACCTACTTTGCGTGATATCTCTACAACTTCAAGTGGTGTTGTATACTTTTCCCACAAGAATTAATTTCTATTGTGTTCATGTAGAGTGATCGAGGGGATCACAG : GAATCATGTTCCGGAGAAAGTCGTCTCGCACAATTCAGGCAGATGATTCTGCAGCCCGTGGTGCAAAG : GTTAGCGAGTTAAGAGAGGCTGTTGGACCTCTCTCTGGGCGAAACTTAAAGTTCTGTACCGATGTGTGTCTGAGGCAATACTTAGAAGCTCGAAATTGGAACCTTGACAAGGCAAAAAAAATGCTCGAAGAGACTCTCAAGTGGAGATCCACCTATAAGCCTGAAGAAATTCGTTGG : CATGAAGTGGCACATGAAAGTGAAACTGGCAAAGTTTCTAAGGGTAATTTTCAAGACCGACTTGGCAGAACCGTCCTTATAATGAGGCCTGGGAAACAG : AATACATCATC</gDNA_template>
            <first_frame> D  Y  K  R  V  K  N  S  I  F  R  L  F  P  L  C  N  C  S  S  E  *  S  P  T  L  R  D  I  S  T  T  S  S  G  V  V  Y  F  S  H  K  N  *  F  L  L  C  S  C  R  V  I  E  G  I  T   : G  I  M  F  R  R  K  S  S  R  T  I  Q  A  D  D  S  A  A  R  G  A  K  :  V  S  E  L  R  E  A  V  G  P  L  S  G  R  N  L  K  F  C  T  D  V  C  L  R  Q  Y  L  E  A  R  N  W  N  L  D  K  A  K  K  M  L  E  E  T  L  K  W  R  S  T  Y  K  P  E  E  I  R  W  :  H  E  V  A  H  E  S  E  T  G  K  V  S  K  G  N  F  Q  D  R  L  G  R  T  V  L  I  M  R  P  G  K  Q  :  N  T  S   </first_frame>
            <second_frame>  T  T  S  V  *  K  I  P  F  S  V  C  S  L  F  V  T  V  Q  V  N  D  H  L  L  C  V  I  S  L  Q  L  Q  V  V  L  Y  T  F  P  T  R  I  N  F  Y  C  V  H  V  E  *  S  R  G  S  Q  :  E  S  C  S  G  E  S  R  L  A  Q  F  R  Q  M  I  L  Q  P  V  V  Q  R :   L  A  S  *  E  R  L  L  D  L  S  L  G  E  T  *  S  S  V  P  M  C  V  *  G  N  T  *  K  L  E  I  G  T  L  T  R  Q  K  K  C  S  K  R  L  S  S  G  D  P  P  I  S  L  K  K  F  V  G :   M  K  W  H  M  K  V  K  L  A  K  F  L  R  V  I  F  K  T  D  L  A  E  P  S  L  *  *  G  L  G  N  R :   I  H  H  </second_frame>
            <third_frame>   L  Q  A  C  E  K  F  H  F  P  S  V  P  S  L  *  L  F  K  *  M  I  T  Y  F  A  *  Y  L  Y  N  F  K  W  C  C  I  L  F  P  Q  E  L  I  S  I  V  F  M  *  S  D  R  G  D  H  R :   N  H  V  P  E  K  V  V  S  H  N  S  G  R  *  F  C  S  P  W  C  K   : G  *  R  V  K  R  G  C  W  T  S  L  W  A  K  L  K  V  L  Y  R  C  V  S  E  A  I  L  R  S  S  K  L  E  P  *  Q  G  K  K  N  A  R  R  D  S  Q  V  E  I  H  L  *  A  *  R  N  S  L   : A  *  S  G  T  *  K  *  N  W  Q  S  F  *  G  *  F  S  R  P  T  W  Q  N  R  P  Y  N  E  A  W  E  T   : E  Y  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108494" stop="108455"/>
                    <exon start="108200" stop="108133"/>
                    <exon start="107907" stop="107731"/>
                    <exon start="107568" stop="107470"/>
                    <exon start="107376" stop="107368"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLCSCRVIEGITGIMFRRKSSRTIQADDSAARGAKVSELREAVGPLSGRNLKFCTDVCLRQYLEARNWNLDKAKKMLEETLKWRSTYKPEEIRWHEVAHESETGKVSKGNFQDRLGRTVLIMRPGKQNTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="109908" PGL_stop="109314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109908" e_stop="109314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109908" e_stop="109314" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109908" stop="109314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGAGAGATCAAAATGAACTCTCGAGATGGTCTGTGAATACCTATTAGTATTTGCTAACGTGGTAAATGGCGATAATCAATCTAACCAAGAGATGTTACGGCAATTCACTTGAATATGTTCCAAGTTCATGAAAACAGAGGAAGTGGATGTTATTACAGAAATTATTTCAGTAGCTGAGGTGGGTACAGCTCCAAGTAGTGAGGAGACACTTCTTATTAGGCATGCATGTAATGTAGTTGCCGAAATTCAACAGACGATTATAAACCAACACCTAAGGAATCTTTGTGGATTGTGGAATTGCTTGCTGAGATGTTGACTTGTTAAGGAGACGCAGGCCTAGTATGGTGCAGTATTTTGTACTTTCCTCCTCCTCTATGGAGACGGACTCTGGCAAGTCAGAACAGATCATTGATCTAATCCATCGGAGATTCAAGGGTATAGCAGTAGTACCACCAAATGTAAGTGTTTATCCAACAATGACTACTAGGTTGTGTAAAGACTGCAGAGAGGAGAAAGATCATTTGCCGTTGAGGGTGTATAAGTGATATTTGGCATTTGCCAATTGTGAATATAAGATCCGTGAAGCTTATTGT</gDNA_template>
            <first_frame> P  E  R  S  K  *  T  L  E  M  V  C  E  Y  L  L  V  F  A  N  V  V  N  G  D  N  Q  S  N  Q  E  M  L  R  Q  F  T  *  I  C  S  K  F  M  K  T  E  E  V  D  V  I  T  E  I  I  S  V  A  E  V  G  T  A  P  S  S  E  E  T  L  L  I  R  H  A  C  N  V  V  A  E  I  Q  Q  T  I  I  N  Q  H  L  R  N  L  C  G  L  W  N  C  L  L  R  C  *  L  V  K  E  T  Q  A  *  Y  G  A  V  F  C  T  F  L  L  L  Y  G  D  G  L  W  Q  V  R  T  D  H  *  S  N  P  S  E  I  Q  G  Y  S  S  S  T  T  K  C  K  C  L  S  N  N  D  Y  *  V  V  *  R  L  Q  R  G  E  R  S  F  A  V  E  G  V  *  V  I  F  G  I  C  Q  L  *  I  *  D  P  *  S  L  L  </first_frame>
            <second_frame>  R  R  D  Q  N  E  L  S  R  W  S  V  N  T  Y  *  Y  L  L  T  W  *  M  A  I  I  N  L  T  K  R  C  Y  G  N  S  L  E  Y  V  P  S  S  *  K  Q  R  K  W  M  L  L  Q  K  L  F  Q  *  L  R  W  V  Q  L  Q  V  V  R  R  H  F  L  L  G  M  H  V  M  *  L  P  K  F  N  R  R  L  *  T  N  T  *  G  I  F  V  D  C  G  I  A  C  *  D  V  D  L  L  R  R  R  R  P  S  M  V  Q  Y  F  V  L  S  S  S  S  M  E  T  D  S  G  K  S  E  Q  I  I  D  L  I  H  R  R  F  K  G  I  A  V  V  P  P  N  V  S  V  Y  P  T  M  T  T  R  L  C  K  D  C  R  E  E  K  D  H  L  P  L  R  V  Y  K  *  Y  L  A  F  A  N  C  E  Y  K  I  R  E  A  Y  C </second_frame>
            <third_frame>   G  E  I  K  M  N  S  R  D  G  L  *  I  P  I  S  I  C  *  R  G  K  W  R  *  S  I  *  P  R  D  V  T  A  I  H  L  N  M  F  Q  V  H  E  N  R  G  S  G  C  Y  Y  R  N  Y  F  S  S  *  G  G  Y  S  S  K  *  *  G  D  T  S  Y  *  A  C  M  *  C  S  C  R  N  S  T  D  D  Y  K  P  T  P  K  E  S  L  W  I  V  E  L  L  A  E  M  L  T  C  *  G  D  A  G  L  V  W  C  S  I  L  Y  F  P  P  P  L  W  R  R  T  L  A  S  Q  N  R  S  L  I  *  S  I  G  D  S  R  V  *  Q  *  Y  H  Q  M  *  V  F  I  Q  Q  *  L  L  G  C  V  K  T  A  E  R  R  K  I  I  C  R  *  G  C  I  S  D  I  W  H  L  P  I  V  N  I  R  S  V  K  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109598" stop="109362"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVDLLRRRRPSMVQYFVLSSSSMETDSGKSEQIIDLIHRRFKGIAVVPPNVSVYPTMTTRLCKDCREEKDHLPLRVYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109794" stop="109591"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSKFMKTEEVDVITEIISVAEVGTAPSSEETLLIRHACNVVAEIQQTIINQHLRNLCGLWNCLLRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 134 chains have been computed
$ 
$ memory statistics:
$ 420304 bytes spliced alignments in total
$ 102 spliced alignments have been stored
$ 4120 bytes was the average size of a spliced alignment
$ 35952 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1563 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 150 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:48:44
-->
