<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:45:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g36960" ref_strand="+" ref_description="C2_At4g36960">
      <seq>cctcgtgccgggggtttgaaggagctgagcggcgcgaggaagagcgagcgagccgagcggagcggagtgagagagcgaattagggttttggtaatcggaatcaagaaggaagaatcatcgtgtgtgagcgattcatttatagagagaggtgtggtgagatcgcgagagcgagttgagtgtatatccaacgatttccactctccgctaatcaatttgtcagacaagtttttgttaccatgtcggagaggaagcttgtggttttaggcatcccatgggacgtggatacagaaggtctaagggaatatatgatcaaatatggagacttggaggactgtattgtgatgaaggaacgtgctactggtcgttctcgtggattcggctatgtcacatttgctacagttgaggatgctaagaatgcattgtctaaggagcactttcttggaaacagaatgctagaagtgaaagtggcgacaccgaaggaggagatgagggctcctgcaaagaaagtgaccaggattttcgttgctaggattcctccgtctgtgtctgaagctactttcagaggttattttgagaagtacggtgaaataacagatctatacatgccaaaggatccatctaccaagggacatcgtggaattgggtttattacttttgcaaatgctgaatcagttgatgatctgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="31107" stop="36409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31448" g_stop="31502" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="108" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31503" i_stop="31656" i_length="154">
            <donor d_prob="0.282" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31657" g_stop="31805" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="257" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31888" g_stop="31977" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="347" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917">
            <donor d_prob="0.902" d_score="0.94"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33895" g_stop="33960" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="413" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34139" g_stop="34204" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="479" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34473" g_stop="34558" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="565" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34653" g_stop="34698" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="611" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34805" g_stop="34859" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="666" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36086" g_stop="36109" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="690" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="C2_At4g36960" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g36960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31448" e_stop="31502"/>
          <exon e_start="31657" e_stop="31805"/>
          <exon e_start="31888" e_stop="31977"/>
          <exon e_start="33895" e_stop="33960"/>
          <exon e_start="34139" e_stop="34204"/>
          <exon e_start="34473" e_stop="34558"/>
          <exon e_start="34653" e_stop="34698"/>
          <exon e_start="34805" e_stop="34859"/>
          <exon e_start="36086" e_stop="36109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAGGTCAGTGGAGCGCGTAAATCTAATTTAGTACTCGTTGTGATTTTAATTTCTTTGGTATCCGAAGATCTTAGAGAAATTGGTGAGTTTGTTCTGAAATATGATGATGATGATGATATTTGTGTGTGAGAAAGAGGTGTGTGTCTGTTACCTGCAGGAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAATGAGATATCAAATCTGGGTTACAGAAGGTCATATATTTATCATTTGGTGCACAGCTTGCAGCTTTTAGTGCATTTAGCTTTCTTGTGAAAAACTTAGGGCTGTTATATCATTTATGGTGTAACAAAAACATAAGGATTTCCATTGCCCCAAACTATGTTATAGTTGTTAGGAGAAGGTTGTTGCTTCGCAGTTCGCTACTTGGAAAATTTAGCAGAACTATCCGCTTAAGAGATGTCACTTTTGGAATTCAACCAAGAACGTGTCCCAAACTGGTTTATTTCTTGTTAACTACATTGGTGGGCACATGAGAACTGGGTCTCAGGAGAAAATCTTGTCGAATAACTAAATGGCAATATTAGGGTTTTTAAAAACAAACGTGATTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGTCTCTCTTCTTCAATTGTCTAGTAGATTCAAGATTGCGTTGGGTTCTTTCCTGGTAAAGTAAACCAGATTATCAAATGCGATTGCCTTTGGCCAGAGATTTTGCGCCTATTACTCGTAAGGCGCAACCCTGCAAAGGCGATCAATGGCGAGAAATGATGAGTGGTGAGGTGGCACCATTGTTGCCCTTTTATTTTATTCTTTTTGAAAAAAAACAAACGTGCTTAATAATTAAATGGCAATATTAGTGTTTTTAAAAACAAACGTGACTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGACTCTCTTCTCCTCAGCTTCAGCCTTTAGTTACGTCTTCTTCTTCTTTCTCCTCTGCTTTGCAGCTTCTCTTCTGCCATAGTCAGCTGCTCTTTTTTTTGCTTCTTCATCTTCTTCTCTTCTTTTTTTTAGTAGGTCAATGTGCCCAGCTTCCTATTACTCTGTTAGTGATTCCTCTGTTCTTATTTTATGGTCTGTTTTTTTTAATTTTCTGCAGATGCAAATCTGCCTTTCTACAGAAAAATTCCAGGTCCTATTTTAATTTTTGTCCAACTCAACTTAGTCATACAAGTTCTTGGGTTCTAGTCTTGTTCGTCAAATTGTCTCATGAATTATTGAGTCATTCAAGTTCTATGGTTAGTTTTTAAATTGAAATATTTGCCAATATGGTATTGCTACTGAGATACTGGTTATTTATATATGCATTAAATATCTTCAGTTTTTTATATTAATTGGCGCCTCAATTCAAAGAGGCCAGCACCTCGCCACGAGGCAAGACATGCCCTTGTCGTCTTTCGACTTAACTTGCATTCCATTCCCAATTTTTGTGATGCTCTTTCCTTTCTAGTCATTCTTTAATAATGACATTTTTCAATATTTAGTAACATTTCAACTTTAAGCTACCAATTTTATCCCTAATGAAATGATTTATATGATTTATAGGCACACAAAAATCTATAGCTTATATTAGACCACAAGTTCCAAAAGTTTTCCTTTGTTTCTTAAATTCCGTGCAAAATCTAATACGTTCACATAAATTGGGACGTAGGGAGTACCAAACATTGCCATGTTTGTGTATTTTGATTCTGGTGTGTTTTGCCAATGATTTTATTGATTGCTTTTGTGACAATTTTAAACATAAAATCAACAGTGTATCAGAAGATTGATCCGTTTTACTAATTTCCCAAAAGTGTGCTGTCTGGTTTATATAGTTAATATATATTTGCATTTTAGTGCTTTGAAAGTAAATGTGCTTTCTGTTGCTAAATTTCTTATCATCTGACTGAAGAAGACTAATGAGTATTGATCTTCATCTAGGAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAGGTGATTTTGGTTTTAATTTGGTTTTCATGTCATTGTTGCAATCATATTTGCATACTACCCTCCAGTTAAACTTTCTTACAATGTATGGTCTTGTTCTTCGTCCTTGGTATAGCTTATTTATGATTTTGTGGTTTTGATGCAAACTTGATTCCTACACTTGTGGATTTGTATGATGCAGAATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAGGTGCAATGCTCTTACTCTTAATGAAAAAACTTCTCTTTGTTACTTTAGTATTTCATCCAATGCTGTACTTTTACTATCTAGGCCAACTATTAATATATTGTGGTGGCTTGAGTTGATTAAAATGGAATGGTTATCATGGTTCATATTGATTTCTTCATTTGGTTGGACATGAAAATTGCATTATAACAAGTGAAAGCCCATTTTATAATCGTTGTGCCTCTAAATACTTTGTAAGGTCTAATACTGATGCTACTAATTTTTTTGGCAGGAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGGGTATTTGTGAAGGATTGCTTTATTAAGATTATTTCTAGCTGGTTGGTTGCTTCATTATTAGAATTTAATATCCTTATTTGATTTTCTTTTGCAGTTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAGGTTCCCCTGTCTCGTTGTGTCATTATTACTTTATATATGTGCTGTCATGTTCTGGCATTAAATCATATGATTCATTATGTACTAATTAATCTTACCCAATCTGCAGGATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTGGTATGTCTCCCATCCTAATTTTTTGCAGTTTTTTCTTTATTTTCCAGGTATTTTCTGGCCACATTCAGTTATTCCTCTGCCTAATATCTAGTTATTGGGAACAGTTTTTTAATAAAACATAGGAACTTATTTTTTGGCAGGAATTGTATCTTGTAGGAACTTCCTGGGTAAATCCTATGTATCCATCTTATATTTCAGGGAGGGAAAACATTGAGTGTTGTAGTTGCAATGTTTTTCTCTGAAGGTGTCTTTAGTGCATTCACTCGGACAAGCGCTCAATTAGTGCAGTTAATTATTAAAATCTGGATCAATCAGTTTACCTTGATTCAGCATAAGTTCTTTTAATTTAATTGTTATAGATATGAAGATCTTCAACCTTTATGCATTAATCCATTACTCCAAGAAATTCACATTCTTGATATTGTAACATTTTTTGTCATTTTGGAATAACAGCTCACTGGTCAGGTGTTTAACCCGTGACCCAACAACGGTTAAAACAATTAGGAGGTTAATAATTTCCCCTTAATTCCACACTCTGTATATTGCCTCTCGGGGTGCTTATTTTGAGCCTGATAATGGGGTGATGATAAATGAATTTGACATTTGAAGAGTTTCTACTGTAGATCAGCATAATATTTGATTTGATCTCAGCCTTGATTCTTTCGCTAGTTATTTTGGTGTCAACTTGTATACCCCCACCCCATCCGAAACTGTTCCACTGGCAGTCTAGTTATACATTCTAGGTATTTTGATTGACATTCATCTTGTTTCTGGAATATAATTAACTAATAAAGTGTGTCTCTCTTAAGTGCACGCAGAGGTCCTGAGATCGAATCTCACCGCCACCCTATCAAAAAGAATTTCCATGTGCTTGGCCATGAAAAAGAATCAGGCCCGCACGTGAGGGGACGTGATGAGAGTAGAATTAACTAGTAAAAGTGCGTTCTCTCTAAAAATATTAAGCTTTTAGATTAGATGGTCACCCACTTCAACACATCTTTTATCACCTTTAGAAGTCTTGTAATTGTGCTGTCTCAGAAGAATCAGTTTCGTTTAATTTTTTCTAGGGATGTGGTAGCTACCACCTTGTTTTTATTTTTTCACCCAGGTAGAGGCAGGGAAGTTCCCTACATGCATGCCTATCATGTCTTCTGCAGACTCTAGTTTCTAGTCAGTTTTGTAATGATTTTCCTTTGAATTGAGTGGCTTTTGGTTTCTTTGCCCAGAATCAGTTGATGATCTGATGAGTG</genome_strand>
        <mrna_strand>CGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGGTAATCGGAATCAAGAAG..........................................................................................................................................................GAAGAATCATCGTGTGTGAGCGATTCATTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCAACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTTGTTACCATGTCGGAGAGGAAGCTTGTG..................................................................................GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGACTTGGAGGACTGTATTGTGATGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG..................................................................................................................................................................................AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG............................................................................................................................................................................................................................................................................GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG..............................................................................................TTATTTTGAGAAGTACGGTGAAATAACAGATCTATACATGCCAAAG..........................................................................................................GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTTGATGATCTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG167-F" ref_strand="+" ref_description="TG167-F">
      <seq>aagaatcgtcttgtgtgagcgattcgtttatagagagaggtgtggtgagatcgcgagagcgagttgagtgtatatcctacgatttccactctccgctaatcaatttgtcagacaagttttcgttaccatgtcggagaagaagcttgtggtaagttttggtttctttcttgattttcaaggcatgtttgtctttgattgcaatcttaatgtgattgcttcttgatttttaggttttaggcatcccatgggacgtggatacagaaggtctaagggaatatatgatcaaatatggagatttagaggattgtattgtgatgaaggtcagtctacgcagctaccttgacttttatgatatgcattgtttcagatatactgtagttccaaagactttcatgacctaactgtgtgcagtcttgttttttgtgttgacaatgttgtttctttttttgtttgttaattgtgcttgtatcagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="31358" stop="32433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31658" g_stop="32133" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="TG167-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="TG167-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31658" e_stop="32133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAA</genome_strand>
        <mrna_strand>AAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG167-R" ref_strand="+" ref_description="TG167-R">
      <seq>aaaattaaaaaaaacagaccataaaataagaacagaggaatcactaacagagtaataggaagctgggcacattgacctactaaaaaaaagaagagaagaagatgaagaagcaaaaaaaagagcagctgactatggcagaagagaagctgcaaagcagaggagaaagaagaagaagacgtaactaaaggctgaagctgaggagaagagagtcacgtgtcaaagagaaaattgaagaagagagtcgtgagtcacgtttgtttttaaaaacactaatattgccatttaattattaagcacgtttgttttttttcaaaaagaataaaataaaagggcaacaatggtgccacctcaccactcatcatttctcgccattgatcgcctttgcagggttgcgccttacgagtaataggcgcaaaatctctggccaaaggcaatcgcatttgataatctggtttactttaccaggaaagaacccaacgcaatcttgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="33367" stop="32277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33067" g_stop="32577" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="TG167-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="TG167-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33067" e_stop="32577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAAAAACAGACCATAAAATAAGAACAGAGGAATCACTAACAGAGTAATAGGAAGCTGGGCACATTGACCTACTAAAAAAAAGAAGAGAAGAAGATGAAGAAGCAAAAAAAAGAGCAGCTGACTATGGCAGAAGAGAAGCTGCAAAGCAGAGGAGAAAGAAGAAGAAGACGTAACTAAAGGCTGAAGCTGAGGAGAAGAGAGTCACGTGTCAAAGAGAAAATTGAAGAAGAGAGTCGTGAGTCACGTTTGTTTTTAAAAACACTAATATTGCCATTTAATTATTAAGCACGTTTGTTTTTTTTCAAAAAGAATAAAATAAAAGGGCAACAATGGTGCCACCTCACCACTCATCATTTCTCGCCATTGATCGCCTTTGCAGGGTTGCGCCTTACGAGTAATAGGCGCAAAATCTCTGGCCAAAGGCAATCGCATTTGATAATCTGGTTTACTTTACCAGGAAAGAACCCAACGCAATCTTGAATC</genome_strand>
        <mrna_strand>AAAATTAAAAAAAACAGACCATAAAATAAGAACAGAGGAATCACTAACAGAGTAATAGGAAGCTGGGCACATTGACCTACTAAAAAAAAGAAGAGAAGAAGATGAAGAAGCAAAAAAAAGAGCAGCTGACTATGGCAGAAGAGAAGCTGCAAAGCAGAGGAGAAAGAAGAAGAAGACGTAACTAAAGGCTGAAGCTGAGGAGAAGAGAGTCACGTGTCAAAGAGAAAATTGAAGAAGAGAGTCGTGAGTCACGTTTGTTTTTAAAAACACTAATATTGCCATTTAATTATTAAGCACGTTTGTTTTTTTTCAAAAAGAATAAAATAAAAGGGCAACAATGGTGCCACCTCACCACTCATCATTTCTCGCCATTGATCGCCTTTGCAGGGTTGCGCCTTACGAGTAATAGGCGCAAAATCTCTGGCCAAAGGCAATCGCATTTGATAATCTGGTTTACTTTACCAGGAAAGAACCCAACGCAATCTTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g36970" ref_strand="+" ref_description="C2_At4g36970">
      <seq>gacgttcaggttgacaaaggaaccacaatttcagggctatctcggaaaagccaggtgaggaaacccaagaaagaattaccagacgtgagtgagcctatttcaccgtgggatgttgcagatggggcaaagagtatgtcaaagtcgcaaagagaggaagccaggatcgctgcttgggagaacttgcagaaggccaaagcagaagcagaaatccaaaagcttgagatgaaactagaaaagaggaggtcagcatccatggataagattctgaacaagcttagacatgctcaggtgaaggcccaagatatgagacgtgcaacttcggaaagtcagcctcgaagggattcccacagaatcattccgtttcgggagtatttcaagattgcatcatttggcagttgctttgtttgccgtatcccttaattcatgtacaggcacgaggcgttctaaagtaatatttgcaagttcttgtcaaatctagagcgtcagttgttattggtgatctaaaggaacacacaactcattactgactgctttatgcagtattcgacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="40334" stop="38785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40034" g_stop="39895" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299">
            <donor d_prob="0.934" d_score="0.84"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39595" g_stop="39514" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="222" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39425" g_stop="39094" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="542" r_length="320" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="C2_At4g36970" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g36970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40034" e_stop="39895"/>
          <exon e_start="39595" e_stop="39514"/>
          <exon e_start="39425" e_stop="39094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAAGTAAGCATGCATTTCCGGCTTGTTTTTGCTTCTTATGTTTGCTAATGCAGCTATCTTGTCCTTCCATACAAATATTCCACATTTTCAAGGGAACTGACATGCCCTTATGTGTAACTCCACAAGTTTGTAGAAACTATTTGGGCCAAGTAGCGAAATACACAACCTTCACCTCACTGCTAGATTCACAAATAAAAGATTGATGGACATTCTTTTGGCAATACATATGTATACTTATAGTAGGTGCATTTGTCAAGGAGCAAAAATACTATATATGAATAACGGTTGTGCATTTTGTGAAGGTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAGGTTCGTTAGACATATATCCAGACACTGATACTTGTTTGAAAGAATAGGACGAGCATAAAAGAAGACTTAACTATTATTTGCATTTCAGATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTCATTGTAGGTGGTTCTTGTCAAATCTAGAGCCTCAGTTGTTAATGGTAATCTAAAGGAACAGACAACTCGTTGCTGACTGCTTTATTCAGTA</genome_strand>
        <mrna_strand>GACGTTCAGGTTGACAAAGGAACCACAATTTCAGGGCTATCTCGGAAAAGCCAGGTGAGGAAACCCAAGAAAGAATTACCAGACGTGAGTGAGCCTATTTCACCGTGGGATGTTGCAGATGGGGCAAAGAGTATGTCAAA...........................................................................................................................................................................................................................................................................................................GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG........................................................................................ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACATGCTCAGGTGAAGGCCCAAGATATGAGACGTGCAACTTCGGAAAGTCAGCCTCGAAGGGATTCCCACAGAATCATTCCGTTTCGGGAGTATTTCAAGATTGCATCATTTGGCAGTTGCTTTGTTTGCCGTATCCCTT-AATTCATGTACAGGCACGAGGCGTTCTAAAGT--AA-T--A-T--TTGCA---AGTTCTTGTCAAATCTAGAGCGTCAGTTGTTATTGGTGATCTAAAGGAACACACAACTCATTACTGACTGCTTTATGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g67030" ref_strand="+" ref_description="C2_At5g67030">
      <seq>ctggctagaatggctgcaatcatggcatctacttacaaggcttatcttggcgtcggacttggtccactatcatttttgacgcagtatagaataccacatcctggaagagttggtggaagagtttttattgacttgggaatgcctctgatgttaagttgggttctaggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgcggggaatggctcttctggtttagaagctattgttttaagcagagatgaggatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaaggaaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggaaattgtacagcattttatagcaaacatcaggcgttgagcaatttaagcatagttaattttgtatactgtaggttttagaaaagatccataaacaagacaccatgaaagaaaatacagagattctcctaaagaaatctggagaatgtcatggacattgtctcttattctaccattgctaaaaatatattacttctctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="52801" stop="55565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53101" g_stop="53172" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53274" g_stop="53377" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="176" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359">
            <donor d_prob="0.085" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="287" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54057" g_stop="54143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="429" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54604" g_stop="54692" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54784" g_stop="54868" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="603" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54946" g_stop="55252" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="910" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="911" polyA_stop="928"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="C2_At5g67030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g67030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53101" e_stop="53172"/>
          <exon e_start="53274" e_stop="53377"/>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54692"/>
          <exon e_start="54784" e_stop="54868"/>
          <exon e_start="54946" e_stop="55252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGGGTAGGGAATATGCAGGCCTTTTCTTGGTTCAATATTTTAAACATGAACTTGATTTTACTTATGTGATCAGCCTATAGCTAGAGAGTGAAATTGCAAAGCCATATATTTATTTTTACTTCTAATGCTTCTTGCGGTGAACCCTTCCTTTTATCACAGTTCAATGGTTCATGATTATTCTGTTGATTCTGTTTAGTCGGAACTTTTACTCGAAATTCTTTTATTGTACCTAAGCTTCAAATTATTAGTTCTTTTTTGTTCGGAAAAATTAGAAGTTGAGCTTTCCCTCATCCTTGATGAGTTCAATGGATTCTTGGAAGTTGATAAACTAGTAGTTTGACTCGGCTTTTTTTTTCTTGCAGGGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTATGT</genome_strand>
        <mrna_strand>CTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG.............................................................................GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31448" PGL_stop="36109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31448" e_stop="31502"/>
            <exon e_start="31657" e_stop="31805"/>
            <exon e_start="31888" e_stop="31977"/>
            <exon e_start="33895" e_stop="33960"/>
            <exon e_start="34139" e_stop="34204"/>
            <exon e_start="34473" e_stop="34558"/>
            <exon e_start="34653" e_stop="34698"/>
            <exon e_start="34805" e_stop="34859"/>
            <exon e_start="36086" e_stop="36109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.960" e_score="0.982"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="0.960"/>
          <exon-intron don_prob="0.902" acc_prob="0.872" e_score="0.967"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="31448" e_stop="31502" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.960">
            <gDNA_intron_boundary i_start="31503" i_stop="31656" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="31657" e_stop="31805" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="31888" e_stop="31977" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.872">
            <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33895" e_stop="33960" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34139" e_stop="34204" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34473" e_stop="34558" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="34653" e_stop="34698" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34805" e_stop="34859" e_length="55"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226"/>
          </intron>
          <exon e_serial="9" e_score="0.958">
            <gDNA_exon_boundary e_start="36086" e_stop="36109" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31448" stop="31502"/>
              <exon start="31657" stop="31805"/>
              <exon start="31888" stop="31977"/>
              <exon start="33895" stop="33960"/>
              <exon start="34139" stop="34204"/>
              <exon start="34473" stop="34558"/>
              <exon start="34653" stop="34698"/>
              <exon start="34805" stop="34859"/>
              <exon start="36086" stop="36109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g36960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAG : GAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTG : GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAG : GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG : AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG : GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG : TTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAG : GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG : AATCAGTTGATGATCTGATGAGTG</gDNA_template>
            <first_frame> R  A  E  R  S  E  R  A  N  *  G  F  D  N  R  N  Q  E   : G  R  I  V  L  C  E  R  F  V  Y  R  E  R  C  G  E  I  A  R  A  S  *  V  Y  I  L  R  F  P  L  S  A  N  Q  F  V  R  Q  V  F  V  T  M  S  E  K  K  L  V  :  V  L  G  I  P  W  D  V  D  T  E  G  L  R  E  Y  M  I  K  Y  G  D  L  E  D  C  I  V  M  K  :  E  R  A  T  G  R  S  R  G  F  G  Y  V  T  F  A  T  V  E  D  A  K  :  N  A  L  S  K  E  H  F  L  G  N  R  M  L  E  V  K  V  A  T  P  K  :  E  E  M  R  A  P  A  K  K  V  T  R  I  F  V  A  R  I  P  P  S  V  S  E  A  T  F  R  G :   Y  F  E  K  Y  G  E  I  T  D  L  Y  M  P  K  :  D  P  S  T  K  G  H  R  G  I  G  F  I  T  F  A  N  A   : E  S  V  D  D  L  M  S  </first_frame>
            <second_frame>  E  R  S  G  V  R  E  R  I  R  V  L  I  I  G  I  K  K  :  E  E  S  S  C  V  S  D  S  F  I  E  R  G  V  V  R  S  R  E  R  V  E  C  I  S  Y  D  F  H  S  P  L  I  N  L  S  D  K  F  S  L  P  C  R  R  R  S  L  W :   F  *  A  S  H  G  T  W  I  Q  K  V  *  G  N  I  *  S  N  M  E  I  *  R  I  V  L  *  *  R :   N  V  L  L  V  V  L  V  D  S  A  M  S  H  L  L  Q  L  R  M  L  R :   M  H  C  L  R  S  T  F  L  E  T  E  C  *  K  *  K  W  R  H  R  R :   R  R  *  G  L  L  Q  R  K  *  P  G  F  S  L  L  G  F  L  R  L  C  L  K  L  L  S  E   : V  I  L  R  S  T  V  K  *  Q  I  C  T  C  Q  R :   I  H  L  P  R  D  I  V  E  L  G  L  L  L  L  Q  M  L  :  N  Q  L  M  I  *  *  V </second_frame>
            <third_frame>   S  G  A  E  *  E  S  E  L  G  F  *  *  S  E  S  R  R :   K  N  R  L  V  *  A  I  R  L  *  R  E  V  W  *  D  R  E  S  E  L  S  V  Y  P  T  I  S  T  L  R  *  S  I  C  Q  T  S  F  R  Y  H  V  G  E  E  A  C   : G  F  R  H  P  M  G  R  G  Y  R  R  S  K  G  I  Y  D  Q  I  W  R  F  R  G  L  Y  C  D  E   : G  T  C  Y  W  S  F  S  W  I  R  L  C  H  I  C  Y  S  *  G  C  *   : E  C  I  V  *  G  A  L  S  W  K  Q  N  A  R  S  E  S  G  D  T  E   : G  G  D  E  G  S  C  K  E  S  D  Q  D  F  R  C  *  D  S  S  V  C  V  *  S  Y  F  Q  R  :  L  F  *  E  V  R  *  N  N  R  S  V  H  A  K   : G  S  I  Y  Q  G  T  S  W  N  W  V  Y  Y  F  C  K  C  * :   I  S  *  *  S  D  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31725" stop="31805"/>
                    <exon start="31888" stop="31977"/>
                    <exon start="33895" stop="33960"/>
                    <exon start="34139" stop="34204"/>
                    <exon start="34473" stop="34558"/>
                    <exon start="34653" stop="34698"/>
                    <exon start="34805" stop="34859"/>
                    <exon start="36086" stop="36108"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYILRFPLSANQFVRQVFVTMSEKKLVVLGIPWDVDTEGLREYMIKYGDLEDCIVMKERATGRSRGFGYVTFATVEDAKNALSKEHFLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVSEATFRGYFEKYGEITDLYMPKDPSTKGHRGIGFITFANAESVDDLMS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31658" e_stop="32133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31658" e_stop="32133" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31658" stop="32133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG167-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAA</gDNA_template>
            <first_frame> K  N  R  L  V  *  A  I  R  L  *  R  E  V  W  *  D  R  E  S  E  L  S  V  Y  P  T  I  S  T  L  R  *  S  I  C  Q  T  S  F  R  Y  H  V  G  E  E  A  C  G  K  F  W  F  L  S  *  F  S  R  H  V  C  L  *  L  Q  S  *  C  D  C  F  L  I  F  R  F  *  A  S  H  G  T  W  I  Q  K  V  *  G  N  I  *  S  N  M  E  I  *  R  I  V  L  *  *  R  S  V  Y  A  A  T  L  T  F  M  I  C  I  V  S  D  I  L  *  F  Q  R  L  S  *  P  N  C  V  Q  S  C  F  L  C  *  Q  C  C  F  F  F  C  L  L  I  V  L  V  S  E   </first_frame>
            <second_frame>  R  I  V  L  C  E  R  F  V  Y  R  E  R  C  G  E  I  A  R  A  S  *  V  Y  I  L  R  F  P  L  S  A  N  Q  F  V  R  Q  V  F  V  T  M  S  E  K  K  L  V  V  S  F  G  F  F  L  D  F  Q  G  M  F  V  F  D  C  N  L  N  V  I  A  S  *  F  L  G  F  R  H  P  M  G  R  G  Y  R  R  S  K  G  I  Y  D  Q  I  W  R  F  R  G  L  Y  C  D  E  G  Q  S  T  Q  L  P  *  L  L  *  Y  A  L  F  Q  I  Y  C  S  S  K  D  F  H  D  L  T  V  C  S  L  V  F  C  V  D  N  V  V  S  F  F  V  C  *  L  C  L  Y  Q  K  </second_frame>
            <third_frame>   E  S  S  C  V  S  D  S  F  I  E  R  G  V  V  R  S  R  E  R  V  E  C  I  S  Y  D  F  H  S  P  L  I  N  L  S  D  K  F  S  L  P  C  R  R  R  S  L  W  *  V  L  V  S  F  L  I  F  K  A  C  L  S  L  I  A  I  L  M  *  L  L  L  D  F  *  V  L  G  I  P  W  D  V  D  T  E  G  L  R  E  Y  M  I  K  Y  G  D  L  E  D  C  I  V  M  K  V  S  L  R  S  Y  L  D  F  Y  D  M  H  C  F  R  Y  T  V  V  P  K  T  F  M  T  *  L  C  A  V  L  F  F  V  L  T  M  L  F  L  F  L  F  V  N  C  A  C  I  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0104A12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33067" PGL_stop="32577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33067" e_stop="32577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33067" e_stop="32577" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33067" stop="32577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG167-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAAAAAAAACAGACCATAAAATAAGAACAGAGGAATCACTAACAGAGTAATAGGAAGCTGGGCACATTGACCTACTAAAAAAAAGAAGAGAAGAAGATGAAGAAGCAAAAAAAAGAGCAGCTGACTATGGCAGAAGAGAAGCTGCAAAGCAGAGGAGAAAGAAGAAGAAGACGTAACTAAAGGCTGAAGCTGAGGAGAAGAGAGTCACGTGTCAAAGAGAAAATTGAAGAAGAGAGTCGTGAGTCACGTTTGTTTTTAAAAACACTAATATTGCCATTTAATTATTAAGCACGTTTGTTTTTTTTCAAAAAGAATAAAATAAAAGGGCAACAATGGTGCCACCTCACCACTCATCATTTCTCGCCATTGATCGCCTTTGCAGGGTTGCGCCTTACGAGTAATAGGCGCAAAATCTCTGGCCAAAGGCAATCGCATTTGATAATCTGGTTTACTTTACCAGGAAAGAACCCAACGCAATCTTGAATC</gDNA_template>
            <first_frame> K  I  K  K  N  R  P  *  N  K  N  R  G  I  T  N  R  V  I  G  S  W  A  H  *  P  T  K  K  K  K  R  R  R  *  R  S  K  K  K  S  S  *  L  W  Q  K  R  S  C  K  A  E  E  K  E  E  E  D  V  T  K  G  *  S  *  G  E  E  S  H  V  S  K  R  K  L  K  K  R  V  V  S  H  V  C  F  *  K  H  *  Y  C  H  L  I  I  K  H  V  C  F  F  S  K  R  I  K  *  K  G  N  N  G  A  T  S  P  L  I  I  S  R  H  *  S  P  L  Q  G  C  A  L  R  V  I  G  A  K  S  L  A  K  G  N  R  I  *  *  S  G  L  L  Y  Q  E  R  T  Q  R  N  L  E   </first_frame>
            <second_frame>  K  L  K  K  T  D  H  K  I  R  T  E  E  S  L  T  E  *  *  E  A  G  H  I  D  L  L  K  K  R  R  E  E  D  E  E  A  K  K  R  A  A  D  Y  G  R  R  E  A  A  K  Q  R  R  K  K  K  K  T  *  L  K  A  E  A  E  E  K  R  V  T  C  Q  R  E  N  *  R  R  E  S  *  V  T  F  V  F  K  N  T  N  I  A  I  *  L  L  S  T  F  V  F  F  Q  K  E  *  N  K  R  A  T  M  V  P  P  H  H  S  S  F  L  A  I  D  R  L  C  R  V  A  P  Y  E  *  *  A  Q  N  L  W  P  K  A  I  A  F  D  N  L  V  Y  F  T  R  K  E  P  N  A  I  L  N  </second_frame>
            <third_frame>   N  *  K  K  Q  T  I  K  *  E  Q  R  N  H  *  Q  S  N  R  K  L  G  T  L  T  Y  *  K  K  E  E  K  K  M  K  K  Q  K  K  E  Q  L  T  M  A  E  E  K  L  Q  S  R  G  E  R  R  R  R  R  N  *  R  L  K  L  R  R  R  E  S  R  V  K  E  K  I  E  E  E  S  R  E  S  R  L  F  L  K  T  L  I  L  P  F  N  Y  *  A  R  L  F  F  F  K  K  N  K  I  K  G  Q  Q  W  C  H  L  T  T  H  H  F  S  P  L  I  A  F  A  G  L  R  L  T  S  N  R  R  K  I  S  G  Q  R  Q  S  H  L  I  I  W  F  T  L  P  G  K  N  P  T  Q  S  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32774" stop="32580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARLFFFKKNKIKGQQWCHLTTHHFSPLIAFAGLRLTSNRRKISGQRQSHLIIWFTLPGKNPTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40034" PGL_stop="39094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40034" e_stop="39895"/>
            <exon e_start="39595" e_stop="39514"/>
            <exon e_start="39425" e_stop="39094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="0.879"/>
          <exon-intron don_prob="0.844" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="40034" e_stop="39895" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39595" e_stop="39514" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.844" acc_prob="0.876">
            <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.898">
            <gDNA_exon_boundary e_start="39425" e_stop="39094" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40034" stop="39895"/>
              <exon start="39595" stop="39514"/>
              <exon start="39425" stop="39094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g36970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA : GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG : ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTCATTGTAGGTGGTTCTTGTCAAATCTAGAGCCTCAGTTGTTAATGGTAATCTAAAGGAACAGACAACTCGTTGCTGACTGCTTTATTCAGTA</gDNA_template>
            <first_frame> D  V  Q  V  D  K  G  D  P  I  L  G  L  S  R  K  S  R  V  R  K  P  K  K  Q  L  P  D  I  S  S  P  I  S  T  W  D  V  V  D  G  T  K  S  M  T  K :   S  Q  R  E  E  A  R  I  A  A  W  E  N  L  Q  K  A  K  A  E  A  E  I  Q  K  L  E  :  M  K  L  E  K  R  R  S  A  S  M  D  K  I  L  N  K  L  R  H  A  Q  V  K  A  Q  N  M  R  R  A  T  S  E  S  Q  P  R  R  D  S  H  R  I  I  P  F  R  E  Y  F  K  I  T  S  F  S  S  C  F  V  C  R  I  P  *  F  C  V  Q  A  *  G  F  L  K  *  N  S  S  H  C  R  W  F  L  S  N  L  E  P  Q  L  L  M  V  I  *  R  N  R  Q  L  V  A  D  C  F  I  Q   </first_frame>
            <second_frame>  T  C  R  L  T  K  E  T  Q  F  *  G  Y  L  G  K  A  G  *  G  N  P  R  N  N  Y  Q  T  *  V  R  L  S  Q  R  G  M  L  *  M  E  Q  R  V  *  Q   : S  R  K  E  R  K  P  G  S  L  L  G  R  T  C  R  R  P  K  Q  K  Q  K  S  K  S  L  R :   *  N  *  K  R  G  G  Q  H  P  W  I  R  F  *  T  S  L  D  T  L  R  *  R  P  K  I  *  D  V  Q  L  R  R  V  S  L  E  G  I  P  T  E  S  F  H  F  G  S  I  S  R  L  H  H  L  A  V  A  L  F  A  V  S  L  D  F  V  Y  R  H  E  A  F  *  S  K  I  Q  V  I  V  G  G  S  C  Q  I  *  S  L  S  C  *  W  *  S  K  G  T  D  N  S  L  L  T  A  L  F  S  </second_frame>
            <third_frame>   R  A  G  *  Q  R  R  P  N  F  R  A  I  S  E  K  P  G  E  E  T  Q  E  T  I  T  R  H  K  F  A  Y  L  N  V  G  C  C  R  W  N  K  E  Y  D  K  :  V  A  K  R  G  S  Q  D  R  C  L  G  E  L  A  E  G  Q  S  R  S  R  N  P  K  A  *   : D  E  T  R  K  E  E  V  S  I  H  G  *  D  S  E  Q  A  *  T  R  S  G  E  G  P  K  Y  E  T  C  N  F  G  E  S  A  *  K  G  F  P  Q  N  H  S  I  S  G  V  F  Q  D  Y  I  I  *  Q  L  L  C  L  P  Y  P  L  I  L  C  T  G  M  R  L  S  E  V  K  F  K  S  L  *  V  V  L  V  K  S  R  A  S  V  V  N  G  N  L  K  E  Q  T  T  R  C  *  L  L  Y  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40034" stop="39895"/>
                    <exon start="39595" stop="39514"/>
                    <exon start="39425" stop="39228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVQVDKGDPILGLSRKSRVRKPKKQLPDISSPISTWDVVDGTKSMTKSQREEARIAAWENLQKAKAEAEIQKLEMKLEKRRSASMDKILNKLRHAQVKAQNMRRATSESQPRRDSHRIIPFREYFKITSFSSCFVCRIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53101" PGL_stop="55252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53101" e_stop="53172"/>
            <exon e_start="53274" e_stop="53377"/>
            <exon e_start="53737" e_stop="53782"/>
            <exon e_start="53893" e_stop="53957"/>
            <exon e_start="54057" e_stop="54143"/>
            <exon e_start="54459" e_stop="54513"/>
            <exon e_start="54604" e_stop="54692"/>
            <exon e_start="54784" e_stop="54868"/>
            <exon e_start="54946" e_stop="55252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.085" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.547" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53101" e_stop="53172" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53274" e_stop="53377" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.085" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53737" e_stop="53782" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.983">
            <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53957" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54057" e_stop="54143" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.683">
            <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54459" e_stop="54513" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54604" e_stop="54692" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.547">
            <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54784" e_stop="54868" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.925">
            <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54946" e_stop="55252" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53101" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54868"/>
              <exon start="54946" stop="55252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g67030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA : TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG : GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA : GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA : GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG : GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG : GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA : TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG : GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTATGT</gDNA_template>
            <first_frame> L  A  R  M  A  A  I  M  A  S  T  Y  K  A  Y  L  G  V  G  L  G  P  L  S  :  F  L  T  Q  Y  R  I  P  H  P  G  R  V  G  G  R  V  F  I  D  L  G  M  P  L  M  L  S  W  V  L  G  G  N  G :   D  K  L  E  G  R  I  K  H  C  R  L  S  E  K  :  A  N  D  Q  L  R  K  W  F  E  D  D  D  A  L  E  R  A  T  D  A  E :   W  L  L  L  P  A  G  N  G  S  S  G  L  E  A  I  V  L  S  R  D  E  D  V  P  C  T  V  G :   S  I  S  H  T  N  I  P  G  K  S  I  V  L  P  L  P  Q  :  V  S  E  M  H  A  R  I  S  C  K  D  G  A  F  F  V  T  D  L  R  S  E  H  G  T  W  V  T  D :   N  E  G  R  R  Y  R  T  S  P  N  F  P  T  R  F  H  P  S  D  V  I  E  F  G  S  D  K  :  A  A  F  R  V  K  A  M  K  F  P  L  K  T  S  E  R  K  E  E  R  E  A  V  E  A  A  *  S  L  T  *  Y  K  Q  E  I  V  Q  H  F  I  A  N  I  R  R  *  A  I  *  A  *  L  I  L  Y  T  V  G  F  R  K  D  P  *  T  R  H  H  E  R  K  Y  R  D  S  P  K  E  I  W  R  M  S  W  T  L  S  L  I  L  P  L  L  K  I  Y  Y  F  S  M  </first_frame>
            <second_frame>  W  L  E  W  L  Q  S  W  H  L  L  T  R  L  I  L  A  S  D  L  V  H  Y  H :   F  *  R  S  I  E  Y  H  I  L  E  E  L  V  E  E  F  L  L  T  W  E  C  L  *  C  *  V  G  F  *  E  A  M   : G  T  S  L  K  A  E  *  N  I  A  G  Y  L  R  K :   Q  M  T  N  *  E  N  G  L  K  M  M  M  L  *  S  V  L  L  M  Q   : S  G  Y  F  Y  L  R  G  M  A  L  L  V  *  K  L  L  F  *  A  E  M  R  M  S  L  A  L  S   : G  P  S  H  I  Q  I  F  L  E  N  Q  *  F  Y  L  C  H  R :   Y  L  K  C  T  P  G  Y  H  A  K  T  E  H  F  L  *  L  I  Y  E  V  N  M  V  P  G  L  Q   : I  M  K  A  E  D  I  G  R  L  Q  T  S  L  H  V  F  I  H  Q  M  L  S  N  L  V  L  I  R :   Q  H  F  V  L  K  Q  *  N  F  H  *  K  L  L  K  G  R  K  S  A  K  Q  W  R  Q  R  K  A  *  P  D  I  N  R  K  L  Y  S  I  L  *  Q  T  S  G  V  E  Q  F  K  H  S  *  F  C  I  L  *  V  L  E  K  I  H  K  Q  D  T  M  K  E  N  T  E  I  L  L  K  K  S  G  E  C  H  G  H  C  L  L  F  Y  H  C  *  K  Y  I  T  S  L  C </second_frame>
            <third_frame>   G  *  N  G  C  N  H  G  I  Y  L  Q  G  L  S  W  R  R  T  W  S  T  I   : I  F  D  A  V  *  N  T  T  S  W  K  S  W  W  K  S  F  Y  *  L  G  N  A  S  D  V  K  L  G  S  R  R  Q  W  :  G  Q  A  *  R  Q  N  K  T  L  Q  A  I  *  E   : S  K  *  P  I  E  K  M  V  *  R  *  *  C  F  R  A  C  Y  *  C  R  :  V  V  T  F  T  C  G  E  W  L  F  W  F  R  S  Y  C  F  K  Q  R  *  G  C  P  L  H  C  R  :  V  H  L  T  Y  K  Y  S  W  K  I  N  S  F  T  F  A  T   : G  I  *  N  A  R  P  D  I  M  Q  R  R  S  I  F  C  N  *  F  T  K  *  T  W  Y  L  G  Y  R  :  *  *  R  Q  K  I  S  D  V  S  K  L  P  Y  T  F  S  S  I  R  C  Y  R  I  W  F  *  *   : G  S  I  S  C  *  S  N  E  I  S  T  K  N  F  *  K  E  G  R  A  R  S  S  G  G  S  V  K  L  D  L  I  *  T  G  N  C  T  A  F  Y  S  K  H  Q  A  L  S  N  L  S  I  V  N  F  V  Y  C  R  F  *  K  R  S  I  N  K  T  P  *  K  K  I  Q  R  F  S  *  R  N  L  E  N  V  M  D  I  V  S  Y  S  T  I  A  K  N  I  L  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53101" stop="53172"/>
                    <exon start="53274" stop="53377"/>
                    <exon start="53737" stop="53782"/>
                    <exon start="53893" stop="53957"/>
                    <exon start="54057" stop="54143"/>
                    <exon start="54459" stop="54513"/>
                    <exon start="54604" stop="54692"/>
                    <exon start="54784" stop="54868"/>
                    <exon start="54946" stop="55029"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LARMAAIMASTYKAYLGVGLGPLSFLTQYRIPHPGRVGGRVFIDLGMPLMLSWVLGGNGDKLEGRIKHCRLSEKANDQLRKWFEDDDALERATDAEWLLLPAGNGSSGLEAIVLSRDEDVPCTVGSISHTNIPGKSIVLPLPQVSEMHARISCKDGAFFVTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSDKAAFRVKAMKFPLKTSERKEEREAVEAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 9896 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1979 bytes was the average size of a spliced alignment
$ 9720 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2430 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:45:40
-->
