<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:00:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730674" ref_strand="+" ref_description="SGN-E730674 [LA24DC12]">
      <seq>ccatttgaggcagcagacaaacatacttgttaataaattatcatatattgaaaaaactaataagaaaaaattaatggcaactgattcaaacagcagtgatcgcaaggaagaagaatacgcagagtgtgcttggaagagtcttcaacacgaagaactgacggaacttgaacatgctgtaggtcatgtcaataacaatgaaaaagatgaagaaaaactgagacaactgatagaaaaaatcataaaacacttccaagagcactctgagaagcgtctccatctagcccgaaaagacgtgtccccattcttcgcccccgcctcgtgctcttcctcggagagttcggtcctatggatcgctggctgtagaccttcttctttcattcgactcattatgccctcaccgaatttgaacctgacgccaacgaaactgatccgtgtcttgaggggatcgtaagcaggaagctccgcgaactaagtgggaaacagttgagcatggttaacgatttgcaaagcaagacgattgcagaagagaggaggatttcgaataaatttgctagtttacaagaggacatagcggatcaacggcttgtggggaagatgaaaaaagagggacatggttgtgagaaagcggatgaagctttggatgaacatagtagacacatggcggatgttattgaagaaggtgatcgactgaggatgaaaacgttgaaggcaatagtgaacctacttgaaccggttcaagcggtggagtacttaacagcagctaaaaaaatgaggttttgtgtgncacaatgggggagagaagagggatcagcagcataaacagtagtaatcaatctacttctttttaattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="842" stop="2290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1138" g_stop="1990" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E730674" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1138" e_stop="1990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACA-CTGAAGCAGCAGACAAACATACTTGTTAATAAATTATCATATATTGAAAAAACTAATAAGAAAAAATTAATGGCAACTGATTCAAACAGCAGTGATCGCAAGGAAGAAGAATACGCAGAGTGTGCTTGGAAGAGTCTTCAACACGAAGAACTGACGGAACTTGAACATGCTGTAGGTCATGTCAATAACAATGAAAAAGATGAAGAAAAACTGAGACAACTGATAGAAAAAATCATAAAACACTTCCAAGAGCACTCTGAGAAGCGTCTCCATCTAGCCCGAAAAGACGTGTCCCCATTCTTCGCCCCCGCCTCGTGCTCTTCCTCGGAGAGTTCGGTCCTATGGATCGCTGGCTGTAGACCTTCTTCTTTCATTCGACTCATTATGCCCTCACCGAATTTGAACCTGACGCCAACGAAACTGATCCGTGTCTTGAGGGGATCGTAAGCAGGAAGCTCCGCGAACTAAGTGGGAAACAGTTGAGCATGGTTAACGATTTGCAAAGCAAGACGATTGCAGAAGAGAGGAGGATTTCGAATAAATTTGCTAGTTTACAAGAGGACATAGCGGATCAACGGCTTGTGGGGAAGATGAAAAAAGAGGGACATGGTTGTGAGAAAGCGGATGAAGCTTTGGATGAACATAGTAGACACATGGCGGATGTTATTGAAGAAGGTGATCGACTGAGGATGAAAACGTTGAAGGCAATAGTGAACCTACTTGAACCGGTTCAAGCGGTGGAGTACTTAACAGCAGCTAAGAAAATGAGGTTTTGTGTGCAACAAT-GGGGAGAGAAGAGGGATCAGCAGCATAAACAGTAGTAATCAATCTACTTCTTTTTAATTATTTT</genome_strand>
        <mrna_strand>CCATTTGAGGCAGCAGACAAACATACTTGTTAATAAATTATCATATATTGAAAAAACTAATAAGAAAAAATTAATGGCAACTGATTCAAACAGCAGTGATCGCAAGGAAGAAGAATACGCAGAGTGTGCTTGGAAGAGTCTTCAACACGAAGAACTGACGGAACTTGAACATGCTGTAGGTCATGTCAATAACAATGAAAAAGATGAAGAAAAACTGAGACAACTGATAGAAAAAATCATAAAACACTTCCAAGAGCACTCTGAGAAGCGTCTCCATCTAGCCCGAAAAGACGTGTCCCCATTCTTCGCCCCCGCCTCGTGCTCTTCCTCGGAGAGTTCGGTCCTATGGATCGCTGGCTGTAGACCTTCTTCTTTCATTCGACTCATTATGCCCTCACCGAATTTGAACCTGACGCCAACGAAACTGATCCGTGTCTTGAGGGGATCGTAAGCAGGAAGCTCCGCGAACTAAGTGGGAAACAGTTGAGCATGGTTAACGATTTGCAAAGCAAGACGATTGCAGAAGAGAGGAGGATTTCGAATAAATTTGCTAGTTTACAAGAGGACATAGCGGATCAACGGCTTGTGGGGAAGATGAAAAAAGAGGGACATGGTTGTGAGAAAGCGGATGAAGCTTTGGATGAACATAGTAGACACATGGCGGATGTTATTGAAGAAGGTGATCGACTGAGGATGAAAACGTTGAAGGCAATAGTGAACCTACTTGAACCGGTTCAAGCGGTGGAGTACTTAACAGCAGCTAAAAAAATGAGGTTTTGTGTGNCACAATGGGGGAGAGAAGAGGGATCAGCAGCATAAACAGTAGTAATCAATCTACTTCTTTTTAATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728209" ref_strand="+" ref_description="SGN-E728209 [LA17AC05]">
      <seq>catggttttatattgagggtgcactaactttaaccagaaaaattcacccatacatgtttttttttccttcccatttattatcataaaaaaaaataattaaaaagaagtagattgattactactgtttatgctgctgatccctcttctctccccattgttgcacacaaaacctcattttcttagctgctgttaagtactccaccgcttgaaccggttcaagtaggttcactattgccttcaacgttttcatcctcagtcgatcaccttcttcaataacatccgccatgtgtctactatgttcatccaaagcttcatccgctttctcacaaccatgtccctcttttttcatcttccccacaagccgttgatccgctatgtcctcttgtaaactagcaaatttattcgaaatcctcctctcttctgcaatcgtcttgctttgcaaatcgttaaccatgctcaactgtttcccacttagttcgcggagcttcctgcttacgatcccctcaagacacggatcagtttcgttggcgtcaggttcaaattcggtgagggcataatgagtcgaatgaaagaagaaggtctacagccagcgatccataggaccgaactctccgaggaagagcacgaggcgggggcgaagaatggggacacgtcttttcgggctagatggagacgcttctcagagtgctcttggaagtgttttatgattttttctatcagttgtctcagtttttcttcatctttttcattgttattgacatgacctacagcatgttcaagttccgtcagttcttcgtgttgaagactcttccaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="2380" stop="961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2080" g_stop="1255" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E728209" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2080" e_stop="1255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTTTATATTGAGGGTGCACTAACTTTAACCAGAAAAATTCACCCATACATGTTTTTTTTTTCCTTCCCATTTATTATCATAAAAAAAAATAATTAAAAAGAAGTAGATTGATTACTACTGTTTATGCTGCTGATCCCTCTTCTCTCCCCATTGTTGCACACAAAACCTCATTTTCTTAGCTGCTGTTAAGTACTCCACCGCTTGAACCGGTTCAAGTAGGTTCACTATTGCCTTCAACGTTTTCATCCTCAGTCGATCACCTTCTTCAATAACATCCGCCATGTGTCTACTATGTTCATCCAAAGCTTCATCCGCTTTCTCACAACCATGTCCCTCTTTTTTCATCTTCCCCACAAGCCGTTGATCCGCTATGTCCTCTTGTAAACTAGCAAATTTATTCGAAATCCTCCTCTCTTCTGCAATCGTCTTGCTTTGCAAATCGTTAACCATGCTCAACTGTTTCCCACTTAGTTCGCGGAGCTTCCTGCTTACGATCCCCTCAAGACACGGATCAGTTTCGTTGGCGTCAGGTTCAAATTCGGTGAGGGCATAATGAGTCGAATGAAAGAAGAAGGTCTACAGCCAGCGATCCATAGGACCGAACTCTCCGAGGAAGAGCACGAGGCGGGGGCGAAGAATGGGGACACGTCTTTTCGGGCTAGATGGAGACGCTTCTCAGAGTGCTCTTGGAAGTGTTTTATGATTTTTTCTATCAGTTGTCTCAGTTTTTCTTCATCTTTTTCATTGTTATTGACATGACCTACAGCATGTTCAAGTTCCGTCAGTTCTTCGTGTTGAAGACTCTTCCAAGCACACTCTGC</genome_strand>
        <mrna_strand>CATGGTTTTATATTGAGGGTGCACTAACTTTAACCAGAAAAATTCACCCATACATG-TTTTTTTTTCCTTCCCATTTATTATCATAAAAAAAAATAATTAAAAAGAAGTAGATTGATTACTACTGTTTATGCTGCTGATCCCTCTTCTCTCCCCATTGTTGCACACAAAACCTCATTTTCTTAGCTGCTGTTAAGTACTCCACCGCTTGAACCGGTTCAAGTAGGTTCACTATTGCCTTCAACGTTTTCATCCTCAGTCGATCACCTTCTTCAATAACATCCGCCATGTGTCTACTATGTTCATCCAAAGCTTCATCCGCTTTCTCACAACCATGTCCCTCTTTTTTCATCTTCCCCACAAGCCGTTGATCCGCTATGTCCTCTTGTAAACTAGCAAATTTATTCGAAATCCTCCTCTCTTCTGCAATCGTCTTGCTTTGCAAATCGTTAACCATGCTCAACTGTTTCCCACTTAGTTCGCGGAGCTTCCTGCTTACGATCCCCTCAAGACACGGATCAGTTTCGTTGGCGTCAGGTTCAAATTCGGTGAGGGCATAATGAGTCGAATGAAAGAAGAAGGTCTACAGCCAGCGATCCATAGGACCGAACTCTCCGAGGAAGAGCACGAGGCGGGGGCGAAGAATGGGGACACGTCTTTTCGGGCTAGATGGAGACGCTTCTCAGAGTGCTCTTGGAAGTGTTTTATGATTTTTTCTATCAGTTGTCTCAGTTTTTCTTCATCTTTTTCATTGTTATTGACATGACCTACAGCATGTTCAAGTTCCGTCAGTTCTTCGTGTTGAAGACTCTTCCAAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360787" ref_strand="+" ref_description="SGN-E360787 [cLPP-7-K18]">
      <seq>ccttttaatttttctcctccacatcaatattccaaatctttcgacaaaacaaaaagggctccattcaataacaactacgcctctgttccaaacagattacgattacaaaggcaatgaatcctcaacaatattaaaaagaaaaaatttgtctcaattgtattgccaatttcttcttcaggatgacttcgaagaacgataagaaaggcaatattttgatgcaaaggtatgagattgggaaattgcttgggcagggtacatttgcaaaagtataccatgctagaaatctcaaaacagggcaaagtgttgctattaaggtgattgacaaagagaagattatgaaggttggtttaattgatcaaacgaaacgtgaaatctccgtcatgaggctaatcaaacacccaaatattgttcagctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="3319" stop="4327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3619" g_stop="4027" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="418" r_length="397" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E360787" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3619" e_stop="4027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATATTCCAAATCTTTCAACAAAACAAAAAGGGCTCCTTAATCTCCATGCAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAAAATTAAAAAGAAAAAATAATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATATTGTCCAGCTCTA</genome_strand>
        <mrna_strand>CATCAATATTCCAAATCTTTCGACAAAACAAAAAGGGCTCC---AT-T-CA----ATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAAAGGCAATGAATCCTCAACAATATTAAAAAG--AAAA-AATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGTTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATATTGTTCAGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361375" ref_strand="+" ref_description="SGN-E361375 [cLPP-6-E12]">
      <seq>acaaataaagcaaggtttttgcccttcttttcccttttaatttttctcctccacatcaatattccaaatctttcgacaaaacaaaaagggctccattcaataacaactacgcctctgttccaaacagattacgattacaatggcaatgaatcctcaacaatattaaaaagaaaaaatttgtctcaattgtattgccaatttcttcttcaggatgacttcgaagaacgataagaaaggcaatattttgatgcaaaggtatgagattgggaaattgcttgggcagggtacatttgcaaaagtataccatgctagaaatctcaaaacagggcaaagtgttgctattaaggtgattgacaaagagaagattatgaaggttggtttaattgatcaaacgaaacgtgaaatctccgtcatgaggctaatcaaacacccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="3275" stop="4314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3619" g_stop="4014" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="437" r_length="384" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E361375" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3619" e_stop="4014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATATTCCAAATCTTTCAACAAAACAAAAAGGGCTCCTTAATCTCCATGCAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAAAATTAAAAAGAAAAAATAATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATA</genome_strand>
        <mrna_strand>CATCAATATTCCAAATCTTTCGACAAAACAAAAAGGGCTCC---A--T---T-CAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAATATTAAAAAG--AAAA-AATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGTTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364071" ref_strand="+" ref_description="SGN-E364071 [cLPP-16-H10]">
      <seq>aaggtttttgcccttcttttcccttttaatttttctcctccacatcaatattccaaatctttcgacaaaacaaaaagggctccattcaataacaactacgcctctgttccaaacagattacgattacaatggcaatgaatcctcaacaatattaaaaagaaaaaatttgtctcaattgtattgccaatttcttcttcaggatgacttcgaagaacgataagaaaggcaatattttgatgcaaaggtatgagattgggaaattgcttgggcagggtacatttgcaaaagtataccatgctagaaatctcaaaacagggcaaagtgttgctattaaggtgattgacaaagagaagattatgaaggttggtttaattgatcaaacgaaacgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="3286" stop="4281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3619" g_stop="3981" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="393" r_length="351" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E364071" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3619" e_stop="3981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATATTCCAAATCTTTCAACAAAACAAAAAGGGCTCCTTAATCTCCATGCAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAAAATTAAAAAGAAAAAATAATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAA</genome_strand>
        <mrna_strand>CATCAATATTCCAAATCTTTCGACAAAACAAAAAGGGCTCC---A--T---T-CAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAATATTAAAAAGAAAAAAT---TTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGTTTAATTGATCAAACGAAACGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288261" ref_strand="+" ref_description="SGN-E288261 [cLES-16-O17]">
      <seq>agaaaggcaatattttgatgcaaaggtatgagattgggaaattgcttgggcagggtacatttgcaaaagtataccatgctagaaatctcaaaacagggcaaagtgttgctattaaggtgattgacaaagagaagattatgaaggttgggttaattgatcaaacgaaacgtgaaatctccgtcatgaggctaatcaaacacccaaatattgtccagctctatgaggttatggcgagcaaaacaaaaatatattttgctatggaatatgttagaagtggtgaacttttcaataaggttgctaaaggcagacttaaagaagatgctgcaagaaaatactttcaacagttaatcgctgcagtcgatttctgtcataggcgtgatgtctaccaccgtgatctcaagcctgaaaatctcctgcttgacgaaggtggcaatctgaaagtctcggattttggtctgagtgcattgtttgattcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="3508" stop="4662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3808" g_stop="4233" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4234" i_stop="4308" i_length="75">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4309" g_stop="4362" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="480" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E288261" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3808" e_stop="4233"/>
          <exon e_start="4309" e_stop="4362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATATTGTCCAGCTCTATGAGGTTATGGCGAGCAAAACAAAAATATATTTTGCTATGGAATATGTTAGAGGTGGTGAACTTTTCAATAAGGTTGCTAAAGGCAGACTTAAAGAAGATGCTGCAAGAAAATACTTTCAACAGTTAATCGCTGCAGTCGATTTCTGTCATAGCCGTGATGTCTACCACCGTGATCTCAAGCCTGAAAATCTCCTCCTTGACGAAGGTAGTGTTCAAATTTTATACAAGAGTCGCGAGAGGAGTGCATTTTTATTTACTTAATCATGTTTTCGTGCAACAGGTGGCAATCTGAAAGTCTCGGATTTTGGTCTGAGTGCATTGTTTGATTCGAAAA</genome_strand>
        <mrna_strand>AGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATATTGTCCAGCTCTATGAGGTTATGGCGAGCAAAACAAAAATATATTTTGCTATGGAATATGTTAGAAGTGGTGAACTTTTCAATAAGGTTGCTAAAGGCAGACTTAAAGAAGATGCTGCAAGAAAATACTTTCAACAGTTAATCGCTGCAGTCGATTTCTGTCATAGGCGTGATGTCTACCACCGTGATCTCAAGCCTGAAAATCTCCTGCTTGACGAAG...........................................................................GTGGCAATCTGAAAGTCTCGGATTTTGGTCTGAGTGCATTGTTTGATTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265576" ref_strand="+" ref_description="SGN-E265576 [cLEI-14-H14]">
      <seq>ggcccaagatcataaataagttggaggaaattgctaaggttgtgagctttgcagtaaggaagaaggattgtaaagtgagtatggaggggtctaaggaaggtgcaaaggggccgttgacagttgcagctgagatatttgagttgacaccatcgttgacagttgttgaactgaagaacaaaggaggagatagctaggagtatgaggagttttacaacagggaattgaagccaggattacagaatttagcacatgaagtgggataccctgttaatgcatcgaatttgccatcagatgctgaataaagagagagaaggggaaagggtaactgcggacatcttagggaccacttggaggctacttgcactcaaacggagatctcctgaataccaaaaagaatgaacacatgccaagctagactgatggagcttcatgctagtgaaccttgacgtgagttgatgttcgcaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="14845" stop="11432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14546" g_stop="14226" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14225" i_stop="11880" i_length="2346">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11879" g_stop="11732" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="469" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E265576" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14546" e_stop="14226"/>
          <exon e_start="11879" e_stop="11732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCAAGATCATAAATAAGTTGGAGGAAATTGCTAAAGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGAGAGTTGTTGAAGTGAAGAAGAAAGGAGGAGATAGCTTGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTTGGATACCCTGTTAATTCATCGTATTTGCCATCAGATACTGAATAAAGAGAGAGAAGGGGAAAGGGTAAGCTCTTTTCTCCTCCCTTTTTATATCGTAGGTGCATTTGAATAGGTAGCACTTTGTGTTCTTTGCACTTTTGCATCTGTTATTAGCTCATGTTCAAAGCTTGTCAGATCTTGTAATTTCGGTTCTTGTTATGGGATGTTATATAAAATTATCTAAAAAATGAACACATCAGTGTCTCGAAATCGGCTCGTTTCTCAATTTTCTTTTATTTTCTGTTTCTAGTAATATTCTAACTCTTAACCAAAAAATTGTGGCACGCTATTCCTATGAGCAAATGCTTGGCTGTAGTAGTCTGCAGCTTGTGGAAGTGCAATGTTATAGATTGAGCTTCTCAACTTCTCTGTAGGAACCACTGCATTACAAATTGAGCTTCTCAATCTTGTAAGGCCAGTTAATAAGGAGCAATTCTGCTAATAACATCTGCACAATAATTTTTTATTAACTACTCATGGAGTTGAGCCACGGTAAGTTTTGTGATGCTTGCATTAGGATAAGGCATAAGCTGCTTGCATTGTGGCCCTTCCTCAAACTTTATGTGAATGCAGGATGCTTTGTGCACTGGGCCGTTCTCAAAGGTTGTCCGATCCTTCCCCCCAGCACATATGGTCTTCACAATATAATGAGAAAATAAAGAGAGTTTAAATTTTTCTTTTCTTGTTTGGTTGTCGTGTCTGGATTGGTCTGATAGAAATGTGAATCATTCATGAACTGTAATCTGCTTTTTCATTGCCAAGTTGATCAAAGCCAGTAGAACCTTGATGATTGGAACTTGGATCAAGGCTCTTGTAGATTTTCTTGAGGATGTTACCTGCCAAGCTTAATCTGACAAACCTTACTGAATGATTTATGCTTGTCATTAACTGTTCTCTTATTTTGCCTGCTAGTTTTATTGGTCAATCTGTATTTTCACTTTGAGTTTGTTATTTGCATAAGTAGATCTTCTTCAATGAAAAAGGTAAAAGAAGAACCTTTTTTTCTATCGTTACAGAAGTACAAACTAGCTTGGCAATTAAATGGCTGTCTTTAACTTTGACGGGTTTAGGTACGTCTGAGGACAGGGGGCAACTAAGGGGAAAACATTTAAGTGAGGTTTGTTCAGATAGGTTTTATTTGTGTGAATGTTTTTGGTCATGGTAAAGACGATTGTTGTAGATTTATGAAAACCAGCTCTCTGATTACCCTTGGTCGGTGATGAAATTGGTATATGGTGCTTAAATATATTCCTCGATCTTTTTCATACATTGCAGCCTAGATTTTTTTACTTAGACATGAAGCGAAAGTTTTGCTTCTTTTAATATTTCACGTCGCCTTTTGCTTTTCCCCAATAGATGGGAAATGCTGAATGATGTCGGAGCAACATAGCTGAAAGCGAATAAACTCATAGGAGTATGCTTTCAATTTGACTAGCATGTTCCAACTTTTTGAGGCACCTTCTGGGTGATATGGTAATAAAAATTCATTTTACCTTAAAAAGAAAAAAAAAGTGGTTTTTGATGATCTCTCATTAGTGATAGTTCTACTGTTTCACCGATAGGGGATTGATTATATTTTGATGGGAATATGATGCAAGATCCTGGATCTAAGGGCATATCTTTGTCACTTCTTATGTTCGCTTCTTGCATATGCTGCATTCTGTTATGCTGTGTCATAGTGGTCTTCTGTTCCTTATTATTGTTAAAAATGAGCACCCTGATGGCTGTTTCAATGTTAGTGAAGGGCTTGTCCTTATTCGTTCTTTCCTTTTTTATATTCTTTTCTTGATACTACCATTTGAACATTGTTGACCAACCTTTCTCATATAAACTAATATTTTCTTCTTATTATGGCCAGTTCATTCATCACTATGATGCTGGTGTGATTAATTAAATATTTAGTATCACTATGATGCTGGTGTGATTAATTAAAAATTTAGTAGTGGTTGGTACTGAAAGGAGTAATTGCTCAATTTGTATTCTGCAACTGATTGCCTGAATTTGGTCACTTATGGATTCTTTATATAATCAGTAATTGACCTATTACCAATCAACTGATGACTCATCTATTTATGTACTACTTTGAATAAACACTTCCGCTTTGACGGTCTAATGTTTATGTTCTGCCTTAGTTAGCACACATTGGTTCCTAATTGCTAGACCTCTCTTTTATGTTTTTGTTTGATCTCTCTTTATGTTCTTTCGCGCCTTCACTTGTTGCTAGATCTGTGTGATTGCATTGGCCAACAGGTTATGATTTGGTATCGTATAATGGGATGCCAAATAAAACTAGTCTGGCATTCCCACTCTTCATTAATTATTCAGAAAATGCAGTTCAACAATACTTTTCTGTTTGTTCCCTGTCTGTTAGGTAACTGCGGACATCTTAGGGACCAGTTGGAGGCTTCTTGCACTCAAACGGAGATCTCCTGAATACCAAAAAGAAGGAACACATGCCAAGCTAGACTGATGGAGCTTCATGCTAGTGAACCTTGACATGAGTTGATGTTCGTAATCAA</genome_strand>
        <mrna_strand>GGCCCAAGATCATAAATAAGTTGGAGGAAATTGCTAAGGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGACAGTTGTTGAACTGAAGAACAAAGGAGGAGATAGCTAGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTGGGATACCCTGTTAATGCATCGAATTTGCCATCAGATGCTGAATAAAGAGAGAGAAGGGGAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCGGACATCTTAGGGACCACTTGGAGGCTACTTGCACTCAAACGGAGATCTCCTGAATACCAAAAAGAATGAACACATGCCAAGCTAGACTGATGGAGCTTCATGCTAGTGAACCTTGACGTGAGTTGATGTTCGCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325383" ref_strand="+" ref_description="SGN-E325383 [cTOC-1-K7]">
      <seq>aagatcataaataagttggaggaaattgctaaagttgtgagctttgcagtaaggaagaaggattgtaaagtgagtatggaggggtctaaggaaggtgcaaaggggccgttgacagttgcagctgagatatttgagttgacaccatcgttgagagttgttgaagtgaagaagaaaggaggagatagcttggagtatgaggagttttacaacagggaattgaagccaggattacagaatttagcacatgaagttggataccctgttaattcatcgtatttgccatcagatactgaataaagagagagaaggggaaagggtaagctcttttctcctccctttttatatcgtaggtgcatttgaataggtagcactttgtgttctttgcacttttgcatctgttattagctcatgttcaaagcttgtcagatcttgtaatttcggttcttgttatgggatgttatataaaattatctaaaaaatgaacacatcagtgtctcgaaatcggctcgtttctcaattttcttttattttctgtttctagtaatattctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="14841" stop="13689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14541" g_stop="13989" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E325383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14541" e_stop="13989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCATAAATAAGTTGGAGGAAATTGCTAAAGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGAGAGTTGTTGAAGTGAAGAAGAAAGGAGGAGATAGCTTGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTTGGATACCCTGTTAATTCATCGTATTTGCCATCAGATACTGAATAAAGAGAGAGAAGGGGAAAGGGTAAGCTCTTTTCTCCTCCCTTTTTATATCGTAGGTGCATTTGAATAGGTAGCACTTTGTGTTCTTTGCACTTTTGCATCTGTTATTAGCTCATGTTCAAAGCTTGTCAGATCTTGTAATTTCGGTTCTTGTTATGGGATGTTATATAAAATTATCTAAAAAATGAACACATCAGTGTCTCGAAATCGGCTCGTTTCTCAATTTTCTTTTATTTTCTGTTTCTAGTAATATTCTAAC</genome_strand>
        <mrna_strand>AAGATCATAAATAAGTTGGAGGAAATTGCTAAAGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGAGAGTTGTTGAAGTGAAGAAGAAAGGAGGAGATAGCTTGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTTGGATACCCTGTTAATTCATCGTATTTGCCATCAGATACTGAATAAAGAGAGAGAAGGGGAAAGGGTAAGCTCTTTTCTCCTCCCTTTTTATATCGTAGGTGCATTTGAATAGGTAGCACTTTGTGTTCTTTGCACTTTTGCATCTGTTATTAGCTCATGTTCAAAGCTTGTCAGATCTTGTAATTTCGGTTCTTGTTATGGGATGTTATATAAAATTATCTAAAAAATGAACACATCAGTGTCTCGAAATCGGCTCGTTTCTCAATTTTCTTTTATTTTCTGTTTCTAGTAATATTCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453945" ref_strand="+" ref_description="SGN-E453945 [cSTS-21-N3]">
      <seq>ggcaatttctcctaaaaaaaaacattatttaggctgactgtcaactaattctattgatcttttggccttccctttcccccttttttcgcaaatcttcaaacgaccctttcgatattttaccccttttttgcaaattttgaattacccatctgatattttggctttttgatcgcaatttggaagcacccttttgataaagtttggttcttttaggaaaaaaattcaactatacatattttttgttaaaagtttgcagaatccatggccggcatcgctaccgccggcgacaccagcaccagtaccagcagcaacctagcgccgacgaggagtttgagcaagaaggaaaatcaggggcttctgttgggcaggtatgaaattgggaaattactagggcatggtacttttgctaaggtgtaccatgctagaaatgtgaagacgaatgagagcgtagcgattaaggtgattgataaagaaaagatcttgaaagtgggtcttattgatcacataaaacgtgagatctcaattctcaagagagttaggcatccaaatatagttgaattgtacgaagttatggctaccaaagccaaaatcttctttgtcatggagtatgtcaaaggcggtgagctcttcaataaggttgccaaaggcaggcttaaggaagaanngtgctcgaaatatttccagcagttaatctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="16182" stop="14944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15941" g_stop="15244" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E453945" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15941" e_stop="15244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTTCTCCTCAAAATAACCATTATTTAGGATGACTCTCAACTAATCTTATTGATCTTTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACCGCTTTTCTTTTTTGCAAAATTTTGAATTACTCATCTGGTATTTTGGCTTTTTGATCACAATTTGGAAACACCCATTTGATAAAGTTTGGTTCTTTTAGG-AAATAATTCAACTATAC--------GGTTAAAAGTTTGCTGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAGATTGGGAAATTACTAGGACATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAGAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTGAGATCTCAATTCTCAAGAGAGTTAGGCATCCAAATATAGTTGAATTATACGAAGTTATGGCTACCAAAGCCAAAATCTTCTTTGTCATGGAGTATGTCAAAGGCGGTGAGCTCTTCAATAAGGTTGCCAAAGGCAGGCTTAAGGAAGAAGT-TGCTCGGAAATATTTCCAGCAGTTAATTTCTGCT</genome_strand>
        <mrna_strand>GGCAATTTCTCCTAAAAAAAAACATTATTTAGGCTGACTGTCAACTAATTCTATTGATC--TTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACC-C----CTTTTTTGC-AAATTTTGAATTACCCATCTGATATTTTGGCTTTTTGATCGCAATTTGGAAGCACCCTTTTGATAAAGTTTGGTTCTTTTAGGAAAAAAATTCAACTATACATATTTTTTGTTAAAAGTTTGCAGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAAATTGGGAAATTACTAGGGCATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAAAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTGAGATCTCAATTCTCAAGAGAGTTAGGCATCCAAATATAGTTGAATTGTACGAAGTTATGGCTACCAAAGCCAAAATCTTCTTTGTCATGGAGTATGTCAAAGGCGGTGAGCTCTTCAATAAGGTTGCCAAAGGCAGGCTTAAGGAAGAANNGTGCTC-GAAATATTTCCAGCAGTTAATCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486683" ref_strand="+" ref_description="SGN-E486683 [cSTE-22-N18]">
      <seq>cttgaaacctaaaaatagctcaataacatcagcatctccaactacacgacagctcaccatttcaatggcaatttctcctcaaaaaaaccattatttaggctgactgtcaactaatcctattgatctttttggccttccctttcccccttttttcgcaaatcttcaaacgaccctttcgatattttaccccttttttgcaaattttgaattacccatctgatattttggctttttgatcgcaatttggaagcacccttttgataaagtttggttcttttaggaaaaaaattcaactatacatattttttgttaaaagtttgcagaatccatggccggcatcgctaccgccggcgacaccagcaccagtaccagcagcaacctagcgccgacgaggagtttgagcaagaaggaaaatcaggggcttctgttgggcaggtatgaaattgggaaattactagggcatggtacttttgctaaggtgtaccatgctagaaatgtgaagacgaatgagagcgtagcgattaaggtgattgataaagaaaagatcttgaaagtgggtcttattgatcacataaaacgtgagatctcaattctcaagagagtaaggcatccaaatatagttgaattgtacgaagttatggctaccaaagccaaaatcttctttgtcatggagtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="16309" stop="15031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16009" g_stop="15331" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E486683" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16009" e_stop="15331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCTAAAAATAGCTCAATAACACATCAACATCTCCAACTACACGACAGCCCACCATTTCGATGGCAATTTCTCCTCAAAATAACCATTATTTAGGATGACTCTCAACTAATCTTATTGATCTTTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACCGCTTTTCTTTTTTGCAAAATTTTGAATTACTCATCTGGTATTTTGGCTTTTTGATCACAATTTGGAAACACCCATTTGATAAAGTTTGGTTCTTTTAGG-AAATAATTCAACTATAC--------GGTTAAAAGTTTGCTGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAGATTGGGAAATTACTAGGACATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAGAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTGAGATCTCAATTCTCAAGAGAGTTAGGCATCCAAATATAGTTGAATTATACGAAGTTATGGCTACCAAAGCCAAAATCTTCTTTGTCATGGAGTATGTC</genome_strand>
        <mrna_strand>CTTGAAACCTAAAAATAGCTCAAT-A-ACATCAGCATCTCCAACTACACGACAGCTCACCATTTCAATGGCAATTTCTCCTCAAAAAAACCATTATTTAGGCTGACTGTCAACTAATCCTATTGATC-TTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACC-C----CTTTTTTGC-AAATTTTGAATTACCCATCTGATATTTTGGCTTTTTGATCGCAATTTGGAAGCACCCTTTTGATAAAGTTTGGTTCTTTTAGGAAAAAAATTCAACTATACATATTTTTTGTTAAAAGTTTGCAGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAAATTGGGAAATTACTAGGGCATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAAAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTGAGATCTCAATTCTCAAGAGAGTAAGGCATCCAAATATAGTTGAATTGTACGAAGTTATGGCTACCAAAGCCAAAATCTTCTTTGTCATGGAGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427380" ref_strand="+" ref_description="SGN-E427380 [STM-48-I8]">
      <seq>cttgaaacctaaaaatagctcaataacatcagcatctccaactacacgacagctcaccatttcaatggcaatttctcctcaaaaaaaccattatttaggctgactgtcaactaatcctattgatctttttggccttccctttcccccttttttcgcaaatcttcaaacgaccctttcgatattttaccccttttttgcaaattttgaattacccatctgatattttggctttttgatcgcaatttggaagcacccttttgataaagtttggttcttttaggaaaaaaattcaactatacatattttttgttaaaagtttgcagaatccatggccggcatcgctaccgccggcgacaccagcaccagtaccagcagcaacctagcgccgacgaggagtttgagcaagaaggaaaatcaggggcttctgttgggcaggtatgaaattgggaaattactanggcatggtacttttgctaaggtgtaccatgctagaaatgtgaagacgaatgagagcgtagcgattaaggtgattgataaagaaaagatcttgaaagtgggtcttattgatcacataaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="16309" stop="15129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16009" g_stop="15429" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E427380" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16009" e_stop="15429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCTAAAAATAGCTCAATAACACATCAACATCTCCAACTACACGACAGCCCACCATTTCGATGGCAATTTCTCCTCAAAATAACCATTATTTAGGATGACTCTCAACTAATCTTATTGATCTTTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACCGCTTTTCTTTTTTGCAAAATTTTGAATTACTCATCTGGTATTTTGGCTTTTTGATCACAATTTGGAAACACCCATTTGATAAAGTTTGGTTCTTTTAGG-AAATAATTCAACTATAC--------GGTTAAAAGTTTGCTGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAGATTGGGAAATTACTAGGACATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAGAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTG</genome_strand>
        <mrna_strand>CTTGAAACCTAAAAATAGCTCAAT-A-ACATCAGCATCTCCAACTACACGACAGCTCACCATTTCAATGGCAATTTCTCCTCAAAAAAACCATTATTTAGGCTGACTGTCAACTAATCCTATTGATC-TTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACC-C----CTTTTTTGC-AAATTTTGAATTACCCATCTGATATTTTGGCTTTTTGATCGCAATTTGGAAGCACCCTTTTGATAAAGTTTGGTTCTTTTAGGAAAAAAATTCAACTATACATATTTTTTGTTAAAAGTTTGCAGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAAATTGGGAAATTACTANGGCATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAAAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313826" ref_strand="+" ref_description="SGN-E313826 [cTOA-17-C22]">
      <seq>ttttctctctccatatataaataaaaccaattgtattggtcttatttacctccacttgaattcatctactcttatcaactctatatggcatttacatcaactactatcaactgaaagaaacaatctcaattcccacagaacaaaaaatgaaaatcctcttcacactctttatcttcctttctcttttcacattctcaaaatcagaatccccttgcagaaacaacacagatgttgattcatctcttgttttcaaggctttcagttctgtttatggcttcaacatctcttggttcagctcaaactgttcctctccaataactgaaattaacttatcttcaagaaacctcactggcatagtctcatggaagtacttgaaaaatttgtcccatcttcattctatagatctatcaaataattccttaaagggttctgttcatcctctgttttggaccatttcatctttggttcaagtcaatatgtcaaagaataagcttggtggagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="28510" stop="29614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28810" g_stop="29314" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E313826" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28810" e_stop="29314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCCATATATAAATAAAACCAATTGTATTGGTCTTATTTACCTCCACTTGAATTCATCTACTCTTATCAACTCTATATGGCATTTACATCAACTACTATCAACTGAAAGAAACAATCTCAATTCCCACAGAACAAAAAATGAAAATCCTCTTCACACTCTTTATCTTCCTTTCTCTTTTCACATTCTCAAAATCAGAATCCCCTTGCAGAAACAACACAGATGTTGATTCATCTCTTGTTTTCAAGGCTTTCAGTTCTGTTTATGGCTTCAACATCTCTTGGTTCAGCTCAAACTGTTCCTCTCCAATAACTGAAATTAACTTATCTTCAAGAAACCTCACTGGCATAGTCTCATGGAAGTACTTGAAAAATTTGTCCCATCTTCATTCTATAGATCTATCAAATAATTCCTTAAAGGGTTCTGTTCATCCTCTGTTTTGGTCCATTTCATCTTTGGTTCAAGTCAATTTGTCAAAGAATAAGCTTGGTGGAGCTGT</genome_strand>
        <mrna_strand>TTTTCTCTCTCCATATATAAATAAAACCAATTGTATTGGTCTTATTTACCTCCACTTGAATTCATCTACTCTTATCAACTCTATATGGCATTTACATCAACTACTATCAACTGAAAGAAACAATCTCAATTCCCACAGAACAAAAAATGAAAATCCTCTTCACACTCTTTATCTTCCTTTCTCTTTTCACATTCTCAAAATCAGAATCCCCTTGCAGAAACAACACAGATGTTGATTCATCTCTTGTTTTCAAGGCTTTCAGTTCTGTTTATGGCTTCAACATCTCTTGGTTCAGCTCAAACTGTTCCTCTCCAATAACTGAAATTAACTTATCTTCAAGAAACCTCACTGGCATAGTCTCATGGAAGTACTTGAAAAATTTGTCCCATCTTCATTCTATAGATCTATCAAATAATTCCTTAAAGGGTTCTGTTCATCCTCTGTTTTGGACCATTTCATCTTTGGTTCAAGTCAATATGTCAAAGAATAAGCTTGGTGGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304552" ref_strand="+" ref_description="SGN-E304552 [cLEX-11-B23]">
      <seq>tcaaactgttcctctccaataactgaaattaacttatcttcaagaaacctcactggcatagtctcatggaagtacttgaaaaatttgtcccatcttcattctatagatctatcaaataattccttaaagggttctgttcatcctctgttttggtccatttcatctttggttcaagtcaatttgtcaaagaataagcttggtggagctgttgctgtagcaagatcatcatcatctattcaaagacttgatctttctttcaacaggtttactaacttaggctctgttttttatggttttcctaatctcacttctcttgacctttcacataatgatatcaagtttttgcctttttggtttaccaacctaactaagcttgaaaatttgagcatttctagctgtaacatttatggcaatccaaaacccctttcacatatcaagtcactgaagcatttagatgtttctgtcaaccatatggatggtaaattacctaatgattttcctcctctgtctagtctcaatttcttgaatatttcattcaataacttcactggggaaatacctaaagaccagtttgctaaatttgggaattcttctttctttcatgctgggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="28806" stop="30017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29106" g_stop="29717" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E304552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29106" e_stop="29717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTGTTCCTCTCCAATAACTGAAATTAACTTATCTTCAAGAAACCTCACTGGCATAGTCTCATGGAAGTACTTGAAAAATTTGTCCCATCTTCATTCTATAGATCTATCAAATAATTCCTTAAAGGGTTCTGTTCATCCTCTGTTTTGGTCCATTTCATCTTTGGTTCAAGTCAATTTGTCAAAGAATAAGCTTGGTGGAGCTGTTGCTGTAGCAAGATCATCATCATCTATTCAAAGACTTGATCTTTCTTTCAACAGGTTTACTAACTTAGGCTCTGTTTTTTATGGTTTTCCTAATCTCACTTCTCTTGACCTTTCACATAATGATATCAAGTTTTTGCCTTTTTGGTTTACCAACCTAACTAAGCTTGAAAATTTGAGCATTTCTAGCTGTAACATTTATGGCAATCCAAAACCCCTTTCACATATCAAGTCACTGAAGCATTTAGATGTTTCTGTCAACCATATGGATGGTAAATTACCTAATGATTTTCCTCCTCTGTCTAGTCTCAATTTCTTGAATATTTCATTCAATAACTTCACTGGGGAAATACCTAAAGACCAGTTTGCTAAATTTGGGAATTCTTCTTTCTTTCATGCTGGGCAC</genome_strand>
        <mrna_strand>TCAAACTGTTCCTCTCCAATAACTGAAATTAACTTATCTTCAAGAAACCTCACTGGCATAGTCTCATGGAAGTACTTGAAAAATTTGTCCCATCTTCATTCTATAGATCTATCAAATAATTCCTTAAAGGGTTCTGTTCATCCTCTGTTTTGGTCCATTTCATCTTTGGTTCAAGTCAATTTGTCAAAGAATAAGCTTGGTGGAGCTGTTGCTGTAGCAAGATCATCATCATCTATTCAAAGACTTGATCTTTCTTTCAACAGGTTTACTAACTTAGGCTCTGTTTTTTATGGTTTTCCTAATCTCACTTCTCTTGACCTTTCACATAATGATATCAAGTTTTTGCCTTTTTGGTTTACCAACCTAACTAAGCTTGAAAATTTGAGCATTTCTAGCTGTAACATTTATGGCAATCCAAAACCCCTTTCACATATCAAGTCACTGAAGCATTTAGATGTTTCTGTCAACCATATGGATGGTAAATTACCTAATGATTTTCCTCCTCTGTCTAGTCTCAATTTCTTGAATATTTCATTCAATAACTTCACTGGGGAAATACCTAAAGACCAGTTTGCTAAATTTGGGAATTCTTCTTTCTTTCATGCTGGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617489" ref_strand="+" ref_description="SGN-E617489 [66340]">
      <seq>cacagttacacattaaaaatcataactttactaccccaacacacacaaaaatgttgcctttgagacacaaacctatcaaaccaaacacacacaagaaaaagcccaaaccaagaaagaaagttttaaccatagctatttcctctgcttcagcatttctaatcttggtcatggggttagtcattttgtgtctatacaaaaggagaaaacaattggctaggaagaacaaatggctaatttcaaagccaatacaaataccatttagaatggacaaatcagggccattttcatttgaaacagagtcagggaattcatgggttgttgacataaaagaaccaagttcagcagctgtagttatgtttgagaagccattgatgaacctaacattcaaagacctcattgcagccacaactcactttggaaaagagtcattgttagctgaaggaaggtgtgggcccgtttacagagccgtacttccaggtgacctccacgtggcaatcaaggtcttggaacatgctagggaactagcccatgatgatgctattaccttgtttgaacaactctccaggcttaagcatcctaatctgttgcctatttctggttactgcatcgcagggaaagagaagctagtcttgtacgaattcatgtccaatggtgacctccaccgatggctacacgagcttccaactgcntacaccaacgtggaagactggacaaccgacacgtgggagttacaaaacggttcccaaaattacgtcaacccgggaaaaatggaatggcacacgcgccaccgtattgcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="29458" stop="31555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29758" g_stop="30369" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30370" i_stop="31071" i_length="702">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="31255" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="799" r_length="187" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E617489" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29758" e_stop="30369"/>
          <exon e_start="31072" e_stop="31255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTACGCATTAAAAATCATAACTTTACAACCCCAACACACAAGAAAATGTTGCCTTTGAGACACAAACCTGTCAAACCAAACACACACAAGAAAGAGCCCAAATCAAGAAAGAAAGTTTTAACCGTAGCTCTTTCCTCTGCTTCAGCATTTCTAATCTTGGTCATGGGGTTAGTCATATTGTGTCTATACAAAAGGAAAAAACAAATGGCTAGGAAGAACAAATGGCTAATATCAAAGCCAATACAGATACCGTTTAGAATGGACAAATCAGGGCCATTTTCATTTGAAACAGAGTCAGGCAATTCATGGGTTGCTGACATAAAAGAACCAAGTTCAGCAGGTGTAGTTATGTTTGAGAAGCCATTGATGAACCTAACATTCAAAGACCTGATAGCAGCCACATCTCACTTCGGAAAAGAGTCATTGTTAGCTGAAGGAAGGTGTGGGCCCGTTTACAGAGCCGTACTTCCAGGCGACCTCCACGTGGCAATCAAGGTCTTGGAACATGCTAGGGAACTAAGCCATGATGATGCTATTGCCTTGTTTGAACAACTCTCCAGGATTAAGCATCCTAATCTGTTGCCTATTTCTGGTTACTGCATTGCAGGTACAAATCTTCTTTCACTTATTACTGTTCCGTACGATAATTTAATTTATGTGATATAATTCGAATCTTAAGAGTCGGAAAAAATATCTAGAGGTGAGCATATTGAATGCATTCACGTGGGAGGATGGGATTAGAAAATAGGACAGAGAGTAGTAAATGAGACAGAAATCTTTGTAACCATAGAAACGTAGGCAGTAGTTATGATTACATACAACAAGATGAAGCAGTAAATAGGAATGCGTGACTTATTTGGATGTTAGTACTATGACTACATCATTCAATTTATACGTGCTTTTAATGCTCTTTGTAAATTGTGTCCATTTTTTAACCTACAAAGTCAAACTTTCAAATCTTATGCCAGATTGGGATTTGAAAAACTGCAGTATGTTTGGTTCATGTATATATGTTGCACAAATAGTATTGATTTATGGAGATGAAAAAGATAAGAGGATTTTTTTAAAAAAATATAATGGTTGAGAAGAATGTCATTTTCAATTATTGAAAATGCTTAAAGTTAGAAAATTATTTCATGACATGCACTGATTGATGAATTGTAGTATCAAAAGTCCTTGTCAAATAATTTTGGAGGACTCTTCTGTCTGGAAAAATTGCTCCATTTGATAAAAAATAAAATACAATTATTTTTTCTATCAGTCAATTCATATTAAAAAAGATAATTTAATACTCTTCCCTTTGATGCAGGGAAAGAGAAGCTAGTCTTATACGAATTCATGTCCAATGGTGACCTCCACCGATGGCTACACGAGCTTCCAACTGCTACCACCAACGTGGAAGACTGGACAACCGACACGTGGGAGTTACAAAACGGGTCCC-AAATTACATC-ACCCGGG-AAAATGGAATGGCACACGCGCCACCGTATTGCGGT</genome_strand>
        <mrna_strand>CACAGTTACACATTAAAAATCATAACTTTACTACCCCAACACACACAAAAATGTTGCCTTTGAGACACAAACCTATCAAACCAAACACACACAAGAAAAAGCCCAAACCAAGAAAGAAAGTTTTAACCATAGCTATTTCCTCTGCTTCAGCATTTCTAATCTTGGTCATGGGGTTAGTCATTTTGTGTCTATACAAAAGGAGAAAACAATTGGCTAGGAAGAACAAATGGCTAATTTCAAAGCCAATACAAATACCATTTAGAATGGACAAATCAGGGCCATTTTCATTTGAAACAGAGTCAGGGAATTCATGGGTTGTTGACATAAAAGAACCAAGTTCAGCAGCTGTAGTTATGTTTGAGAAGCCATTGATGAACCTAACATTCAAAGACCTCATTGCAGCCACAACTCACTTTGGAAAAGAGTCATTGTTAGCTGAAGGAAGGTGTGGGCCCGTTTACAGAGCCGTACTTCCAGGTGACCTCCACGTGGCAATCAAGGTCTTGGAACATGCTAGGGAACTAGCCCATGATGATGCTATTACCTTGTTTGAACAACTCTCCAGGCTTAAGCATCCTAATCTGTTGCCTATTTCTGGTTACTGCATCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAGAAGCTAGTCTTGTACGAATTCATGTCCAATGGTGACCTCCACCGATGGCTACACGAGCTTCCAACTGCNTACACCAACGTGGAAGACTGGACAACCGACACGTGGGAGTTACAAAACGGTTCCCAAAATTACGTCAACCCGGGAAAAATGGAATGGCACACGCGCCACCGTATTGCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587525" ref_strand="+" ref_description="SGN-E587525 [41059]">
      <seq>cctatcaaaccaaacacacacaagaaaaagcccaaaccaagaaagaaagttttaaccatagctatttcctctgcttcagcatttctaatcttggtcatggggttagtcattttgtgtctatacaaaaggagaaaacaattggctaggaagaacaaatggctaatttcaaagccaatacaaataccatttagaatggacaaatcagggccattttcatttgaaacagagtcagggaattcatgggttgttgacataaaagaaccaagttcagcagctgtagttatgtttgagaagccattgatgaacctaacattcaaagacctcattgcagccacaactcactttggaaaagagtcattgttagctgaaggaaggtgtgggcccgtttacagagccgtacttccaggtgacctccacgtggcaatcaaggtcttggaacatgctagggaactagcccatgatgatgctattaccttgtttgaacaactctccaggcttaagcatcctaatctgttgcctatttctggttactgcatcgcagggaaagagaagctagtcttgtacgaattcatgtccaatggtgacctccaccgatggctacacgagcttccaactgctaccaccaacgtggaagactggacaaccgacacgtgggagttacaaaacggttcccaaattacgtcacccgggaaaatggaatggcacacgcgccaccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="29529" stop="31548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29829" g_stop="30369" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30370" i_stop="31071" i_length="702">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="31248" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="718" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E587525" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29829" e_stop="30369"/>
          <exon e_start="31072" e_stop="31248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTCAAACCAAACACACACAAGAAAGAGCCCAAATCAAGAAAGAAAGTTTTAACCGTAGCTCTTTCCTCTGCTTCAGCATTTCTAATCTTGGTCATGGGGTTAGTCATATTGTGTCTATACAAAAGGAAAAAACAAATGGCTAGGAAGAACAAATGGCTAATATCAAAGCCAATACAGATACCGTTTAGAATGGACAAATCAGGGCCATTTTCATTTGAAACAGAGTCAGGCAATTCATGGGTTGCTGACATAAAAGAACCAAGTTCAGCAGGTGTAGTTATGTTTGAGAAGCCATTGATGAACCTAACATTCAAAGACCTGATAGCAGCCACATCTCACTTCGGAAAAGAGTCATTGTTAGCTGAAGGAAGGTGTGGGCCCGTTTACAGAGCCGTACTTCCAGGCGACCTCCACGTGGCAATCAAGGTCTTGGAACATGCTAGGGAACTAAGCCATGATGATGCTATTGCCTTGTTTGAACAACTCTCCAGGATTAAGCATCCTAATCTGTTGCCTATTTCTGGTTACTGCATTGCAGGTACAAATCTTCTTTCACTTATTACTGTTCCGTACGATAATTTAATTTATGTGATATAATTCGAATCTTAAGAGTCGGAAAAAATATCTAGAGGTGAGCATATTGAATGCATTCACGTGGGAGGATGGGATTAGAAAATAGGACAGAGAGTAGTAAATGAGACAGAAATCTTTGTAACCATAGAAACGTAGGCAGTAGTTATGATTACATACAACAAGATGAAGCAGTAAATAGGAATGCGTGACTTATTTGGATGTTAGTACTATGACTACATCATTCAATTTATACGTGCTTTTAATGCTCTTTGTAAATTGTGTCCATTTTTTAACCTACAAAGTCAAACTTTCAAATCTTATGCCAGATTGGGATTTGAAAAACTGCAGTATGTTTGGTTCATGTATATATGTTGCACAAATAGTATTGATTTATGGAGATGAAAAAGATAAGAGGATTTTTTTAAAAAAATATAATGGTTGAGAAGAATGTCATTTTCAATTATTGAAAATGCTTAAAGTTAGAAAATTATTTCATGACATGCACTGATTGATGAATTGTAGTATCAAAAGTCCTTGTCAAATAATTTTGGAGGACTCTTCTGTCTGGAAAAATTGCTCCATTTGATAAAAAATAAAATACAATTATTTTTTCTATCAGTCAATTCATATTAAAAAAGATAATTTAATACTCTTCCCTTTGATGCAGGGAAAGAGAAGCTAGTCTTATACGAATTCATGTCCAATGGTGACCTCCACCGATGGCTACACGAGCTTCCAACTGCTACCACCAACGTGGAAGACTGGACAACCGACACGTGGGAGTTACAAAACGGGTCCCAAATTACATCACCCGGGAAAATGGAATGGCACACGCGCCACCGTA</genome_strand>
        <mrna_strand>CCTATCAAACCAAACACACACAAGAAAAAGCCCAAACCAAGAAAGAAAGTTTTAACCATAGCTATTTCCTCTGCTTCAGCATTTCTAATCTTGGTCATGGGGTTAGTCATTTTGTGTCTATACAAAAGGAGAAAACAATTGGCTAGGAAGAACAAATGGCTAATTTCAAAGCCAATACAAATACCATTTAGAATGGACAAATCAGGGCCATTTTCATTTGAAACAGAGTCAGGGAATTCATGGGTTGTTGACATAAAAGAACCAAGTTCAGCAGCTGTAGTTATGTTTGAGAAGCCATTGATGAACCTAACATTCAAAGACCTCATTGCAGCCACAACTCACTTTGGAAAAGAGTCATTGTTAGCTGAAGGAAGGTGTGGGCCCGTTTACAGAGCCGTACTTCCAGGTGACCTCCACGTGGCAATCAAGGTCTTGGAACATGCTAGGGAACTAGCCCATGATGATGCTATTACCTTGTTTGAACAACTCTCCAGGCTTAAGCATCCTAATCTGTTGCCTATTTCTGGTTACTGCATCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAGAAGCTAGTCTTGTACGAATTCATGTCCAATGGTGACCTCCACCGATGGCTACACGAGCTTCCAACTGCTACCACCAACGTGGAAGACTGGACAACCGACACGTGGGAGTTACAAAACGGTTCCCAAATTACGTCACCCGGGAAAATGGAATGGCACACGCGCCACCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549644" ref_strand="+" ref_description="SGN-E549644 [TUS-6-D2]">
      <seq>tggaaatggagccgacgcgctcgactcgagactaaaactcggcggtgactcagtgagtgagatggtggagtgcctccgagttgggtacttgtgtacggcggaggccccaaataaacggcctagaatgcaacaagttttgggtttgctaaaagacatacagccgcactaccaactcggaaaaacgcaaaatttatgatcttcaggtaaaccactctcactcccagcgcgtgattcacacgacgaggaagattgattggcagcattgcattattgtactcccatgtgtttgatttgaccattgaaaagtcaaaagtacaatgcatctattccacatcatcaatggcattcagtcacgtgcaggtcacgtgatgaagtgtagtgagaggaacatgttttgcttgtttgtctcttttttactctctctttctttttcttttcttttttcgtaatttgtatagtatttaattagaaaaagaaaattgaacaaaaatcatgggtaaatctttttttatatataatcttttatttatttatttagattttagggagtgtaatttgaagtggagcagagaaggcagagaatcccactaattgcttgtctctactaagggacattagaatcattcaactcctttagttttcttttcttttaccttctttatttttttctctttaatttaactnttattgtttgtttgttctttttcttttctatttattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="31211" stop="32535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31511" g_stop="32235" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E549644" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31511" e_stop="32235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGGAGCCGACGCGCTCGACTCGAGACTAAAACTCGGCGGTGACTCAGTGAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGAATGCAACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGTCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGTAATTTGTATAGTATTTAATTAGAAAAAGAAAATTGAACAAAAATCATGGGTAAATCTTTTTTTATATATAATCTTTTATTTATTTATTTAGATTTTAGGGAGTGTAATTTGAAGTGGAGCAGAGAAGGCAGAGAATCCCACTAATTGCTTGTCTCTACTAAGGGACATTAGAATCATTCAACTCCTTTAGTTTTCTTTTCTTTTACCTTCTTTATTTTTTTCTCTTTAATTTAAACTTTTATTGTTTGTTTGTTCTTTTTCTTTTCTATTTATTGCTT</genome_strand>
        <mrna_strand>TGGAAATGGAGCCGACGCGCTCGACTCGAGACTAAAACTCGGCGGTGACTCAGTGAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGAATGCAACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGTCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGTAATTTGTATAGTATTTAATTAGAAAAAGAAAATTGAACAAAAATCATGGGTAAATCTTTTTTTATATATAATCTTTTATTTATTTATTTAGATTTTAGGGAGTGTAATTTGAAGTGGAGCAGAGAAGGCAGAGAATCCCACTAATTGCTTGTCTCTACTAAGGGACATTAGAATCATTCAACTCCTTTAGTTTTCTTTTCTTTTACCTTCTTTATTTTTTTCTCTTTAATTT-AACTNTTATTGTTTGTTTGTTCTTTTTCTTTTCTATTTATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239752" ref_strand="+" ref_description="SGN-E239752 [cLED-33-E16]">
      <seq>ggaaatggagccgacgcgctcgactcgagactaaaactcggcggtgactcagtgagtgagatggtggagtgcctccgagttgggtacttgtgtacggcggaggccccaaataaacggcctagaatgcaacaagttttgggtttgctaaaagacatacagccgcactaccaactcggaaaaacgcaaaatttatgatcttcaggtaaaccactctcactcccagcgcgtgattcacacgacgaggaagattgattggcagcattgcattattgtactcccatgtgtttgatttgaccattgaaaagtcaaaagtacaatgcatctattccacatcatcaatggcattcagtcacgtgcaggtcacgtgatgaagtgtagtgagaggaacatgttttgcttgtttggctcttttttactctctctttctttttcttttcttttttcggaatttgtatagtatttaattagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="31212" stop="32284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31512" g_stop="31984" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E239752" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31512" e_stop="31984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAGCCGACGCGCTCGACTCGAGACTAAAACTCGGCGGTGACTCAGTGAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGAATGCAACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGTCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGTAATTTGTATAGTATTTAATTAGAAAAA</genome_strand>
        <mrna_strand>GGAAATGGAGCCGACGCGCTCGACTCGAGACTAAAACTCGGCGGTGACTCAGTGAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGAATGCAACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGGCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGGAATTTGTATAGTATTTAATTAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356104" ref_strand="-" ref_description="SGN-E356104 [cLHT-7-K5]">
      <seq>aacaagttttgggtttgctaaaagacatacagccccagtaccaacttggaaaaacgcaaaatttatgatcttcaggtaacccactctcacccccagcgcgtgatttacacgacgaggaagattgattggcagcattgcattattgtactcccatgtgtttgatttgaccattgaaaagtcaaaagtacaatgcatctattccacatcatcaatggcattcagtcacgtgcaggtcacgtgatgaagtgtagcgagaggaacatgttttgcttgtttgtcttttttttattctctctttcttttctttttctcgtaatttgtatagtatttaattagaaaaagaaaattgaacaaaaattatgggtaaaaaaaaaaaaaaaaaactcgagactagtctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="31339" stop="32249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31639" g_stop="32010" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="384"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E356104" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356104" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31639" e_stop="32010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGTCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGTAATTTGTATAGTATTTAATTAGAAAAAGAAAATTGAACAAAAATCATGGGTAA</genome_strand>
        <mrna_strand>AACAAGTTTTGGGTTTGCTAAAAGACATACAGCCCCAGTACCAACTTGGAAAAACGCAAAATTTATGATCTTCAGGTAACCCACTCTCACCCCCAGCGCGTGATTTACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGCGAGAGGAACATGTTTTGCTTGTTTGTCTTTTTTTTATTCTCTCTTTC-TTTTC---T-TTTTCTCGTAATTTGTATAGTATTTAATTAGAAAAAGAAAATTGAACAAAAATTATGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544587" ref_strand="+" ref_description="SGN-E544587 [TUS-66-P23]">
      <seq>cggacactttctcaacccaattaccccaacagctcacgacggaacccttgaatctccaattttttcaattatcgaaacccctaatatttcaaaacttcgaaatcccaatttcgtagactgaaaacctaattgaatcgtaatggcatcgcagaagaaggaatcggagggaatcgctctactgtctatctatggcgacgacgaagatgaagacatggaagaagttgaagaagaacaaagggaagaagatgcacaagaacacagacctgaatcacataacttaggctttacaatgggcacagagttccaagatgatagcaaaaaagttttcgggtctgattcaggtcggagttcgactccttcacctctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctagcaaggtttcgaattttggtgttggttctaccactacgacgccattagcgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagtagacgagcaaggctaactattgttgattatgctcatgatgaagttaccatgtcaccggagcctgaggaaggagaagtaatggctagtggaagagtcatgtatggagcggaacttcagactgctagtgttgaatttatggaaaaggcttcaccagctcttcaagttagaacacctagtgctcaaacccctcctcagtcagctgaggcaactgaacaattggatgatactatggactttgctgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36496" stop="40171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36796" g_stop="37381" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37594" g_stop="37654" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="647" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39753" g_stop="39871" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="766" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E544587" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36796" e_stop="37381"/>
          <exon e_start="37594" e_stop="37654"/>
          <exon e_start="39753" e_stop="39871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAGGTACTTATTTTTATGCTCTATTTTGAGTTGAATTTTGCTTTTTATTTTTTATTTTTTATGCTTGTTCAAAACGGACTGAAAAGAAGATGAGAAAATTAAGGATTTTGGCTTTTAGATTATGCTAGAAAACTCATGTGGGATCCTATTAGAGAGTTATTCATGTAATGAACCTATGATTTAGGAGTTGATGTGAGTTTTTCCTCTCTCTGTAGGAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTGGTATGTATGCTTTATGTTTTCTCTATTCAGCTCCGCCTCGTATGCTGTTTTGTTGTTATGCCCCTTGCTTGACTGCTTAGTTAAATTGACCTAGGAGTTATGCCTGGTATGGTTACATTGTTCAGGATAGGCAACTATTGTAATTCAACCATTTTTTTTCTCATTCCGCCATCTTAATTTTGTATGACTGTCTTTCCTAGGGAGTGGCACCTCTCCATTTACAGAAGCTGTTTCTTTTATAAATGTGGTGCCCACGACAGCTTTTGTGCATCTCGACTAATTTCCCAGGATAGGCGAAAAAGCGAAATGGTGTGATAGGCCCATGGGTTGGATCGTAAATTGGACCCTTCTATTTACGACCTTGTCAAACTGAACACTTAAAACTCAATGAATCACAATATTTTAAACACCTCTGACCATTGACCAAACTTATGTCAGCAATAAATAGCTGAGTTGGAAATGTACAATGTACACGCGGATTAAGGGCGTGAATTGATACTTTTCATTATAAATACACATATAATTAGGAATTTTCTGTTTTTAAAGAAGGAAAATAAATTTCTCCTTCCTCTTCTTATTTTCTGTAGAGAAAAAAAAATCAGGTAGCGCCGCCCTAGGTTTCTCATCCTCCAAACATACAAATTGAAAAGAAGAAGAAAATTTTTCCCATTGAAAGCTCAAATCAGAAATGGGTTATATGAAATCATATAGAAAGAAGTGTACAAATCCCTTTTTGGTTTGAATGGTTCTTTGGACTGATTTATTTGTCTTCAAATAAAAAACGGGTTATATGATTTGAGCATTTAATTCGAAGATTTCTTCTCTCTAAAATTGAAAGCTCAAGTTACAAGACTGTACGGGCTGAATCGAGAAACCTGATAACTCGGCTTCAGGGTGGGACGACTGAGCTGTTTGACTCGTTGCTTGGACTGTTATAGGAAGATGACAAGAATGTATTGATTGCAATAGCTCAAGGAATTATCCCGTTGCTGGTCCGTTTACTCGATTCGAGTTCTTCGCCAGAGATCAAGTAGAAAATTGTGAGTGCTTTTTTTGTCACAAAAAGGGGTAGGATGGGAGGTGGATTTGGATTTTGAGGGGGTGGGGGGCTAGAGGTGACCAGAAGAGAAAGGGGATGGGGAAAGGAGGTCCAATGAGAGAAATATAGCATTTTTAACATATTATTTATTTTCTTATGTTTAATTTACGTGGATTGCGCGTGTATTTGGTTGTATTTTCACCAACCATGATCAAGTGAGAAAAGGGTTTACAATATTGTGTTTCATTGAATTTAAGTGTTCAGTTGACAGGATCGTAAGCAGAAGGTTCCAATTTACAATCCGACCCAAGTATAAGGGCCTATCAAACCATTTCACCCCCTCCCCCCCCCTCCCCAGGATACCTGCAACCTCCCACTAACAATAGCTATCAGGTAACTCTGCCACTAAGGCTAGAATAGATGGGAAGAAATCACCTAGTGTTTTTTGTCTCTGCTGGTTCAATGCTCTCAACTCACTTCATTGATCACTAGGCCACACCATTGGGTGCCCATTTACTGAAACTTTTTATAATCTCAATTTCCATTTTTCCCCTTGTTCATGCACTCCGATAAAAATTGATATGACTTGTTGTGGACTCCACTTGATATTGAAAGAAAGCAAGTCTGGCAAGATACTTTTGGTATGCATATTTAGTTTGTGTCAAAATTTCTTATTTTTCTTTAATTCCCGTATCCAATCAAATAATTCAGAATGAAATGGGACAAGGGAGTGTTTTATGAGCTTATCCAAAGAACATTGGTGCAACTTTTGGGTTGAAATAAATCATTTTTAGCTGGTTAGCTTGTTATTTGTTAAGAAGTTGACATTTACCGTTTTTGATCCATATAATTGATATTTATGTAAAGAATGTCTTTCATATTTATAAAGTTGATGAGTTTTAAAAAATATTTATAAAGTTGATGTATATATTCCGTAAGAAACAGGATTGGCTAATGTAACTCCAATCATCAAAGTCAAAACTAAAAAGATAACTCTATCTTTTTACTTACCATATAAATTTGGAAGTTCAAGCTTAAAATCTTTCTTTTTCTTTTCAGTTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAAT</genome_strand>
        <mrna_strand>CGGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG....................................................................................................................................................................................................................GAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAGACTGCTAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAAGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGGCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307758" ref_strand="+" ref_description="SGN-E307758 [cLEY-16-N11]">
      <seq>ggacactttctcaacccaattaccccaacagctcacgacggaacccttgaatctccaattttttcaattatcgaaacccctaatatttcaaaacttcgaaatcccaatttcgtagactgaaaacctaattgaatcgtaatggcatcgcagaagaaggaatcggagggaatcgctctactgtctatctatggcgacgacgaagatgaagacatggaagaagttgaagaagaacaaagggaagaagatgcacaagaacacagacctgaatcacataacttaggctttacaatgggcacagagttccaagatgatagcaaaaaagttttcgggtctgattcaggtcggagttcgactccttcacctctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctagcaaggtttcgaattttggtgttggttctaccactacgacgccattagcgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36497" stop="37616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36797" g_stop="37316" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E307758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36797" e_stop="37316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTA</genome_strand>
        <mrna_strand>GGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307676" ref_strand="+" ref_description="SGN-E307676 [cLEY-16-N12]">
      <seq>ggacactttttcaacccaattaccccaacagctcacgacggagcccttgagggtccatttttttcaattatcgaaacccctaatatttcaaaacttcgaaatcccaatttcgtagactgaaaacctaattgaatcgtaatggcatcgcagaagaaggaatcggagggaatcgctctactgtctatctatggcgacgacgaagatgaagacatggaagaagttgaagaagaacaaagggaagaagatgcacaagaacacagacctgaatcacataacttaggctttacaatgggcacagagttccaagatgatagcaaaaaagttttcgggtctgattcaggtcggagttcgactccttcacctctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctagcaaggtttcgaattttggtgttggttctaccactacgacgccattaacgtccgtttcttccccaaatcctcagccaatgggagatgaatttgaatgtgaatgtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36497" stop="37615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36797" g_stop="37315" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E307676" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36797" e_stop="37315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAAT-GGAGATGAATTTGAATGTGAATGTGAGT</genome_strand>
        <mrna_strand>GGACACTTTTTCAACCCAATTACCCCAACAGCTCACGACGGAGCCCTTGAGGGTCCATTTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAACGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGGAGATGAATTTGAATGTGAATGTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440696" ref_strand="+" ref_description="SGN-E440696 [cSTA-18-F8]">
      <seq>cgaggccgacgacgaagatgaagacatggaagaacttgaagaagaacaaagggaagaagatgccccaagaataccagacctgaatcacaaaacttagccattaccaatgggcaccagagtttcaagataatagcaataaagttttcgggtctgattcaggtcggagttcgactccttcacccctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctaataaggtttcgaattttggtgttggttctaccactacgacgccattagtgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagtagacgagcaaggcttactattgttgattatgctcatgatgaagttaccatgtcaccggagcctgaggaaggagaagtaatggccagtggaagagtcatgtacggagcggaacttcaaactgttagtgttgaatttatggaaaaggcttcaccagctcttcaggttagaacacctagtactcaaactcctcctcagtcagctgaaccaactgatcaaatggatgatactatggacttcgctgttaatgaaggacatggagtagctgaagaatctgttatggttcctgcagaagaaaaaaaagagttagatctgttggagaaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36682" stop="40251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36982" g_stop="37381" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37594" g_stop="37654" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="465" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39753" g_stop="39951" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="664" r_length="199" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E440696" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36982" e_stop="37381"/>
          <exon e_start="37594" e_stop="37654"/>
          <exon e_start="39753" e_stop="39951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATG-CACAAGAACA-CAGACCTGAATCACATAACTTAGGCTTTA-CAATGGGCA-CAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAGGTACTTATTTTTATGCTCTATTTTGAGTTGAATTTTGCTTTTTATTTTTTATTTTTTATGCTTGTTCAAAACGGACTGAAAAGAAGATGAGAAAATTAAGGATTTTGGCTTTTAGATTATGCTAGAAAACTCATGTGGGATCCTATTAGAGAGTTATTCATGTAATGAACCTATGATTTAGGAGTTGATGTGAGTTTTTCCTCTCTCTGTAGGAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTGGTATGTATGCTTTATGTTTTCTCTATTCAGCTCCGCCTCGTATGCTGTTTTGTTGTTATGCCCCTTGCTTGACTGCTTAGTTAAATTGACCTAGGAGTTATGCCTGGTATGGTTACATTGTTCAGGATAGGCAACTATTGTAATTCAACCATTTTTTTTCTCATTCCGCCATCTTAATTTTGTATGACTGTCTTTCCTAGGGAGTGGCACCTCTCCATTTACAGAAGCTGTTTCTTTTATAAATGTGGTGCCCACGACAGCTTTTGTGCATCTCGACTAATTTCCCAGGATAGGCGAAAAAGCGAAATGGTGTGATAGGCCCATGGGTTGGATCGTAAATTGGACCCTTCTATTTACGACCTTGTCAAACTGAACACTTAAAACTCAATGAATCACAATATTTTAAACACCTCTGACCATTGACCAAACTTATGTCAGCAATAAATAGCTGAGTTGGAAATGTACAATGTACACGCGGATTAAGGGCGTGAATTGATACTTTTCATTATAAATACACATATAATTAGGAATTTTCTGTTTTTAAAGAAGGAAAATAAATTTCTCCTTCCTCTTCTTATTTTCTGTAGAGAAAAAAAAATCAGGTAGCGCCGCCCTAGGTTTCTCATCCTCCAAACATACAAATTGAAAAGAAGAAGAAAATTTTTCCCATTGAAAGCTCAAATCAGAAATGGGTTATATGAAATCATATAGAAAGAAGTGTACAAATCCCTTTTTGGTTTGAATGGTTCTTTGGACTGATTTATTTGTCTTCAAATAAAAAACGGGTTATATGATTTGAGCATTTAATTCGAAGATTTCTTCTCTCTAAAATTGAAAGCTCAAGTTACAAGACTGTACGGGCTGAATCGAGAAACCTGATAACTCGGCTTCAGGGTGGGACGACTGAGCTGTTTGACTCGTTGCTTGGACTGTTATAGGAAGATGACAAGAATGTATTGATTGCAATAGCTCAAGGAATTATCCCGTTGCTGGTCCGTTTACTCGATTCGAGTTCTTCGCCAGAGATCAAGTAGAAAATTGTGAGTGCTTTTTTTGTCACAAAAAGGGGTAGGATGGGAGGTGGATTTGGATTTTGAGGGGGTGGGGGGCTAGAGGTGACCAGAAGAGAAAGGGGATGGGGAAAGGAGGTCCAATGAGAGAAATATAGCATTTTTAACATATTATTTATTTTCTTATGTTTAATTTACGTGGATTGCGCGTGTATTTGGTTGTATTTTCACCAACCATGATCAAGTGAGAAAAGGGTTTACAATATTGTGTTTCATTGAATTTAAGTGTTCAGTTGACAGGATCGTAAGCAGAAGGTTCCAATTTACAATCCGACCCAAGTATAAGGGCCTATCAAACCATTTCACCCCCTCCCCCCCCCTCCCCAGGATACCTGCAACCTCCCACTAACAATAGCTATCAGGTAACTCTGCCACTAAGGCTAGAATAGATGGGAAGAAATCACCTAGTGTTTTTTGTCTCTGCTGGTTCAATGCTCTCAACTCACTTCATTGATCACTAGGCCACACCATTGGGTGCCCATTTACTGAAACTTTTTATAATCTCAATTTCCATTTTTCCCCTTGTTCATGCACTCCGATAAAAATTGATATGACTTGTTGTGGACTCCACTTGATATTGAAAGAAAGCAAGTCTGGCAAGATACTTTTGGTATGCATATTTAGTTTGTGTCAAAATTTCTTATTTTTCTTTAATTCCCGTATCCAATCAAATAATTCAGAATGAAATGGGACAAGGGAGTGTTTTATGAGCTTATCCAAAGAACATTGGTGCAACTTTTGGGTTGAAATAAATCATTTTTAGCTGGTTAGCTTGTTATTTGTTAAGAAGTTGACATTTACCGTTTTTGATCCATATAATTGATATTTATGTAAAGAATGTCTTTCATATTTATAAAGTTGATGAGTTTTAAAAAATATTTATAAAGTTGATGTATATATTCCGTAAGAAACAGGATTGGCTAATGTAACTCCAATCATCAAAGTCAAAACTAAAAAGATAACTCTATCTTTTTACTTACCATATAAATTTGGAAGTTCAAGCTTAAAATCTTTCTTTTTCTTTTCAGTTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAATGAAGGACATGGAGTTGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCT</genome_strand>
        <mrna_strand>CGAGGCCGACGACGAAGATGAAGACATGGAAGAACTTGAAGAAGAACAAAGGGAAGAAGATGCCCCAAGAATACCAGACCTGAATCACAAAACTTAGCCATTACCAATGGGCACCAGAGTTTCAAGATAATAGCAATAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCCCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAATAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGTGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTTACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG....................................................................................................................................................................................................................GAAGGAGAAGTAATGGCCAGTGGAAGAGTCATGTACGGAGCGGAACTTCAAACTGTTAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTACTCAAACTCCTCCTCAGTCAGCTGAACCAACTGATCAAATGGATGATACTATGGACTTCGCTGTTAATGAAGGACATGGAGTAGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAAAAAAAAGAGTTAGATCTGTTGGAGAAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417239" ref_strand="+" ref_description="SGN-E417239 [STM-25-G7]">
      <seq>cgacgacgaagatgaagacatggaagaacttgaagaagaacaaagggaagaagatgcacaagaatacagacctgaatcacaaaacttagccattacaatgggcacagagtttcaagataatagcaataaagttttcgggtctgattcaggtcggagttcgactccttcacccctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctaataaggtttcgaattttggtgttggttctaccactacgacgccattagtgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagtagacgagcaaggcttactattgttgattatgctcatgatgaagttaccatgtcaccggagcctgaggaaggagaagtaatggccagtggaagagtcatgtacggagcggaacttcaaactgttagtgttgaatttatggaaaaggcttcaccagctcttcaggttagaacacctagtactcaaactcctcctcagtcagctgaaccaactgatcaaatggatgatactatggacttcgctgntaatgaaggacatggagtagctgaagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36688" stop="40198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36988" g_stop="37381" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37594" g_stop="37654" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="455" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39753" g_stop="39898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="601" r_length="146" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E417239" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36988" e_stop="37381"/>
          <exon e_start="37594" e_stop="37654"/>
          <exon e_start="39753" e_stop="39898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAGGTACTTATTTTTATGCTCTATTTTGAGTTGAATTTTGCTTTTTATTTTTTATTTTTTATGCTTGTTCAAAACGGACTGAAAAGAAGATGAGAAAATTAAGGATTTTGGCTTTTAGATTATGCTAGAAAACTCATGTGGGATCCTATTAGAGAGTTATTCATGTAATGAACCTATGATTTAGGAGTTGATGTGAGTTTTTCCTCTCTCTGTAGGAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTGGTATGTATGCTTTATGTTTTCTCTATTCAGCTCCGCCTCGTATGCTGTTTTGTTGTTATGCCCCTTGCTTGACTGCTTAGTTAAATTGACCTAGGAGTTATGCCTGGTATGGTTACATTGTTCAGGATAGGCAACTATTGTAATTCAACCATTTTTTTTCTCATTCCGCCATCTTAATTTTGTATGACTGTCTTTCCTAGGGAGTGGCACCTCTCCATTTACAGAAGCTGTTTCTTTTATAAATGTGGTGCCCACGACAGCTTTTGTGCATCTCGACTAATTTCCCAGGATAGGCGAAAAAGCGAAATGGTGTGATAGGCCCATGGGTTGGATCGTAAATTGGACCCTTCTATTTACGACCTTGTCAAACTGAACACTTAAAACTCAATGAATCACAATATTTTAAACACCTCTGACCATTGACCAAACTTATGTCAGCAATAAATAGCTGAGTTGGAAATGTACAATGTACACGCGGATTAAGGGCGTGAATTGATACTTTTCATTATAAATACACATATAATTAGGAATTTTCTGTTTTTAAAGAAGGAAAATAAATTTCTCCTTCCTCTTCTTATTTTCTGTAGAGAAAAAAAAATCAGGTAGCGCCGCCCTAGGTTTCTCATCCTCCAAACATACAAATTGAAAAGAAGAAGAAAATTTTTCCCATTGAAAGCTCAAATCAGAAATGGGTTATATGAAATCATATAGAAAGAAGTGTACAAATCCCTTTTTGGTTTGAATGGTTCTTTGGACTGATTTATTTGTCTTCAAATAAAAAACGGGTTATATGATTTGAGCATTTAATTCGAAGATTTCTTCTCTCTAAAATTGAAAGCTCAAGTTACAAGACTGTACGGGCTGAATCGAGAAACCTGATAACTCGGCTTCAGGGTGGGACGACTGAGCTGTTTGACTCGTTGCTTGGACTGTTATAGGAAGATGACAAGAATGTATTGATTGCAATAGCTCAAGGAATTATCCCGTTGCTGGTCCGTTTACTCGATTCGAGTTCTTCGCCAGAGATCAAGTAGAAAATTGTGAGTGCTTTTTTTGTCACAAAAAGGGGTAGGATGGGAGGTGGATTTGGATTTTGAGGGGGTGGGGGGCTAGAGGTGACCAGAAGAGAAAGGGGATGGGGAAAGGAGGTCCAATGAGAGAAATATAGCATTTTTAACATATTATTTATTTTCTTATGTTTAATTTACGTGGATTGCGCGTGTATTTGGTTGTATTTTCACCAACCATGATCAAGTGAGAAAAGGGTTTACAATATTGTGTTTCATTGAATTTAAGTGTTCAGTTGACAGGATCGTAAGCAGAAGGTTCCAATTTACAATCCGACCCAAGTATAAGGGCCTATCAAACCATTTCACCCCCTCCCCCCCCCTCCCCAGGATACCTGCAACCTCCCACTAACAATAGCTATCAGGTAACTCTGCCACTAAGGCTAGAATAGATGGGAAGAAATCACCTAGTGTTTTTTGTCTCTGCTGGTTCAATGCTCTCAACTCACTTCATTGATCACTAGGCCACACCATTGGGTGCCCATTTACTGAAACTTTTTATAATCTCAATTTCCATTTTTCCCCTTGTTCATGCACTCCGATAAAAATTGATATGACTTGTTGTGGACTCCACTTGATATTGAAAGAAAGCAAGTCTGGCAAGATACTTTTGGTATGCATATTTAGTTTGTGTCAAAATTTCTTATTTTTCTTTAATTCCCGTATCCAATCAAATAATTCAGAATGAAATGGGACAAGGGAGTGTTTTATGAGCTTATCCAAAGAACATTGGTGCAACTTTTGGGTTGAAATAAATCATTTTTAGCTGGTTAGCTTGTTATTTGTTAAGAAGTTGACATTTACCGTTTTTGATCCATATAATTGATATTTATGTAAAGAATGTCTTTCATATTTATAAAGTTGATGAGTTTTAAAAAATATTTATAAAGTTGATGTATATATTCCGTAAGAAACAGGATTGGCTAATGTAACTCCAATCATCAAAGTCAAAACTAAAAAGATAACTCTATCTTTTTACTTACCATATAAATTTGGAAGTTCAAGCTTAAAATCTTTCTTTTTCTTTTCAGTTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAATGAAGGACATGGAGTTGCTGAAGAATCT</genome_strand>
        <mrna_strand>CGACGACGAAGATGAAGACATGGAAGAACTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAATACAGACCTGAATCACAAAACTTAGCCATTACAATGGGCACAGAGTTTCAAGATAATAGCAATAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCCCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAATAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGTGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTTACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG....................................................................................................................................................................................................................GAAGGAGAAGTAATGGCCAGTGGAAGAGTCATGTACGGAGCGGAACTTCAAACTGTTAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTACTCAAACTCCTCCTCAGTCAGCTGAACCAACTGATCAAATGGATGATACTATGGACTTCGCTGNTAATGAAGGACATGGAGTAGCTGAAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487020" ref_strand="+" ref_description="SGN-E487020 [cSTE-24-A1]">
      <seq>agaatacagacctgaatcacaaaacttagccattacaatgggcacagagttccaagataatagcaataaagttttcgggtctgattcaggtcggagttcgactccttcacccctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctaataaggtttcgaattttggtgttggttctaccactacgacgccattagtgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagtagacgagcaaggcttactattgttgattatgctcatgatgaagttaccatgtcaccggagcctgaggaaggagaagtaatggccagtggaagagtcatgtacggagcggaacttcaaactgttagtgttgaatttatggaaaaggcttcaccagctcttcaggacatggagtagctgaagaatctgttatggttcctgcagaagaaaaaaaagagttagatctgttggagaaatttcttcctcctccaccaaaggagaagtgctcagatgaattgcaacgcctttctgtagtagttggtgaaggaatgtttacatgtggactggctgaccatgaactctgtgctcgctaaatctctctctcctctcacagacagaatgtctcagtctatctctccctctcactcacacacacacacacacacacacacgaagtttgcatttcctgtaattttgtctctagattctatcccttcagatactngacattgtttgtaaaagctgtctgtcttcagttaccgtggcattggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36748" stop="40774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37048" g_stop="37381" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37594" g_stop="37654" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="395" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39753" g_stop="39787" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="430" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39788" i_stop="39875" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39876" g_stop="39991" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="546" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39992" i_stop="40223" i_length="232">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40224" g_stop="40474" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="800" r_length="254" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E487020" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37048" e_stop="37381"/>
          <exon e_start="37594" e_stop="37654"/>
          <exon e_start="39753" e_stop="39787"/>
          <exon e_start="39876" e_stop="39991"/>
          <exon e_start="40224" e_stop="40474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAGGTACTTATTTTTATGCTCTATTTTGAGTTGAATTTTGCTTTTTATTTTTTATTTTTTATGCTTGTTCAAAACGGACTGAAAAGAAGATGAGAAAATTAAGGATTTTGGCTTTTAGATTATGCTAGAAAACTCATGTGGGATCCTATTAGAGAGTTATTCATGTAATGAACCTATGATTTAGGAGTTGATGTGAGTTTTTCCTCTCTCTGTAGGAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTGGTATGTATGCTTTATGTTTTCTCTATTCAGCTCCGCCTCGTATGCTGTTTTGTTGTTATGCCCCTTGCTTGACTGCTTAGTTAAATTGACCTAGGAGTTATGCCTGGTATGGTTACATTGTTCAGGATAGGCAACTATTGTAATTCAACCATTTTTTTTCTCATTCCGCCATCTTAATTTTGTATGACTGTCTTTCCTAGGGAGTGGCACCTCTCCATTTACAGAAGCTGTTTCTTTTATAAATGTGGTGCCCACGACAGCTTTTGTGCATCTCGACTAATTTCCCAGGATAGGCGAAAAAGCGAAATGGTGTGATAGGCCCATGGGTTGGATCGTAAATTGGACCCTTCTATTTACGACCTTGTCAAACTGAACACTTAAAACTCAATGAATCACAATATTTTAAACACCTCTGACCATTGACCAAACTTATGTCAGCAATAAATAGCTGAGTTGGAAATGTACAATGTACACGCGGATTAAGGGCGTGAATTGATACTTTTCATTATAAATACACATATAATTAGGAATTTTCTGTTTTTAAAGAAGGAAAATAAATTTCTCCTTCCTCTTCTTATTTTCTGTAGAGAAAAAAAAATCAGGTAGCGCCGCCCTAGGTTTCTCATCCTCCAAACATACAAATTGAAAAGAAGAAGAAAATTTTTCCCATTGAAAGCTCAAATCAGAAATGGGTTATATGAAATCATATAGAAAGAAGTGTACAAATCCCTTTTTGGTTTGAATGGTTCTTTGGACTGATTTATTTGTCTTCAAATAAAAAACGGGTTATATGATTTGAGCATTTAATTCGAAGATTTCTTCTCTCTAAAATTGAAAGCTCAAGTTACAAGACTGTACGGGCTGAATCGAGAAACCTGATAACTCGGCTTCAGGGTGGGACGACTGAGCTGTTTGACTCGTTGCTTGGACTGTTATAGGAAGATGACAAGAATGTATTGATTGCAATAGCTCAAGGAATTATCCCGTTGCTGGTCCGTTTACTCGATTCGAGTTCTTCGCCAGAGATCAAGTAGAAAATTGTGAGTGCTTTTTTTGTCACAAAAAGGGGTAGGATGGGAGGTGGATTTGGATTTTGAGGGGGTGGGGGGCTAGAGGTGACCAGAAGAGAAAGGGGATGGGGAAAGGAGGTCCAATGAGAGAAATATAGCATTTTTAACATATTATTTATTTTCTTATGTTTAATTTACGTGGATTGCGCGTGTATTTGGTTGTATTTTCACCAACCATGATCAAGTGAGAAAAGGGTTTACAATATTGTGTTTCATTGAATTTAAGTGTTCAGTTGACAGGATCGTAAGCAGAAGGTTCCAATTTACAATCCGACCCAAGTATAAGGGCCTATCAAACCATTTCACCCCCTCCCCCCCCCTCCCCAGGATACCTGCAACCTCCCACTAACAATAGCTATCAGGTAACTCTGCCACTAAGGCTAGAATAGATGGGAAGAAATCACCTAGTGTTTTTTGTCTCTGCTGGTTCAATGCTCTCAACTCACTTCATTGATCACTAGGCCACACCATTGGGTGCCCATTTACTGAAACTTTTTATAATCTCAATTTCCATTTTTCCCCTTGTTCATGCACTCCGATAAAAATTGATATGACTTGTTGTGGACTCCACTTGATATTGAAAGAAAGCAAGTCTGGCAAGATACTTTTGGTATGCATATTTAGTTTGTGTCAAAATTTCTTATTTTTCTTTAATTCCCGTATCCAATCAAATAATTCAGAATGAAATGGGACAAGGGAGTGTTTTATGAGCTTATCCAAAGAACATTGGTGCAACTTTTGGGTTGAAATAAATCATTTTTAGCTGGTTAGCTTGTTATTTGTTAAGAAGTTGACATTTACCGTTTTTGATCCATATAATTGATATTTATGTAAAGAATGTCTTTCATATTTATAAAGTTGATGAGTTTTAAAAAATATTTATAAAGTTGATGTATATATTCCGTAAGAAACAGGATTGGCTAATGTAACTCCAATCATCAAAGTCAAAACTAAAAAGATAACTCTATCTTTTTACTTACCATATAAATTTGGAAGTTCAAGCTTAAAATCTTTCTTTTTCTTTTCAGTTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAATGAAGGACATGGAGTTGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAAGTAAGTGTGGTGACAGTAGTATTTTTCAAATGGATACTAGAAATATGCTTCCATAAAATGTATATGCACTATTCTGAGGTTTCCGAGTTTTCTCTAATAGATGTTGAAAGTTGAAGATTGCATCTTCAGTTTTGTTTCTGTAGTGTACGTTTAGATGATATTGGTAATTTATATGTGTCTTGCGTTATATGTTTATTTTATGTCTTTTAAAACGACTTTGCATTTTATGCAGTGCCTTTCTGTAGTAGTTTGTGAAGGAATGTTTACATGTGGACTGGCTGACGTTGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTCTATCTCTCCCTCTCACT----CAGACACACACACGCACACACGAAGTTTGCATTTCCTGTAATTTCATCTCTAGATTCTTATCACTTCAGATACTGACAATTGTTTGTAAAAGCTGTCTGTCTTCAGTAACCGTGGCATTGGATGCT</genome_strand>
        <mrna_strand>AGAATACAGACCTGAATCACAAAACTTAGCCATTACAATGGGCACAGAGTTCCAAGATAATAGCAATAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCCCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAATAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGTGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTTACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG....................................................................................................................................................................................................................GAAGGAGAAGTAATGGCCAGTGGAAGAGTCATGTACGGAGCGGAACTTCAAACTGTTAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAG........................................................................................GACATGGAGTAGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAAAAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAA........................................................................................................................................................................................................................................CGCCTTTCTGTAGTAGTTGGTGAAGGAATGTTTACATGTGGACTGGCTGACCATGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTCTATCTCTCCCTCTCACTCACACACACACACACACACACACACGAAGTTTGCATTTCCTGTAATTTTGTCTCTAGATTC-TATCCCTTCAGATACTNGACATTGTTTGTAAAAGCTGTCTGTCTTCAGTTACCGTGGCATTGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427454" ref_strand="+" ref_description="SGN-E427454 [STM-48-D1]">
      <seq>agaatacagacctgaatcacaaaacttagccattacaatgggcacagagttccaagataatagcaataaagttttcgggtctgattcaggtcggagttcgactccttcacccctaattcaacaacttcagcaacaacagtctgttgaaaatttcacacctaataaggtttcgaattttggtgttggttctaccactacgacgccattagtgtccgtttcttccccaaatcctcagccaatggagatgaatttgaatgtgaatgtgagtagacgagcaaggcttactattgttgattatgctcatgatgaagttaccatgtcaccggagcctgaggaaggagaagtaatggccagtggaagagtcatgtacggagcggaacttcaaactgttagtgttgaatttatggaaaaggcttcaccagctcttcaggacatggagtagctgaagaatctgttatggttcctgcagaagaaaaaaaagagttagatctgttggagaaatttcttcctcctccaccaaaggagaagtgctcagatgaattgcaacgcctttctgtagtagttggtgaaggaatgtttacatgtggactggctgaccatgaactctgtgctcgctaaatctctctctcctctcacagacagaatgtctcagtntatctctccctctcactcncacacacacacacacacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="36748" stop="40669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37048" g_stop="37381" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37594" g_stop="37654" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="395" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39753" g_stop="39787" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="430" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39788" i_stop="39875" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39876" g_stop="39991" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="546" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39992" i_stop="40223" i_length="232">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40224" g_stop="40370" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="693" r_length="147" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E427454" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37048" e_stop="37381"/>
          <exon e_start="37594" e_stop="37654"/>
          <exon e_start="39753" e_stop="39787"/>
          <exon e_start="39876" e_stop="39991"/>
          <exon e_start="40224" e_stop="40370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAGGTACTTATTTTTATGCTCTATTTTGAGTTGAATTTTGCTTTTTATTTTTTATTTTTTATGCTTGTTCAAAACGGACTGAAAAGAAGATGAGAAAATTAAGGATTTTGGCTTTTAGATTATGCTAGAAAACTCATGTGGGATCCTATTAGAGAGTTATTCATGTAATGAACCTATGATTTAGGAGTTGATGTGAGTTTTTCCTCTCTCTGTAGGAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTGGTATGTATGCTTTATGTTTTCTCTATTCAGCTCCGCCTCGTATGCTGTTTTGTTGTTATGCCCCTTGCTTGACTGCTTAGTTAAATTGACCTAGGAGTTATGCCTGGTATGGTTACATTGTTCAGGATAGGCAACTATTGTAATTCAACCATTTTTTTTCTCATTCCGCCATCTTAATTTTGTATGACTGTCTTTCCTAGGGAGTGGCACCTCTCCATTTACAGAAGCTGTTTCTTTTATAAATGTGGTGCCCACGACAGCTTTTGTGCATCTCGACTAATTTCCCAGGATAGGCGAAAAAGCGAAATGGTGTGATAGGCCCATGGGTTGGATCGTAAATTGGACCCTTCTATTTACGACCTTGTCAAACTGAACACTTAAAACTCAATGAATCACAATATTTTAAACACCTCTGACCATTGACCAAACTTATGTCAGCAATAAATAGCTGAGTTGGAAATGTACAATGTACACGCGGATTAAGGGCGTGAATTGATACTTTTCATTATAAATACACATATAATTAGGAATTTTCTGTTTTTAAAGAAGGAAAATAAATTTCTCCTTCCTCTTCTTATTTTCTGTAGAGAAAAAAAAATCAGGTAGCGCCGCCCTAGGTTTCTCATCCTCCAAACATACAAATTGAAAAGAAGAAGAAAATTTTTCCCATTGAAAGCTCAAATCAGAAATGGGTTATATGAAATCATATAGAAAGAAGTGTACAAATCCCTTTTTGGTTTGAATGGTTCTTTGGACTGATTTATTTGTCTTCAAATAAAAAACGGGTTATATGATTTGAGCATTTAATTCGAAGATTTCTTCTCTCTAAAATTGAAAGCTCAAGTTACAAGACTGTACGGGCTGAATCGAGAAACCTGATAACTCGGCTTCAGGGTGGGACGACTGAGCTGTTTGACTCGTTGCTTGGACTGTTATAGGAAGATGACAAGAATGTATTGATTGCAATAGCTCAAGGAATTATCCCGTTGCTGGTCCGTTTACTCGATTCGAGTTCTTCGCCAGAGATCAAGTAGAAAATTGTGAGTGCTTTTTTTGTCACAAAAAGGGGTAGGATGGGAGGTGGATTTGGATTTTGAGGGGGTGGGGGGCTAGAGGTGACCAGAAGAGAAAGGGGATGGGGAAAGGAGGTCCAATGAGAGAAATATAGCATTTTTAACATATTATTTATTTTCTTATGTTTAATTTACGTGGATTGCGCGTGTATTTGGTTGTATTTTCACCAACCATGATCAAGTGAGAAAAGGGTTTACAATATTGTGTTTCATTGAATTTAAGTGTTCAGTTGACAGGATCGTAAGCAGAAGGTTCCAATTTACAATCCGACCCAAGTATAAGGGCCTATCAAACCATTTCACCCCCTCCCCCCCCCTCCCCAGGATACCTGCAACCTCCCACTAACAATAGCTATCAGGTAACTCTGCCACTAAGGCTAGAATAGATGGGAAGAAATCACCTAGTGTTTTTTGTCTCTGCTGGTTCAATGCTCTCAACTCACTTCATTGATCACTAGGCCACACCATTGGGTGCCCATTTACTGAAACTTTTTATAATCTCAATTTCCATTTTTCCCCTTGTTCATGCACTCCGATAAAAATTGATATGACTTGTTGTGGACTCCACTTGATATTGAAAGAAAGCAAGTCTGGCAAGATACTTTTGGTATGCATATTTAGTTTGTGTCAAAATTTCTTATTTTTCTTTAATTCCCGTATCCAATCAAATAATTCAGAATGAAATGGGACAAGGGAGTGTTTTATGAGCTTATCCAAAGAACATTGGTGCAACTTTTGGGTTGAAATAAATCATTTTTAGCTGGTTAGCTTGTTATTTGTTAAGAAGTTGACATTTACCGTTTTTGATCCATATAATTGATATTTATGTAAAGAATGTCTTTCATATTTATAAAGTTGATGAGTTTTAAAAAATATTTATAAAGTTGATGTATATATTCCGTAAGAAACAGGATTGGCTAATGTAACTCCAATCATCAAAGTCAAAACTAAAAAGATAACTCTATCTTTTTACTTACCATATAAATTTGGAAGTTCAAGCTTAAAATCTTTCTTTTTCTTTTCAGTTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAATGAAGGACATGGAGTTGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAAGTAAGTGTGGTGACAGTAGTATTTTTCAAATGGATACTAGAAATATGCTTCCATAAAATGTATATGCACTATTCTGAGGTTTCCGAGTTTTCTCTAATAGATGTTGAAAGTTGAAGATTGCATCTTCAGTTTTGTTTCTGTAGTGTACGTTTAGATGATATTGGTAATTTATATGTGTCTTGCGTTATATGTTTATTTTATGTCTTTTAAAACGACTTTGCATTTTATGCAGTGCCTTTCTGTAGTAGTTTGTGAAGGAATGTTTACATGTGGACTGGCTGACGTTGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTCTATCTCTCCCTCTCACTCAGACACACACACGCACACACG</genome_strand>
        <mrna_strand>AGAATACAGACCTGAATCACAAAACTTAGCCATTACAATGGGCACAGAGTTCCAAGATAATAGCAATAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCCCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAATAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGTGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTTACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG....................................................................................................................................................................................................................GAAGGAGAAGTAATGGCCAGTGGAAGAGTCATGTACGGAGCGGAACTTCAAACTGTTAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAG........................................................................................GACATGGAGTAGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAAAAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAA........................................................................................................................................................................................................................................CGCCTTTCTGTAGTAGTTGGTGAAGGAATGTTTACATGTGGACTGGCTGACCATGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTNTATCTCTCCCTCTCACTCNCACACACACACACACACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338363" ref_strand="+" ref_description="SGN-E338363 [cTOE-13-L18]">
      <seq>aagaatctgttatggttcctgcagaagaacaaaaagagttagatctgttggagaaatttcttcctcctccaccaaaggagaagtgctcagatgaattgcaagagaagatcatgaaattccttgctctgaagaagactactggcagaagctttaatgcagaagtacgcaacagaaaggagtatcggaatccagacttcttgctgcattcagtgacttatcaagatattgaccagataggatcttgcttcagcaaagacgtattcgatccgcatggatatgacaaaagcgacttctatgatgaaatagaggctgactcaaagcgtgaaatggagagaagggagcaagaacggaggaggagtccaaaagttgacttcatatcgggaggaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="39591" stop="41720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39891" g_stop="39991" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39992" i_stop="40710" i_length="719">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40711" g_stop="40915" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="306" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40916" i_stop="41335" i_length="420">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41336" g_stop="41420" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="391" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E338363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39891" e_stop="39991"/>
          <exon e_start="40711" e_stop="40915"/>
          <exon e_start="41336" e_stop="41420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAAGTAAGTGTGGTGACAGTAGTATTTTTCAAATGGATACTAGAAATATGCTTCCATAAAATGTATATGCACTATTCTGAGGTTTCCGAGTTTTCTCTAATAGATGTTGAAAGTTGAAGATTGCATCTTCAGTTTTGTTTCTGTAGTGTACGTTTAGATGATATTGGTAATTTATATGTGTCTTGCGTTATATGTTTATTTTATGTCTTTTAAAACGACTTTGCATTTTATGCAGTGCCTTTCTGTAGTAGTTTGTGAAGGAATGTTTACATGTGGACTGGCTGACGTTGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTCTATCTCTCCCTCTCACTCAGACACACACACGCACACACGAAGTTTGCATTTCCTGTAATTTCATCTCTAGATTCTTATCACTTCAGATACTGACAATTGTTTGTAAAAGCTGTCTGTCTTCAGTAACCGTGGCATTGGATGCTCTGTTATCTTTAACTGATATACTCGGGAGCTTAACTTGCAATTTACGTCCTCCTAAAGTGATCCGTTATAACTTCTACAGTGACTCTGATCATTTTTGTCTTCCTTTCCAATTTTATGTGAACCTTACTGTTTATGTATAAGAAGGCCTTATGGTGTTTACCCTGTTGCATAGATAATTGATTTGGCTACTTTGCTTTCAATTGTTACACTGTTTTCTTGTTAATTCATTCTGCAGGAGAAGATCATGAAATTCCTTGCTCTGAAGAAGACTACTGGCAGAAGCTTTAATGCAGAAGTACGCAACAGAAAGGAGTATCGGAATCCAGACTTCTTGCTGCATTCAGTGACTTATCAAGATATTGACCAGATAGGATCTTGCTTCAGCAAAGACGTATTCGATCCGCATGGATATGACAAAAGCGACTTCTATGATGAAATAGGTTACTAGCAATAAAATTTCTGTCTTCTGTCTATCTTTCAGCTAGATATATCTACTTTTGTGTGGCATTGGTTATAGAATGTTTAGACAGTGTTTGCTACTTCCGCTGTAATGTTTTTGTTAACAAAATAGTTCATTCTGTGAATCTGGAACGGTAACGATGGATACTTATGGATCTAATTGTGTGTCACAAGGATTCTGACGGTGTGTAGCTAATACTATACTTCCCTTTCCAACTTATTGTTTGGAGCTAGTGTAAAGGATATCTAGTTCTTTTGAGTTTAAGCTTTCATGAAATTTGGTCTGTTTCAGTGCAAGAATAGTTTTCCTCAAATTTATGGATAATTTCTTGTCTTTGAAGTATATCTTATCATACTTTATCCAAAAGAAATCTTGACTGGAACATTTATTTTGTAAACAGAGGCTGACTCAAAGCGTGAAATGGAGAGAAGGGAGCAAGAACGGAGGAGGAGTCCAAAAGTTGACTTCATATCGGGAGGAACACA</genome_strand>
        <mrna_strand>AAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCATGAAATTCCTTGCTCTGAAGAAGACTACTGGCAGAAGCTTTAATGCAGAAGTACGCAACAGAAAGGAGTATCGGAATCCAGACTTCTTGCTGCATTCAGTGACTTATCAAGATATTGACCAGATAGGATCTTGCTTCAGCAAAGACGTATTCGATCCGCATGGATATGACAAAAGCGACTTCTATGATGAAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGACTCAAAGCGTGAAATGGAGAGAAGGGAGCAAGAACGGAGGAGGAGTCCAAAAGTTGACTTCATATCGGGAGGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544586" ref_strand="+" ref_description="SGN-E544586 [TUS-66-P23](-)">
      <seq>gcgtgaaatggagagaagggagcaagaacggaggaggagtccaaaagttgacttcatatcgggaggaacacagcctgcaccgatggttcctacaccaaaaatcaatctgtcgattccagggatggctcctgttgctgctggtgcattaccgcccactgtagatgttgtaactcgggatggtagacagaacaaaaagtcgaaatgggacaaggtggatggtgatcggagagaccctgtttctgctgttggtgcacatgcagcacttctatcagctgctaatgctggtgctggttacactgcatttgcgcaacaaagacgtcgggaggcagaagagaagcgacctagtgacaagaagttggatagaagatcttgaaaatctaattagacatgcgactcctgaaagctattgaccctttccaacacatccagtcatgcacaagtgttggcacaaagaaagcagttagagcaacgggtgcctcatttagaaagacaaattactgtcaactctgaatattcccatatactgtatatacccagtttttgtttagtagtgaagtcgattccaggtttcacaagttcaaggagtgtcgagttttccatataaagctggggagaaaacaaatgccccagtcttcttttgcccatgtgcccccatcgattcccaattattaagttgtactctttgccctagagtcctaaaagagctgaatttttttaatgtacttgaaaagttaaccaatatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="41049" stop="44762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41349" g_stop="41467" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41468" i_stop="41552" i_length="85">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41553" g_stop="41644" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="211" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41645" i_stop="41734" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41829" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="306" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41830" i_stop="44035" i_length="2206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44036" g_stop="44458" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="730" r_length="424" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E544586" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41349" e_stop="41467"/>
          <exon e_start="41553" e_stop="41644"/>
          <exon e_start="41735" e_stop="41829"/>
          <exon e_start="44036" e_stop="44458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGAAATGGAGAGAAGGGAGCAAGAACGGAGGAGGAGTCCAAAAGTTGACTTCATATCGGGAGGAACACAGCCTGCACCGATGGTTCCTACACCAAAAATCAATCTGTCGATTCCAGGTTACCCACCTTTCTTCCTCGAGTCAAAATTTCTGTTGAATTGGTTGAGTTCCCTGCATCACTTTGCTCTCTGAATTCTTTGCAGGGATGGCTCCTGTTGCTGCTGGTGCATTACCGCCCACTGTAGATGTTGTAACTCGGGATGGTAGACAGAACAAAAAGTCGAAATGGGACAAGGTTTTCATCTGCAAAGTCTCAATTAATTGCATTGATTATAATTTATCTCCAATGTCTCTTGTATTGTAATCTTCAATGCTACCTTTTCAGGTGGATGGTGATCGGAGAGACCCTGTTTCTGCTGTTGGTGCACATGCAGCACTTCTATCAGCTGCTAATGCTGGTGCTGGTTACACTGCATTTGCGTAAGTTCATTATGACTCCCATTTTTAACTGTATTACTTAGTTATTTTAGAATTTCTTTCCATCACGCACCATGGGATGGGAAAGCCTTAGATTCGTAGGGTGGACTTCTAGCTATCTAACAAAAATGAGACTCGTGTATTACTTTCTGGAAAATAAATGATGTCGAGTATGGTGAATTAAAAACGAAACATGTTGTTCAAGTCCCATATCTTTTGATCTTTTACATATTGTGGCGACCCATAGATTCCTCTAAGATATACCTTGTTGGAAGTGTGCAAATGTTTAAATAGGTTGAGCACCTGCTTTGACTGACCTAGGGGCGCAACTTCAGCCCATATAAGGTGAAAGGAAACCATTTAACCTATATTTATTTATATGGATCACTCATATTTTCTAAATGGGTAAACATGGGCTAATCTATTTTAACTTTTAAGAGCTCATACAAATATGCACAAAATAGGTAAATTATGAGAATCCATATAGACCCATAGATCATCGACTCATAAGAAAAATTCTTCATCGCATAAAAAAATTATTTATTTTTATAAAAGAACATTAGGAGTAGGGTTAGAGGTGAGGGTGAAAAAAATTTAACTTCTTTTTTTGATTTTTTCTTTCTAAAAAATTGTGGGTGGGTGAGGGTAGGGTGGAGGTAGGGGTTTATGAAAAAAAAATTAACTTTTCTTTTTTGATTTTTTTAAAAATAATTGTAGGTGGGGTCGGGGCAGGGAGGTCTGCAGGGGATTAATTATTTTTTGAATTTTTTATTTTTATTTAAAAAAATTTGGGAGTGGAGGTACGGTGGAAGTGGGAGTGGAAGCGGTGAAATTTTTTAACTTTTTCTTTTGAAGTTTTTATTTTTCTTTAAAAAAAAATTTGGGGTAGGGTGGAGGAACATTTTTTTTTTTTGAAATTTATGTCAATATTTTTTTTTAAAAAAAATGGTGGTGGAGCGGGGATTGGTAGGATGGACAAATTTTTCTGATATTTTTTAAATTGAAAATTGGGGGTGGGGGATTGGGTACAGTGGTAGAAAAAATTAATTTTTTTTTGTATGAATTTTTTTTTTAGTTATTCTTTAAGAATAGGGGTGGGTTGGTAGGAGTTTGGCTTTAGGAGATCAAAGTGGGTTAGAACCATTTTACCTAAACCATACTTACTCATATTTTATGTGGGTGAATTGTAATCCAATCCATTTTGGCTCAATCCATATTTAATCCATCAATTCCGATCCAGTCAAACCATTTGCCACCCCAACTTAGTCCGACCATTTGCCAACCCAACTTTGGCGTTTGAGCAAGATTTGAGAATACTGGAAAATGGTTATCTAGCCTCTTATTTATCTGTAGAATGGTGAAGTATTGGTTTCTTAGGAGATACTCCTTTAATGATATTGTATGCTCTTTTCTTTTGGTGAAATCTTATCCTATCTTTATGTAGGTTGACTGGTTGAGGCACTTTTCCTGCCTAGCTGTTGTATTCTTAATGTTTGTAACATCCATTTTCTGGTGAAAATTTTGACAAAAGCATCTCATTCTCAAGTTCACATGGAACTCACTATACTCCCCTGACAAAAACATCTCATTCTCAATTCATAAGGAGTTTCCCGGCATTTGTGCTGTCTGTGAAATTAGTAGAGGAAAGAAAAGACTTCCTATACTTGGTGGATAGAGTTACTTGGTATATATATGGATGGAGGTAGGAGGTATAACGTGGAATTAGTTGAAGTGCGCAAGAACTAAAAGGAGTTTCTTTAGATTAGACACACTTCTTAGGACACTGCTATTTCTATTCGGGGGTGGGGGGGGGGGGGTGGGGGTTATATTTTTGTTTTAGTCAAACTTGTAGAAAAAAGTGAACTTCAAATTACAGGGGGAGGGGGGGGGGGGGGGTTTACATCCTGAAATACCAGTCTAATAGCTTTCACACTCAAATGATAGGAACAATCCATGCTGTCTAATTCATTCACACACACTTGAACTTCTATTTAAGTTTCACTCCATATTGTTTCTGTGGGTCATGCAACCCTATCCTCACTGAGTAGCTAGTACTTAGGGACTTCATTGAAAAATGAGATTCACGTTTCACCTTTTTATTACCCTTTGAAGTCCAAAGACCTTTTATCCTCGTTGTTTTCAGATGTAGACATGTTTGATGTTTCATTCAGCAGAGGGTGGAGTGATGTTTAATTTTTGTTTTCCACAGGCAACAAAGACGTCGGGAGGCAGAAGAGAAGCGACCTAGTGACAAGAAGTTGGATAGAAGATCTTGAAAATCTAATTAGACATGCGACTCCTGAAAGCTATTGACCCTTTCCAACACATCCAGTCATGCACAAGTGTTGGCACAAAGAAAGCAGTTAGAGCAACGGGTGCCTCATTTAGAAAGACAAATTACTGTCAACTCTGAATATTCCCATATACTGTATATACCCAGTTTTTGTTTAGTAGTGAAGTCGATTACAGGTTTTA-AAGTTAAAGGAGTGTAGAGTTTTCAATATAAAGCTGGGGAGAAAAAAAATGTACAAGTCTTCTTTTGGCCATGTG-CGCCATAGATTGCAAATTATTAAGTTGTACTCTTTG-ACTAGAGTCCTAAAAGAGCTGAAATTTTTTTAATGTACTTTGAAAA</genome_strand>
        <mrna_strand>GCGTGAAATGGAGAGAAGGGAGCAAGAACGGAGGAGGAGTCCAAAAGTTGACTTCATATCGGGAGGAACACAGCCTGCACCGATGGTTCCTACACCAAAAATCAATCTGTCGATTCCAG.....................................................................................GGATGGCTCCTGTTGCTGCTGGTGCATTACCGCCCACTGTAGATGTTGTAACTCGGGATGGTAGACAGAACAAAAAGTCGAAATGGGACAAG..........................................................................................GTGGATGGTGATCGGAGAGACCCTGTTTCTGCTGTTGGTGCACATGCAGCACTTCTATCAGCTGCTAATGCTGGTGCTGGTTACACTGCATTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAAGACGTCGGGAGGCAGAAGAGAAGCGACCTAGTGACAAGAAGTTGGATAGAAGATCTTGAAAATCTAATTAGACATGCGACTCCTGAAAGCTATTGACCCTTTCCAACACATCCAGTCATGCACAAGTGTTGGCACAAAGAAAGCAGTTAGAGCAACGGGTGCCTCATTTAGAAAGACAAATTACTGTCAACTCTGAATATTCCCATATACTGTATATACCCAGTTTTTGTTTAGTAGTGAAGTCGATTCCAGGTTTCACAAGTTCAAGGAGTGTCGAGTTTTCCATATAAAGCTGGGGAGAAAACAAATGCCCCAGTCTTCTTTTGCCCATGTGCCCCCATCGATTCCCAATTATTAAGTTGTACTCTTTGCCCTAGAGTCCTAAAAGAGCTG-AATTTTTTTAATGTAC-TTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425105" ref_strand="+" ref_description="SGN-E425105 [STM-44-H1]">
      <seq>cacctttttttttttccggaaaagcctcttttttgcatgaaatttatggagatctacagactgatgttggaactactttttttttttgcagggtattggtatcctgtttagtggactttttgggactgctactgggtgtacagtttctatgttagtaactcaagtcctatattacttctatgcaatgtgatttttatctctcggtttaacacatcttttatggttaacagtgagaatgtgggacttcttggaagcactcgtgtgggtagccgcagagttatccaaatttctgctggctttatgatcttcttctcaattttaggttggtgatcttctgtggactcaaccagacctgaaagaatctttcagctagtctgaacttgctcataatccattttttgacatttgtaggcaaatttggagcattatttgcatcaattcctttcccaatattcgctgctgtatattgtgtcttgttcggncttgttggtgagaatccttagcaactccactccttacaatatctttctgcagatctctttatctattttccccatctgacaaacatttcttttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51078" stop="52261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51370" g_stop="51961" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E425105" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51370" e_stop="51961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGGTTTTTGATGACGGAAGAGCCTCATATTTGCATGAAATCTATGGAGATCTACAGACTGATGTTGGAACTACTTTGTATTTTTTTTTGCAGGGTATTGGTATCCTGTTTAGTGGACTTTTTGGGACTGCTACTGGGTGTACAGTTTCTATGTTAGTAGCTCAAGTCCTATGTTACTTGTATGCAATGTGA--TTTATCTATCGGTTTAACATATCTTTTGTGGTTGACAGTGAGAATGTGGGACTTCTTGGAAGCACTCGTGTGGGTAGCCGCAGAGTTATCCAAATTTCTGCTGGCTTTATGATCTTCTTCTCTATTTTAGGTTGGTCATCTTCTGTGGACTCAACCAAACCTCTGAGAATTTTTCAGCTAGTGTGAACTTGGTTCCTCATAATCCATTTTTTCCCCCGACATTTGTAGGCAAATTTGGAGCATTATTTGCATCAATTCCTTTCCCAATATTCGCTGCTGTATATTGTGTCTTGTTCGGTCTTGTCGGTGAGCATCCTTAGCAACTCCACTCCTCACAACATCTTTCTGGAGATCTCTTTATC-AATTTCCCCATCTGACAAACATTTCTTTTATTTC</genome_strand>
        <mrna_strand>CACCTTTTTTTTT--TTCCGGAAAAGCCTCTTTTTTGCATGAAATTTATGGAGATCTACAGACTGATGTTGGAACTAC--T-T-TTTTTTTTTGCAGGGTATTGGTATCCTGTTTAGTGGACTTTTTGGGACTGCTACTGGGTGTACAGTTTCTATGTTAGTAACTCAAGTCCTATATTACTTCTATGCAATGTGATTTTTATCTCTCGGTTTAACACATCTTTTATGGTTAACAGTGAGAATGTGGGACTTCTTGGAAGCACTCGTGTGGGTAGCCGCAGAGTTATCCAAATTTCTGCTGGCTTTATGATCTTCTTCTCAATTTTAGGTTGGTGATCTTCTGTGGACTCAACCAGACCTGAAAGAATCTTTCAGCTAGTCTGAACTT-G---CTCATAATCCATTTTTT-----GACATTTGTAGGCAAATTTGGAGCATTATTTGCATCAATTCCTTTCCCAATATTCGCTGCTGTATATTGTGTCTTGTTCGGNCTTGTTGGTGAGAATCCTTAGCAACTCCACTCCTTACAATATCTTTCTGCAGATCTCTTTATCTATTTTCCCCATCTGACAAACATTTCTTTTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453875" ref_strand="+" ref_description="SGN-E453875 [cSTS-21-M22]">
      <seq>aaataggccttgaccatttttgactacaaataaatgaataaataatattcatgtcaacctgatgtctaccttcctagaatttcatcacaactgcctacatagagttttttctttgattcgaatatatcattagggatcaaccctgagatcaaactcttctcatatttcactttcccctccttccttctggggtccagatatatcgctaacatgatcatgaaggaggaaagaagcggttgagaattaaaagggagggtgtaaaattcttcatttctgctatcacccttaaatgtcctgaacttcacccaccatggcattcccctatctttggcactgtccttgtagtccagtgtgttgtcgagaaacacagcaaccatcatagccacagttggggaagacagaaagatggtgttgagaaaatcattgaactgcatatttccaagagaaccagatcaattactaatgacttaatatacaatttagaagtttggaaacttaatcataatatattttaactcaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="52942" stop="51823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52642" g_stop="52123" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E453875" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52642" e_stop="52123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGGCCTTGA-CATTTTTGACTACAAATAAATGAAAAAATAATATTCATGTCAA-CTGATGTCTA-CTTCCTAGGAATTTCATCACAACTGCCTACATAGAGTTTGTTCTTTGATTCAAATATATCATAAGGGATCAACCCTGAGATCAAACTCTTCTCAAATTTCACTTTCACATCCTTCCTCTTCTGGTCCAGATATATCGCAAACATGATCATGAAGGAGGAAAGAAGCGGTTGAG-ATTGAAAGGGAGGGTGTAAAACTCTTCATTTCTACTATCACCCTTAAATGTCCTGAACTTCACCCACCATGGCATTCCCCTATCTTTGGCACTGTCCTTGTAGTCCAGTGTGTTGTCGAGAAACACAGCAACCATCATAGCCACAGTTGGGGAAGACGAAAAGATGGTGTTGAGAAAATCATTGAACTGCATATTTCCAAAACAGAACCAGATCAGTTACTAATGACTCCATATAAAATTT-GAAGTTCGGAAACTTAATCATAATATA-TTTGACTCACCCA</genome_strand>
        <mrna_strand>AAATAGGCCTTGACCATTTTTGACTACAAATAAATGAATAAATAATATTCATGTCAACCTGATGTCTACCTTCCTA-GAATTTCATCACAACTGCCTACATAGAGTTTTTTCTTTGATTCGAATATATCATTAGGGATCAACCCTGAGATCAAACTCTTCTCATATTTCACTTTCCCCTCCTTCCTTCTGGGGTCCAGATATATCGCTAACATGATCATGAAGGAGGAAAGAAGCGGTTGAGAATTAAAAGGGAGGGTGTAAAATTCTTCATTTCTGCTATCACCCTTAAATGTCCTGAACTTCACCCACCATGGCATTCCCCTATCTTTGGCACTGTCCTTGTAGTCCAGTGTGTTGTCGAGAAACACAGCAACCATCATAGCCACAGTTGGGGAAGACAGAAAGATGGTGTTGAGAAAATCATTGAACTGCATATTTCC--AAGAGAACCAGATCAATTACTAATGACTTAATATACAATTTAGAAGTTTGGAAACTTAATCATAATATATTTTAACTCACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425104" ref_strand="+" ref_description="SGN-E425104 [STM-44-H1]">
      <seq>tttttggtgaataaaaagcacatttatcattgcaacaattccttcttactttttctgttatcgcaaaaattaggaagggaaaaggtactcacagagaagagcagagtaggagtaagaaaattttctcattatgccaaaataggccttgacatttttgactacaaataaatgaataaataatattcatgtcaactgatgtctacttcctagaatttcatcacaactgcctacatagagttttttctttgattcgaatatatcattagggatcaaccctgagatcaaactcttctcatatttcactttcccctccttccttctggggtccagatatatcgctaacatgatcatgaaggaggaaagaagcggttgagattaaaagggagggtgtaaaattcttcatttctgctatcacccttaaatgtcctgaacttcacccaccatggcattcccctatctttggcactgtccttgtagtccagtgtgttgtcgagaaacacagcaaccatcatagccacagttggggaagacagaaagatggtgttgagaaaatcattgaactgcatatttccaagagaaccagatcaattactaatgacttaatatacaattagaagtttggaaacttaatcataatatattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="53072" stop="51829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52772" g_stop="52129" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E425104" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52772" e_stop="52129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGTGAATAAAAAAGCACATTACTCATAGCA---ATTCCTTCTTACTTTTTCTGTTATCGCGAAAATTAGGAAGGAATAAGGTA---ACAGAG--GAGCAGAGTAAGGAATAAGAAAATCTTCTCATTATGCCAAAATAGGCCTTGACATTTTTGACTACAAATAAATGAAAAAATAATATTCATGTCAACTGATGTCTACTTCCTAGGAATTTCATCACAACTGCCTACATAGAGTTTGTTCTTTGATTCAAATATATCATAAGGGATCAACCCTGAGATCAAACTCTTCTCAAATTTCACTTTCACATCCTTCCTCTTCTGGTCCAGATATATCGCAAACATGATCATGAAGGAGGAAAGAAGCGGTTGAGATTGAAAGGGAGGGTGTAAAACTCTTCATTTCTACTATCACCCTTAAATGTCCTGAACTTCACCCACCATGGCATTCCCCTATCTTTGGCACTGTCCTTGTAGTCCAGTGTGTTGTCGAGAAACACAGCAACCATCATAGCCACAGTTGGGGAAGACGAAAAGATGGTGTTGAGAAAATCATTGAACTGCATATTTCCAAAACAGAACCAGATCAGTTACTAATGACTCCATATAAAATTTGAAGTTCGGAAACTTAATCATAATATATTTGACT</genome_strand>
        <mrna_strand>TTTTTGGTGAAT-AAAAAGCACATTTATCATTGCAACAATTCCTTCTTACTTTTTCTGTTATCGCAAAAATTAGGAAGGGAAAAGGTACTCACAGAGAAGAGCAGAGT-AGGAGTAAGAAAATTTTCTCATTATGCCAAAATAGGCCTTGACATTTTTGACTACAAATAAATGAATAAATAATATTCATGTCAACTGATGTCTACTTCCTA-GAATTTCATCACAACTGCCTACATAGAGTTTTTTCTTTGATTCGAATATATCATTAGGGATCAACCCTGAGATCAAACTCTTCTCATATTTCACTTTCCCCTCCTTCCTTCTGGGGTCCAGATATATCGCTAACATGATCATGAAGGAGGAAAGAAGCGGTTGAGATTAAAAGGGAGGGTGTAAAATTCTTCATTTCTGCTATCACCCTTAAATGTCCTGAACTTCACCCACCATGGCATTCCCCTATCTTTGGCACTGTCCTTGTAGTCCAGTGTGTTGTCGAGAAACACAGCAACCATCATAGCCACAGTTGGGGAAGACAGAAAGATGGTGTTGAGAAAATCATTGAACTGCATATTTCC--AAGAGAACCAGATCAATTACTAATGACTTAATATACAATTAGAAGTTTGGAAACTTAATCATAATATATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349838" ref_strand="+" ref_description="SGN-E349838 [cTOS-3-K8]">
      <seq>gctatgatggttgctgtgtttctcgacaacacactggactacaaggacagtgccaaagataggggaatgccatggtgggtgaagttcaggacatttaagggtgatagtagaaatgaagagttttacaccctccctttcaatctcaaccgcttctttcctccttcatgatcatgtttgcgatatatctggaccagaagaggaaggatgtgaaagtgaaatttgagaagagtttgatctcagggttgatcccttatgatatatttgaatcaaagaacaaactctatgtaggcagttgtgatgaaattcctaggaagtagacatcagttgacatgaatattattttttcatttatttgtagtcaaaaatgtcaaggcctattttggcataatgagaagattttcttattccttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51963" stop="52974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52263" g_stop="52674" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="422"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E349838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52263" e_stop="52674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGATGGTTGCTGTGTTTCTCGACAACACACTGGACTACAAGGACAGTGCCAAAGATAGGGGAATGCCATGGTGGGTGAAGTTCAGGACATTTAAGGGTGATAGTAGAAATGAAGAGTTTTACACCCTCCCTTTCAATCTCAACCGCTTCTTTCCTCCTTCATGATCATGTTTGCGATATATCTGGACCAGAAGAGGAAGGATGTGAAAGTGAAATTTGAGAAGAGTTTGATCTCAGGGTTGATCCCTTATGATATATTTGAATCAAAGAACAAACTCTATGTAGGCAGTTGTGATGAAATTCCTAGGAAGTAGACATCAGTTGACATGAATATTATTTTTTCATTTATTTGTAGTCAAAAATGTCAAGGCCTATTTTGGCATAATGAGAAGATTTTCTTATTCCTTAC</genome_strand>
        <mrna_strand>GCTATGATGGTTGCTGTGTTTCTCGACAACACACTGGACTACAAGGACAGTGCCAAAGATAGGGGAATGCCATGGTGGGTGAAGTTCAGGACATTTAAGGGTGATAGTAGAAATGAAGAGTTTTACACCCTCCCTTTCAATCTCAACCGCTTCTTTCCTCCTTCATGATCATGTTTGCGATATATCTGGACCAGAAGAGGAAGGATGTGAAAGTGAAATTTGAGAAGAGTTTGATCTCAGGGTTGATCCCTTATGATATATTTGAATCAAAGAACAAACTCTATGTAGGCAGTTGTGATGAAATTCCTAGGAAGTAGACATCAGTTGACATGAATATTATTTTTTCATTTATTTGTAGTCAAAAATGTCAAGGCCTATTTTGGCATAATGAGAAGATTTTCTTATTCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355213" ref_strand="+" ref_description="SGN-E355213 [cTOS-18-A13]">
      <seq>gctatgatggttgctgtgtttctcgacacacactggactacaaggacagtgccaaagataggggaatgccatggtgggtgaagttcaggacatttaagggtgatagtagaaatgaagagttttacaccctccctttcaatctcaaccgcttctttcctccttcatgatcatgtttgcgatatatctggaccagaagaggaaggatgtgaaagtgaaatttgagaagagtttgatctcagggttgatcccttatgatatatttgaatcaaagaacaaactctatgtangcagttgtgatgaaattcctangaagtagacatcagttgacatgaatattattttttcatttatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="51963" stop="52917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52263" g_stop="52618" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E355213" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52263" e_stop="52618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGATGGTTGCTGTGTTTCTCGACAACACACTGGACTACAAGGACAGTGCCAAAGATAGGGGAATGCCATGGTGGGTGAAGTTCAGGACATTTAAGGGTGATAGTAGAAATGAAGAGTTTTACACCCTCCCTTTCAATCTCAACCGCTTCTTTCCTCCTTCATGATCATGTTTGCGATATATCTGGACCAGAAGAGGAAGGATGTGAAAGTGAAATTTGAGAAGAGTTTGATCTCAGGGTTGATCCCTTATGATATATTTGAATCAAAGAACAAACTCTATGTAGGCAGTTGTGATGAAATTCCTAGGAAGTAGACATCAGTTGACATGAATATTATTTTTTCATTTATTTGT</genome_strand>
        <mrna_strand>GCTATGATGGTTGCTGTGTTTCTCGAC-ACACACTGGACTACAAGGACAGTGCCAAAGATAGGGGAATGCCATGGTGGGTGAAGTTCAGGACATTTAAGGGTGATAGTAGAAATGAAGAGTTTTACACCCTCCCTTTCAATCTCAACCGCTTCTTTCCTCCTTCATGATCATGTTTGCGATATATCTGGACCAGAAGAGGAAGGATGTGAAAGTGAAATTTGAGAAGAGTTTGATCTCAGGGTTGATCCCTTATGATATATTTGAATCAAAGAACAAACTCTATGTANGCAGTTGTGATGAAATTCCTANGAAGTAGACATCAGTTGACATGAATATTATTTTTTCATTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="59130" stop="57723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58830" g_stop="58023" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58830" e_stop="58023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="59789" stop="58541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59489" g_stop="58841" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59489" e_stop="58841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="59788" stop="58804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59488" g_stop="59104" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59488" e_stop="59104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541757" ref_strand="+" ref_description="SGN-E541757 [TUS-62-L10]">
      <seq>gaaaagccatgttatgtttgtccaaaagggtgactctggttttcaaaatggtattttaaatttagtagtaattaacaatcagtattgactttcattggtctgattctatacttcttttctatttttatatgttgaggaattttcatggaaaatactaatgaattcaactctaacatcatcattgtttgtccctttccaccatttctcttgattgaccctaaagataacaattgcttgaatttttaattcaattgtattttttaaaatcattttatgtgtaatgtggtttataccttagtgtttactggaacaaacatactgtattctaacatgtacacaaccatgatgagaaaaatcaatttccttttccctctcttagtttcaatatggcatcatttgctgatattatcagccactgcagaagtcaatctcaaaactgatgaagcttctctacttgctttgaaatcctatgttacttccgatacttacaatatcttgtcaagcaactggacctcaactacttctgtttgcaattggattggagtcacctgcggctctcgccatcaaagagttataaccttggatatttctgatatgggattagtaggcaccatccctcctcacttgggaaatctgtcctttttggtttctctcgatatcagtagcaacagcttccaaggaattttgccacgagagttggctaatttgcatagattggagtttataaatgtcacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66928" stop="65590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66628" g_stop="65890" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E541757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66628" e_stop="65890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACCTGCGGCTCTCGCCATCAAAGAGTTATAACCTTGGATATTTCTGATATGGGATTAGTAGGCACCATCCCTCCTCACTTGGGAAATCTGTCCTTTTTGGTTTCTCTCGATATCAGTAGCAACAGCTTCCAAGGAATTTTGCCACGAGAGTTGGCTAATTTGCATAGATTGGAGTTTATAAATGTCACTTCTA</genome_strand>
        <mrna_strand>GAAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACCTGCGGCTCTCGCCATCAAAGAGTTATAACCTTGGATATTTCTGATATGGGATTAGTAGGCACCATCCCTCCTCACTTGGGAAATCTGTCCTTTTTGGTTTCTCTCGATATCAGTAGCAACAGCTTCCAAGGAATTTTGCCACGAGAGTTGGCTAATTTGCATAGATTGGAGTTTATAAATGTCACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541764" ref_strand="+" ref_description="SGN-E541764 [TUS-62-L14]">
      <seq>gaaaagccatgttatgtttgtccaaaagggtgactctggttttcaaaatggtattttaaatttagtagtaattaacaatcagtattgactttcattggtctgattctatacttcttttctatttttatatgttgaggaattttcatggaaaatactaatgaattcaactctaacatcatcattgtttgtccctttccaccatttctcttgattgaccctaaagataacaattgcttgaatttttaattcaattgtattttttaaaatcattttatgtgtaatgtggtttataccttagtgtttactggaacaaacatactgtattctaacatgtacacaaccatgatgagaaaaatcaatttccttttccctctcttagtttcaatatggcatcatttgctgatattatcagccactgcagaagtcaatctcaaaactgatgaagcttctctacttgctttgaaatcctatgttacttccgatacttacaatatcttgtcaagcaactggacctcaactacttctgtttgcaattggattggagtcacctgcggctctcgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66928" stop="65764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66628" g_stop="66064" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E541764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66628" e_stop="66064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACCTGCGGCTCTCGCCATC</genome_strand>
        <mrna_strand>GAAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACCTGCGGCTCTCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299902" ref_strand="+" ref_description="SGN-E299902 [cLEW-1-H18]">
      <seq>aaaagccatgttatgtttgtccaaaagggtgactctggttttcaaaatggtattttaaatttagtagtaattaacaatcagtattgactttcattggtctgattctatacttcttttctatttttatatgttgaggaattttcatggaaaatactaatgaattcaactctaacatcatcattgtttgtccctttccaccatttctcttgattgaccctaaagataacaattgcttgaatttttaattcaattgtattttttaaaatcattttatgtgtaatgtggtttataccttagtgtttactggaacaaacatactgtattctaacatgtacacaaccatgatgagaaaaatcaatttccttttccctctcttagtttcaatatggcatcatttgctgatattatcagccactgcagaagtcaatctcaaaactgatgaagcttctctacttgctttgaaatcctatgttacttccgatacttacaatatcttgtcaagcaactggacctcaactacttctgtttgcaattggattggagtcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="66927" stop="65780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66627" g_stop="66080" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E299902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66627" e_stop="66080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACC</genome_strand>
        <mrna_strand>AAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368573" ref_strand="+" ref_description="SGN-E368573 [TUS-23-F10](-)">
      <seq>gctcagcacctgtgattcattgtgatctgaagcctagcaatgtcttgctagatgaaaacatggtagctcatttaagtgactttggcatttctaaactactcagtgaagatgagagtgatttacacactaaaaccttagcaacattcggctacattgcaccagagtatggaagggaaggattgctgtcgctaaaatgtgatgtttatagttacgggatcatgctgatggaaacattcacgaggagaaggccgaacgatgaaatatttgatgaagatcttagtttaaagaaatgggtgagtgattcactcccagaggcaacaatcaaagttgtagatgcgaattttctaacaccagaagatgagaaattcatggaaaagatagattgtgtagcatccatcatgaaagtggcactggattgctctgctgaatctcctgaagaaaggatctacatgaaagatgttgtaggaacactacaaaagatcaagattcaacttctttcatgttccgcaagtgcataaagacatttgactcatgtcacttgagggtatagaaagtgtttggttaactttttagctgcatacctagactgttttcctttctagctgcataagatattcctattcttattgagatcctttgtgaattttggcctgtttggttccaaattgctttttcctaattctcatgaaataaattttataatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="68542" stop="67141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68242" g_stop="68081" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68080" i_stop="67987" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67986" g_stop="67438" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="711" r_length="549" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67437" i_stop="67377" i_length="61">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.825" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67376" g_stop="67366" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="722" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E368573" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68242" e_stop="68081"/>
          <exon e_start="67986" e_stop="67438"/>
          <exon e_start="67376" e_stop="67366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCACCTGTGATTCATTGTGATCTGAAGCCTAGCAATGTCTTGCTAGATGAAAACATGGTAGCTCATTTAAGTGACTTTGGCATTTCTAAACTACTCAGTGAAGATGAGAGTGATTTACACACTAAAACCTTAGCAACATTCGGCTACATTGCACCAGGTAAATAAAATCTATTATACTTCCTGTTTCAGTATCCTATCTTTGTTTTCCTTTTCTCGGATTAAATGATAATCCGTAAGTGTTTTTATTGTAGAGTATGGAAGGGAAGGATTGCTGTCGCTAAAATGTGATGTTTATAGTTACGGGATCATGCTGATGGAAACATTCACGAGGAGAAGGCCGAACGATGAAATATTTGATGAAGATCTTAGTTTAAAGAAATGGGTGAGTGATTCACTCCCAGAGGCAACAATCAAAGTTGTAGATGCGAATTTTCTAACACCAGAAGATGAGAAATTCATGGAAAAGATAGATTGTGTAGCATCCATCATGAAAGTGGCACTGGATTGCTCTGCTGAATCTCCTGAAGAAAGGATCTACATGAAAGATGTTGTAGGAACACTACAAAAGATCAAGATTCAACTTCTTTCATGTTCCGCAAGTGCATAAAGACATTTGACTCATGTCACTTGAGGGTATAGAAAGTGTTTGGTTAACTTTTTAGCTGCATACCTAGACTGTTTTCCTTTCTAGCTGCATAAGATATTCCTATTCTTATTGAGATCCTTTGTGAATTTTGGCCTGTTTGGTTCCAAATTGCTTTTTCCTAATTCTCATGAAATAAATTTTATAATCACAATTAGTGTTTGGCTCAAGTAACTAACAATCATTTAGATAATTCAATCAATTATGTAACTAATCAGGAAGAATCAAA</genome_strand>
        <mrna_strand>GCTCAGCACCTGTGATTCATTGTGATCTGAAGCCTAGCAATGTCTTGCTAGATGAAAACATGGTAGCTCATTTAAGTGACTTTGGCATTTCTAAACTACTCAGTGAAGATGAGAGTGATTTACACACTAAAACCTTAGCAACATTCGGCTACATTGCACCAG..............................................................................................AGTATGGAAGGGAAGGATTGCTGTCGCTAAAATGTGATGTTTATAGTTACGGGATCATGCTGATGGAAACATTCACGAGGAGAAGGCCGAACGATGAAATATTTGATGAAGATCTTAGTTTAAAGAAATGGGTGAGTGATTCACTCCCAGAGGCAACAATCAAAGTTGTAGATGCGAATTTTCTAACACCAGAAGATGAGAAATTCATGGAAAAGATAGATTGTGTAGCATCCATCATGAAAGTGGCACTGGATTGCTCTGCTGAATCTCCTGAAGAAAGGATCTACATGAAAGATGTTGTAGGAACACTACAAAAGATCAAGATTCAACTTCTTTCATGTTCCGCAAGTGCATAAAGACATTTGACTCATGTCACTTGAGGGTATAGAAAGTGTTTGGTTAACTTTTTAGCTGCATACCTAGACTGTTTTCCTTTCTAGCTGCATAAGATATTCCTATTCTTATTGAGATCCTTTGTGAATTTTGGCCTGTTTGGTTCCAAATTGCTTTTTCCTAATTCTCATGAAATAAATTTTATAATCAAAAAAA.............................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368574" ref_strand="+" ref_description="SGN-E368574 [TUS-23-F10]">
      <seq>acagcttgcagggtgaaattccttttagtggtcctttcaagaacctttccagcctgtcattcatgttcaatgaagcattgtgtggtgctccaagatttcatgtcccttcgtgccccacttcttcaaaccatagatcaaagaggaagaagttacttctgatagtctttcctctactcggagctgctgtgacaattgtttttgtaacattggcatttgtgtggatgaggtacagaaaagaaggaaatgttccagtccaagctgatttgttagctacaagggaaagaatttcatactatgaaatcatacaagccacaaatgattttagtgagagtaatttcattggttcagggagttttggttctgtttacaaaggaattctcataaatgggactatcattgcagttaaagtgttcaacctacaagttgaaggtgcattcaagagttttgaaacagaatgtgaagttcttcgcaaccttcgccataggaatctcaccaaagtcattagcagttgctccaaccttgatttcaaggctttagtgctcgagtacatgcctaatgggagccttgaaaagtggttgtattcacacaactacttcttagacatccttcaaagactaagcataatgattgatgtggcatgtgcattggaatatctccaccatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69208" stop="67944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68908" g_stop="68244" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E368574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68908" e_stop="68244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGAGTAATTTCATTGGTTCAGGGAGTTTTGGTTCTGTTTACAAAGGAATTCTCATAAATGGGACTATCATTGCAGTTAAAGTGTTCAACCTACAAGTTGAAGGTGCATTCAAGAGTTTTGAAACAGAATGTGAAGTTCTTCGCAACCTTCGCCATAGGAATCTCACCAAAGTCATTAGCAGTTGCTCCAACCTTGATTTCAAGGCTTTAGTGCTCGAGTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCACACAACTACTTCTTAGACATCCTTCAAAGACTAAGCATAATGATTGATGTGGCATGTGCATTGGAATATCTCCACCATGGT</genome_strand>
        <mrna_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGAGTAATTTCATTGGTTCAGGGAGTTTTGGTTCTGTTTACAAAGGAATTCTCATAAATGGGACTATCATTGCAGTTAAAGTGTTCAACCTACAAGTTGAAGGTGCATTCAAGAGTTTTGAAACAGAATGTGAAGTTCTTCGCAACCTTCGCCATAGGAATCTCACCAAAGTCATTAGCAGTTGCTCCAACCTTGATTTCAAGGCTTTAGTGCTCGAGTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCACACAACTACTTCTTAGACATCCTTCAAAGACTAAGCATAATGATTGATGTGGCATGTGCATTGGAATATCTCCACCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243549" ref_strand="+" ref_description="SGN-E243549 [cLED-34-E19]">
      <seq>acagcttgcagggtgaaattccttttagtggtcctttcaagaacctttccagcctgtcattcatgttcaatgaagcattgtgtggtgctccaagatttcatgtcccttcgtgccccacttcttcaaaccatagatcaaagaggaagaagttacttctgatagtctttcctctactcggagctgctgtgacaattgtttttgtaacattggcatttgtgtggatgaggtacagaaaagaaggaaatgttccagtccaagctgatttgttagctacaagggaaagaatttcatactatgaaatcatacaagccacaaatgattttagtgagagtaatttcattggttcagggagttttggttctgtttacaaaggaattctcataaatgggactatcattgcagttaaagtgttcaacctacaagttgaaggtgcattcaagagttttgaaacagaatgtgaagttcttcgcaaccttcgccataggaatctcaccaaagtcattagcagttgctccaaccttgatttcaaggctttagtgctcgagtacatgcctaatgggagccttgaaaagtggttgtattcacacaactacttcttagacatccttcaaagactaagcataatgattgatgtggcatgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69208" stop="67965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68908" g_stop="68265" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E243549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68908" e_stop="68265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGAGTAATTTCATTGGTTCAGGGAGTTTTGGTTCTGTTTACAAAGGAATTCTCATAAATGGGACTATCATTGCAGTTAAAGTGTTCAACCTACAAGTTGAAGGTGCATTCAAGAGTTTTGAAACAGAATGTGAAGTTCTTCGCAACCTTCGCCATAGGAATCTCACCAAAGTCATTAGCAGTTGCTCCAACCTTGATTTCAAGGCTTTAGTGCTCGAGTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCACACAACTACTTCTTAGACATCCTTCAAAGACTAAGCATAATGATTGATGTGGCATGTGCA</genome_strand>
        <mrna_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGAGTAATTTCATTGGTTCAGGGAGTTTTGGTTCTGTTTACAAAGGAATTCTCATAAATGGGACTATCATTGCAGTTAAAGTGTTCAACCTACAAGTTGAAGGTGCATTCAAGAGTTTTGAAACAGAATGTGAAGTTCTTCGCAACCTTCGCCATAGGAATCTCACCAAAGTCATTAGCAGTTGCTCCAACCTTGATTTCAAGGCTTTAGTGCTCGAGTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCACACAACTACTTCTTAGACATCCTTCAAAGACTAAGCATAATGATTGATGTGGCATGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241271" ref_strand="+" ref_description="SGN-E241271 [cLED-26-F13]">
      <seq>acagcttgcagggtgaaattccttttagtggtcctttcaagaacctttccagcctgtcattcatgttcaatgaagcattgtgtggtgctccaagatttcatgtcccttcgtgccccacttcttcaaaccatagatcaaagaggaagaagttacttctgatagtctttcctctactcggagctgctgtgacaattgtttttgtaacattggcatttgtgtggatgaggtacagaaaagaaggaaatgttccagtccaagctgatttgttagctacaagggaaagaatttcatactatgaaatcatacaagccacaaatgattttagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69208" stop="68279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68908" g_stop="68579" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E241271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68908" e_stop="68579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGA</genome_strand>
        <mrna_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241266" ref_strand="+" ref_description="SGN-E241266 [cLED-26-D13]">
      <seq>acagcttgcagggtgaaattccttttagtggtcctttcaagaacctttccagcctgtcattcatgttcaatgaagcattgtgtggtgctccaagatttcatgtcccttcgtgccccacttcttcaaaccatagatcaaagaggaagaagttacttctgatagtctttcctctactcggagctgctgtgacaattgtttttgtaacattggcatttgtgtggatgaggtacagaaaagaaggaaatgttccagtccaagctgatttgttagctacaagggaaagaatttcatactatgaaatcatacaagccacaaatgattttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="69208" stop="68283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68908" g_stop="68583" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E241266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68908" e_stop="68583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGT</genome_strand>
        <mrna_strand>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404877" ref_strand="+" ref_description="SGN-E404877 [PPC-15-J23]">
      <seq>tcacaacagttgctgaatccttcatccattctgtattctcttccctttaattgcataaatatcaaatgactcattctctagctttaacttctacagccctaattcgatacggcattggtccaaaaactggggctttacctaaggcaaataagccatcgagatcatcttcaagattattcagaattcaagctgtgcaagataatggagaaaggcctcggaggctgattgatattattcgcattgtgccagagatttcgagaaattatttcaaaactccttcacggaaggcactttttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaagagtgaatgatgtgattgctgccgntgtgtgtgtcttaattactgagtatgtgacgcgattctactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75420" stop="76454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75720" g_stop="76154" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E404877" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75720" e_stop="76154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACA</genome_strand>
        <mrna_strand>TC-ACAACAGTTGCTGAATC--CTTCATCCATTCTGTATTCTCTTCCCTTTAATTGCATAAATATCAAATGACTCATTCTCTAGCTTTAACTTCTACAGCCCTAATTCGATACGGCATTGGTCCAAAAACTGGGGCTTTACCTAAGGCAAATAAGCCATCGAGATCATCTTCAAGATTATTCAGAATTCAAGCTGTGCAAGATAATGGAGAAAGGCCTCGGAGGCTGATTGATATTATTCGCATTGTGCCAGAGATTTCGAGAAATTATTTCAAAACTCCTTCACGGAAGGCACTTTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAAGAGTGAATGATGTGATTGCTGCCGNTGTGTGTGTCTTAATTACTGAGTATGTGACGCGATTCTACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377825" ref_strand="+" ref_description="SGN-E377825 [TUS-21-F19]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctttaattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaggagtgaatgatgtgattgctgctgtagtgtgtgtcttaattactgaatatgtgacgcgattctactacactcgacctaaggtgacttttccgattgctcttttgaacaacttcaagatgggttttacctatggtctgttcattgatgccttcaaacttgccagctgaattgattgccacacttttgtagcagacatctttcatattgagcctctcattaggagattcagctgtgcaattcaatgccaactccaaaatagaggtcagacaactcaactttttatcaaaatcaatctcttcanggttgcataaggtgtcatcaataatatcagctggtgctacaggacatctttcatattgagcctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="79183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76276" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76277" i_stop="78730" i_length="2454">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78731" g_stop="78882" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="704" r_length="152" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E377825" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76276"/>
          <exon e_start="78731" e_stop="78882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAACTTGCCAGCTGAATTGATTGCCACACTTTTGTAGCAGTAAGTAATTTTTGCGTGCAGTTTCCCCCTTTTGGGCTGTATTTGTGGATATACAAGTCATAGAAATAGCGAAGTTCTTATTTCAACTGTGTTGATGTTGTCTCATCTTTCAGAAAATTGATGTGAGAGTTACTCATTTCTTGTGTCTTGAAATCTTATAATCACCTCGGTTTGCTTACTGTGCTTTGGGAGTTGGTGGAAGTTAAAGCATTTTACTCAGTACAAGTTCAAGAAGTAAAAAGTTCGTTTTTTACCCCTACCTTGAGCTACCACTTGCGAGAGTGCTTACCATTTGAGCAACCACTCTTTCCAAAAAGTAAAAAGTGATGCCAAAATGAAGGTAAATCTTCTTTGAGATATACAAGATGAGCTCTAAAGAGCATCTCTTTTATAGAGAATTGGGTAAAAATTGAAGCAGTAGAATCTTGGAGAGCCTTTAATAGGATTTAATTTTTCTGTCCCAAGAAATGTGAAGAAGGTTAAAATGCCTTCACTACCTGCCACTAATGAAGTGAATTCTAAAATGCCCTGATGGGTTATTTGTAATCCAATTACTATGAAAATAACTATAGAATAACATACTTTTCTTTTTGACAATCAGCATCCATTAAGAAAAAAGATTTTAGGAATAAAGTCACAGAGCCGGGTCTTGAACTTTGATGTCTGAATATCATTTGACTAAAGTTTTAAGTATACTGGATCGTATATAGGGGGGTCCGGCAAGATTTTGCCAAACTTGTGATCTTTCTCAGAGTGTACTGTGTTGTTCAAAGAAATTTTTACAATAAATGGTGAAGATGATCATTCCTGAAGTCAATCAGACTATTTGAATATGGTTGTTTTCTTCTATGGTTGTTTCTTGAGACATCTATGAATCTTCACCGTATGAAAAGTAGTTTTCTTCTATGGTTGTTTCTTGAGACATCTATGAATATTGCAGCCTTGGAGTTCCGAATAACTGGACTAAAGAACTTTTCAATAAGTTGATGATAAACTTGCATCTAGAAGATCGTTGAGATTACAAAGTCTTAATGGTACACTTAAAGTTAAACTATTTGAATCCAAGTAAAACTTTTCTCAGAGAAAATTCAATTTCCAAGCATCCGGGGATTGGACCAAGTATTTGATCTCTTCTCAATACAGTTCACCCTGATTTTGCTACAGACAGAAACTATTAGATGGAGAGTGAAGCTTTGTATTAGTTATGGGATTAATGGAAAGATATCCCTGGGTTTTAGTCATGAGATAAGTGCAGATATTACAAATATACTGGACCACAAAGAGAGTAAAGCTTTTGTATTTGTAGTGTGTGATTATGGTAACTGTCATGCTGTCTTTGTCAGTGAATGGGAACTATTGAAAATTGAAATAAGAAACTTTCCAGCTGTTAAGGAGTCTATATTGGATGAATTAAGAAAGTAAGAAACCTAAGCCAAAGCCAAATGATGTGGAAATGAAGTTGAAATTGTTTCTGAATTCTTATGTATGTTCATTGACTGCTATTTGGTGTTTCAGGCAATGTTGTATTTTTGCCTGAAGTCATTGGATTTGAGTTGCAAAGTTTTATTGATTGAGCGGGTGATCTAAGTTGTTGGAAAAGGACTTTTCGGTCTTTTAGTTTTTTGTCATTCGCCAATTAGAACCCACATTCAACATTTGGGGTTTAAGTCTCAATCCCAATTGTGACCTGTGAGAGTGAAAAATATGGATTGCATTTGTGCTTCAATCTACAGACGAGCTGTTCATTGTAAAAACTTTGTTCGACTTGGTAACTGAAAGAGCCTAAGCTTGTGGTTCAACATTTTACTGCTCTTCATAGATCATTGAAGCTTCTATCTCAATAATAATTCTTGATCACCAATATTTTACTTTTGTACACATCTTATATATCAAAAGTTTTACATAAACATACTCAAACTTGAAACATGCACAAGAGGACGGCACAAGAAATAGGAGAAGTACGAATCTCAGACCAAATGTTTGTTGGCAATTCAATTGATGTCACCCAAATTTGCCAACAACAGGCATAAAAGGTGGCAATACCTGTACAAAAATTTGAATGGCGTCAAACTTGAGTTGGCAGCCATTGCAGATAAAAACTCATAGCACACACAAAAATACACTAATTGTGATGGATACATGAGTTGTTTGCTTCACTTTTCAACATTCATCATAATTTCCAAATGTTGTTCCTCATGAATTCTTGATTTATTTTACTCGCTAATGAAGTTTCCTTGATTTAATTATTATTATTATTTTTATTATTAGTATTTGCATGGAAAAACCCATTTCTACACGGTATAGACAAGACAGTAATCTTTTTATTTCCGAAATGGGAAATAATTTCTCTATATGACATTAGAATGTTTTAAAAAGTTGGATACCTACCGTCGCATAAACCTTATTACATCATCTGCATAGAAATTCATCCTTGATCTTCTTGATATTTGCCAGGACATCTTTCATATTGAGCCTCTCATTAGGAGATTCAGCTGTGCAATTCAATGCCAACTCCAAAATAGAGGTCAGACAACTCAACTTTTTATCAAAATCAATCTCTTCA-GGTTGCAATAAGGTGTCATCAATAATATCAGCTGGTGCTACAG</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAACTTGCCAGCTGAATTGATTGCCACACTTTTGTAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCTTTCATATTGAGCCTCTCATTAGGAGATTCAGCTGTGCAATTCAATGCCAACTCCAAAATAGAGGTCAGACAACTCAACTTTTTATCAAAATCAATCTCTTCANGGTTGC-ATAAGGTGTCATCAATAATATCAGCTGGTGCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236389" ref_strand="+" ref_description="SGN-E236389 [cLED-13-I2]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctttaattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaggagtgaatgatgtgattgctgctgtagtgtgtgtcttaattactgaatatgtgacgcgattctactacactcgacctaaggtgacttttccgattgctcttttgaacaacttcaagatgggttttacctatggtctgttcattgatgccttcaaacttgccagctgaattgattgccacacttttgtagcagacatctttcatattgagcctctcattaggagattcagctgtgcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="79079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76276" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76277" i_stop="78730" i_length="2454">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78731" g_stop="78779" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="601" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E236389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76276"/>
          <exon e_start="78731" e_stop="78779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAACTTGCCAGCTGAATTGATTGCCACACTTTTGTAGCAGTAAGTAATTTTTGCGTGCAGTTTCCCCCTTTTGGGCTGTATTTGTGGATATACAAGTCATAGAAATAGCGAAGTTCTTATTTCAACTGTGTTGATGTTGTCTCATCTTTCAGAAAATTGATGTGAGAGTTACTCATTTCTTGTGTCTTGAAATCTTATAATCACCTCGGTTTGCTTACTGTGCTTTGGGAGTTGGTGGAAGTTAAAGCATTTTACTCAGTACAAGTTCAAGAAGTAAAAAGTTCGTTTTTTACCCCTACCTTGAGCTACCACTTGCGAGAGTGCTTACCATTTGAGCAACCACTCTTTCCAAAAAGTAAAAAGTGATGCCAAAATGAAGGTAAATCTTCTTTGAGATATACAAGATGAGCTCTAAAGAGCATCTCTTTTATAGAGAATTGGGTAAAAATTGAAGCAGTAGAATCTTGGAGAGCCTTTAATAGGATTTAATTTTTCTGTCCCAAGAAATGTGAAGAAGGTTAAAATGCCTTCACTACCTGCCACTAATGAAGTGAATTCTAAAATGCCCTGATGGGTTATTTGTAATCCAATTACTATGAAAATAACTATAGAATAACATACTTTTCTTTTTGACAATCAGCATCCATTAAGAAAAAAGATTTTAGGAATAAAGTCACAGAGCCGGGTCTTGAACTTTGATGTCTGAATATCATTTGACTAAAGTTTTAAGTATACTGGATCGTATATAGGGGGGTCCGGCAAGATTTTGCCAAACTTGTGATCTTTCTCAGAGTGTACTGTGTTGTTCAAAGAAATTTTTACAATAAATGGTGAAGATGATCATTCCTGAAGTCAATCAGACTATTTGAATATGGTTGTTTTCTTCTATGGTTGTTTCTTGAGACATCTATGAATCTTCACCGTATGAAAAGTAGTTTTCTTCTATGGTTGTTTCTTGAGACATCTATGAATATTGCAGCCTTGGAGTTCCGAATAACTGGACTAAAGAACTTTTCAATAAGTTGATGATAAACTTGCATCTAGAAGATCGTTGAGATTACAAAGTCTTAATGGTACACTTAAAGTTAAACTATTTGAATCCAAGTAAAACTTTTCTCAGAGAAAATTCAATTTCCAAGCATCCGGGGATTGGACCAAGTATTTGATCTCTTCTCAATACAGTTCACCCTGATTTTGCTACAGACAGAAACTATTAGATGGAGAGTGAAGCTTTGTATTAGTTATGGGATTAATGGAAAGATATCCCTGGGTTTTAGTCATGAGATAAGTGCAGATATTACAAATATACTGGACCACAAAGAGAGTAAAGCTTTTGTATTTGTAGTGTGTGATTATGGTAACTGTCATGCTGTCTTTGTCAGTGAATGGGAACTATTGAAAATTGAAATAAGAAACTTTCCAGCTGTTAAGGAGTCTATATTGGATGAATTAAGAAAGTAAGAAACCTAAGCCAAAGCCAAATGATGTGGAAATGAAGTTGAAATTGTTTCTGAATTCTTATGTATGTTCATTGACTGCTATTTGGTGTTTCAGGCAATGTTGTATTTTTGCCTGAAGTCATTGGATTTGAGTTGCAAAGTTTTATTGATTGAGCGGGTGATCTAAGTTGTTGGAAAAGGACTTTTCGGTCTTTTAGTTTTTTGTCATTCGCCAATTAGAACCCACATTCAACATTTGGGGTTTAAGTCTCAATCCCAATTGTGACCTGTGAGAGTGAAAAATATGGATTGCATTTGTGCTTCAATCTACAGACGAGCTGTTCATTGTAAAAACTTTGTTCGACTTGGTAACTGAAAGAGCCTAAGCTTGTGGTTCAACATTTTACTGCTCTTCATAGATCATTGAAGCTTCTATCTCAATAATAATTCTTGATCACCAATATTTTACTTTTGTACACATCTTATATATCAAAAGTTTTACATAAACATACTCAAACTTGAAACATGCACAAGAGGACGGCACAAGAAATAGGAGAAGTACGAATCTCAGACCAAATGTTTGTTGGCAATTCAATTGATGTCACCCAAATTTGCCAACAACAGGCATAAAAGGTGGCAATACCTGTACAAAAATTTGAATGGCGTCAAACTTGAGTTGGCAGCCATTGCAGATAAAAACTCATAGCACACACAAAAATACACTAATTGTGATGGATACATGAGTTGTTTGCTTCACTTTTCAACATTCATCATAATTTCCAAATGTTGTTCCTCATGAATTCTTGATTTATTTTACTCGCTAATGAAGTTTCCTTGATTTAATTATTATTATTATTTTTATTATTAGTATTTGCATGGAAAAACCCATTTCTACACGGTATAGACAAGACAGTAATCTTTTTATTTCCGAAATGGGAAATAATTTCTCTATATGACATTAGAATGTTTTAAAAAGTTGGATACCTACCGTCGCATAAACCTTATTACATCATCTGCATAGAAATTCATCCTTGATCTTCTTGATATTTGCCAGGACATCTTTCATATTGAGCCTCTCATTAGGAGATTCAGCTGTGCAATTC</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAACTTGCCAGCTGAATTGATTGCCACACTTTTGTAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCTTTCATATTGAGCCTCTCATTAGGAGATTCAGCTGTGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235634" ref_strand="+" ref_description="SGN-E235634 [cLED-15-K23]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctataattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaggagtgaatgatgtgattgctgctgtagtgtgtgtcttaattactgaatatgtgacgcgattctactacactcgacctaaggtgacttttacgattgctcttttgaacaacttcaagatgggtattacctatggtctgatcattgatgccttcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="76541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76241" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E235634" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAAC</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTATAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTACGATTGCTCTTTTGAACAACTTCAAGATGGGTATTACCTATGGTCTGATCATTGATGCCTTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241457" ref_strand="+" ref_description="SGN-E241457 [cLED-28-I1]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctttaattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattatatgtggcccagacaatttctctatcttttggagctttaggagtgaatgatgtgattgctgctgtagtgtgtgtcttaattactgaatatgtgacgcgattctactacactcgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="76462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76162" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E241457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCT</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTATATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241296" ref_strand="+" ref_description="SGN-E241296 [cLED-26-P15]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctttaattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaggagtgaatgatgtgattgctgctgtagtgtgtgtcttaattactgaatatgtgacgcgattctactacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="76456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76156" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E241296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACT</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242860" ref_strand="+" ref_description="SGN-E242860 [cLED-31-C5]">
      <seq>aacagttgctgaatcttcttcatccattctgtattctcttctctttaattgcataaatatcaaatgactcattctctaactttagcttctacagctctaattcgatacggcattggtccaaaaattggggctttacctagggcaaatatgccatcgagatcatcttcaaggttattcagaattcaagctgtgcaagataatgggggagggcctcggaggctaatagatattattcgcaatgttcctgaggtttcgagaaattatttcaaaactccttcacggagggcactctttggaggtatatcattactgggtggattttatgtggcccagacaatttctctatcttttggagctttaggagtgaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="75425" stop="76396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75725" g_stop="76096" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E242860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75725" e_stop="76096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGAT</genome_strand>
        <mrna_strand>AACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223409" ref_strand="+" ref_description="SGN-E223409 [cLEL-14-B19](-)">
      <seq>caactcaaaagtacatattttggaccataatgaggccaattgctaaacattaaaatttctaatttcatgctagattcgataccggactatcataggaatgtttatggaacagtagagacaaggaaaagtagaatataatatgttggaattgctacatttacttcagttcaatcttgctcttactggatttgaatccttcctcttccttttcagttgattgccgacacgcctgaaccccttaattgataaaaggacctgagtatagttggtaagtgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="103514" stop="104394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103814" g_stop="104094" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E223409" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103814" e_stop="104094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAAAAGTACATATTTTGGACCATAATGAGGCCAATTGCTAAACATTAAAATTTCTAATTTCATGCTAGATTCGATACCGGACTATCATAGGAATGTTTATGGAACAGTAGAGACAAGGAAAAGTAGAATATAATATGTTGGAATTGCTACATTTACTTCAGTTCAATCTTGCTCTTACTGGATTTGAATCCTTCCTCTTCCTTTTCAGTTGATTGCCGACACGCCTGAACCCCTTAATTGATACAAGGCTCTGAGTATAGTTGGTAAGTGAAAGAA</genome_strand>
        <mrna_strand>CAACTCAAAAGTACATATTTTGGACCATAATGAGGCCAATTGCTAAACATTAAAATTTCTAATTTCATGCTAGATTCGATACCGGACTATCATAGGAATGTTTATGGAACAGTAGAGACAAGGAAAAGTAGAATATAATATGTTGGAATTGCTACATTTACTTCAGTTCAATCTTGCTCTTACTGGATTTGAATCCTTCCTCTTCCTTTTCAGTTGATTGCCGACACGCCTGAACCCCTTAATTGATAAAAGGACCTGAGTATAGTTGGTAAGTGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395977" ref_strand="+" ref_description="SGN-E395977 [TUS-18-B16]">
      <seq>catcaacacagcccttgaatttggtgaatgaagagtatgtaagcaatgcaaatgacccatgatagttggtgaccacaaaattttgaaatgcagttatcacttcttccgggaaagctattatgaagaactcctctatactccaaacaaacgaggcaagaacaaaatttccatccaagtcctgtgcaatccagcaaggtcgtcattgtgtacagggaacatcttgtactgctctatggcagggttccatatgcaaatcattcgaccggaagcaatagtagtaactaaacagatcaagccattgattgaacctatgacagtataatcggtcgtacagggttcattaagctttatcaagttgccaggattttgtatatggatcaaacgatttatctccccagtctgaacaaagatacaatggttatcagggattgaactaaacctcttgctatacagattgataaaccaggggcttgaaatcagcatggaatagtccttatataagcacttcaatcgcatcagagttttgactggtaatcttgaaaaaataaccccaagaatctcatcgttaagacccggaataccaccggtaattcgtcttgcattattcatcttataaggaaaatggagattctatttctggttgagacaatcaatcaaacagttttgaatgcagaaaatagagtatatttcgcccaaatctaactaaaaatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="110432" stop="111963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110732" g_stop="110925" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110926" i_stop="111142" i_length="217">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111143" g_stop="111663" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="715" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E395977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110732" e_stop="110925"/>
          <exon e_start="111143" e_stop="111663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAAGTAAGCCCTTCAATAATTACATCACAGAAGTCACTAATCATTCTTAAGTGACGATTAGACTTCACTTCTTTCCAACACTCCGAATTGGTTGAGTAAATCTCAAGTATAGTCAACGGCCCACCTTTTTTATAGCTTAGAATCCTCATGACCTTGTAATCATCAGAATCTTTATCATATCCAAAGCCCATACCAATATAACATTTGCGTGTCTTTTCAGGGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCA</genome_strand>
        <mrna_strand>CATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAA.........................................................................................................................................................................................................................GGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAATAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379633" ref_strand="+" ref_description="SGN-E379633 [TUS-3-F5]">
      <seq>atcaacacagcccttgaatttggtgaatgaagagtatgtaagcaatgcaaatgacccatgatagttggtgaccacaaaattttgaaatgcagttatcacttcttccgggaaagctattatgaagaactcctctatactccaaacaaacgaggcaagaacaaaatttccatccaagtcctgtgcaatccagcaaggtcgtcattgtgtacagggaacatcttgtactgctctatggcagggttccatatgcaaatcattcgaccggaagcaatagtagtaactaaacagatcaagccattgattgaacctatgacagtataatcggtcgtacagggttcattaagctttatcaagttgccaggattttgtatatggatcaaacgatttatctccccagtctgaacaaagatacaatggttatcagggattgaactaaacctcttgctatacagattgataaaccaggggcttgaaatcagcatggaatagtccttatataagcacttcaatcgcatcagagttttgactggtaatcttgaaaaaataaccccaagaatctcatcgttaagacccggaataccaccggtaattcgtcttgcnattattcatcttataggaaaatggagattctatttctggttgagacaatcnnatcaacagttttgaatgcagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="110433" stop="111926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110733" g_stop="110925" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110926" i_stop="111142" i_length="217">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111143" g_stop="111626" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="677" r_length="484" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E379633" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110733" e_stop="110925"/>
          <exon e_start="111143" e_stop="111626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAAGTAAGCCCTTCAATAATTACATCACAGAAGTCACTAATCATTCTTAAGTGACGATTAGACTTCACTTCTTTCCAACACTCCGAATTGGTTGAGTAAATCTCAAGTATAGTCAACGGCCCACCTTTTTTATAGCTTAGAATCCTCATGACCTTGTAATCATCAGAATCTTTATCATATCCAAAGCCCATACCAATATAACATTTGCGTGTCTTTTCAGGGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGC-ATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGT</genome_strand>
        <mrna_strand>ATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAA.........................................................................................................................................................................................................................GGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCNATTATTCATCTTAT-AGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCNNATCAACAGTTTTGAATGCAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209128" ref_strand="+" ref_description="SGN-E209128 [cLEC-38-E12]">
      <seq>atcaacacagcccttgaatttggtgaatgaagagtatgtaagcaatgcaaatgacccatgatagttggtgaccacaaaattttgaaatgcagttatcacttcttccgggaaagctattatgaagaactcctctatactccaaacaaacgaggcaagaacaaaatttccatccaagtcctgtgcaatccagcaaggtcgtcattgtgtacagggaacatcttgtactgctctatggcagggttccatatgcaaatcattcgaccggaagcaatagtagtaactaaacagatcaagccattgattgaacctatgacagtataatcggtcgtacagggttcattaagctttatcaagttgccaggattttgtatatggatcaaacgatttatctccccagtctgaacaaagatacaatggttatcagggattgaactaaacctcttgctatacagattgataaaccaggggcttgaaatcagcatggaatagtccttatataagcacttcaatcgcatcagagttttgactggtaatcttgaaaaaataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="110433" stop="111797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110733" g_stop="110925" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110926" i_stop="111142" i_length="217">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111143" g_stop="111497" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="548" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E209128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110733" e_stop="110925"/>
          <exon e_start="111143" e_stop="111497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAAGTAAGCCCTTCAATAATTACATCACAGAAGTCACTAATCATTCTTAAGTGACGATTAGACTTCACTTCTTTCCAACACTCCGAATTGGTTGAGTAAATCTCAAGTATAGTCAACGGCCCACCTTTTTTATAGCTTAGAATCCTCATGACCTTGTAATCATCAGAATCTTTATCATATCCAAAGCCCATACCAATATAACATTTGCGTGTCTTTTCAGGGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAAC</genome_strand>
        <mrna_strand>ATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAA.........................................................................................................................................................................................................................GGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379568" ref_strand="+" ref_description="SGN-E379568 [TUS-3-F5](-)">
      <seq>aggcaagaacaaaatttccatccaagtcctgtgcaatccagcaaggtcgtcattgtgtacagggaacatcttgtactgctctatggcagggttccatatgcaaatcattcgaccggaagcaatagtagtaactaaacagatcaagccattgattgaacctatgacagtataatcggtcgtacagggttcattaagctttatcaagttgccaggattttgtatatggatcaaacgatttatctccccagtctgaacaaagatacaatggttatcagggattgaactaaacctcttgctatacagattgataaaccaggggcttgaaatcagcatggaatagtccttatataagcacttcaatcgcatcagagttttgactggtaatcttgaaaaaataaccccaagaatctcatcgttaagacccggaataccaccggtaattcgtcttgcattattcatcttataaggaaaatggagattctatttctggttgagacaatcaatcaaacagttttgaatgcagaaagtagagtatatttcgcccaaatctaactaaaaatcttcaagaaattgctgtgattgaagcactcaccttgagaatcatgagaggcagaaatccaaaacccaaagaagaagaaacactcaacacactctctctccagtggaaacgattatttttaactgattttttgcttctcaactgatctttctctttatttataggggcaggagacgtttttgacatggatcgccaactaggactttctgtggattagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="110582" stop="112177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110882" g_stop="110925" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110926" i_stop="111142" i_length="217">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111143" g_stop="111877" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="779" r_length="735" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E379568" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110882" e_stop="110925"/>
          <exon e_start="111143" e_stop="111877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAAGTAAGCCCTTCAATAATTACATCACAGAAGTCACTAATCATTCTTAAGTGACGATTAGACTTCACTTCTTTCCAACACTCCGAATTGGTTGAGTAAATCTCAAGTATAGTCAACGGCCCACCTTTTTTATAGCTTAGAATCCTCATGACCTTGTAATCATCAGAATCTTTATCATATCCAAAGCCCATACCAATATAACATTTGCGTGTCTTTTCAGGGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCAAGAAATTGCTGTGATTGAAGCACTCACCTTGAGAATCATGAGAGGCAGAAATCCAAAACCCAAAGAAGAAGAAACACTCAACACACTCTCTCTCCAGTGGAAACGATTATTTTTAACTGATTTTTTGCTTCTCAACTGATCTTTCTCTTTATTTATAGGGGCAGGAGACGTTTTTGACATGGAAAGCCAACTAAGCATTTCTGTGGATTAGTAT</genome_strand>
        <mrna_strand>AGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAA.........................................................................................................................................................................................................................GGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCAAGAAATTGCTGTGATTGAAGCACTCACCTTGAGAATCATGAGAGGCAGAAATCCAAAACCCAAAGAAGAAGAAACACTCAACACACTCTCTCTCCAGTGGAAACGATTATTTTTAACTGATTTTTTGCTTCTCAACTGATCTTTCTCTTTATTTATAGGGGCAGGAGACGTTTTTGACATGGATCGCCAACTAGGACTTTCTGTGGATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395976" ref_strand="+" ref_description="SGN-E395976 [TUS-18-B16](-)">
      <seq>gcagggttccatatgcaaatcattcgaccggaagcaatagtagtaactaaacagatcaagccattgattgaacctatgacagtataatcggtcgtacagggttcattaagctttatcaagttgccaggattttgtatatggatcaaacgatttatctccccagtctgaacaaagatacaatggttatcagggattgaactaaacctcttgctatacagattgataaaccaggggcttgaaatcagcatggaatagtccttatataagcacttcaatcgcatcagagttttgactggtaatcttgaaaaaataaccccaagaatctcatcgttaagacccggaataccaccggtaattcgtcttgcattattcatcttataaggaaaatggagattctatttctggttgagacaatcaatcaaacagttttgaatgcagaaagtagagtatatttcgcccaaatctaactaaaaatcttcaagaaattgctgtgattgaagcactcaccttgagaatcatgagaggcagaaatccaaaacccaaagaagaagaaacactcaacacactctctctccagtggaaacgattatttttaactgattttttgcttctcaactgatctttctctttatttataggggcaggagacgtttttgacatggaaagccaactaagcatttctgtggattagtatatataaattctatatttacatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="110884" stop="112205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111184" g_stop="111912" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E395976" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111184" e_stop="111912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCAAGAAATTGCTGTGATTGAAGCACTCACCTTGAGAATCATGAGAGGCAGAAATCCAAAACCCAAAGAAGAAGAAACACTCAACACACTCTCTCTCCAGTGGAAACGATTATTTTTAACTGATTTTTTGCTTCTCAACTGATCTTTCTCTTTATTTATAGGGGCAGGAGACGTTTTTGACATGGAAAGCCAACTAAGCATTTCTGTGGATTAGTATATATAAATTCTATATTTACATCTTTATATGATTTT</genome_strand>
        <mrna_strand>GCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCAAGAAATTGCTGTGATTGAAGCACTCACCTTGAGAATCATGAGAGGCAGAAATCCAAAACCCAAAGAAGAAGAAACACTCAACACACTCTCTCTCCAGTGGAAACGATTATTTTTAACTGATTTTTTGCTTCTCAACTGATCTTTCTCTTTATTTATAGGGGCAGGAGACGTTTTTGACATGGAAAGCCAACTAAGCATTTCTGTGGATTAGTATATATAAATTCTATATTTACATCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211904" ref_strand="+" ref_description="SGN-E211904 [cLEC-66-M11]">
      <seq>ctgatgggcgtacttccagatgaaatcggtaaccttcaagagttgttgatgctgaagttggatttcaatgactttagtgggtcgatccctgttggtatatttaatggctcaactcttgtatctattacactcacacaaaaccgcatttcaggtaatcttcccaacactataggcagggggtcacccaatcttgaacgaatttttctaggtgcaaataacattgatggtcttttacctagttccatttcaaatttgtctaagcttactgtactcgaacttagtgcaaatgcactcacaggttcaattcctgactttctaggaaacttaggacttattgaaattctcaacttgcaaggtaacttcttcactagtgactcttcaatgttgagttttattactcctttggccaattgtaaacacttaagagaactgatattgtctatcaatcccctaaatgcaatacttccaaaatccatagggaatctttcttctcttcagacgtttgaggcaataggttgtaatctcaaaggccatattccaaatgaaattggaaatttgagaaatttatcttatttgaagctggataaaaatgactttactggaattgtcccgacgacaataagttctttggaaaaacttcaacagttttcacttggtacaaacagaataagtggtcctttcccaattgttgtatgtgagctacccaacttgggcttgctaaacctttcacaaaacaaatgtggggaaatattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="116901" stop="118249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117111" g_stop="117117" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117118" i_stop="117201" i_length="84">
            <donor d_prob="0.728" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117202" g_stop="117949" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="755" r_length="748" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E211904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117111" e_stop="117117"/>
          <exon e_start="117202" e_stop="117949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGGTATGGAATAATATGTAACCACATGATTTCAGAATGTTAGTTCTTTCAATATTTCGTCTAATGTAATCTTACTTCTTTCTGCAGGCGTACTTCCAGATGAAATCGGTAACCTTCAAGAGTTGTTGATGCTGAAGTTGGATTTCAATGACTTTAGTGGGTCGATCCCTGTTGGTATATTTAATGGCTCAACTCTTGTATCTATTACACTCACACAAAACCGCATTTCAGGTAATCTTCCCAACACTATAGGCAGGGGGTCACCCAATCTTGAACGAATTTTTCTAGGTGCAAATAACATTGATGGTCTTTTACCTAGTTCCATTTCAAATTTGTCTAAGCTTACTGTACTCGAACTTAGTGCAAATGCACTCACAGGTTCAATTCCTGACTTTCTAGGAAACTTAGGACTTATTGAAATTCTCAACTTGCAAGGTAACTTCTTCACTAGTGACTCTTCAATGTTGAGTTTTATTACTCCTTTGGCCAATTGTAAACACTTAAGAGAACTGATATTGTCTATCAATCCCCTAAATGCAATACTTCCAAAATCCATAGGGAATCTTTCTTCTCTTCAGACGTTTGAGGCAATAGGTTGTAATCTCAAAGGCCATATTCCAAATGAAATTGGAAATTTGAGAAATTTATCTTATTTGAAGCTGGATAAAAATGACTTTACTGGAATTGTCCCGACGACAATAAGTTCTTTGG-AAAACTTCAACAGTTTTCACTTGGTACAAACAGAATAAGTGGTCCTTTCCCAATTGTTGTATGTGAGCTACCCAACTTGGGCTTGCTAAACCTTTCACAAAACCAAATGTGGGGAAATATTCCT</genome_strand>
        <mrna_strand>CTGATGG....................................................................................GCGTACTTCCAGATGAAATCGGTAACCTTCAAGAGTTGTTGATGCTGAAGTTGGATTTCAATGACTTTAGTGGGTCGATCCCTGTTGGTATATTTAATGGCTCAACTCTTGTATCTATTACACTCACACAAAACCGCATTTCAGGTAATCTTCCCAACACTATAGGCAGGGGGTCACCCAATCTTGAACGAATTTTTCTAGGTGCAAATAACATTGATGGTCTTTTACCTAGTTCCATTTCAAATTTGTCTAAGCTTACTGTACTCGAACTTAGTGCAAATGCACTCACAGGTTCAATTCCTGACTTTCTAGGAAACTTAGGACTTATTGAAATTCTCAACTTGCAAGGTAACTTCTTCACTAGTGACTCTTCAATGTTGAGTTTTATTACTCCTTTGGCCAATTGTAAACACTTAAGAGAACTGATATTGTCTATCAATCCCCTAAATGCAATACTTCCAAAATCCATAGGGAATCTTTCTTCTCTTCAGACGTTTGAGGCAATAGGTTGTAATCTCAAAGGCCATATTCCAAATGAAATTGGAAATTTGAGAAATTTATCTTATTTGAAGCTGGATAAAAATGACTTTACTGGAATTGTCCCGACGACAATAAGTTCTTTGGAAAAACTTCAACAGTTTTCACTTGGTACAAACAGAATAAGTGGTCCTTTCCCAATTGTTGTATGTGAGCTACCCAACTTGGGCTTGCTAAACCTTTCACAAAA-CAAATGTGGGGAAATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286383" ref_strand="+" ref_description="SGN-E286383 [cLES-11-L1]">
      <seq>agcaactacactcctttaatgtctcattcaacaggttacacggggaaatcccgagtggtggaccttttcttaatctcccttaccagtctttcttgtcgaatgaaggattgtgtggtaatcctcaaaagcatgtcccagcttgtcgttcaaattcaaagaatcattccaattcaaagaaacgaagaataatatggattgtagttgtctcttcagttatctctattatagggcttgcttcagcaataattttcgtgttaatgcgacgtcagggtaaagtaatcaaagctgaagatgagtggtctcctgaggtagcaccacagagattttcttactatgaaacttcaaagagcaactcaggggtttgatgaaaataacttgctaggtagtggaggttttggttctgtttttaaagggacgttggcagatgggatgatactagctgtcaaagtttttaatgtgcagatggaaggtacatttcaaacctttgatagagaatgtgaaatcttgaggaatcttcgtcacagaaatctcacaaagatcattagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="118029" stop="119176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118329" g_stop="118876" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E286383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118329" e_stop="118876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTACACTCCTTTAATGTCTCATTCAACAGGTTACACGGGGAAATCCCGAGTGGTGGACCTTTTCTTAATCTCCCTTACCAGTCTTTCTTGTCGAATGAAGGATTGTGTGGTAATCCTCAAAAGCATGTCCCAGCTTGTCGTTCAAATTCAAAGAATCATTCCAATTCAAAGAAACGAAGAATAATATGGATTGTAGTTGTCTCTTCAGTTATCTCTATTATAGGGCTTGCTTCAGCAATAATTTTCGTGTTAATGCGACGTCAGGGTAAAGTAATCAAAGCTGAAGATGAGTGGTCTCCTGAGGTAGCACCACAGAGATTTTCTTACTATG-AACTTCAAAGAGCAACTCAGGGGTTTGATGAAAATAACTTGCTAGGTAGTGGAGGTTTTGGTTCTGTTTTTAAAGGGACGTTGGCAGATGGGATGATACTAGCTGTCAAAGTTTTTAATGTGCAGATGGAAGGTACATTTCAAACCTTTGATAGAGAATGTGAAATCTTGAGGAATCTTCGTCACAGAAATCTCACAAAGATCATTAGCAGC</genome_strand>
        <mrna_strand>AGCAACTACACTCCTTTAATGTCTCATTCAACAGGTTACACGGGGAAATCCCGAGTGGTGGACCTTTTCTTAATCTCCCTTACCAGTCTTTCTTGTCGAATGAAGGATTGTGTGGTAATCCTCAAAAGCATGTCCCAGCTTGTCGTTCAAATTCAAAGAATCATTCCAATTCAAAGAAACGAAGAATAATATGGATTGTAGTTGTCTCTTCAGTTATCTCTATTATAGGGCTTGCTTCAGCAATAATTTTCGTGTTAATGCGACGTCAGGGTAAAGTAATCAAAGCTGAAGATGAGTGGTCTCCTGAGGTAGCACCACAGAGATTTTCTTACTATGAAACTTCAAAGAGCAACTCAGGGGTTTGATGAAAATAACTTGCTAGGTAGTGGAGGTTTTGGTTCTGTTTTTAAAGGGACGTTGGCAGATGGGATGATACTAGCTGTCAAAGTTTTTAATGTGCAGATGGAAGGTACATTTCAAACCTTTGATAGAGAATGTGAAATCTTGAGGAATCTTCGTCACAGAAATCTCACAAAGATCATTAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312775" ref_strand="+" ref_description="SGN-E312775 [cTOA-8-D8]">
      <seq>ttgtttgttgggtgcattggtacagatctcgtgtcctcacaggatatgtgcaacacgattgtgagttcgctgctggccacctgaagagattttcatttcgtgaactgcaaattgcaactgcaaatttcagctctaagaacatactaggacaaggtggatttggagtggtctacaaaggataccttccaaataggacagtagtggctgtcaaaagattgagagatccaactttcactggagaagtgcagtttcaaacagaagttgagatgataggcttggctgtgcatcggaaccttctacgtctgtatggattctgtacgactcccgaggaaagattacttatttacccttatatgccaaatgggagcgttgccgattgcttgagagacaatggacgggataaaccgtttttggattggagaaagcgcatgcatatagctcttggagctgccagaggtcttctgtatttgcatgaacagtgtaatcctaaaataattcacagagatgttaaggcagctaatattctgcttgatgaaagttttgaagctgttgttggtgattttggtcttgctaagcttttagactgtagagattcacatgttacaactgcagttcgtggtactataggtcatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="137138" stop="135099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136838" g_stop="136791" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136790" i_stop="136706" i_length="85">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136705" g_stop="136367" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="387" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136366" i_stop="135649" i_length="718">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135648" g_stop="135399" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="637" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E312775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136838" e_stop="136791"/>
          <exon e_start="136705" e_stop="136367"/>
          <exon e_start="135648" e_stop="135399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTTGGGTGCATTGGTACAGATCTCGTGTCCTCACAGGATATGGTAATTACAAGATTGGAAACACATCTCTGATTTCTTGCACATTAAGACTAGATACATTTTGAGTCTCTGATCATTTTATCTGCAGTGCAACACGATTGTGAGTTCGCTGCTGGCCACCTGAAGAGATTTTCATTTCGTGAACTGCAAATTGCAACTGCAAATTTCAGCTCTAAGAACATACTAGGACAAGGTGGATTTGGAGTGGTCTACAAAGGATACCTTCCAAATAGGACAGTAGTGGCTGTCAAAAGATTGAGAGATCCAACTTTCACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATAGGCTTGGCTGTGCATCGGAACCTTCTACGTCTGTATGGATTCTGTACGACTCCCGAGGAAAGATTACTTATTTACCCTTATATGCCAAATGGGAGCGTTGCCGATTGCTTGAGAGGTTTGCTTTGAAGTATATTTGCTTGGTGCTTTTGCTGAAGCATTCTTTTTTCTTGTCACAATGGAATGCTTAACTGATCAAGTCTAACATATGCATTTCAATTATTCCTAGTGCTCTCAATGTTAATCTGGCAAAAACTATTGAAAGGTCATGGTTTATGGAAATCCAGGACTTTGTGCTATATTTTAACTGTACATCTTAAACACCTCAACTTTTGATTGATTATCTGAGATAGTTAGATTGGATTTCCATTGTCAATGTTTCTTGTGAAAGTGGAATGAAATCTATTATCAACATATTCAATCAACAATGCATCAAACCCAAATTAGTTGGGGTTGACTATATGATTTTTTTTGTATCCATTGCAATTAAGACTCCTGATGTAGTGCATTACCTAAGTAGGCATGCCTCTAGCAATCTATTGCCACCTTACGTGTTATTAAGCTTAATTTTTCTGTGACAGTTTCTATCCACCTTCTGAAACGCTAATGTCAATTATGGTATCAACTTACAATATACATGAACAAAATAAATTGTTATTTGGCAGTAAGGTAACAGTCGTGTTGTCATTAACTTTTAGCATGACCAATTCAAGTCAATTTTTAGGTGTATGAACACAAAATCAAGTTGGAATTATTGGAACGCAAACACGTTAGCTTGATGTAGTGACTGTGTCATCTTTTGCTCTGTTCTCACATAATCTTTTGTTATTTACCAGACAATGGACGGGATAAACCGTTTTTGGATTGGAGAAAGCGCATGCATATAGCTCTTGGAGCTGCCAGAGGTCTTCTGTATTTGCATGAACAGTGTAATCCTAAAATAATTCACAGAGATGTTAAGGCAGCTAATATTCTGCTTGATGAAAGTTTTGAAGCTGTTGTTGGTGATTTTGGTCTTGCTAAGCTTTTAGACTGTAGAGATTCACATGTTACAACTGCAGTTCGTGGTACTATAGGTCATATAGC</genome_strand>
        <mrna_strand>TTGTTTGTTGGGTGCATTGGTACAGATCTCGTGTCCTCACAGGATATG.....................................................................................TGCAACACGATTGTGAGTTCGCTGCTGGCCACCTGAAGAGATTTTCATTTCGTGAACTGCAAATTGCAACTGCAAATTTCAGCTCTAAGAACATACTAGGACAAGGTGGATTTGGAGTGGTCTACAAAGGATACCTTCCAAATAGGACAGTAGTGGCTGTCAAAAGATTGAGAGATCCAACTTTCACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATAGGCTTGGCTGTGCATCGGAACCTTCTACGTCTGTATGGATTCTGTACGACTCCCGAGGAAAGATTACTTATTTACCCTTATATGCCAAATGGGAGCGTTGCCGATTGCTTGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGACGGGATAAACCGTTTTTGGATTGGAGAAAGCGCATGCATATAGCTCTTGGAGCTGCCAGAGGTCTTCTGTATTTGCATGAACAGTGTAATCCTAAAATAATTCACAGAGATGTTAAGGCAGCTAATATTCTGCTTGATGAAAGTTTTGAAGCTGTTGTTGGTGATTTTGGTCTTGCTAAGCTTTTAGACTGTAGAGATTCACATGTTACAACTGCAGTTCGTGGTACTATAGGTCATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365982" ref_strand="+" ref_description="SGN-E365982 [cLPT-11-D23]">
      <seq>tgctgctggccacctgaagagattttcatttcgtgaactgcaaattgcaactgcaaatttcagctctaagaacatactaggacaaggtggatttggagtggtctacaaaggataccttccaaataggacagtagtggctgtcaaaagattgagagatccaactttcactggagaagtgcagtttcaaacagaagttgagatgataggcttggctgtgcatcggaaccttctacgtctgtatggattctgtacgactcccgaggaaagattacttatttacccttatatgccaaatgggagcgttgccgattgcttgagagacaatggccgggataaaccgtttttggattggagaaagcgcatgcatatagctcttggagctgccagaggtcttctgtatttgcatgaacagtgtaatcctaaaataattcacagagatgttaaggcagctaatattctgcttgatgaaagttttgaagctgttgttggtgattttggtcttgctaagcttttagactgtagagattcacatgttacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="136985" stop="135128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136686" g_stop="136367" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136366" i_stop="135649" i_length="718">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135648" g_stop="135428" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="541" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E365982" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136686" e_stop="136367"/>
          <exon e_start="135648" e_stop="135428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGCTGGCCACCTGAAGAGATTTTCATTTCGTGAACTGCAAATTGCAACTGCAAATTTCAGCTCTAAGAACATACTAGGACAAGGTGGATTTGGAGTGGTCTACAAAGGATACCTTCCAAATAGGACAGTAGTGGCTGTCAAAAGATTGAGAGATCCAACTTTCACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATAGGCTTGGCTGTGCATCGGAACCTTCTACGTCTGTATGGATTCTGTACGACTCCCGAGGAAAGATTACTTATTTACCCTTATATGCCAAATGGGAGCGTTGCCGATTGCTTGAGAGGTTTGCTTTGAAGTATATTTGCTTGGTGCTTTTGCTGAAGCATTCTTTTTTCTTGTCACAATGGAATGCTTAACTGATCAAGTCTAACATATGCATTTCAATTATTCCTAGTGCTCTCAATGTTAATCTGGCAAAAACTATTGAAAGGTCATGGTTTATGGAAATCCAGGACTTTGTGCTATATTTTAACTGTACATCTTAAACACCTCAACTTTTGATTGATTATCTGAGATAGTTAGATTGGATTTCCATTGTCAATGTTTCTTGTGAAAGTGGAATGAAATCTATTATCAACATATTCAATCAACAATGCATCAAACCCAAATTAGTTGGGGTTGACTATATGATTTTTTTTGTATCCATTGCAATTAAGACTCCTGATGTAGTGCATTACCTAAGTAGGCATGCCTCTAGCAATCTATTGCCACCTTACGTGTTATTAAGCTTAATTTTTCTGTGACAGTTTCTATCCACCTTCTGAAACGCTAATGTCAATTATGGTATCAACTTACAATATACATGAACAAAATAAATTGTTATTTGGCAGTAAGGTAACAGTCGTGTTGTCATTAACTTTTAGCATGACCAATTCAAGTCAATTTTTAGGTGTATGAACACAAAATCAAGTTGGAATTATTGGAACGCAAACACGTTAGCTTGATGTAGTGACTGTGTCATCTTTTGCTCTGTTCTCACATAATCTTTTGTTATTTACCAGACAATGGACGGGATAAACCGTTTTTGGATTGGAGAAAGCGCATGCATATAGCTCTTGGAGCTGCCAGAGGTCTTCTGTATTTGCATGAACAGTGTAATCCTAAAATAATTCACAGAGATGTTAAGGCAGCTAATATTCTGCTTGATGAAAGTTTTGAAGCTGTTGTTGGTGATTTTGGTCTTGCTAAGCTTTTAGACTGTAGAGATTCACATGTTACAACT</genome_strand>
        <mrna_strand>TGCTGCTGGCCACCTGAAGAGATTTTCATTTCGTGAACTGCAAATTGCAACTGCAAATTTCAGCTCTAAGAACATACTAGGACAAGGTGGATTTGGAGTGGTCTACAAAGGATACCTTCCAAATAGGACAGTAGTGGCTGTCAAAAGATTGAGAGATCCAACTTTCACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATAGGCTTGGCTGTGCATCGGAACCTTCTACGTCTGTATGGATTCTGTACGACTCCCGAGGAAAGATTACTTATTTACCCTTATATGCCAAATGGGAGCGTTGCCGATTGCTTGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCCGGGATAAACCGTTTTTGGATTGGAGAAAGCGCATGCATATAGCTCTTGGAGCTGCCAGAGGTCTTCTGTATTTGCATGAACAGTGTAATCCTAAAATAATTCACAGAGATGTTAAGGCAGCTAATATTCTGCTTGATGAAAGTTTTGAAGCTGTTGTTGGTGATTTTGGTCTTGCTAAGCTTTTAGACTGTAGAGATTCACATGTTACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302168" ref_strand="+" ref_description="SGN-E302168 [cLEW-19-H18]">
      <seq>aatgatgaattctaaaaaggacctttttctgaaagctctgcaccaaaatctttcttttgggtaattagctttttggatccaaatggtaactttgctactcgttttctcatttcttcattgggtggccactactccagtttccatgggttttctttcacctaaaggtgtcaactatgaagtggcagcattgatgtctatgaagaataaaatgagagatgaatatcatgtgttagatggatgggatataaattctgttgatccttgtacatggtacatggttggttgttcttcagaaggctttgttatttctcttgaaatggcgagtatgggattatctggcacactttcgcctagtattgggaatttaactcatcttcggacgatgttgttgcagaataatcatttatctggtccgattcctgctgaaattggacagctcactgaactgctgacccttgatttgtctggtaatcagtttgatggaggaattcctagggcgttgggtcgcctggtttatttaaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="139595" stop="137877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139295" g_stop="139117" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139116" i_stop="138843" i_length="274">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138842" g_stop="138710" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="312" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138709" i_stop="138614" i_length="96">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138613" g_stop="138542" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138541" i_stop="138320" i_length="222">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138319" g_stop="138177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="527" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E302168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139295" e_stop="139117"/>
          <exon e_start="138842" e_stop="138710"/>
          <exon e_start="138613" e_stop="138542"/>
          <exon e_start="138319" e_stop="138177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGAATTCTAAAAAGGACCTTTTTCTGAAAGCTCTGCACCAAAATCTTTCTTTTGGGTAATTAGCTTTTTGGATCCAAATGGTAACTTTGCTACTCGTTTTCTCATTTCTTCATTGGGTGGCCACTACTCCAGTTTCCATGGGTTTTCTTTCACCTAAAGGTGTCAACTATGAAGGTAAAGATTAAAACTTTACTATAATCCAACCATTTCTTGTTTTTCTTTTTGCTGTTAAAAATCCAAATTTTGTTGATTACCACTATTTTAAGCATATGTTTATTTTTGTTTTCATAGTTTAGAGTGGTAAAAGATTAAAACTTTACTAGAAAAATCCAAACTTTGTTGCTTAGCATTGTTTATAAGCATTTATTTATTTATGTTTTCATAGTTTAGAGTGGTAAAGATTGAAACTTTACTTAAAGATTTGTTAAATTTATTGTGGGGTAAGCAGTGGCAGCATTGATGTCTATGAAGAATAAAATGAGAGATGAATATCATGTGTTAGATGGATGGGATATAAATTCTGTTGATCCTTGTACATGGTACATGGTTGGTTGTTCTTCAGAAGGCTTTGTTATTTCTCTGTGAGTTTTCTCCTTTTCTGTTACATTTTGTCCATTTGTTTTCCCTTACTGTGGAAATAATTTGTTATTATGCTTTGGTTATATAATTCTTGGCAGTGAAATGGCGAGTATGGGATTATCTGGCACACTTTCGCCTAGTATTGGGAATTTAACTCATCTTCGGACGATGTAAGACTAATTTGACATGAATTTCCCACTTTATTCTTATTTTGATGTGATGCTGCTCACATATATCTTGGAGATACTTGAAGTTAAAATCACATAGTACTTAGTTTAGTAATTACTAATACTGTTAGGAGTCACATTAAGTGCTTTATTATTTGTAAGATATATTGAAAAATATCTTTTAATATGATTGATAAAGTCATTTTTGTATTGGTTTTATTGTAGGTTGTTGCAGAATAATCATTTATCTGGTCCGATTCCTGCTGAAATTGGACAGCTCACTGAACTGCTGACCCTTGATTTGTCTGGTAATCAGTTTGATGGAGGAATTCCTAGGGCGTTGGGTCGCCTGGTTTATTTAAATTACT</genome_strand>
        <mrna_strand>AATGATGAATTCTAAAAAGGACCTTTTTCTGAAAGCTCTGCACCAAAATCTTTCTTTTGGGTAATTAGCTTTTTGGATCCAAATGGTAACTTTGCTACTCGTTTTCTCATTTCTTCATTGGGTGGCCACTACTCCAGTTTCCATGGGTTTTCTTTCACCTAAAGGTGTCAACTATGAAG..................................................................................................................................................................................................................................................................................TGGCAGCATTGATGTCTATGAAGAATAAAATGAGAGATGAATATCATGTGTTAGATGGATGGGATATAAATTCTGTTGATCCTTGTACATGGTACATGGTTGGTTGTTCTTCAGAAGGCTTTGTTATTTCTCT................................................................................................TGAAATGGCGAGTATGGGATTATCTGGCACACTTTCGCCTAGTATTGGGAATTTAACTCATCTTCGGACGAT..............................................................................................................................................................................................................................GTTGTTGCAGAATAATCATTTATCTGGTCCGATTCCTGCTGAAATTGGACAGCTCACTGAACTGCTGACCCTTGATTTGTCTGGTAATCAGTTTGATGGAGGAATTCCTAGGGCGTTGGGTCGCCTGGTTTATTTAAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218402" ref_strand="+" ref_description="SGN-E218402 [cLEL-18-L22](-)">
      <seq>agtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctattttgttgcatcttgtcatttaaaccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142270" stop="141251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141970" g_stop="141552" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="450"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E218402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141970" e_stop="141552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCATCTTGTCATTTAAACCTTA</genome_strand>
        <mrna_strand>AGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCATCTTGTCATTTAAACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405832" ref_strand="+" ref_description="SGN-E405832 [PPI-1-B20]">
      <seq>aagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacgtcttcccaatggtcgcccattgccccctctcttcaattttaagcaggagttgtctggtgcctctccggaccttgtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacagtgacatgacgtgaagtatatgcttagtaaagtatactagtttatgatctatatatgaagggatccaagttacatccctccagagcagaggagtccagcataacaagcgacagtatctcctggtcgaaaaggacaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcctatcttagcagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgcatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtttttttttcttcttaagttgatatctcacttcagtttgtatttagcagtcttgtactttgaaaggagttgcaagcaaatttgtgttacagttgctctatgtgattatatgattaatcaaacatatctattttgttgcctcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144461" stop="141273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144161" g_stop="144103" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="161" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141558" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="759" r_length="598" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E405832" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144161" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTC-CCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTC---TACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGA-T-TATGATCAATCAAACGTATCTATTTTGTTGCATCTTGTCATTTAA</genome_strand>
        <mrna_strand>AAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGTCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGGTGCCTCTCCGGACCTTGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACAGTGACATGACGTGAAGTATATGCTTAGTAAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACATCCC-TCCAGAGCAGAGGAGTCCAGCATAACAAGCGACAGTATCTCCTGGTCGAAAAGGACAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGCATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTTTTTTTTTCTTCTTAAGTTGATATCTCACTTCAGTTTGTATTTAGCAGTCTTGTACTTTGAAAGGAGTTGCAAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATATGATTAATCAAACATATCTATTTTGTTGCCTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420191" ref_strand="+" ref_description="SGN-E420191 [STM-30-J8]">
      <seq>aaactttttttaagaggcaacaaaatagatatgtttgattaatcatataatcacatagagcaactgtaacacaaatttgcttgcaactcctttcaaagtacaagactgctaaatacaaactgaagtgagatatcaacttaagaagaaaaaaaaacactgccctttcaagtcctggcaatccttttggagccttgcaacttgtccatgcatattcaatcgtgtccccggaagctttctggtcaatatactactaacaaacatgtacaaaaacatatttccttttcactagttggctgctaagataggaagactttgaagagtggaacaaaaaagataatacaaagtacagaactaaaatgcactgcagcccattacattgtccttttcgaccaggagatactgtcgcttgttatgctggactcctctgctctggagggatgtaacttggatcccttcatatatagatcataaactagtatactttactaagcatatacttcacgtcatgtcactgtgggatgcaaaaagatgcaggcccatctgcctttttatatggtctggtatcaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="141273" stop="142422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141567" g_stop="142122" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="572" r_length="561" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E420191" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141567" e_stop="142122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCAACAAAATAGATACGTTTGATTGATC--ATAATCACATAGAGCAACTGTAACACAAATTTGCTCGCAACTCTTTTCAAAGT---AGACTGCTAAATACAAACTGAAGTGAGATATAAACTTACG-GGAAAAAAAAATACTGCCCTTTCAAGTCCTGGCAATCCTTTTGGAGCCTTGCAACTTGTCCATACATATTCAAACGTGTCCCCGGAAGCTTTCTGGTCAATTTACTACTAACAAACATGTACAAAAACATATTTCCTTTTCACTAGTTGGCTACTAAGATGGGAAGACTTTGAAGAGTGGAACAAAAAAGATAATACAAAGTACAGAACTAAAATGCACTGCAGCCCCATTACATTGTCCTTTTCGACCAGGATATACTGTCGC-TGTCATGCTGGACTCCTCTGCTCTGGAAGGGGTGTCACTTGGATCCCTTCATATATAGATCATAAACTAGTATACTTCACTAAACATATACTTCACGTCATGTCGCCGTGGGATGCAAAAAGATGCAGGCCCATCTGTCTTTTTATATGGTCTGGTATCAACCTGT</genome_strand>
        <mrna_strand>AAGAGGCAACAAAATAGATATGTTTGATTAATCATATAATCACATAGAGCAACTGTAACACAAATTTGCTTGCAACTCCTTTCAAAGTACAAGACTGCTAAATACAAACTGAAGTGAGATATCAACTTAAGAAGAAAAAAAAACACTGCCCTTTCAAGTCCTGGCAATCCTTTTGGAGCCTTGCAACTTGTCCATGCATATTCAATCGTGTCCCCGGAAGCTTTCTGGTCAATATACTACTAACAAACATGTACAAAAACATATTTCCTTTTCACTAGTTGGCTGCTAAGATAGGAAGACTTTGAAGAGTGGAACAAAAAAGATAATACAAAGTACAGAACTAAAATGCACTGCAG-CCCATTACATTGTCCTTTTCGACCAGGAGATACTGTCGCTTGTTATGCTGGACTCCTCTGCTCTGG-AGGGATGTAACTTGGATCCCTTCATATATAGATCATAAACTAGTATACTTTACTAAGCATATACTTCACGTCATGTCACTGTGGGATGCAAAAAGATGCAGGCCCATCTGCCTTTTTATATGGTCTGGTATCAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409205" ref_strand="+" ref_description="SGN-E409205 [PPI-13-K22]">
      <seq>gttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacggtgacatgacgtgaagtatatgtttagtaaaatatactagtttatgatctatatatgaagggatccaagttacaccccttccagagcagaggagtccagcatgacaagcgagacagtatctcctggtcgaaaaggacaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcatagtcttcctatcttagcagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtcttttttttccttaagttgatatgtcacttcagtttgtatttagcagtcttgtactttgaaaagagttccaagcaaatttgtgttacagttgctctatgtgattatgattaatcaaacatatctattttgttgcctcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142418" stop="141267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142118" g_stop="141567" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E409205" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142118" e_stop="141567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGC--GACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTC---TACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCATCTT</genome_strand>
        <mrna_strand>GTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACGGTGACATGACGTGAAGTATATGTTTAGTAAAATATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAAGCGAGACAGTATCTCCTGGTCGAAAAGGACAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCATAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTCTTTTTTTTCCTTAAGTTGATATGTCACTTCAGTTTGTATTTAGCAGTCTTGTACTTTGAAAAGAGTTCCAAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATTAATCAAACATATCTATTTTGTTGCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623941" ref_strand="+" ref_description="SGN-E623941 [89086]">
      <seq>cgagacagtatctcctggtcgaaaaggacaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcatagtcttcctatcttagcagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtcttttttttccttaagttgatatgtcacttcagtttgtatttagcagtcttgtactttgaaaagagttccaagcaaatttgtgttacagttgctctatgtgattatgattaatcaaacatatctattttgttgcctcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142256" stop="141267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141957" g_stop="141567" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="414"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E623941" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141957" e_stop="141567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTC---TACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCATCTT</genome_strand>
        <mrna_strand>CGAGACAGTATCTCCTGGTCGAAAAGGACAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCATAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTCTTTTTTTTCCTTAAGTTGATATGTCACTTCAGTTTGTATTTAGCAGTCTTGTACTTTGAAAAGAGTTCCAAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATTAATCAAACATATCTATTTTGTTGCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357594" ref_strand="+" ref_description="SGN-E357594 [cTOS-23-P6]">
      <seq>ttggcataaggttttccacaaacggatgcctcctgaagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacggcttcccaatggtcgcccattgccccctctcttcaattttaagcaggagttatctggtgcctctccggacctcgtaaacaggttgataccagaccatataaaaagacagatgggcctgcatctttttgcatcccacggcgacatgacgtgaagtatatgtttagtgaagtatactagtttatgatctatatatgaagggatccaagtgacaccccttccagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaaatcaacgtatctattttgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144495" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144186" g_stop="144103" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="94" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141570" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="777" r_length="581" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E357594" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144186" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCAT</genome_strand>
        <mrna_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAAATCAACGTATCTATTTTGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357487" ref_strand="+" ref_description="SGN-E357487 [cTOS-23-C18]">
      <seq>ttggcataaggttttccacaaacggatgcctcctgaagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacggcttcccaatggtcgcccattgccccctctcttcaattttaagcaggagttatctggtgcctctccggacctcgtaaacaggttgataccagaccatataaaaagacagatgggcctgcatctttttgcatcccacggcgacatgacgtgaagtatatgtttagtgaagtatactagtttatgatctatatatgaagggatccaagtgacaccccttccagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatncatcaaacgtatctattttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144495" stop="141272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144186" g_stop="144103" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="94" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141572" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="775" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E357487" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144186" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGC</genome_strand>
        <mrna_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATNCATCAAACGTATCTATTTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714279" ref_strand="+" ref_description="SGN-E714279 [FB11AA06]">
      <seq>cacaaatcaaagcacacccttggcataaggttttccacaaacggatgcctcctgaagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacggcttcccaatggtcgcccattgccccctctcttcaattttaagcaggagttatctggtgcctctccggacctcgtaaacaggttgataccagaccatataaaaagacagatgggcctgcatctttttgcatcccacggcgacatgacgtgaagtatatgtttagtgaagtatactagtttatgatctatatatgaagggatccaagtgacaccccttccagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctattttgttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144495" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144186" g_stop="144103" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="113" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="215" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141572" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="794" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="805"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E714279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144186" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGC</genome_strand>
        <mrna_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553011" ref_strand="+" ref_description="SGN-E553011 [cTSB-5-L7]">
      <seq>ggtcgcccattgccccctctcttcaattttaagcaggagttatctggtgcctctccggacctcgtaaacaggttgataccagaccatataaaaagacagatgggcctgcatctttttgcatcccacggcgacatgacgtgaagtatatgtttagtgaagtatactagtttatgatctatatatgaagggatccaagtgacaccccttccagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctattttgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144111" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143811" g_stop="143773" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142150" g_stop="141574" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="616" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="664"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E553011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143811" e_stop="143773"/>
          <exon e_start="142150" e_stop="141574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</genome_strand>
        <mrna_strand>GGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237011" ref_strand="+" ref_description="SGN-E237011 [cLEL-7-M17](-)">
      <seq>aatggggctgcagtgcattttagttctgtactttgtataatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctattttgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142223" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141923" g_stop="141574" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E237011" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141923" e_stop="141574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</genome_strand>
        <mrna_strand>AATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATAATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237417" ref_strand="+" ref_description="SGN-E237417 [cLEL-7-M17](-)">
      <seq>tcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctattttgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142183" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141883" g_stop="141574" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="328"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E237417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141883" e_stop="141574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</genome_strand>
        <mrna_strand>TCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236772" ref_strand="+" ref_description="SGN-E236772 [cLEL-7-B3](-)">
      <seq>catctttttgcatcccacgggacatgacgtaagtatatgtttagtaagtatactagttatgatctaatatgaagggatccaagtgacaccccttcagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142381" stop="141281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142081" g_stop="141588" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="512"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E236772" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142081" e_stop="141588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAAC</genome_strand>
        <mrna_strand>CATCTTTTTGCATCCCACGG-GACATGACGT-AAGTATATGTTTAGT-AAGTATACTAG-TTATGATCTA-ATATGAAGGGATCCAAGTGACACCCCTT-CAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398697" ref_strand="+" ref_description="SGN-E398697 [TUS-45-I7](-)">
      <seq>cccacggcgacatgacgtgaagtatatgtttagtgaagtatactagtttatgatctatatatgaagggatccaagtgacaccccttccagagcagaggagtccagcatgacagcgacagtatatcctggtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtattatcttttttgttccacttttcaaagttttcccattttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtttactttgaaaagagttgcgagcaaatttgaaatacagttgctctatgtgattatgatcaatcaaacgtatatattttgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142368" stop="141271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142068" g_stop="141588" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="506"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E398697" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142068" e_stop="141588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAAC</genome_strand>
        <mrna_strand>CCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTTTTCAAAGTTTTCCCATTTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTTTACTTTGAAAAGAGTTGCGAGCAAATTTGAAATACAGTTGCTCTATGTGATTATGATCAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236873" ref_strand="+" ref_description="SGN-E236873 [cLEL-7-B3](-)">
      <seq>cagcatgacagcgaccgtatatcctgtcgaaaaggacaatgtaatggggctgcagtgcattttagttctgtactttgtatatcttttttgttccactcttcaaagtcttcccatcttagtagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtaaattgaccagaaagcttccggggacacgtttgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtatttttttttcccgtaagtttatatctcacttcagtttgtatttagcagtctactttgaaaagagttgcgagcaaatttgtgttacagttgctctatgtgattatgatcaatcaaacgtatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142266" stop="141281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141966" g_stop="141588" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E236873" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141966" e_stop="141588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAAC</genome_strand>
        <mrna_strand>CAGCATGACAGCGACCGTATATCCT-GTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTAT-ATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405875" ref_strand="+" ref_description="SGN-E405875 [PPI-1-L4]">
      <seq>ggtgcctctccggacctggtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacggtgacatgacgtgaagtatatgtttagtaaaatatactagtttatgatctatatatgaagggatccaagttacaccccttccagagcagaggagtccagcatgacaagcgagacagtatctcctggtcgaaaaggacaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcatagtcttcctatcttagcagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtcttttttttccttaagttgatatgtcacttcagtttgtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142444" stop="141360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142144" g_stop="141660" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E405875" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142144" e_stop="141660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGC--GACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTA</genome_strand>
        <mrna_strand>GGTGCCTCTCCGGACCTGGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACGGTGACATGACGTGAAGTATATGTTTAGTAAAATATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAAGCGAGACAGTATCTCCTGGTCGAAAAGGACAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCATAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTCTTTTTTTTCCTTAAGTTGATATGTCACTTCAGTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420212" ref_strand="+" ref_description="SGN-E420212 [STM-30-L6]">
      <seq>ggtgcctctccggacctggtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacggtgacatgacgtgaagtatatgtttagtaaaatatactagtttatgatctatatatgaagggatccaagttacaccccttccagagcagaggagtccagcatgacaagcgagacagtatctcctggtcgaaaaggacaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcatagtcttcctatcttagcagccaactagtgaaaaggaaatatgtttttgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtcttttttttccttaagttgatatgtcacttcagtttgtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="142444" stop="141360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142144" g_stop="141660" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E420212" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142144" e_stop="141660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGC--GACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTA</genome_strand>
        <mrna_strand>GGTGCCTCTCCGGACCTGGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACGGTGACATGACGTGAAGTATATGTTTAGTAAAATATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAAGCGAGACAGTATCTCCTGGTCGAAAAGGACAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCATAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTCTTTTTTTTCCTTAAGTTGATATGTCACTTCAGTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420213" ref_strand="+" ref_description="SGN-E420213 [STM-30-L6]">
      <seq>cacttttttttaatacaaactgaagtgattatcaacttaaggaaaaaaaagacactgccctttcaagtcctggcaatccttttggagccttgcaacttgtccatacatattcaatcgtgtccccggaagctttctggtcaatatactactaacaaacatgtacaaaaacatatttccttttcactagttggctgctaagataggaagactatgaagagtggaacaaaaaagataatacaaagtacagaactaaaatgcactgcagcccattacattgtccttttcgaccaggagatactgtctcgcttgtcatgctggactcctctgctctggaaggggtgtaacttggatcccttcatatatagatcataaactagtatattttactaaacatatacttcacgtcatgtcaccgtgggatgcaaaaagatgcaggcccatctgcctttttatatggtctggtatcaacctgtttaccaggtccggagaggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="+" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="141393" stop="142444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141662" g_stop="142144" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="495" r_length="484" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="+" ref_id="SGN-E420213" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141662" e_stop="142144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAACTGAAGTGAGATATAAACTTACGGGAAAAAAAAATACTGCCCTTTCAAGTCCTGGCAATCCTTTTGGAGCCTTGCAACTTGTCCATACATATTCAAACGTGTCCCCGGAAGCTTTCTGGTCAATTTACTACTAACAAACATGTACAAAAACATATTTCCTTTTCACTAGTTGGCTACTAAGATGGGAAGACTTTGAAGAGTGGAACAAAAAAGATAATACAAAGTACAGAACTAAAATGCACTGCAGCCCCATTACATTGTCCTTTTCGACCAGGATATACTG--TCGC-TGTCATGCTGGACTCCTCTGCTCTGGAAGGGGTGTCACTTGGATCCCTTCATATATAGATCATAAACTAGTATACTTCACTAAACATATACTTCACGTCATGTCGCCGTGGGATGCAAAAAGATGCAGGCCCATCTGTCTTTTTATATGGTCTGGTATCAACCTGTTTACGAGGTCCGGAGAGGCACC</genome_strand>
        <mrna_strand>AATACAAACTGAAGTGAT-TATCAACTTAAGGAAAAAAAAGACACTGCCCTTTCAAGTCCTGGCAATCCTTTTGGAGCCTTGCAACTTGTCCATACATATTCAATCGTGTCCCCGGAAGCTTTCTGGTCAATATACTACTAACAAACATGTACAAAAACATATTTCCTTTTCACTAGTTGGCTGCTAAGATAGGAAGACTATGAAGAGTGGAACAAAAAAGATAATACAAAGTACAGAACTAAAATGCACTGCAG-CCCATTACATTGTCCTTTTCGACCAGGAGATACTGTCTCGCTTGTCATGCTGGACTCCTCTGCTCTGGAAGGGGTGTAACTTGGATCCCTTCATATATAGATCATAAACTAGTATATTTTACTAAACATATACTTCACGTCATGTCACCGTGGGATGCAAAAAGATGCAGGCCCATCTGCCTTTTTATATGGTCTGGTATCAACCTGTTTACCAGGTCCGGAGAGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560047" ref_strand="+" ref_description="SGN-E560047 [19640]">
      <seq>gcccattgccccctctcttcaattttaagcaggagttgtctggtgcctctccggactggtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacggtgacatgacgtngaagtatatttggntttagtaaaatatactagtttatgatctatatatgaagggatccaagttacaccccttccagagcagaggagtccagcatgacaagcgagacagntctcctggtcgaaaaggacnaatgtaatgggctgcagtgcattttagttctgtactttgtattatcttttttgttccactcttcatagtcttcctatcttagcagccaactagtgaaaaggaaatatgttttntgtacatgtttgttagtagtatattgaccagaaagcttccggggacacgattgaatatgtatggacaagttgcaaggctccaaaaggattgccaggacttgaaagggcagtgtcttttttttccttaagttgatatgtcacttcagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144107" stop="141393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143807" g_stop="143773" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142150" g_stop="141665" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="528" r_length="493" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E560047" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143807" e_stop="143773"/>
          <exon e_start="142150" e_stop="141665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGT-GAAGTATA--T-G-TTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGCGACA-GTATATCCTGGTCGAAAAGGAC-AATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTT-TGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGT</genome_strand>
        <mrna_strand>GCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGGTGCCTCTCCGGA-CTGGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACGGTGACATGACGTNGAAGTATATTTGGNTTTAGTAAAATATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAAGCGAGACAGNTCTCCTGGTCGAAAAGGACNAATGTAAT-GGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCATAGTCTTCCTATCTTAGCAGCCAACTAGTGAAAAGGAAATATGTTTTNTGTACATGTTTGTTAGTAGTATATTGACCAGAAAGCTTCCGGGGACACGATTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTGTCTTTTTTTTCCTTAAGTTGATATGTCACTTCAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405039" ref_strand="+" ref_description="SGN-E405039 [PPC-16-E4]">
      <seq>agtggcataaagttttccacaaacggatgcctcctgaagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacgccttcccaatggtcgcccattgccccctctcttcaattttaagcaagagttgtctggtgcctctccggacctggtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacggtgacatgacgtgaagtatatgtttagtaaaatatactagtttatgatctatatatgaagggatccaagttacaccccttccagagcagaagagtccagcatgacaagcgagacagtatctcctggtcgaaaaagacaatgtaatgggctgcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144495" stop="141651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144186" g_stop="144103" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="95" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141908" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="442" r_length="245" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E405039" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144186" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGC--GACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGC</genome_strand>
        <mrna_strand>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGCCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGGTGCCTCTCCGGACCTGGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACGGTGACATGACGTGAAGTATATGTTTAGTAAAATATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACACCCCTTCCAGAGCAGAAGAGTCCAGCATGACAAGCGAGACAGTATCTCCTGGTCGAAAAAGACAATGTAAT-GGGCTGCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420190" ref_strand="+" ref_description="SGN-E420190 [STM-30-J8]">
      <seq>aagcaattgaccttgcttctcggctactgcagtactcaccaagtctacgttgcactgcacttgaagcatgtgctcatcctttctttgatgaacttcgtgaaccaaatgcacgtcttcccaatggtcgcccattgccccctctcttcaattttaagcaggagttgtctggtgcctctccggaccttgtaaacaggttgataccagaccatataaaaaggcagatgggcctgcatctttttgcatcccacagtgacatgacgtgaagtatatgcttagtaaagtatactagtttatgatctatatatgaagggatccaagttacatccctccagagcagaggagtccagcataacaagcgacagtatctcctgntcgaaaaggacaatgtaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M05-Zfmzr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0111M05.1" temp_strand="-" temp_description="C02HBa0111M05.1  AC226506.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M05 sequenced_by:kribb upload_account_name:korea">
        <position start="144461" stop="141615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144161" g_stop="144103" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143874" g_stop="143773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="161" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142150" g_stop="141915" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="396" r_length="235" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M05.1" gen_strand="-" ref_id="SGN-E420190" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144161" e_stop="144103"/>
          <exon e_start="143874" e_stop="143773"/>
          <exon e_start="142150" e_stop="141915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCAGTAAGTTCAATTTTATTTTCCTGATGTAATTCGTTTAAACAACAGTTCCTGTAGCACGATTACCATGTCTCCATTCGGGGTGGCCATTTCTGTGGTCCTTTTTATGCTCCCACATCTCTGTGTTGTTTTTACTGATTTGTTACCATTGCTCAGCTCATTCATTGTCTTTTTGTTTATTGAACAGTGAATCTCTAAATCTATTCAATTAATACGCTTCTCATTTTGCAGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAGGTACGGCTTTCATGTGTTTATTCTTAAATTAAAGGTTGTACCATCCATGCTTCATTCTTCCGGATCTCAGCTGAAGAGCACTCCTGGGTAGTCACAGTAGGCATTCAATGTGATTAAATTCTTCAGATTACCCAAAGGCCAGAAGTCAGTTTGGTACTTAACGAAGATTTAGAATGATTGATTCCATCAACCCACTGGAAGGCGGAGACATTTTCTGATACCTTGTGGCTGGTAGTAATAGTTGATTATTGATCCAAGTCCATTGTGTGCACTGGAAAATGAATGCGAGCACATTCTTTTTCTAGAGCATGGATGCGTTATGCAATGAATTATCTTTATACAGGGCCTCATGTTTAAAGTTGGTGTTTTGGAATGGCAAGCTTGATGAGGGTAATGCAATCTAGCATGTCATAAGTTTATGCTTCTTAGAGATATTGCCGGCCACTGGTGTTGATACGACACGATGACATACTCATTCTGGATTTGGCAAAAAATAATGGTTCCCTGACTAAGGAAGGCATAATTGAGAGTACAACGAAGATGGAGATTGAGACAGAAAACAGAAGTAGAAAAGGGAGAAGAAACAAAAAGCCAGAAACTCACAGGCATCCTTATGTCTGATGATTGATAAAAGGATCTGCAGCCATTCGTCGAACTCAAAGAAGAGGGGGTCCATTGGTCATCAGAGTATTTCTGTTTCTTTTTTTGTTAGTAGCTGGGGTGGATTAGGCTTCTAAGAAATGGACTGAACCAATGCTTAATTGACCAAGAATAAGTTGGGCTACTATAACGTTAAGGTTTATACAACATAACAATACCACTGGATTTAATGGATTAATGGTGGTCCTTCTGTATTGTTCTTTGAAACAAGCCTTTGAGGTTCTTGTGATTTTATTAGAAAGTTATGTTAGAGGTTGGGTGAAAATCATTCTAGCTAAGAAGTTCTGATGATTAAATTAGTGTCAATAATGAGAACAAGTGGACTAGTCTAGTGGTGAGAAACATCTCTGGTGGACTGTGTCAGTATATTTATTGGGGTGGATTGACTCTGAGGTGTTTGAGATTACACCTTGACTACAGGAATGCCCTTTTTTCCAATACCATGATGTCAGATAACAGGATCTAACTAAGTGAGGTGCGTATATTGTTAAAGAAGCTATGCACTGTCACTGAGTCTTGATGAAAGAAGGCCCTTTCATCCTAGTTCCATATCTACTGAAAAGAGGGCCAGGGAGAAGCCTGAAGAGTTGAACTCCCTCGAAAAATAGTATCTTTGTAAGTTGCTGGGGCCTGGTTGAAAGACGCGATAATATGTATCTGTAAAGGATAACCTCATTATTCAGTTATCTTCATTCTTATTGGTTACGAAGGAGATATTAGTCACAACAGCATTTTAGTTACAAGGACGCGGAAAATTGTTAAAGCATGCATTTTTACGAAAAGCACAACTTAACTATGCATATCTTTGGCAGGAATTGCCATCTTCAATTGTCCATTAGAATTTAGAAGCATGTCAAGGCCATTAATATTGAAAAACTGTATTGCTATGAAGTTACGCATTCTGTACTTGCCTTTCTTGACTTAACTCTATTGCTTATCCCCCTAATTTTTCCTGGTTTCAGTTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGAC-AGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCT</genome_strand>
        <mrna_strand>AAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA....................................................................................................................................................................................................................................CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGTCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGGTGCCTCTCCGGACCTTGTAAACAGGTTGATACCAGACCATATAAAAAGGCAGATGGGCCTGCATCTTTTTGCATCCCACAGTGACATGACGTGAAGTATATGCTTAGTAAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTTACATCCC-TCCAGAGCAGAGGAGTCCAGCATAACAAGCGACAGTATCTCCTGNTCGAAAAGGACAATGTAAT-GGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>81</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1138" PGL_stop="1990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1138" e_stop="1990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1138" e_stop="1990" e_length="853"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1138" stop="1990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTGAAGCAGCAGACAAACATACTTGTTAATAAATTATCATATATTGAAAAAACTAATAAGAAAAAATTAATGGCAACTGATTCAAACAGCAGTGATCGCAAGGAAGAAGAATACGCAGAGTGTGCTTGGAAGAGTCTTCAACACGAAGAACTGACGGAACTTGAACATGCTGTAGGTCATGTCAATAACAATGAAAAAGATGAAGAAAAACTGAGACAACTGATAGAAAAAATCATAAAACACTTCCAAGAGCACTCTGAGAAGCGTCTCCATCTAGCCCGAAAAGACGTGTCCCCATTCTTCGCCCCCGCCTCGTGCTCTTCCTCGGAGAGTTCGGTCCTATGGATCGCTGGCTGTAGACCTTCTTCTTTCATTCGACTCATTATGCCCTCACCGAATTTGAACCTGACGCCAACGAAACTGATCCGTGTCTTGAGGGGATCGTAAGCAGGAAGCTCCGCGAACTAAGTGGGAAACAGTTGAGCATGGTTAACGATTTGCAAAGCAAGACGATTGCAGAAGAGAGGAGGATTTCGAATAAATTTGCTAGTTTACAAGAGGACATAGCGGATCAACGGCTTGTGGGGAAGATGAAAAAAGAGGGACATGGTTGTGAGAAAGCGGATGAAGCTTTGGATGAACATAGTAGACACATGGCGGATGTTATTGAAGAAGGTGATCGACTGAGGATGAAAACGTTGAAGGCAATAGTGAACCTACTTGAACCGGTTCAAGCGGTGGAGTACTTAACAGCAGCTAAGAAAATGAGGTTTTGTGTGCAACAATGGGGAGAGAAGAGGGATCAGCAGCATAAACAGTAGTAATCAATCTACTTCTTTTTAATTATTTT</gDNA_template>
            <first_frame> T  L  K  Q  Q  T  N  I  L  V  N  K  L  S  Y  I  E  K  T  N  K  K  K  L  M  A  T  D  S  N  S  S  D  R  K  E  E  E  Y  A  E  C  A  W  K  S  L  Q  H  E  E  L  T  E  L  E  H  A  V  G  H  V  N  N  N  E  K  D  E  E  K  L  R  Q  L  I  E  K  I  I  K  H  F  Q  E  H  S  E  K  R  L  H  L  A  R  K  D  V  S  P  F  F  A  P  A  S  C  S  S  S  E  S  S  V  L  W  I  A  G  C  R  P  S  S  F  I  R  L  I  M  P  S  P  N  L  N  L  T  P  T  K  L  I  R  V  L  R  G  S  *  A  G  S  S  A  N  *  V  G  N  S  *  A  W  L  T  I  C  K  A  R  R  L  Q  K  R  G  G  F  R  I  N  L  L  V  Y  K  R  T  *  R  I  N  G  L  W  G  R  *  K  K  R  D  M  V  V  R  K  R  M  K  L  W  M  N  I  V  D  T  W  R  M  L  L  K  K  V  I  D  *  G  *  K  R  *  R  Q  *  *  T  Y  L  N  R  F  K  R  W  S  T  *  Q  Q  L  R  K  *  G  F  V  C  N  N  G  E  R  R  G  I  S  S  I  N  S  S  N  Q  S  T  S  F  *  L  F  </first_frame>
            <second_frame>  H  *  S  S  R  Q  T  Y  L  L  I  N  Y  H  I  L  K  K  L  I  R  K  N  *  W  Q  L  I  Q  T  A  V  I  A  R  K  K  N  T  Q  S  V  L  G  R  V  F  N  T  K  N  *  R  N  L  N  M  L  *  V  M  S  I  T  M  K  K  M  K  K  N  *  D  N  *  *  K  K  S  *  N  T  S  K  S  T  L  R  S  V  S  I  *  P  E  K  T  C  P  H  S  S  P  P  P  R  A  L  P  R  R  V  R  S  Y  G  S  L  A  V  D  L  L  L  S  F  D  S  L  C  P  H  R  I  *  T  *  R  Q  R  N  *  S  V  S  *  G  D  R  K  Q  E  A  P  R  T  K  W  E  T  V  E  H  G  *  R  F  A  K  Q  D  D  C  R  R  E  E  D  F  E  *  I  C  *  F  T  R  G  H  S  G  S  T  A  C  G  E  D  E  K  R  G  T  W  L  *  E  S  G  *  S  F  G  *  T  *  *  T  H  G  G  C  Y  *  R  R  *  S  T  E  D  E  N  V  E  G  N  S  E  P  T  *  T  G  S  S  G  G  V  L  N  S  S  *  E  N  E  V  L  C  A  T  M  G  R  E  E  G  S  A  A  *  T  V  V  I  N  L  L  L  F  N  Y  F </second_frame>
            <third_frame>   T  E  A  A  D  K  H  T  C  *  *  I  I  I  Y  *  K  N  *  *  E  K  I  N  G  N  *  F  K  Q  Q  *  S  Q  G  R  R  I  R  R  V  C  L  E  E  S  S  T  R  R  T  D  G  T  *  T  C  C  R  S  C  Q  *  Q  *  K  R  *  R  K  T  E  T  T  D  R  K  N  H  K  T  L  P  R  A  L  *  E  A  S  P  S  S  P  K  R  R  V  P  I  L  R  P  R  L  V  L  F  L  G  E  F  G  P  M  D  R  W  L  *  T  F  F  F  H  S  T  H  Y  A  L  T  E  F  E  P  D  A  N  E  T  D  P  C  L  E  G  I  V  S  R  K  L  R  E  L  S  G  K  Q  L  S  M  V  N  D  L  Q  S  K  T  I  A  E  E  R  R  I  S  N  K  F  A  S  L  Q  E  D  I  A  D  Q  R  L  V  G  K  M  K  K  E  G  H  G  C  E  K  A  D  E  A  L  D  E  H  S  R  H  M  A  D  V  I  E  E  G  D  R  L  R  M  K  T  L  K  A  I  V  N  L  L  E  P  V  Q  A  V  E  Y  L  T  A  A  K  K  M  R  F  C  V  Q  Q  W  G  E  K  R  D  Q  Q  H  K  Q  *  *  S  I  Y  F  F  L  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1500" stop="1961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFFHSTHYALTEFEPDANETDPCLEGIVSRKLRELSGKQLSMVNDLQSKTIAEERRISNKFASLQEDIADQRLVGKMKKEGHGCEKADEALDEHSRHMADVIEEGDRLRMKTLKAIVNLLEPVQAVEYLTAAKKMRFCVQQWGEKRDQQHKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1138" stop="1587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLKQQTNILVNKLSYIEKTNKKKLMATDSNSSDRKEEEYAECAWKSLQHEELTELEHAVGHVNNNEKDEEKLRQLIEKIIKHFQEHSEKRLHLARKDVSPFFAPASCSSSESSVLWIAGCRPSSFIRLIMPSPNLNLTPTKLIRVLRGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2080" PGL_stop="1255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2080" e_stop="1255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="2080" e_stop="1255" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2080" stop="1255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGGCTTTATATTGAGGGTGCACTAACTTTAACCAGAAAAATTCACCCATACATGTTTTTTTTTTCCTTCCCATTTATTATCATAAAAAAAAATAATTAAAAAGAAGTAGATTGATTACTACTGTTTATGCTGCTGATCCCTCTTCTCTCCCCATTGTTGCACACAAAACCTCATTTTCTTAGCTGCTGTTAAGTACTCCACCGCTTGAACCGGTTCAAGTAGGTTCACTATTGCCTTCAACGTTTTCATCCTCAGTCGATCACCTTCTTCAATAACATCCGCCATGTGTCTACTATGTTCATCCAAAGCTTCATCCGCTTTCTCACAACCATGTCCCTCTTTTTTCATCTTCCCCACAAGCCGTTGATCCGCTATGTCCTCTTGTAAACTAGCAAATTTATTCGAAATCCTCCTCTCTTCTGCAATCGTCTTGCTTTGCAAATCGTTAACCATGCTCAACTGTTTCCCACTTAGTTCGCGGAGCTTCCTGCTTACGATCCCCTCAAGACACGGATCAGTTTCGTTGGCGTCAGGTTCAAATTCGGTGAGGGCATAATGAGTCGAATGAAAGAAGAAGGTCTACAGCCAGCGATCCATAGGACCGAACTCTCCGAGGAAGAGCACGAGGCGGGGGCGAAGAATGGGGACACGTCTTTTCGGGCTAGATGGAGACGCTTCTCAGAGTGCTCTTGGAAGTGTTTTATGATTTTTTCTATCAGTTGTCTCAGTTTTTCTTCATCTTTTTCATTGTTATTGACATGACCTACAGCATGTTCAAGTTCCGTCAGTTCTTCGTGTTGAAGACTCTTCCAAGCACACTCTGC</gDNA_template>
            <first_frame> H  G  F  I  L  R  V  H  *  L  *  P  E  K  F  T  H  T  C  F  F  F  P  S  H  L  L  S  *  K  K  I  I  K  K  K  *  I  D  Y  Y  C  L  C  C  *  S  L  F  S  P  H  C  C  T  Q  N  L  I  F  L  A  A  V  K  Y  S  T  A  *  T  G  S  S  R  F  T  I  A  F  N  V  F  I  L  S  R  S  P  S  S  I  T  S  A  M  C  L  L  C  S  S  K  A  S  S  A  F  S  Q  P  C  P  S  F  F  I  F  P  T  S  R  *  S  A  M  S  S  C  K  L  A  N  L  F  E  I  L  L  S  S  A  I  V  L  L  C  K  S  L  T  M  L  N  C  F  P  L  S  S  R  S  F  L  L  T  I  P  S  R  H  G  S  V  S  L  A  S  G  S  N  S  V  R  A  *  *  V  E  *  K  K  K  V  Y  S  Q  R  S  I  G  P  N  S  P  R  K  S  T  R  R  G  R  R  M  G  T  R  L  F  G  L  D  G  D  A  S  Q  S  A  L  G  S  V  L  *  F  F  L  S  V  V  S  V  F  L  H  L  F  H  C  Y  *  H  D  L  Q  H  V  Q  V  P  S  V  L  R  V  E  D  S  S  K  H  T  L  </first_frame>
            <second_frame>  M  A  L  Y  *  G  C  T  N  F  N  Q  K  N  S  P  I  H  V  F  F  F  L  P  I  Y  Y  H  K  K  K  *  L  K  R  S  R  L  I  T  T  V  Y  A  A  D  P  S  S  L  P  I  V  A  H  K  T  S  F  S  *  L  L  L  S  T  P  P  L  E  P  V  Q  V  G  S  L  L  P  S  T  F  S  S  S  V  D  H  L  L  Q  *  H  P  P  C  V  Y  Y  V  H  P  K  L  H  P  L  S  H  N  H  V  P  L  F  S  S  S  P  Q  A  V  D  P  L  C  P  L  V  N  *  Q  I  Y  S  K  S  S  S  L  L  Q  S  S  C  F  A  N  R  *  P  C  S  T  V  S  H  L  V  R  G  A  S  C  L  R  S  P  Q  D  T  D  Q  F  R  W  R  Q  V  Q  I  R  *  G  H  N  E  S  N  E  R  R  R  S  T  A  S  D  P  *  D  R  T  L  R  G  R  A  R  G  G  G  E  E  W  G  H  V  F  S  G  *  M  E  T  L  L  R  V  L  L  E  V  F  Y  D  F  F  Y  Q  L  S  Q  F  F  F  I  F  F  I  V  I  D  M  T  Y  S  M  F  K  F  R  Q  F  F  V  L  K  T  L  P  S  T  L  C </second_frame>
            <third_frame>   W  L  Y  I  E  G  A  L  T  L  T  R  K  I  H  P  Y  M  F  F  F  S  F  P  F  I  I  I  K  K  N  N  *  K  E  V  D  *  L  L  L  F  M  L  L  I  P  L  L  S  P  L  L  H  T  K  P  H  F  L  S  C  C  *  V  L  H  R  L  N  R  F  K  *  V  H  Y  C  L  Q  R  F  H  P  Q  S  I  T  F  F  N  N  I  R  H  V  S  T  M  F  I  Q  S  F  I  R  F  L  T  T  M  S  L  F  F  H  L  P  H  K  P  L  I  R  Y  V  L  L  *  T  S  K  F  I  R  N  P  P  L  F  C  N  R  L  A  L  Q  I  V  N  H  A  Q  L  F  P  T  *  F  A  E  L  P  A  Y  D  P  L  K  T  R  I  S  F  V  G  V  R  F  K  F  G  E  G  I  M  S  R  M  K  E  E  G  L  Q  P  A  I  H  R  T  E  L  S  E  E  E  H  E  A  G  A  K  N  G  D  T  S  F  R  A  R  W  R  R  F  S  E  C  S  W  K  C  F  M  I  F  S  I  S  C  L  S  F  S  S  S  F  S  L  L  L  T  *  P  T  A  C  S  S  S  V  S  S  S  C  *  R  L  F  Q  A  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1604" stop="1317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAELPAYDPLKTRISFVGVRFKFGEGIMSRMKEEGLQPAIHRTELSEEEHEAGAKNGDTSFRARWRRFSECSWKCFMIFSISCLSFSSSFSLLLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="3619" PGL_stop="4362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3619" e_stop="4233"/>
            <exon e_start="4309" e_stop="4362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="0.939" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3619" e_stop="4233" e_length="615"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="0.939">
            <gDNA_intron_boundary i_start="4234" i_stop="4308" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4309" e_stop="4362" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3619" stop="4027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3619" stop="4014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3619" stop="3981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3808" stop="4233"/>
              <exon start="4309" stop="4362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAATATTCCAAATCTTTCAACAAAACAAAAAGGGCTCCTTAATCTCCATGCAATAACAACTACGCCTCTGTTCCAAACAGATTACGATTACAATGGCAATGAATCCTCAACAAAATTAAAAAGAAAAAATAATTTGTCTCAATTGTATTGCCAATTTCTTCTTCAGGATGACTTCGAAGAACGATAAGAAAGGCAATATTTTGATGCAAAGGTATGAGATTGGGAAATTGCTTGGGCAGGGTACATTTGCAAAAGTATACCATGCTAGAAATCTCAAAACAGGGCAAAGTGTTGCTATTAAGGTGATTGACAAAGAGAAGATTATGAAGGTTGGGTTAATTGATCAAACGAAACGTGAAATCTCCGTCATGAGGCTAATCAAACACCCAAATATTGTCCAGCTCTATGAGGTTATGGCGAGCAAAACAAAAATATATTTTGCTATGGAATATGTTAGAGGTGGTGAACTTTTCAATAAGGTTGCTAAAGGCAGACTTAAAGAAGATGCTGCAAGAAAATACTTTCAACAGTTAATCGCTGCAGTCGATTTCTGTCATAGCCGTGATGTCTACCACCGTGATCTCAAGCCTGAAAATCTCCTCCTTGACGAAG : GTGGCAATCTGAAAGTCTCGGATTTTGGTCTGAGTGCATTGTTTGATTCGAAAA</gDNA_template>
            <first_frame> H  Q  Y  S  K  S  F  N  K  T  K  R  A  P  *  S  P  C  N  N  N  Y  A  S  V  P  N  R  L  R  L  Q  W  Q  *  I  L  N  K  I  K  K  K  K  *  F  V  S  I  V  L  P  I  S  S  S  G  *  L  R  R  T  I  R  K  A  I  F  *  C  K  G  M  R  L  G  N  C  L  G  R  V  H  L  Q  K  Y  T  M  L  E  I  S  K  Q  G  K  V  L  L  L  R  *  L  T  K  R  R  L  *  R  L  G  *  L  I  K  R  N  V  K  S  P  S  *  G  *  S  N  T  Q  I  L  S  S  S  M  R  L  W  R  A  K  Q  K  Y  I  L  L  W  N  M  L  E  V  V  N  F  S  I  R  L  L  K  A  D  L  K  K  M  L  Q  E  N  T  F  N  S  *  S  L  Q  S  I  S  V  I  A  V  M  S  T  T  V  I  S  S  L  K  I  S  S  L  T  K  :  V  A  I  *  K  S  R  I  L  V  *  V  H  C  L  I  R  K </first_frame>
            <second_frame>  I  N  I  P  N  L  S  T  K  Q  K  G  L  L  N  L  H  A  I  T  T  T  P  L  F  Q  T  D  Y  D  Y  N  G  N  E  S  S  T  K  L  K  R  K  N  N  L  S  Q  L  Y  C  Q  F  L  L  Q  D  D  F  E  E  R  *  E  R  Q  Y  F  D  A  K  V  *  D  W  E  I  A  W  A  G  Y  I  C  K  S  I  P  C  *  K  S  Q  N  R  A  K  C  C  Y  *  G  D  *  Q  R  E  D  Y  E  G  W  V  N  *  S  N  E  T  *  N  L  R  H  E  A  N  Q  T  P  K  Y  C  P  A  L  *  G  Y  G  E  Q  N  K  N  I  F  C  Y  G  I  C  *  R  W  *  T  F  Q  *  G  C  *  R  Q  T  *  R  R  C  C  K  K  I  L  S  T  V  N  R  C  S  R  F  L  S  *  P  *  C  L  P  P  *  S  Q  A  *  K  S  P  P  *  R  R :   W  Q  S  E  S  L  G  F  W  S  E  C  I  V  *  F  E   </second_frame>
            <third_frame>   S  I  F  Q  I  F  Q  Q  N  K  K  G  S  L  I  S  M  Q  *  Q  L  R  L  C  S  K  Q  I  T  I  T  M  A  M  N  P  Q  Q  N  *  K  E  K  I  I  C  L  N  C  I  A  N  F  F  F  R  M  T  S  K  N  D  K  K  G  N  I  L  M  Q  R  Y  E  I  G  K  L  L  G  Q  G  T  F  A  K  V  Y  H  A  R  N  L  K  T  G  Q  S  V  A  I  K  V  I  D  K  E  K  I  M  K  V  G  L  I  D  Q  T  K  R  E  I  S  V  M  R  L  I  K  H  P  N  I  V  Q  L  Y  E  V  M  A  S  K  T  K  I  Y  F  A  M  E  Y  V  R  G  G  E  L  F  N  K  V  A  K  G  R  L  K  E  D  A  A  R  K  Y  F  Q  Q  L  I  A  A  V  D  F  C  H  S  R  D  V  Y  H  R  D  L  K  P  E  N  L  L  L  D  E   : G  G  N  L  K  V  S  D  F  G  L  S  A  L  F  D  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3741" stop="4233"/>
                    <exon start="4309" stop="4361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKIICLNCIANFFFRMTSKNDKKGNILMQRYEIGKLLGQGTFAKVYHARNLKTGQSVAIKVIDKEKIMKVGLIDQTKREISVMRLIKHPNIVQLYEVMASKTKIYFAMEYVRGGELFNKVAKGRLKEDAARKYFQQLIAAVDFCHSRDVYHRDLKPENLLLDEGGNLKVSDFGLSALFDSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14546" PGL_stop="11732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14546" e_stop="14226"/>
            <exon e_start="11879" e_stop="11732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="0.969"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="14546" e_stop="14226" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14225" i_stop="11880" i_length="2346"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="11879" e_stop="11732" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14546" stop="14226"/>
              <exon start="11879" stop="11732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCCAAGATCATAAATAAGTTGGAGGAAATTGCTAAAGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGAGAGTTGTTGAAGTGAAGAAGAAAGGAGGAGATAGCTTGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTTGGATACCCTGTTAATTCATCGTATTTGCCATCAGATACTGAATAAAGAGAGAGAAGGGGAAAGG : GTAACTGCGGACATCTTAGGGACCAGTTGGAGGCTTCTTGCACTCAAACGGAGATCTCCTGAATACCAAAAAGAAGGAACACATGCCAAGCTAGACTGATGGAGCTTCATGCTAGTGAACCTTGACATGAGTTGATGTTCGTAATCAA</gDNA_template>
            <first_frame> C  P  R  S  *  I  S  W  R  K  L  L  K  L  *  A  L  Q  *  G  R  R  I  V  K  *  V  W  R  G  L  R  K  V  Q  R  G  R  *  Q  L  Q  L  R  Y  L  S  *  H  H  R  *  E  L  L  K  *  R  R  K  E  E  I  A  W  S  M  R  S  F  T  T  G  N  *  S  Q  D  Y  R  I  *  H  M  K  L  D  T  L  L  I  H  R  I  C  H  Q  I  L  N  K  E  R  E  G  E  R  :  V  T  A  D  I  L  G  T  S  W  R  L  L  A  L  K  R  R  S  P  E  Y  Q  K  E  G  T  H  A  K  L  D  *  W  S  F  M  L  V  N  L  D  M  S  *  C  S  *  S  </first_frame>
            <second_frame>  A  Q  D  H  K  *  V  G  G  N  C  *  S  C  E  L  C  S  K  E  E  G  L  *  S  E  Y  G  G  V  *  G  R  C  K  G  A  V  D  S  C  S  *  D  I  *  V  D  T  I  V  E  S  C  *  S  E  E  E  R  R  R  *  L  G  V  *  G  V  L  Q  Q  G  I  E  A  R  I  T  E  F  S  T  *  S  W  I  P  C  *  F  I  V  F  A  I  R  Y  *  I  K  R  E  K  G  K  G :   *  L  R  T  S  *  G  P  V  G  G  F  L  H  S  N  G  D  L  L  N  T  K  K  K  E  H  M  P  S  *  T  D  G  A  S  C  *  *  T  L  T  *  V  D  V  R  N  Q </second_frame>
            <third_frame>   P  K  I  I  N  K  L  E  E  I  A  K  V  V  S  F  A  V  R  K  K  D  C  K  V  S  M  E  G  S  K  E  G  A  K  G  P  L  T  V  A  A  E  I  F  E  L  T  P  S  L  R  V  V  E  V  K  K  K  G  G  D  S  L  E  Y  E  E  F  Y  N  R  E  L  K  P  G  L  Q  N  L  A  H  E  V  G  Y  P  V  N  S  S  Y  L  P  S  D  T  E  *  R  E  R  R  G  K   : G  N  C  G  H  L  R  D  Q  L  E  A  S  C  T  Q  T  E  I  S  *  I  P  K  R  R  N  T  C  Q  A  R  L  M  E  L  H  A  S  E  P  *  H  E  L  M  F  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14544" stop="14245"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIINKLEEIAKVVSFAVRKKDCKVSMEGSKEGAKGPLTVAAEIFELTPSLRVVEVKKKGGDSLEYEEFYNRELKPGLQNLAHEVGYPVNSSYLPSDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14541" e_stop="13989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14541" e_stop="13989" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14541" stop="13989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATCATAAATAAGTTGGAGGAAATTGCTAAAGTTGTGAGCTTTGCAGTAAGGAAGAAGGATTGTAAAGTGAGTATGGAGGGGTCTAAGGAAGGTGCAAAGGGGCCGTTGACAGTTGCAGCTGAGATATTTGAGTTGACACCATCGTTGAGAGTTGTTGAAGTGAAGAAGAAAGGAGGAGATAGCTTGGAGTATGAGGAGTTTTACAACAGGGAATTGAAGCCAGGATTACAGAATTTAGCACATGAAGTTGGATACCCTGTTAATTCATCGTATTTGCCATCAGATACTGAATAAAGAGAGAGAAGGGGAAAGGGTAAGCTCTTTTCTCCTCCCTTTTTATATCGTAGGTGCATTTGAATAGGTAGCACTTTGTGTTCTTTGCACTTTTGCATCTGTTATTAGCTCATGTTCAAAGCTTGTCAGATCTTGTAATTTCGGTTCTTGTTATGGGATGTTATATAAAATTATCTAAAAAATGAACACATCAGTGTCTCGAAATCGGCTCGTTTCTCAATTTTCTTTTATTTTCTGTTTCTAGTAATATTCTAAC</gDNA_template>
            <first_frame> K  I  I  N  K  L  E  E  I  A  K  V  V  S  F  A  V  R  K  K  D  C  K  V  S  M  E  G  S  K  E  G  A  K  G  P  L  T  V  A  A  E  I  F  E  L  T  P  S  L  R  V  V  E  V  K  K  K  G  G  D  S  L  E  Y  E  E  F  Y  N  R  E  L  K  P  G  L  Q  N  L  A  H  E  V  G  Y  P  V  N  S  S  Y  L  P  S  D  T  E  *  R  E  R  R  G  K  G  K  L  F  S  P  P  F  L  Y  R  R  C  I  *  I  G  S  T  L  C  S  L  H  F  C  I  C  Y  *  L  M  F  K  A  C  Q  I  L  *  F  R  F  L  L  W  D  V  I  *  N  Y  L  K  N  E  H  I  S  V  S  K  S  A  R  F  S  I  F  F  Y  F  L  F  L  V  I  F  *  </first_frame>
            <second_frame>  R  S  *  I  S  W  R  K  L  L  K  L  *  A  L  Q  *  G  R  R  I  V  K  *  V  W  R  G  L  R  K  V  Q  R  G  R  *  Q  L  Q  L  R  Y  L  S  *  H  H  R  *  E  L  L  K  *  R  R  K  E  E  I  A  W  S  M  R  S  F  T  T  G  N  *  S  Q  D  Y  R  I  *  H  M  K  L  D  T  L  L  I  H  R  I  C  H  Q  I  L  N  K  E  R  E  G  E  R  V  S  S  F  L  L  P  F  Y  I  V  G  A  F  E  *  V  A  L  C  V  L  C  T  F  A  S  V  I  S  S  C  S  K  L  V  R  S  C  N  F  G  S  C  Y  G  M  L  Y  K  I  I  *  K  M  N  T  S  V  S  R  N  R  L  V  S  Q  F  S  F  I  F  C  F  *  *  Y  S  N </second_frame>
            <third_frame>   D  H  K  *  V  G  G  N  C  *  S  C  E  L  C  S  K  E  E  G  L  *  S  E  Y  G  G  V  *  G  R  C  K  G  A  V  D  S  C  S  *  D  I  *  V  D  T  I  V  E  S  C  *  S  E  E  E  R  R  R  *  L  G  V  *  G  V  L  Q  Q  G  I  E  A  R  I  T  E  F  S  T  *  S  W  I  P  C  *  F  I  V  F  A  I  R  Y  *  I  K  R  E  K  G  K  G  *  A  L  F  S  S  L  F  I  S  *  V  H  L  N  R  *  H  F  V  F  F  A  L  L  H  L  L  L  A  H  V  Q  S  L  S  D  L  V  I  S  V  L  V  M  G  C  Y  I  K  L  S  K  K  *  T  H  Q  C  L  E  I  G  S  F  L  N  F  L  L  F  S  V  S  S  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14541" stop="14245"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIINKLEEIAKVVSFAVRKKDCKVSMEGSKEGAKGPLTVAAEIFELTPSLRVVEVKKKGGDSLEYEEFYNRELKPGLQNLAHEVGYPVNSSYLPSDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16009" PGL_stop="15244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16009" e_stop="15244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="16009" e_stop="15244" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16009" stop="15331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16009" stop="15429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15941" stop="15244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAAACCTAAAAATAGCTCAATAACACATCAACATCTCCAACTACACGACAGCCCACCATTTCGATGGCAATTTCTCCTCAAAATAACCATTATTTAGGATGACTCTCAACTAATCTTATTGATCTTTTTTGGCCTTCCCTTTCCCCCTTTTTTCGCAAATCTTCAAACGACCCTTTCGATATTTTACCGCTTTTCTTTTTTGCAAAATTTTGAATTACTCATCTGGTATTTTGGCTTTTTGATCACAATTTGGAAACACCCATTTGATAAAGTTTGGTTCTTTTAGGAAATAATTCAACTATACGGTTAAAAGTTTGCTGAATCCATGGCCGGCATCGCTACCGCCGGCGACACCAGCACCAGTACCAGCAGCAACCTAGCGCCGACGAGGAGTTTGAGCAAGAAGGAAAATCAGGGGCTTCTGTTGGGCAGGTATGAGATTGGGAAATTACTAGGACATGGTACTTTTGCTAAGGTGTACCATGCTAGAAATGTGAAGACGAATGAGAGCGTAGCGATTAAGGTGATTGATAAAGAGAAGATCTTGAAAGTGGGTCTTATTGATCACATAAAACGTGAGATCTCAATTCTCAAGAGAGTTAGGCATCCAAATATAGTTGAATTATACGAAGTTATGGCTACCAAAGCCAAAATCTTCTTTGTCATGGAGTATGTCAAAGGCGGTGAGCTCTTCAATAAGGTTGCCAAAGGCAGGCTTAAGGAAGAAGTTGCTCGGAAATATTTCCAGCAGTTAATTTCTGCT</gDNA_template>
            <first_frame> L  Q  T  *  K  *  L  N  N  T  S  T  S  P  T  T  R  Q  P  T  I  S  M  A  I  S  P  Q  N  N  H  Y  L  G  *  L  S  T  N  L  I  D  L  F  W  P  S  L  S  P  F  F  R  K  S  S  N  D  P  F  D  I  L  P  L  F  F  F  A  K  F  *  I  T  H  L  V  F  W  L  F  D  H  N  L  E  T  P  I  *  *  S  L  V  L  L  G  N  N  S  T  I  R  L  K  V  C  *  I  H  G  R  H  R  Y  R  R  R  H  Q  H  Q  Y  Q  Q  Q  P  S  A  D  E  E  F  E  Q  E  G  K  S  G  A  S  V  G  Q  V  *  D  W  E  I  T  R  T  W  Y  F  C  *  G  V  P  C  *  K  C  E  D  E  *  E  R  S  D  *  G  D  *  *  R  E  D  L  E  S  G  S  Y  *  S  H  K  T  *  D  L  N  S  Q  E  S  *  A  S  K  Y  S  *  I  I  R  S  Y  G  Y  Q  S  Q  N  L  L  C  H  G  V  C  Q  R  R  *  A  L  Q  *  G  C  Q  R  Q  A  *  G  R  S  C  S  E  I  F  P  A  V  N  F  C  </first_frame>
            <second_frame>  F  K  P  K  N  S  S  I  T  H  Q  H  L  Q  L  H  D  S  P  P  F  R  W  Q  F  L  L  K  I  T  I  I  *  D  D  S  Q  L  I  L  L  I  F  F  G  L  P  F  P  P  F  F  A  N  L  Q  T  T  L  S  I  F  Y  R  F  S  F  L  Q  N  F  E  L  L  I  W  Y  F  G  F  L  I  T  I  W  K  H  P  F  D  K  V  W  F  F  *  E  I  I  Q  L  Y  G  *  K  F  A  E  S  M  A  G  I  A  T  A  G  D  T  S  T  S  T  S  S  N  L  A  P  T  R  S  L  S  K  K  E  N  Q  G  L  L  L  G  R  Y  E  I  G  K  L  L  G  H  G  T  F  A  K  V  Y  H  A  R  N  V  K  T  N  E  S  V  A  I  K  V  I  D  K  E  K  I  L  K  V  G  L  I  D  H  I  K  R  E  I  S  I  L  K  R  V  R  H  P  N  I  V  E  L  Y  E  V  M  A  T  K  A  K  I  F  F  V  M  E  Y  V  K  G  G  E  L  F  N  K  V  A  K  G  R  L  K  E  E  V  A  R  K  Y  F  Q  Q  L  I  S  A </second_frame>
            <third_frame>   S  N  L  K  I  A  Q  *  H  I  N  I  S  N  Y  T  T  A  H  H  F  D  G  N  F  S  S  K  *  P  L  F  R  M  T  L  N  *  S  Y  *  S  F  L  A  F  P  F  P  L  F  S  Q  I  F  K  R  P  F  R  Y  F  T  A  F  L  F  C  K  I  L  N  Y  S  S  G  I  L  A  F  *  S  Q  F  G  N  T  H  L  I  K  F  G  S  F  R  K  *  F  N  Y  T  V  K  S  L  L  N  P  W  P  A  S  L  P  P  A  T  P  A  P  V  P  A  A  T  *  R  R  R  G  V  *  A  R  R  K  I  R  G  F  C  W  A  G  M  R  L  G  N  Y  *  D  M  V  L  L  L  R  C  T  M  L  E  M  *  R  R  M  R  A  *  R  L  R  *  L  I  K  R  R  S  *  K  W  V  L  L  I  T  *  N  V  R  S  Q  F  S  R  E  L  G  I  Q  I  *  L  N  Y  T  K  L  W  L  P  K  P  K  S  S  L  S  W  S  M  S  K  A  V  S  S  S  I  R  L  P  K  A  G  L  R  K  K  L  L  G  N  I  S  S  S  *  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15696" stop="15244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFAESMAGIATAGDTSTSTSSNLAPTRSLSKKENQGLLLGRYEIGKLLGHGTFAKVYHARNVKTNESVAIKVIDKEKILKVGLIDHIKREISILKRVRHPNIVELYEVMATKAKIFFVMEYVKGGELFNKVAKGRLKEEVARKYFQQLISA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28810" PGL_stop="29717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28810" e_stop="29717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28810" e_stop="29717" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28810" stop="29314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29106" stop="29717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCTCTCCATATATAAATAAAACCAATTGTATTGGTCTTATTTACCTCCACTTGAATTCATCTACTCTTATCAACTCTATATGGCATTTACATCAACTACTATCAACTGAAAGAAACAATCTCAATTCCCACAGAACAAAAAATGAAAATCCTCTTCACACTCTTTATCTTCCTTTCTCTTTTCACATTCTCAAAATCAGAATCCCCTTGCAGAAACAACACAGATGTTGATTCATCTCTTGTTTTCAAGGCTTTCAGTTCTGTTTATGGCTTCAACATCTCTTGGTTCAGCTCAAACTGTTCCTCTCCAATAACTGAAATTAACTTATCTTCAAGAAACCTCACTGGCATAGTCTCATGGAAGTACTTGAAAAATTTGTCCCATCTTCATTCTATAGATCTATCAAATAATTCCTTAAAGGGTTCTGTTCATCCTCTGTTTTGGTCCATTTCATCTTTGGTTCAAGTCAATTTGTCAAAGAATAAGCTTGGTGGAGCTGTTGCTGTAGCAAGATCATCATCATCTATTCAAAGACTTGATCTTTCTTTCAACAGGTTTACTAACTTAGGCTCTGTTTTTTATGGTTTTCCTAATCTCACTTCTCTTGACCTTTCACATAATGATATCAAGTTTTTGCCTTTTTGGTTTACCAACCTAACTAAGCTTGAAAATTTGAGCATTTCTAGCTGTAACATTTATGGCAATCCAAAACCCCTTTCACATATCAAGTCACTGAAGCATTTAGATGTTTCTGTCAACCATATGGATGGTAAATTACCTAATGATTTTCCTCCTCTGTCTAGTCTCAATTTCTTGAATATTTCATTCAATAACTTCACTGGGGAAATACCTAAAGACCAGTTTGCTAAATTTGGGAATTCTTCTTTCTTTCATGCTGGGCAC</gDNA_template>
            <first_frame> F  S  L  S  I  Y  K  *  N  Q  L  Y  W  S  Y  L  P  P  L  E  F  I  Y  S  Y  Q  L  Y  M  A  F  T  S  T  T  I  N  *  K  K  Q  S  Q  F  P  Q  N  K  K  *  K  S  S  S  H  S  L  S  S  F  L  F  S  H  S  Q  N  Q  N  P  L  A  E  T  T  Q  M  L  I  H  L  L  F  S  R  L  S  V  L  F  M  A  S  T  S  L  G  S  A  Q  T  V  P  L  Q  *  L  K  L  T  Y  L  Q  E  T  S  L  A  *  S  H  G  S  T  *  K  I  C  P  I  F  I  L  *  I  Y  Q  I  I  P  *  R  V  L  F  I  L  C  F  G  P  F  H  L  W  F  K  S  I  C  Q  R  I  S  L  V  E  L  L  L  *  Q  D  H  H  H  L  F  K  D  L  I  F  L  S  T  G  L  L  T  *  A  L  F  F  M  V  F  L  I  S  L  L  L  T  F  H  I  M  I  S  S  F  C  L  F  G  L  P  T  *  L  S  L  K  I  *  A  F  L  A  V  T  F  M  A  I  Q  N  P  F  H  I  S  S  H  *  S  I  *  M  F  L  S  T  I  W  M  V  N  Y  L  M  I  F  L  L  C  L  V  S  I  S  *  I  F  H  S  I  T  S  L  G  K  Y  L  K  T  S  L  L  N  L  G  I  L  L  S  F  M  L  G   </first_frame>
            <second_frame>  F  L  S  P  Y  I  N  K  T  N  C  I  G  L  I  Y  L  H  L  N  S  S  T  L  I  N  S  I  W  H  L  H  Q  L  L  S  T  E  R  N  N  L  N  S  H  R  T  K  N  E  N  P  L  H  T  L  Y  L  P  F  S  F  H  I  L  K  I  R  I  P  L  Q  K  Q  H  R  C  *  F  I  S  C  F  Q  G  F  Q  F  C  L  W  L  Q  H  L  L  V  Q  L  K  L  F  L  S  N  N  *  N  *  L  I  F  K  K  P  H  W  H  S  L  M  E  V  L  E  K  F  V  P  S  S  F  Y  R  S  I  K  *  F  L  K  G  F  C  S  S  S  V  L  V  H  F  I  F  G  S  S  Q  F  V  K  E  *  A  W  W  S  C  C  C  S  K  I  I  I  I  Y  S  K  T  *  S  F  F  Q  Q  V  Y  *  L  R  L  C  F  L  W  F  S  *  S  H  F  S  *  P  F  T  *  *  Y  Q  V  F  A  F  L  V  Y  Q  P  N  *  A  *  K  F  E  H  F  *  L  *  H  L  W  Q  S  K  T  P  F  T  Y  Q  V  T  E  A  F  R  C  F  C  Q  P  Y  G  W  *  I  T  *  *  F  S  S  S  V  *  S  Q  F  L  E  Y  F  I  Q  *  L  H  W  G  N  T  *  R  P  V  C  *  I  W  E  F  F  F  L  S  C  W  A  </second_frame>
            <third_frame>   F  S  L  H  I  *  I  K  P  I  V  L  V  L  F  T  S  T  *  I  H  L  L  L  S  T  L  Y  G  I  Y  I  N  Y  Y  Q  L  K  E  T  I  S  I  P  T  E  Q  K  M  K  I  L  F  T  L  F  I  F  L  S  L  F  T  F  S  K  S  E  S  P  C  R  N  N  T  D  V  D  S  S  L  V  F  K  A  F  S  S  V  Y  G  F  N  I  S  W  F  S  S  N  C  S  S  P  I  T  E  I  N  L  S  S  R  N  L  T  G  I  V  S  W  K  Y  L  K  N  L  S  H  L  H  S  I  D  L  S  N  N  S  L  K  G  S  V  H  P  L  F  W  S  I  S  S  L  V  Q  V  N  L  S  K  N  K  L  G  G  A  V  A  V  A  R  S  S  S  S  I  Q  R  L  D  L  S  F  N  R  F  T  N  L  G  S  V  F  Y  G  F  P  N  L  T  S  L  D  L  S  H  N  D  I  K  F  L  P  F  W  F  T  N  L  T  K  L  E  N  L  S  I  S  S  C  N  I  Y  G  N  P  K  P  L  S  H  I  K  S  L  K  H  L  D  V  S  V  N  H  M  D  G  K  L  P  N  D  F  P  P  L  S  S  L  N  F  L  N  I  S  F  N  N  F  T  G  E  I  P  K  D  Q  F  A  K  F  G  N  S  S  F  F  H  A  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28869" stop="29717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHLLLSTLYGIYINYYQLKETISIPTEQKMKILFTLFIFLSLFTFSKSESPCRNNTDVDSSLVFKAFSSVYGFNISWFSSNCSSPITEINLSSRNLTGIVSWKYLKNLSHLHSIDLSNNSLKGSVHPLFWSISSLVQVNLSKNKLGGAVAVARSSSSIQRLDLSFNRFTNLGSVFYGFPNLTSLDLSHNDIKFLPFWFTNLTKLENLSISSCNIYGNPKPLSHIKSLKHLDVSVNHMDGKLPNDFPPLSSLNFLNISFNNFTGEIPKDQFAKFGNSSFFHAGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29758" PGL_stop="31255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29758" e_stop="30369"/>
            <exon e_start="31072" e_stop="31255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.954"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="29758" e_stop="30369" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30370" i_stop="31071" i_length="702"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="31072" e_stop="31255" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29758" stop="30369"/>
              <exon start="31072" stop="31255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29829" stop="30369"/>
              <exon start="31072" stop="31248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGTTACGCATTAAAAATCATAACTTTACAACCCCAACACACAAGAAAATGTTGCCTTTGAGACACAAACCTGTCAAACCAAACACACACAAGAAAGAGCCCAAATCAAGAAAGAAAGTTTTAACCGTAGCTCTTTCCTCTGCTTCAGCATTTCTAATCTTGGTCATGGGGTTAGTCATATTGTGTCTATACAAAAGGAAAAAACAAATGGCTAGGAAGAACAAATGGCTAATATCAAAGCCAATACAGATACCGTTTAGAATGGACAAATCAGGGCCATTTTCATTTGAAACAGAGTCAGGCAATTCATGGGTTGCTGACATAAAAGAACCAAGTTCAGCAGGTGTAGTTATGTTTGAGAAGCCATTGATGAACCTAACATTCAAAGACCTGATAGCAGCCACATCTCACTTCGGAAAAGAGTCATTGTTAGCTGAAGGAAGGTGTGGGCCCGTTTACAGAGCCGTACTTCCAGGCGACCTCCACGTGGCAATCAAGGTCTTGGAACATGCTAGGGAACTAAGCCATGATGATGCTATTGCCTTGTTTGAACAACTCTCCAGGATTAAGCATCCTAATCTGTTGCCTATTTCTGGTTACTGCATTGCAG : GGAAAGAGAAGCTAGTCTTATACGAATTCATGTCCAATGGTGACCTCCACCGATGGCTACACGAGCTTCCAACTGCTACCACCAACGTGGAAGACTGGACAACCGACACGTGGGAGTTACAAAACGGGTCCCAAATTACATCACCCGGGAAAATGGAATGGCACACGCGCCACCGTATTGCGGT</gDNA_template>
            <first_frame> H  S  Y  A  L  K  I  I  T  L  Q  P  Q  H  T  R  K  C  C  L  *  D  T  N  L  S  N  Q  T  H  T  R  K  S  P  N  Q  E  R  K  F  *  P  *  L  F  P  L  L  Q  H  F  *  S  W  S  W  G  *  S  Y  C  V  Y  T  K  G  K  N  K  W  L  G  R  T  N  G  *  Y  Q  S  Q  Y  R  Y  R  L  E  W  T  N  Q  G  H  F  H  L  K  Q  S  Q  A  I  H  G  L  L  T  *  K  N  Q  V  Q  Q  V  *  L  C  L  R  S  H  *  *  T  *  H  S  K  T  *  *  Q  P  H  L  T  S  E  K  S  H  C  *  L  K  E  G  V  G  P  F  T  E  P  Y  F  Q  A  T  S  T  W  Q  S  R  S  W  N  M  L  G  N  *  A  M  M  M  L  L  P  C  L  N  N  S  P  G  L  S  I  L  I  C  C  L  F  L  V  T  A  L  Q  :  G  K  R  S  *  S  Y  T  N  S  C  P  M  V  T  S  T  D  G  Y  T  S  F  Q  L  L  P  P  T  W  K  T  G  Q  P  T  R  G  S  Y  K  T  G  P  K  L  H  H  P  G  K  W  N  G  T  R  A  T  V  L  R  </first_frame>
            <second_frame>  T  V  T  H  *  K  S  *  L  Y  N  P  N  T  Q  E  N  V  A  F  E  T  Q  T  C  Q  T  K  H  T  Q  E  R  A  Q  I  K  K  E  S  F  N  R  S  S  F  L  C  F  S  I  S  N  L  G  H  G  V  S  H  I  V  S  I  Q  K  E  K  T  N  G  *  E  E  Q  M  A  N  I  K  A  N  T  D  T  V  *  N  G  Q  I  R  A  I  F  I  *  N  R  V  R  Q  F  M  G  C  *  H  K  R  T  K  F  S  R  C  S  Y  V  *  E  A  I  D  E  P  N  I  Q  R  P  D  S  S  H  I  S  L  R  K  R  V  I  V  S  *  R  K  V  W  A  R  L  Q  S  R  T  S  R  R  P  P  R  G  N  Q  G  L  G  T  C  *  G  T  K  P  *  *  C  Y  C  L  V  *  T  T  L  Q  D  *  A  S  *  S  V  A  Y  F  W  L  L  H  C  R :   E  R  E  A  S  L  I  R  I  H  V  Q  W  *  P  P  P  M  A  T  R  A  S  N  C  Y  H  Q  R  G  R  L  D  N  R  H  V  G  V  T  K  R  V  P  N  Y  I  T  R  E  N  G  M  A  H  A  P  P  Y  C  G </second_frame>
            <third_frame>   Q  L  R  I  K  N  H  N  F  T  T  P  T  H  K  K  M  L  P  L  R  H  K  P  V  K  P  N  T  H  K  K  E  P  K  S  R  K  K  V  L  T  V  A  L  S  S  A  S  A  F  L  I  L  V  M  G  L  V  I  L  C  L  Y  K  R  K  K  Q  M  A  R  K  N  K  W  L  I  S  K  P  I  Q  I  P  F  R  M  D  K  S  G  P  F  S  F  E  T  E  S  G  N  S  W  V  A  D  I  K  E  P  S  S  A  G  V  V  M  F  E  K  P  L  M  N  L  T  F  K  D  L  I  A  A  T  S  H  F  G  K  E  S  L  L  A  E  G  R  C  G  P  V  Y  R  A  V  L  P  G  D  L  H  V  A  I  K  V  L  E  H  A  R  E  L  S  H  D  D  A  I  A  L  F  E  Q  L  S  R  I  K  H  P  N  L  L  P  I  S  G  Y  C  I  A   : G  K  E  K  L  V  L  Y  E  F  M  S  N  G  D  L  H  R  W  L  H  E  L  P  T  A  T  T  N  V  E  D  W  T  T  D  T  W  E  L  Q  N  G  S  Q  I  T  S  P  G  K  M  E  W  H  T  R  H  R  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29760" stop="30369"/>
                    <exon start="31072" stop="31253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLRIKNHNFTTPTHKKMLPLRHKPVKPNTHKKEPKSRKKVLTVALSSASAFLILVMGLVILCLYKRKKQMARKNKWLISKPIQIPFRMDKSGPFSFETESGNSWVADIKEPSSAGVVMFEKPLMNLTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPGDLHVAIKVLEHARELSHDDAIALFEQLSRIKHPNLLPISGYCIAGKEKLVLYEFMSNGDLHRWLHELPTATTNVEDWTTDTWELQNGSQITSPGKMEWHTRHRIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31511" PGL_stop="32235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31511" e_stop="32235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="31511" e_stop="32235" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31511" stop="32235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31512" stop="31984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31639" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356104" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAATGGAGCCGACGCGCTCGACTCGAGACTAAAACTCGGCGGTGACTCAGTGAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGAATGCAACAAGTTTTGGGTTTGCTAAAAGACATACAGCCGCACTACCAACTCGGAAAAACGCAAAATTTATGATCTTCAGGTAAACCACTCTCACTCCCAGCGCGTGATTCACACGACGAGGAAGATTGATTGGCAGCATTGCATTATTGTACTCCCATGTGTTTGATTTGACCATTGAAAAGTCAAAAGTACAATGCATCTATTCCACATCATCAATGGCATTCAGTCACGTGCAGGTCACGTGATGAAGTGTAGTGAGAGGAACATGTTTTGCTTGTTTGTCTCTTTTTTACTCTCTCTTTCTTTTTCTTTTCTTTTTTCGTAATTTGTATAGTATTTAATTAGAAAAAGAAAATTGAACAAAAATCATGGGTAAATCTTTTTTTATATATAATCTTTTATTTATTTATTTAGATTTTAGGGAGTGTAATTTGAAGTGGAGCAGAGAAGGCAGAGAATCCCACTAATTGCTTGTCTCTACTAAGGGACATTAGAATCATTCAACTCCTTTAGTTTTCTTTTCTTTTACCTTCTTTATTTTTTTCTCTTTAATTTAAACTTTTATTGTTTGTTTGTTCTTTTTCTTTTCTATTTATTGCTT</gDNA_template>
            <first_frame> W  K  W  S  R  R  A  R  L  E  T  K  T  R  R  *  L  S  E  *  D  G  G  V  P  P  S  W  V  L  V  Y  G  G  G  P  K  *  T  A  *  N  A  T  S  F  G  F  A  K  R  H  T  A  A  L  P  T  R  K  N  A  K  F  M  I  F  R  *  T  T  L  T  P  S  A  *  F  T  R  R  G  R  L  I  G  S  I  A  L  L  Y  S  H  V  F  D  L  T  I  E  K  S  K  V  Q  C  I  Y  S  T  S  S  M  A  F  S  H  V  Q  V  T  *  *  S  V  V  R  G  T  C  F  A  C  L  S  L  F  Y  S  L  F  L  F  L  F  F  F  R  N  L  Y  S  I  *  L  E  K  E  N  *  T  K  I  M  G  K  S  F  F  I  Y  N  L  L  F  I  Y  L  D  F  R  E  C  N  L  K  W  S  R  E  G  R  E  S  H  *  L  L  V  S  T  K  G  H  *  N  H  S  T  P  L  V  F  F  S  F  T  F  F  I  F  F  S  L  I  *  T  F  I  V  C  L  F  F  F  F  S  I  Y  C   </first_frame>
            <second_frame>  G  N  G  A  D  A  L  D  S  R  L  K  L  G  G  D  S  V  S  E  M  V  E  C  L  R  V  G  Y  L  C  T  A  E  A  P  N  K  R  P  R  M  Q  Q  V  L  G  L  L  K  D  I  Q  P  H  Y  Q  L  G  K  T  Q  N  L  *  S  S  G  K  P  L  S  L  P  A  R  D  S  H  D  E  E  D  *  L  A  A  L  H  Y  C  T  P  M  C  L  I  *  P  L  K  S  Q  K  Y  N  A  S  I  P  H  H  Q  W  H  S  V  T  C  R  S  R  D  E  V  *  *  E  E  H  V  L  L  V  C  L  F  F  T  L  S  F  F  F  F  S  F  F  V  I  C  I  V  F  N  *  K  K  K  I  E  Q  K  S  W  V  N  L  F  L  Y  I  I  F  Y  L  F  I  *  I  L  G  S  V  I  *  S  G  A  E  K  A  E  N  P  T  N  C  L  S  L  L  R  D  I  R  I  I  Q  L  L  *  F  S  F  L  L  P  S  L  F  F  S  L  *  F  K  L  L  L  F  V  C  S  F  S  F  L  F  I  A  </second_frame>
            <third_frame>   E  M  E  P  T  R  S  T  R  D  *  N  S  A  V  T  Q  *  V  R  W  W  S  A  S  E  L  G  T  C  V  R  R  R  P  Q  I  N  G  L  E  C  N  K  F  W  V  C  *  K  T  Y  S  R  T  T  N  S  E  K  R  K  I  Y  D  L  Q  V  N  H  S  H  S  Q  R  V  I  H  T  T  R  K  I  D  W  Q  H  C  I  I  V  L  P  C  V  *  F  D  H  *  K  V  K  S  T  M  H  L  F  H  I  I  N  G  I  Q  S  R  A  G  H  V  M  K  C  S  E  R  N  M  F  C  L  F  V  S  F  L  L  S  L  S  F  S  F  L  F  S  *  F  V  *  Y  L  I  R  K  R  K  L  N  K  N  H  G  *  I  F  F  Y  I  *  S  F  I  Y  L  F  R  F  *  G  V  *  F  E  V  E  Q  R  R  Q  R  I  P  L  I  A  C  L  Y  *  G  T  L  E  S  F  N  S  F  S  F  L  F  F  Y  L  L  Y  F  F  L  F  N  L  N  F  Y  C  L  F  V  L  F  L  F  Y  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31512" stop="31706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNGADALDSRLKLGGDSVSEMVECLRVGYLCTAEAPNKRPRMQQVLGLLKDIQPHYQLGKTQNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36796" PGL_stop="44458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36796" e_stop="37381"/>
            <exon e_start="37594" e_stop="37654"/>
            <exon e_start="39753" e_stop="39991"/>
            <exon e_start="40711" e_stop="40915"/>
            <exon e_start="41336" e_stop="41467"/>
            <exon e_start="41553" e_stop="41644"/>
            <exon e_start="41735" e_stop="41829"/>
            <exon e_start="44036" e_stop="44458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="0.984"/>
          <exon-intron don_prob="0.810" acc_prob="0.998" e_score="0.960"/>
          <exon-intron don_prob="0.982" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36796" e_stop="37381" e_length="586"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="37594" e_stop="37654" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="39753" e_stop="39991" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.810" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39992" i_stop="40710" i_length="719"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40711" e_stop="40915" e_length="205"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40916" i_stop="41335" i_length="420"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41336" e_stop="41467" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41468" i_stop="41552" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41553" e_stop="41644" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41645" i_stop="41734" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41735" e_stop="41829" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="41830" i_stop="44035" i_length="2206"/>
          </intron>
          <exon e_serial="8" e_score="0.946">
            <gDNA_exon_boundary e_start="44036" e_stop="44458" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36796" stop="37381"/>
              <exon start="37594" stop="37654"/>
              <exon start="39753" stop="39871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36797" stop="37316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36797" stop="37315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36982" stop="37381"/>
              <exon start="37594" stop="37654"/>
              <exon start="39753" stop="39951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36988" stop="37381"/>
              <exon start="37594" stop="37654"/>
              <exon start="39753" stop="39898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39891" stop="39991"/>
              <exon start="40711" stop="40915"/>
              <exon start="41336" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41349" stop="41467"/>
              <exon start="41553" stop="41644"/>
              <exon start="41735" stop="41829"/>
              <exon start="44036" stop="44458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG : GAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTG : TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAGGTTAGAACACCTAGTGCTCAAACCCCTCCTCAGTCAGCTGAGCCAACTGAACAATTGGATGATACTATGGACTTTGCTGTTAATGAAGGACATGGAGTTGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAA : GAGAAGATCATGAAATTCCTTGCTCTGAAGAAGACTACTGGCAGAAGCTTTAATGCAGAAGTACGCAACAGAAAGGAGTATCGGAATCCAGACTTCTTGCTGCATTCAGTGACTTATCAAGATATTGACCAGATAGGATCTTGCTTCAGCAAAGACGTATTCGATCCGCATGGATATGACAAAAGCGACTTCTATGATGAAATAG : AGGCTGACTCAAAGCGTGAAATGGAGAGAAGGGAGCAAGAACGGAGGAGGAGTCCAAAAGTTGACTTCATATCGGGAGGAACACAGCCTGCACCGATGGTTCCTACACCAAAAATCAATCTGTCGATTCCAG : GGATGGCTCCTGTTGCTGCTGGTGCATTACCGCCCACTGTAGATGTTGTAACTCGGGATGGTAGACAGAACAAAAAGTCGAAATGGGACAAG : GTGGATGGTGATCGGAGAGACCCTGTTTCTGCTGTTGGTGCACATGCAGCACTTCTATCAGCTGCTAATGCTGGTGCTGGTTACACTGCATTTGC : GCAACAAAGACGTCGGGAGGCAGAAGAGAAGCGACCTAGTGACAAGAAGTTGGATAGAAGATCTTGAAAATCTAATTAGACATGCGACTCCTGAAAGCTATTGACCCTTTCCAACACATCCAGTCATGCACAAGTGTTGGCACAAAGAAAGCAGTTAGAGCAACGGGTGCCTCATTTAGAAAGACAAATTACTGTCAACTCTGAATATTCCCATATACTGTATATACCCAGTTTTTGTTTAGTAGTGAAGTCGATTACAGGTTTTAAAGTTAAAGGAGTGTAGAGTTTTCAATATAAAGCTGGGGAGAAAAAAAATGTACAAGTCTTCTTTTGGCCATGTGCGCCATAGATTGCAAATTATTAAGTTGTACTCTTTGACTAGAGTCCTAAAAGAGCTGAAATTTTTTTAATGTACTTTGAAAA</gDNA_template>
            <first_frame> R  T  L  S  Q  P  N  Y  P  N  S  S  R  R  N  P  *  I  S  N  F  F  N  Y  R  N  P  *  Y  F  K  T  S  K  S  Q  F  R  R  L  K  T  *  L  N  R  N  G  I  A  E  E  G  I  G  G  N  R  S  T  V  Y  L  W  R  R  R  R  *  R  H  G  R  S  *  R  R  T  K  G  R  R  C  T  R  T  Q  T  *  I  T  *  L  R  L  Y  N  G  H  R  V  P  R  *  *  Q  K  S  F  R  V  *  F  R  S  E  F  D  S  F  T  S  N  S  T  T  S  A  T  T  V  C  *  K  F  H  T  *  Q  G  F  E  F  W  C  W  F  Y  H  Y  D  A  I  S  V  R  F  F  P  K  S  S  A  N  G  D  E  F  E  C  E  C  E  *  T  S  K  A  N  Y  C  *  L  C  S  *  *  S  Y  H  V  T  G  A  *   : G  R  R  S  N  G  *  W  K  S  H  V  W  S  G  T  S  N  C  *  C :   *  I  Y  G  K  G  F  T  S  S  S  G  *  N  T  *  C  S  N  P  S  S  V  S  *  A  N  *  T  I  G  *  Y  Y  G  L  C  C  *  *  R  T  W  S  C  *  R  I  C  Y  G  S  C  R  R  T  K  R  V  R  S  V  G  E  I  S  S  S  S  T  K  G  E  V  L  R  *  I  A   : R  E  D  H  E  I  P  C  S  E  E  D  Y  W  Q  K  L  *  C  R  S  T  Q  Q  K  G  V  S  E  S  R  L  L  A  A  F  S  D  L  S  R  Y  *  P  D  R  I  L  L  Q  Q  R  R  I  R  S  A  W  I  *  Q  K  R  L  L  *  *  N  R :   G  *  L  K  A  *  N  G  E  K  G  A  R  T  E  E  E  S  K  S  *  L  H  I  G  R  N  T  A  C  T  D  G  S  Y  T  K  N  Q  S  V  D  S  R :   D  G  S  C  C  C  W  C  I  T  A  H  C  R  C  C  N  S  G  W  *  T  E  Q  K  V  E  M  G  Q   : G  G  W  *  S  E  R  P  C  F  C  C  W  C  T  C  S  T  S  I  S  C  *  C  W  C  W  L  H  C  I  C  :  A  T  K  T  S  G  G  R  R  E  A  T  *  *  Q  E  V  G  *  K  I  L  K  I  *  L  D  M  R  L  L  K  A  I  D  P  F  Q  H  I  Q  S  C  T  S  V  G  T  K  K  A  V  R  A  T  G  A  S  F  R  K  T  N  Y  C  Q  L  *  I  F  P  Y  T  V  Y  T  Q  F  L  F  S  S  E  V  D  Y  R  F  *  S  *  R  S  V  E  F  S  I  *  S  W  G  E  K  K  C  T  S  L  L  L  A  M  C  A  I  D  C  K  L  L  S  C  T  L  *  L  E  S  *  K  S  *  N  F  F  N  V  L  *  K </first_frame>
            <second_frame>  G  H  F  L  N  P  I  T  P  T  A  H  D  G  T  L  E  S  P  I  F  S  I  I  E  T  P  N  I  S  K  L  R  N  P  N  F  V  D  *  K  P  N  *  I  V  M  A  S  Q  K  K  E  S  E  G  I  A  L  L  S  I  Y  G  D  D  E  D  E  D  M  E  E  V  E  E  E  Q  R  E  E  D  A  Q  E  H  R  P  E  S  H  N  L  G  F  T  M  G  T  E  F  Q  D  D  S  K  K  V  F  G  S  D  S  G  R  S  S  T  P  S  P  L  I  Q  Q  L  Q  Q  Q  Q  S  V  E  N  F  T  P  S  K  V  S  N  F  G  V  G  S  T  T  T  T  P  L  A  S  V  S  S  P  N  P  Q  P  M  E  M  N  L  N  V  N  V  S  R  R  A  R  L  T  I  V  D  Y  A  H  D  E  V  T  M  S  P  E  P  E  :  E  G  E  V  M  A  S  G  R  V  M  Y  G  A  E  L  Q  T  A  S   : V  E  F  M  E  K  A  S  P  A  L  Q  V  R  T  P  S  A  Q  T  P  P  Q  S  A  E  P  T  E  Q  L  D  D  T  M  D  F  A  V  N  E  G  H  G  V  A  E  E  S  V  M  V  P  A  E  E  Q  K  E  L  D  L  L  E  K  F  L  P  P  P  P  K  E  K  C  S  D  E  L  Q  :  E  K  I  M  K  F  L  A  L  K  K  T  T  G  R  S  F  N  A  E  V  R  N  R  K  E  Y  R  N  P  D  F  L  L  H  S  V  T  Y  Q  D  I  D  Q  I  G  S  C  F  S  K  D  V  F  D  P  H  G  Y  D  K  S  D  F  Y  D  E  I   : E  A  D  S  K  R  E  M  E  R  R  E  Q  E  R  R  R  S  P  K  V  D  F  I  S  G  G  T  Q  P  A  P  M  V  P  T  P  K  I  N  L  S  I  P   : G  M  A  P  V  A  A  G  A  L  P  P  T  V  D  V  V  T  R  D  G  R  Q  N  K  K  S  K  W  D  K  :  V  D  G  D  R  R  D  P  V  S  A  V  G  A  H  A  A  L  L  S  A  A  N  A  G  A  G  Y  T  A  F  A :   Q  Q  R  R  R  E  A  E  E  K  R  P  S  D  K  K  L  D  R  R  S  *  K  S  N  *  T  C  D  S  *  K  L  L  T  L  S  N  T  S  S  H  A  Q  V  L  A  Q  R  K  Q  L  E  Q  R  V  P  H  L  E  R  Q  I  T  V  N  S  E  Y  S  H  I  L  Y  I  P  S  F  C  L  V  V  K  S  I  T  G  F  K  V  K  G  V  *  S  F  Q  Y  K  A  G  E  K  K  N  V  Q  V  F  F  W  P  C  A  P  *  I  A  N  Y  *  V  V  L  F  D  *  S  P  K  R  A  E  I  F  L  M  Y  F  E   </second_frame>
            <third_frame>   D  T  F  S  T  Q  L  P  Q  Q  L  T  T  E  P  L  N  L  Q  F  F  Q  L  S  K  P  L  I  F  Q  N  F  E  I  P  I  S  *  T  E  N  L  I  E  S  *  W  H  R  R  R  R  N  R  R  E  S  L  Y  C  L  S  M  A  T  T  K  M  K  T  W  K  K  L  K  K  N  K  G  K  K  M  H  K  N  T  D  L  N  H  I  T  *  A  L  Q  W  A  Q  S  S  K  M  I  A  K  K  F  S  G  L  I  Q  V  G  V  R  L  L  H  L  *  F  N  N  F  S  N  N  S  L  L  K  I  S  H  L  A  R  F  R  I  L  V  L  V  L  P  L  R  R  H  *  R  P  F  L  P  Q  I  L  S  Q  W  R  *  I  *  M  *  M  *  V  D  E  Q  G  *  L  L  L  I  M  L  M  M  K  L  P  C  H  R  S  L  R :   K  E  K  *  W  L  V  E  E  S  C  M  E  R  N  F  K  L  L  V  :  L  N  L  W  K  R  L  H  Q  L  F  R  L  E  H  L  V  L  K  P  L  L  S  Q  L  S  Q  L  N  N  W  M  I  L  W  T  L  L  L  M  K  D  M  E  L  L  K  N  L  L  W  F  L  Q  K  N  K  K  S  *  I  C  W  R  N  F  F  L  L  H  Q  R  R  S  A  Q  M  N  C  K :   R  R  S  *  N  S  L  L  *  R  R  L  L  A  E  A  L  M  Q  K  Y  A  T  E  R  S  I  G  I  Q  T  S  C  C  I  Q  *  L  I  K  I  L  T  R  *  D  L  A  S  A  K  T  Y  S  I  R  M  D  M  T  K  A  T  S  M  M  K  *  :  R  L  T  Q  S  V  K  W  R  E  G  S  K  N  G  G  G  V  Q  K  L  T  S  Y  R  E  E  H  S  L  H  R  W  F  L  H  Q  K  S  I  C  R  F  Q  :  G  W  L  L  L  L  L  V  H  Y  R  P  L  *  M  L  *  L  G  M  V  D  R  T  K  S  R  N  G  T  R :   W  M  V  I  G  E  T  L  F  L  L  L  V  H  M  Q  H  F  Y  Q  L  L  M  L  V  L  V  T  L  H  L   : R  N  K  D  V  G  R  Q  K  R  S  D  L  V  T  R  S  W  I  E  D  L  E  N  L  I  R  H  A  T  P  E  S  Y  *  P  F  P  T  H  P  V  M  H  K  C  W  H  K  E  S  S  *  S  N  G  C  L  I  *  K  D  K  L  L  S  T  L  N  I  P  I  Y  C  I  Y  P  V  F  V  *  *  *  S  R  L  Q  V  L  K  L  K  E  C  R  V  F  N  I  K  L  G  R  K  K  M  Y  K  S  S  F  G  H  V  R  H  R  L  Q  I  I  K  L  Y  S  L  T  R  V  L  K  E  L  K  F  F  *  C  T  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36929" stop="37381"/>
                    <exon start="37594" stop="37654"/>
                    <exon start="39753" stop="39991"/>
                    <exon start="40711" stop="40915"/>
                    <exon start="41336" stop="41467"/>
                    <exon start="41553" stop="41644"/>
                    <exon start="41735" stop="41829"/>
                    <exon start="44036" stop="44102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVMASQKKESEGIALLSIYGDDEDEDMEEVEEEQREEDAQEHRPESHNLGFTMGTEFQDDSKKVFGSDSGRSSTPSPLIQQLQQQQSVENFTPSKVSNFGVGSTTTTPLASVSSPNPQPMEMNLNVNVSRRARLTIVDYAHDEVTMSPEPEEGEVMASGRVMYGAELQTASVEFMEKASPALQVRTPSAQTPPQSAEPTEQLDDTMDFAVNEGHGVAEESVMVPAEEQKELDLLEKFLPPPPKEKCSDELQEKIMKFLALKKTTGRSFNAEVRNRKEYRNPDFLLHSVTYQDIDQIGSCFSKDVFDPHGYDKSDFYDEIEADSKREMERREQERRRSPKVDFISGGTQPAPMVPTPKINLSIPGMAPVAAGALPPTVDVVTRDGRQNKKSKWDKVDGDRRDPVSAVGAHAALLSAANAGAGYTAFAQQRRREAEEKRPSDKKLDRRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36797" e_stop="37381"/>
            <exon e_start="37594" e_stop="37654"/>
            <exon e_start="39753" e_stop="39787"/>
            <exon e_start="39876" e_stop="39991"/>
            <exon e_start="40224" e_stop="40474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="0.951"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.934" e_score="0.983"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36797" e_stop="37381" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37382" i_stop="37593" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="37594" e_stop="37654" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37655" i_stop="39752" i_length="2098"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39753" e_stop="39787" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39788" i_stop="39875" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="39876" e_stop="39991" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.810" acc_prob="0.934">
            <gDNA_intron_boundary i_start="39992" i_stop="40223" i_length="232"/>
          </intron>
          <exon e_serial="5" e_score="0.908">
            <gDNA_exon_boundary e_start="40224" e_stop="40474" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36797" stop="37316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36797" stop="37315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37048" stop="37381"/>
              <exon start="37594" stop="37654"/>
              <exon start="39753" stop="39787"/>
              <exon start="39876" stop="39991"/>
              <exon start="40224" stop="40474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37048" stop="37381"/>
              <exon start="37594" stop="37654"/>
              <exon start="39753" stop="39787"/>
              <exon start="39876" stop="39991"/>
              <exon start="40224" stop="40370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACACTTTCTCAACCCAATTACCCCAACAGCTCACGACGGAACCCTTGAATCTCCAATTTTTTCAATTATCGAAACCCCTAATATTTCAAAACTTCGAAATCCCAATTTCGTAGACTGAAAACCTAATTGAATCGTAATGGCATCGCAGAAGAAGGAATCGGAGGGAATCGCTCTACTGTCTATCTATGGCGACGACGAAGATGAAGACATGGAAGAAGTTGAAGAAGAACAAAGGGAAGAAGATGCACAAGAACACAGACCTGAATCACATAACTTAGGCTTTACAATGGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCACCTCTAATTCAACAACTTCAGCAACAACAGTCTGTTGAAAATTTCACACCTAGCAAGGTTTCGAATTTTGGTGTTGGTTCTACCACTACGACGCCATTAGCGTCCGTTTCTTCCCCAAATCCTCAGCCAATGGAGATGAATTTGAATGTGAATGTGAGTAGACGAGCAAGGCTAACTATTGTTGATTATGCTCATGATGAAGTTACCATGTCACCGGAGCCTGAG : GAAGGAGAAGTAATGGCTAGTGGAAGAGTCATGTATGGAGCGGAACTTCAAACTGCTAGTG : TTGAATTTATGGAAAAGGCTTCACCAGCTCTTCAG : GACATGGAGTTGCTGAAGAATCTGTTATGGTTCCTGCAGAAGAACAAAAAGAGTTAGATCTGTTGGAGAAATTTCTTCCTCCTCCACCAAAGGAGAAGTGCTCAGATGAATTGCAA : TGCCTTTCTGTAGTAGTTTGTGAAGGAATGTTTACATGTGGACTGGCTGACGTTGAACTCTGTGCTCGCTAAATCTCTCTCTCCTCTCACAGACAGAATGTCTCAGTCTATCTCTCCCTCTCACTCAGACACACACACGCACACACGAAGTTTGCATTTCCTGTAATTTCATCTCTAGATTCTTATCACTTCAGATACTGACAATTGTTTGTAAAAGCTGTCTGTCTTCAGTAACCGTGGCATTGGATGCT</gDNA_template>
            <first_frame> G  H  F  L  N  P  I  T  P  T  A  H  D  G  T  L  E  S  P  I  F  S  I  I  E  T  P  N  I  S  K  L  R  N  P  N  F  V  D  *  K  P  N  *  I  V  M  A  S  Q  K  K  E  S  E  G  I  A  L  L  S  I  Y  G  D  D  E  D  E  D  M  E  E  V  E  E  E  Q  R  E  E  D  A  Q  E  H  R  P  E  S  H  N  L  G  F  T  M  G  T  E  F  Q  D  D  S  K  K  V  F  G  S  D  S  G  R  S  S  T  P  S  P  L  I  Q  Q  L  Q  Q  Q  Q  S  V  E  N  F  T  P  S  K  V  S  N  F  G  V  G  S  T  T  T  T  P  L  A  S  V  S  S  P  N  P  Q  P  M  E  M  N  L  N  V  N  V  S  R  R  A  R  L  T  I  V  D  Y  A  H  D  E  V  T  M  S  P  E  P  E  :  E  G  E  V  M  A  S  G  R  V  M  Y  G  A  E  L  Q  T  A  S   : V  E  F  M  E  K  A  S  P  A  L  Q  :  D  M  E  L  L  K  N  L  L  W  F  L  Q  K  N  K  K  S  *  I  C  W  R  N  F  F  L  L  H  Q  R  R  S  A  Q  M  N  C  N :   A  F  L  *  *  F  V  K  E  C  L  H  V  D  W  L  T  L  N  S  V  L  A  K  S  L  S  P  L  T  D  R  M  S  Q  S  I  S  P  S  H  S  D  T  H  T  H  T  R  S  L  H  F  L  *  F  H  L  *  I  L  I  T  S  D  T  D  N  C  L  *  K  L  S  V  F  S  N  R  G  I  G  C  </first_frame>
            <second_frame>  D  T  F  S  T  Q  L  P  Q  Q  L  T  T  E  P  L  N  L  Q  F  F  Q  L  S  K  P  L  I  F  Q  N  F  E  I  P  I  S  *  T  E  N  L  I  E  S  *  W  H  R  R  R  R  N  R  R  E  S  L  Y  C  L  S  M  A  T  T  K  M  K  T  W  K  K  L  K  K  N  K  G  K  K  M  H  K  N  T  D  L  N  H  I  T  *  A  L  Q  W  A  Q  S  S  K  M  I  A  K  K  F  S  G  L  I  Q  V  G  V  R  L  L  H  L  *  F  N  N  F  S  N  N  S  L  L  K  I  S  H  L  A  R  F  R  I  L  V  L  V  L  P  L  R  R  H  *  R  P  F  L  P  Q  I  L  S  Q  W  R  *  I  *  M  *  M  *  V  D  E  Q  G  *  L  L  L  I  M  L  M  M  K  L  P  C  H  R  S  L  R :   K  E  K  *  W  L  V  E  E  S  C  M  E  R  N  F  K  L  L  V  :  L  N  L  W  K  R  L  H  Q  L  F  R :   T  W  S  C  *  R  I  C  Y  G  S  C  R  R  T  K  R  V  R  S  V  G  E  I  S  S  S  S  T  K  G  E  V  L  R  *  I  A   : M  P  F  C  S  S  L  *  R  N  V  Y  M  W  T  G  *  R  *  T  L  C  S  L  N  L  S  L  L  S  Q  T  E  C  L  S  L  S  L  P  L  T  Q  T  H  T  R  T  H  E  V  C  I  S  C  N  F  I  S  R  F  L  S  L  Q  I  L  T  I  V  C  K  S  C  L  S  S  V  T  V  A  L  D  A </second_frame>
            <third_frame>   T  L  S  Q  P  N  Y  P  N  S  S  R  R  N  P  *  I  S  N  F  F  N  Y  R  N  P  *  Y  F  K  T  S  K  S  Q  F  R  R  L  K  T  *  L  N  R  N  G  I  A  E  E  G  I  G  G  N  R  S  T  V  Y  L  W  R  R  R  R  *  R  H  G  R  S  *  R  R  T  K  G  R  R  C  T  R  T  Q  T  *  I  T  *  L  R  L  Y  N  G  H  R  V  P  R  *  *  Q  K  S  F  R  V  *  F  R  S  E  F  D  S  F  T  S  N  S  T  T  S  A  T  T  V  C  *  K  F  H  T  *  Q  G  F  E  F  W  C  W  F  Y  H  Y  D  A  I  S  V  R  F  F  P  K  S  S  A  N  G  D  E  F  E  C  E  C  E  *  T  S  K  A  N  Y  C  *  L  C  S  *  *  S  Y  H  V  T  G  A  *   : G  R  R  S  N  G  *  W  K  S  H  V  W  S  G  T  S  N  C  *  C :   *  I  Y  G  K  G  F  T  S  S  S   : G  H  G  V  A  E  E  S  V  M  V  P  A  E  E  Q  K  E  L  D  L  L  E  K  F  L  P  P  P  P  K  E  K  C  S  D  E  L  Q  :  C  L  S  V  V  V  C  E  G  M  F  T  C  G  L  A  D  V  E  L  C  A  R  *  I  S  L  S  S  H  R  Q  N  V  S  V  Y  L  S  L  S  L  R  H  T  H  A  H  T  K  F  A  F  P  V  I  S  S  L  D  S  Y  H  F  R  Y  *  Q  L  F  V  K  A  V  C  L  Q  *  P  W  H  W  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36929" stop="37381"/>
                    <exon start="37594" stop="37654"/>
                    <exon start="39753" stop="39787"/>
                    <exon start="39876" stop="39932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVMASQKKESEGIALLSIYGDDEDEDMEEVEEEQREEDAQEHRPESHNLGFTMGTEFQDDSKKVFGSDSGRSSTPSPLIQQLQQQQSVENFTPSKVSNFGVGSTTTTPLASVSSPNPQPMEMNLNVNVSRRARLTIVDYAHDEVTMSPEPEEGEVMASGRVMYGAELQTASVEFMEKASPALQDMELLKNLLWFLQKNKKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40280" stop="40474"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLCSLNLSLLSQTECLSLSLPLTQTHTRTHEVCISCNFISRFLSLQILTIVCKSCLSSVTVALDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="51370" PGL_stop="51961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51370" e_stop="51961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="51370" e_stop="51961" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51370" stop="51961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTTGGTTTTTGATGACGGAAGAGCCTCATATTTGCATGAAATCTATGGAGATCTACAGACTGATGTTGGAACTACTTTGTATTTTTTTTTGCAGGGTATTGGTATCCTGTTTAGTGGACTTTTTGGGACTGCTACTGGGTGTACAGTTTCTATGTTAGTAGCTCAAGTCCTATGTTACTTGTATGCAATGTGATTTATCTATCGGTTTAACATATCTTTTGTGGTTGACAGTGAGAATGTGGGACTTCTTGGAAGCACTCGTGTGGGTAGCCGCAGAGTTATCCAAATTTCTGCTGGCTTTATGATCTTCTTCTCTATTTTAGGTTGGTCATCTTCTGTGGACTCAACCAAACCTCTGAGAATTTTTCAGCTAGTGTGAACTTGGTTCCTCATAATCCATTTTTTCCCCCGACATTTGTAGGCAAATTTGGAGCATTATTTGCATCAATTCCTTTCCCAATATTCGCTGCTGTATATTGTGTCTTGTTCGGTCTTGTCGGTGAGCATCCTTAGCAACTCCACTCCTCACAACATCTTTCTGGAGATCTCTTTATCAATTTCCCCATCTGACAAACATTTCTTTTATTTC</gDNA_template>
            <first_frame> D  V  G  F  *  *  R  K  S  L  I  F  A  *  N  L  W  R  S  T  D  *  C  W  N  Y  F  V  F  F  F  A  G  Y  W  Y  P  V  *  W  T  F  W  D  C  Y  W  V  Y  S  F  Y  V  S  S  S  S  P  M  L  L  V  C  N  V  I  Y  L  S  V  *  H  I  F  C  G  *  Q  *  E  C  G  T  S  W  K  H  S  C  G  *  P  Q  S  Y  P  N  F  C  W  L  Y  D  L  L  L  Y  F  R  L  V  I  F  C  G  L  N  Q  T  S  E  N  F  S  A  S  V  N  L  V  P  H  N  P  F  F  P  P  T  F  V  G  K  F  G  A  L  F  A  S  I  P  F  P  I  F  A  A  V  Y  C  V  L  F  G  L  V  G  E  H  P  *  Q  L  H  S  S  Q  H  L  S  G  D  L  F  I  N  F  P  I  *  Q  T  F  L  L  F  </first_frame>
            <second_frame>  M  L  V  F  D  D  G  R  A  S  Y  L  H  E  I  Y  G  D  L  Q  T  D  V  G  T  T  L  Y  F  F  L  Q  G  I  G  I  L  F  S  G  L  F  G  T  A  T  G  C  T  V  S  M  L  V  A  Q  V  L  C  Y  L  Y  A  M  *  F  I  Y  R  F  N  I  S  F  V  V  D  S  E  N  V  G  L  L  G  S  T  R  V  G  S  R  R  V  I  Q  I  S  A  G  F  M  I  F  F  S  I  L  G  W  S  S  S  V  D  S  T  K  P  L  R  I  F  Q  L  V  *  T  W  F  L  I  I  H  F  F  P  R  H  L  *  A  N  L  E  H  Y  L  H  Q  F  L  S  Q  Y  S  L  L  Y  I  V  S  C  S  V  L  S  V  S  I  L  S  N  S  T  P  H  N  I  F  L  E  I  S  L  S  I  S  P  S  D  K  H  F  F  Y  F </second_frame>
            <third_frame>   C  W  F  L  M  T  E  E  P  H  I  C  M  K  S  M  E  I  Y  R  L  M  L  E  L  L  C  I  F  F  C  R  V  L  V  S  C  L  V  D  F  L  G  L  L  L  G  V  Q  F  L  C  *  *  L  K  S  Y  V  T  C  M  Q  C  D  L  S  I  G  L  T  Y  L  L  W  L  T  V  R  M  W  D  F  L  E  A  L  V  W  V  A  A  E  L  S  K  F  L  L  A  L  *  S  S  S  L  F  *  V  G  H  L  L  W  T  Q  P  N  L  *  E  F  F  S  *  C  E  L  G  S  S  *  S  I  F  S  P  D  I  C  R  Q  I  W  S  I  I  C  I  N  S  F  P  N  I  R  C  C  I  L  C  L  V  R  S  C  R  *  A  S  L  A  T  P  L  L  T  T  S  F  W  R  S  L  Y  Q  F  P  H  L  T  N  I  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51643" stop="51885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQSYPNFCWLYDLLLYFRLVIFCGLNQTSENFSASVNLVPHNPFFPPTFVGKFGALFASIPFPIFAAVYCVLFGLVGEHP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51371" stop="51565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLVFDDGRASYLHEIYGDLQTDVGTTLYFFLQGIGILFSGLFGTATGCTVSMLVAQVLCYLYAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="52772" PGL_stop="52123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52772" e_stop="52123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="52772" e_stop="52123" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52772" stop="52129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52642" stop="52123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGGTGAATAAAAAAGCACATTACTCATAGCAATTCCTTCTTACTTTTTCTGTTATCGCGAAAATTAGGAAGGAATAAGGTAACAGAGGAGCAGAGTAAGGAATAAGAAAATCTTCTCATTATGCCAAAATAGGCCTTGACATTTTTGACTACAAATAAATGAAAAAATAATATTCATGTCAACTGATGTCTACTTCCTAGGAATTTCATCACAACTGCCTACATAGAGTTTGTTCTTTGATTCAAATATATCATAAGGGATCAACCCTGAGATCAAACTCTTCTCAAATTTCACTTTCACATCCTTCCTCTTCTGGTCCAGATATATCGCAAACATGATCATGAAGGAGGAAAGAAGCGGTTGAGATTGAAAGGGAGGGTGTAAAACTCTTCATTTCTACTATCACCCTTAAATGTCCTGAACTTCACCCACCATGGCATTCCCCTATCTTTGGCACTGTCCTTGTAGTCCAGTGTGTTGTCGAGAAACACAGCAACCATCATAGCCACAGTTGGGGAAGACGAAAAGATGGTGTTGAGAAAATCATTGAACTGCATATTTCCAAAACAGAACCAGATCAGTTACTAATGACTCCATATAAAATTTGAAGTTCGGAAACTTAATCATAATATATTTGACTCACCCA</gDNA_template>
            <first_frame> F  L  V  N  K  K  A  H  Y  S  *  Q  F  L  L  T  F  S  V  I  A  K  I  R  K  E  *  G  N  R  G  A  E  *  G  I  R  K  S  S  H  Y  A  K  I  G  L  D  I  F  D  Y  K  *  M  K  K  *  Y  S  C  Q  L  M  S  T  S  *  E  F  H  H  N  C  L  H  R  V  C  S  L  I  Q  I  Y  H  K  G  S  T  L  R  S  N  S  S  Q  I  S  L  S  H  P  S  S  S  G  P  D  I  S  Q  T  *  S  *  R  R  K  E  A  V  E  I  E  R  E  G  V  K  L  F  I  S  T  I  T  L  K  C  P  E  L  H  P  P  W  H  S  P  I  F  G  T  V  L  V  V  Q  C  V  V  E  K  H  S  N  H  H  S  H  S  W  G  R  R  K  D  G  V  E  K  I  I  E  L  H  I  S  K  T  E  P  D  Q  L  L  M  T  P  Y  K  I  *  S  S  E  T  *  S  *  Y  I  *  L  T   </first_frame>
            <second_frame>  F  W  *  I  K  K  H  I  T  H  S  N  S  F  L  L  F  L  L  S  R  K  L  G  R  N  K  V  T  E  E  Q  S  K  E  *  E  N  L  L  I  M  P  K  *  A  L  T  F  L  T  T  N  K  *  K  N  N  I  H  V  N  *  C  L  L  P  R  N  F  I  T  T  A  Y  I  E  F  V  L  *  F  K  Y  I  I  R  D  Q  P  *  D  Q  T  L  L  K  F  H  F  H  I  L  P  L  L  V  Q  I  Y  R  K  H  D  H  E  G  G  K  K  R  L  R  L  K  G  R  V  *  N  S  S  F  L  L  S  P  L  N  V  L  N  F  T  H  H  G  I  P  L  S  L  A  L  S  L  *  S  S  V  L  S  R  N  T  A  T  I  I  A  T  V  G  E  D  E  K  M  V  L  R  K  S  L  N  C  I  F  P  K  Q  N  Q  I  S  Y  *  *  L  H  I  K  F  E  V  R  K  L  N  H  N  I  F  D  S  P  </second_frame>
            <third_frame>   F  G  E  *  K  S  T  L  L  I  A  I  P  S  Y  F  F  C  Y  R  E  N  *  E  G  I  R  *  Q  R  S  R  V  R  N  K  K  I  F  S  L  C  Q  N  R  P  *  H  F  *  L  Q  I  N  E  K  I  I  F  M  S  T  D  V  Y  F  L  G  I  S  S  Q  L  P  T  *  S  L  F  F  D  S  N  I  S  *  G  I  N  P  E  I  K  L  F  S  N  F  T  F  T  S  F  L  F  W  S  R  Y  I  A  N  M  I  M  K  E  E  R  S  G  *  D  *  K  G  G  C  K  T  L  H  F  Y  Y  H  P  *  M  S  *  T  S  P  T  M  A  F  P  Y  L  W  H  C  P  C  S  P  V  C  C  R  E  T  Q  Q  P  S  *  P  Q  L  G  K  T  K  R  W  C  *  E  N  H  *  T  A  Y  F  Q  N  R  T  R  S  V  T  N  D  S  I  *  N  L  K  F  G  N  L  I  I  I  Y  L  T  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52424" stop="52161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKEAVEIEREGVKLFISTITLKCPELHPPWHSPIFGTVLVVQCVVEKHSNHHSHSWGRRKDGVEKIIELHISKTEPDQLLMTPYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="52263" PGL_stop="52674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52263" e_stop="52674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52263" e_stop="52674" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52263" stop="52674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52263" stop="52618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTATGATGGTTGCTGTGTTTCTCGACAACACACTGGACTACAAGGACAGTGCCAAAGATAGGGGAATGCCATGGTGGGTGAAGTTCAGGACATTTAAGGGTGATAGTAGAAATGAAGAGTTTTACACCCTCCCTTTCAATCTCAACCGCTTCTTTCCTCCTTCATGATCATGTTTGCGATATATCTGGACCAGAAGAGGAAGGATGTGAAAGTGAAATTTGAGAAGAGTTTGATCTCAGGGTTGATCCCTTATGATATATTTGAATCAAAGAACAAACTCTATGTAGGCAGTTGTGATGAAATTCCTAGGAAGTAGACATCAGTTGACATGAATATTATTTTTTCATTTATTTGTAGTCAAAAATGTCAAGGCCTATTTTGGCATAATGAGAAGATTTTCTTATTCCTTAC</gDNA_template>
            <first_frame> A  M  M  V  A  V  F  L  D  N  T  L  D  Y  K  D  S  A  K  D  R  G  M  P  W  W  V  K  F  R  T  F  K  G  D  S  R  N  E  E  F  Y  T  L  P  F  N  L  N  R  F  F  P  P  S  *  S  C  L  R  Y  I  W  T  R  R  G  R  M  *  K  *  N  L  R  R  V  *  S  Q  G  *  S  L  M  I  Y  L  N  Q  R  T  N  S  M  *  A  V  V  M  K  F  L  G  S  R  H  Q  L  T  *  I  L  F  F  H  L  F  V  V  K  N  V  K  A  Y  F  G  I  M  R  R  F  S  Y  S  L  </first_frame>
            <second_frame>  L  *  W  L  L  C  F  S  T  T  H  W  T  T  R  T  V  P  K  I  G  E  C  H  G  G  *  S  S  G  H  L  R  V  I  V  E  M  K  S  F  T  P  S  L  S  I  S  T  A  S  F  L  L  H  D  H  V  C  D  I  S  G  P  E  E  E  G  C  E  S  E  I  *  E  E  F  D  L  R  V  D  P  L  *  Y  I  *  I  K  E  Q  T  L  C  R  Q  L  *  *  N  S  *  E  V  D  I  S  *  H  E  Y  Y  F  F  I  Y  L  *  S  K  M  S  R  P  I  L  A  *  *  E  D  F  L  I  P  Y </second_frame>
            <third_frame>   Y  D  G  C  C  V  S  R  Q  H  T  G  L  Q  G  Q  C  Q  R  *  G  N  A  M  V  G  E  V  Q  D  I  *  G  *  *  *  K  *  R  V  L  H  P  P  F  Q  S  Q  P  L  L  S  S  F  M  I  M  F  A  I  Y  L  D  Q  K  R  K  D  V  K  V  K  F  E  K  S  L  I  S  G  L  I  P  Y  D  I  F  E  S  K  N  K  L  Y  V  G  S  C  D  E  I  P  R  K  *  T  S  V  D  M  N  I  I  F  S  F  I  C  S  Q  K  C  Q  G  L  F  W  H  N  E  K  I  F  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52379" stop="52579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLHPPFQSQPLLSSFMIMFAIYLDQKRKDVKVKFEKSLISGLIPYDIFESKNKLYVGSCDEIPRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="58830" PGL_stop="58023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58830" e_stop="58023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="58830" e_stop="58023" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58830" stop="58023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58828" stop="58025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="59489" PGL_stop="58841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59489" e_stop="58841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="59489" e_stop="58841" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59489" stop="58841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59488" stop="59104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59488" stop="58841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="66628" PGL_stop="65890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66628" e_stop="65890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66628" e_stop="65890" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66628" stop="65890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66628" stop="66064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66627" stop="66080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299902" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAGCCATGTTATGTTTGTCCAAAAGGGTGACTCTGGTTTTCAAAATGGTATTTTAAATTTAGTAGTAATTAACAATCAGTATTGACTTTCATTGGTCTGATTCTATACTTCTTTTCTATTTTTATATGTTGAGGAATTTTCATGGAAAATACTAATGAATTCAACTCTAACATCATCATTGTTTGTCCCTTTCCACCATTTCTCTTGATTGACCCTAAAGATAACAATTGCTTGAATTTTTAATTCAATTGTATTTTTTAAAATCATTTTATGTGTAATGTGGTTTATACCTTAGTGTTTACTGGAACAAACATACTGTATTCTAACATGTACACAACCATGATGAGAAAAATCAATTTCCTTTTCCCTCTCTTAGTTTCAATATGGCATCATTTGCTGATATTATCAGCCACTGCAGAAGTCAATCTCAAAACTGATGAAGCTTCTCTACTTGCTTTGAAATCCTATGTTACTTCCGATACTTACAATATCTTGTCAAGCAACTGGACCTCAACTACTTCTGTTTGCAATTGGATTGGAGTCACCTGCGGCTCTCGCCATCAAAGAGTTATAACCTTGGATATTTCTGATATGGGATTAGTAGGCACCATCCCTCCTCACTTGGGAAATCTGTCCTTTTTGGTTTCTCTCGATATCAGTAGCAACAGCTTCCAAGGAATTTTGCCACGAGAGTTGGCTAATTTGCATAGATTGGAGTTTATAAATGTCACTTCTA</gDNA_template>
            <first_frame> E  K  P  C  Y  V  C  P  K  G  *  L  W  F  S  K  W  Y  F  K  F  S  S  N  *  Q  S  V  L  T  F  I  G  L  I  L  Y  F  F  S  I  F  I  C  *  G  I  F  M  E  N  T  N  E  F  N  S  N  I  I  I  V  C  P  F  P  P  F  L  L  I  D  P  K  D  N  N  C  L  N  F  *  F  N  C  I  F  *  N  H  F  M  C  N  V  V  Y  T  L  V  F  T  G  T  N  I  L  Y  S  N  M  Y  T  T  M  M  R  K  I  N  F  L  F  P  L  L  V  S  I  W  H  H  L  L  I  L  S  A  T  A  E  V  N  L  K  T  D  E  A  S  L  L  A  L  K  S  Y  V  T  S  D  T  Y  N  I  L  S  S  N  W  T  S  T  T  S  V  C  N  W  I  G  V  T  C  G  S  R  H  Q  R  V  I  T  L  D  I  S  D  M  G  L  V  G  T  I  P  P  H  L  G  N  L  S  F  L  V  S  L  D  I  S  S  N  S  F  Q  G  I  L  P  R  E  L  A  N  L  H  R  L  E  F  I  N  V  T  S  </first_frame>
            <second_frame>  K  S  H  V  M  F  V  Q  K  G  D  S  G  F  Q  N  G  I  L  N  L  V  V  I  N  N  Q  Y  *  L  S  L  V  *  F  Y  T  S  F  L  F  L  Y  V  E  E  F  S  W  K  I  L  M  N  S  T  L  T  S  S  L  F  V  P  F  H  H  F  S  *  L  T  L  K  I  T  I  A  *  I  F  N  S  I  V  F  F  K  I  I  L  C  V  M  W  F  I  P  *  C  L  L  E  Q  T  Y  C  I  L  T  C  T  Q  P  *  *  E  K  S  I  S  F  S  L  S  *  F  Q  Y  G  I  I  C  *  Y  Y  Q  P  L  Q  K  S  I  S  K  L  M  K  L  L  Y  L  L  *  N  P  M  L  L  P  I  L  T  I  S  C  Q  A  T  G  P  Q  L  L  L  F  A  I  G  L  E  S  P  A  A  L  A  I  K  E  L  *  P  W  I  F  L  I  W  D  *  *  A  P  S  L  L  T  W  E  I  C  P  F  W  F  L  S  I  S  V  A  T  A  S  K  E  F  C  H  E  S  W  L  I  C  I  D  W  S  L  *  M  S  L  L </second_frame>
            <third_frame>   K  A  M  L  C  L  S  K  R  V  T  L  V  F  K  M  V  F  *  I  *  *  *  L  T  I  S  I  D  F  H  W  S  D  S  I  L  L  F  Y  F  Y  M  L  R  N  F  H  G  K  Y  *  *  I  Q  L  *  H  H  H  C  L  S  L  S  T  I  S  L  D  *  P  *  R  *  Q  L  L  E  F  L  I  Q  L  Y  F  L  K  S  F  Y  V  *  C  G  L  Y  L  S  V  Y  W  N  K  H  T  V  F  *  H  V  H  N  H  D  E  K  N  Q  F  P  F  P  S  L  S  F  N  M  A  S  F  A  D  I  I  S  H  C  R  S  Q  S  Q  N  *  *  S  F  S  T  C  F  E  I  L  C  Y  F  R  Y  L  Q  Y  L  V  K  Q  L  D  L  N  Y  F  C  L  Q  L  D  W  S  H  L  R  L  S  P  S  K  S  Y  N  L  G  Y  F  *  Y  G  I  S  R  H  H  P  S  S  L  G  K  S  V  L  F  G  F  S  R  Y  Q  *  Q  Q  L  P  R  N  F  A  T  R  V  G  *  F  A  *  I  G  V  Y  K  C  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66364" stop="65891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHFMCNVVYTLVFTGTNILYSNMYTTMMRKINFLFPLLVSIWHHLLILSATAEVNLKTDEASLLALKSYVTSDTYNILSSNWTSTTSVCNWIGVTCGSRHQRVITLDISDMGLVGTIPPHLGNLSFLVSLDISSNSFQGILPRELANLHRLEFINVTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="68242" PGL_stop="67366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68242" e_stop="68081"/>
            <exon e_start="67986" e_stop="67438"/>
            <exon e_start="67376" e_stop="67366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.825" e_score="0.995"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68242" e_stop="68081" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="68080" i_stop="67987" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="67986" e_stop="67438" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.825">
            <gDNA_intron_boundary i_start="67437" i_stop="67377" i_length="61"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="67376" e_stop="67366" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68242" stop="68081"/>
              <exon start="67986" stop="67438"/>
              <exon start="67376" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCAGCACCTGTGATTCATTGTGATCTGAAGCCTAGCAATGTCTTGCTAGATGAAAACATGGTAGCTCATTTAAGTGACTTTGGCATTTCTAAACTACTCAGTGAAGATGAGAGTGATTTACACACTAAAACCTTAGCAACATTCGGCTACATTGCACCAG : AGTATGGAAGGGAAGGATTGCTGTCGCTAAAATGTGATGTTTATAGTTACGGGATCATGCTGATGGAAACATTCACGAGGAGAAGGCCGAACGATGAAATATTTGATGAAGATCTTAGTTTAAAGAAATGGGTGAGTGATTCACTCCCAGAGGCAACAATCAAAGTTGTAGATGCGAATTTTCTAACACCAGAAGATGAGAAATTCATGGAAAAGATAGATTGTGTAGCATCCATCATGAAAGTGGCACTGGATTGCTCTGCTGAATCTCCTGAAGAAAGGATCTACATGAAAGATGTTGTAGGAACACTACAAAAGATCAAGATTCAACTTCTTTCATGTTCCGCAAGTGCATAAAGACATTTGACTCATGTCACTTGAGGGTATAGAAAGTGTTTGGTTAACTTTTTAGCTGCATACCTAGACTGTTTTCCTTTCTAGCTGCATAAGATATTCCTATTCTTATTGAGATCCTTTGTGAATTTTGGCCTGTTTGGTTCCAAATTGCTTTTTCCTAATTCTCATGAAATAAATTTTATAATCACAATTA : GAAGAATCAAA</gDNA_template>
            <first_frame> A  Q  H  L  *  F  I  V  I  *  S  L  A  M  S  C  *  M  K  T  W  *  L  I  *  V  T  L  A  F  L  N  Y  S  V  K  M  R  V  I  Y  T  L  K  P  *  Q  H  S  A  T  L  H  Q  :  S  M  E  G  K  D  C  C  R  *  N  V  M  F  I  V  T  G  S  C  *  W  K  H  S  R  G  E  G  R  T  M  K  Y  L  M  K  I  L  V  *  R  N  G  *  V  I  H  S  Q  R  Q  Q  S  K  L  *  M  R  I  F  *  H  Q  K  M  R  N  S  W  K  R  *  I  V  *  H  P  S  *  K  W  H  W  I  A  L  L  N  L  L  K  K  G  S  T  *  K  M  L  *  E  H  Y  K  R  S  R  F  N  F  F  H  V  P  Q  V  H  K  D  I  *  L  M  S  L  E  G  I  E  S  V  W  L  T  F  *  L  H  T  *  T  V  F  L  S  S  C  I  R  Y  S  Y  S  Y  *  D  P  L  *  I  L  A  C  L  V  P  N  C  F  F  L  I  L  M  K  *  I  L  *  S  Q  L  :  E  E  S   </first_frame>
            <second_frame>  L  S  T  C  D  S  L  *  S  E  A  *  Q  C  L  A  R  *  K  H  G  S  S  F  K  *  L  W  H  F  *  T  T  Q  *  R  *  E  *  F  T  H  *  N  L  S  N  I  R  L  H  C  T  R :   V  W  K  G  R  I  A  V  A  K  M  *  C  L  *  L  R  D  H  A  D  G  N  I  H  E  E  K  A  E  R  *  N  I  *  *  R  S  *  F  K  E  M  G  E  *  F  T  P  R  G  N  N  Q  S  C  R  C  E  F  S  N  T  R  R  *  E  I  H  G  K  D  R  L  C  S  I  H  H  E  S  G  T  G  L  L  C  *  I  S  *  R  K  D  L  H  E  R  C  C  R  N  T  T  K  D  Q  D  S  T  S  F  M  F  R  K  C  I  K  T  F  D  S  C  H  L  R  V  *  K  V  F  G  *  L  F  S  C  I  P  R  L  F  S  F  L  A  A  *  D  I  P  I  L  I  E  I  L  C  E  F  W  P  V  W  F  Q  I  A  F  S  *  F  S  *  N  K  F  Y  N  H  N  * :   K  N  Q  </second_frame>
            <third_frame>   S  A  P  V  I  H  C  D  L  K  P  S  N  V  L  L  D  E  N  M  V  A  H  L  S  D  F  G  I  S  K  L  L  S  E  D  E  S  D  L  H  T  K  T  L  A  T  F  G  Y  I  A  P   : E  Y  G  R  E  G  L  L  S  L  K  C  D  V  Y  S  Y  G  I  M  L  M  E  T  F  T  R  R  R  P  N  D  E  I  F  D  E  D  L  S  L  K  K  W  V  S  D  S  L  P  E  A  T  I  K  V  V  D  A  N  F  L  T  P  E  D  E  K  F  M  E  K  I  D  C  V  A  S  I  M  K  V  A  L  D  C  S  A  E  S  P  E  E  R  I  Y  M  K  D  V  V  G  T  L  Q  K  I  K  I  Q  L  L  S  C  S  A  S  A  *  R  H  L  T  H  V  T  *  G  Y  R  K  C  L  V  N  F  L  A  A  Y  L  D  C  F  P  F  *  L  H  K  I  F  L  F  L  L  R  S  F  V  N  F  G  L  F  G  S  K  L  L  F  P  N  S  H  E  I  N  F  I  I  T  I   : R  R  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68240" stop="68081"/>
                    <exon start="67986" stop="67631"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAPVIHCDLKPSNVLLDENMVAHLSDFGISKLLSEDESDLHTKTLATFGYIAPEYGREGLLSLKCDVYSYGIMLMETFTRRRPNDEIFDEDLSLKKWVSDSLPEATIKVVDANFLTPEDEKFMEKIDCVASIMKVALDCSAESPEERIYMKDVVGTLQKIKIQLLSCSASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="68908" PGL_stop="68244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68908" e_stop="68244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68908" e_stop="68244" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68908" stop="68244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68908" stop="68265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68908" stop="68579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68908" stop="68583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGCTTGCAGGGTGAAATTCCTTTTAGTGGTCCTTTCAAGAACCTTTCCAGCCTGTCATTCATGTTCAATGAAGCATTGTGTGGTGCTCCAAGATTTCATGTCCCTTCGTGCCCCACTTCTTCAAACCATAGATCAAAGAGGAAGAAGTTACTTCTGATAGTCTTTCCTCTACTCGGAGCTGCTGTGACAATTGTTTTTGTAACATTGGCATTTGTGTGGATGAGGTACAGAAAAGAAGGAAATGTTCCAGTCCAAGCTGATTTGTTAGCTACAAGGGAAAGAATTTCATACTATGAAATCATACAAGCCACAAATGATTTTAGTGAGAGTAATTTCATTGGTTCAGGGAGTTTTGGTTCTGTTTACAAAGGAATTCTCATAAATGGGACTATCATTGCAGTTAAAGTGTTCAACCTACAAGTTGAAGGTGCATTCAAGAGTTTTGAAACAGAATGTGAAGTTCTTCGCAACCTTCGCCATAGGAATCTCACCAAAGTCATTAGCAGTTGCTCCAACCTTGATTTCAAGGCTTTAGTGCTCGAGTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCACACAACTACTTCTTAGACATCCTTCAAAGACTAAGCATAATGATTGATGTGGCATGTGCATTGGAATATCTCCACCATGGT</gDNA_template>
            <first_frame> T  A  C  R  V  K  F  L  L  V  V  L  S  R  T  F  P  A  C  H  S  C  S  M  K  H  C  V  V  L  Q  D  F  M  S  L  R  A  P  L  L  Q  T  I  D  Q  R  G  R  S  Y  F  *  *  S  F  L  Y  S  E  L  L  *  Q  L  F  L  *  H  W  H  L  C  G  *  G  T  E  K  K  E  M  F  Q  S  K  L  I  C  *  L  Q  G  K  E  F  H  T  M  K  S  Y  K  P  Q  M  I  L  V  R  V  I  S  L  V  Q  G  V  L  V  L  F  T  K  E  F  S  *  M  G  L  S  L  Q  L  K  C  S  T  Y  K  L  K  V  H  S  R  V  L  K  Q  N  V  K  F  F  A  T  F  A  I  G  I  S  P  K  S  L  A  V  A  P  T  L  I  S  R  L  *  C  S  S  T  C  L  M  G  A  L  K  S  G  C  I  H  T  T  T  S  *  T  S  F  K  D  *  A  *  *  L  M  W  H  V  H  W  N  I  S  T  M   </first_frame>
            <second_frame>  Q  L  A  G  *  N  S  F  *  W  S  F  Q  E  P  F  Q  P  V  I  H  V  Q  *  S  I  V  W  C  S  K  I  S  C  P  F  V  P  H  F  F  K  P  *  I  K  E  E  E  V  T  S  D  S  L  S  S  T  R  S  C  C  D  N  C  F  C  N  I  G  I  C  V  D  E  V  Q  K  R  R  K  C  S  S  P  S  *  F  V  S  Y  K  G  K  N  F  I  L  *  N  H  T  S  H  K  *  F  *  *  E  *  F  H  W  F  R  E  F  W  F  C  L  Q  R  N  S  H  K  W  D  Y  H  C  S  *  S  V  Q  P  T  S  *  R  C  I  Q  E  F  *  N  R  M  *  S  S  S  Q  P  S  P  *  E  S  H  Q  S  H  *  Q  L  L  Q  P  *  F  Q  G  F  S  A  R  V  H  A  *  W  E  P  *  K  V  V  V  F  T  Q  L  L  L  R  H  P  S  K  T  K  H  N  D  *  C  G  M  C  I  G  I  S  P  P  W  </second_frame>
            <third_frame>   S  L  Q  G  E  I  P  F  S  G  P  F  K  N  L  S  S  L  S  F  M  F  N  E  A  L  C  G  A  P  R  F  H  V  P  S  C  P  T  S  S  N  H  R  S  K  R  K  K  L  L  L  I  V  F  P  L  L  G  A  A  V  T  I  V  F  V  T  L  A  F  V  W  M  R  Y  R  K  E  G  N  V  P  V  Q  A  D  L  L  A  T  R  E  R  I  S  Y  Y  E  I  I  Q  A  T  N  D  F  S  E  S  N  F  I  G  S  G  S  F  G  S  V  Y  K  G  I  L  I  N  G  T  I  I  A  V  K  V  F  N  L  Q  V  E  G  A  F  K  S  F  E  T  E  C  E  V  L  R  N  L  R  H  R  N  L  T  K  V  I  S  S  C  S  N  L  D  F  K  A  L  V  L  E  Y  M  P  N  G  S  L  E  K  W  L  Y  S  H  N  Y  F  L  D  I  L  Q  R  L  S  I  M  I  D  V  A  C  A  L  E  Y  L  H  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68906" stop="68244"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQGEIPFSGPFKNLSSLSFMFNEALCGAPRFHVPSCPTSSNHRSKRKKLLLIVFPLLGAAVTIVFVTLAFVWMRYRKEGNVPVQADLLATRERISYYEIIQATNDFSESNFIGSGSFGSVYKGILINGTIIAVKVFNLQVEGAFKSFETECEVLRNLRHRNLTKVISSCSNLDFKALVLEYMPNGSLEKWLYSHNYFLDILQRLSIMIDVACALEYLHHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="75720" PGL_stop="78882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75720" e_stop="76276"/>
            <exon e_start="78731" e_stop="78882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75720" e_stop="76276" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.931">
            <gDNA_intron_boundary i_start="76277" i_stop="78730" i_length="2454"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="78731" e_stop="78882" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75720" stop="76154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76276"/>
              <exon start="78731" stop="78882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76276"/>
              <exon start="78731" stop="78779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75725" stop="76096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACAACAGTTGCTGAATCTTCTTCATCCATTCTGTATTCTCTTCTCTTTAATTGCATAAATATCAAATGACTCATTCTCTAACTTTAGCTTCTACAGCTCTAATTCGATACGGCATTGGTCCAAAAATTGGGGCTTTACCTAGGGCAAATATGCCATCGAGATCATCTTCAAGGTTATTCAGAATTCAAGCTGTGCAAGATAATGGGGGAGGGCCTCGGAGGCTAATAGATATTATTCGCAATGTTCCTGAGGTTTCGAGAAATTATTTCAAAACTCCTTCACGGAGGGCACTCTTTGGAGGTATATCATTACTGGGTGGATTTTATGTGGCCCAGACAATTTCTCTATCTTTTGGAGCTTTAGGAGTGAATGATGTGATTGCTGCTGTAGTGTGTGTCTTAATTACTGAATATGTGACGCGATTCTACTACACTCGACCTAAGGTGACTTTTCCGATTGCTCTTTTGAACAACTTCAAGATGGGTTTTACCTATGGTCTGTTCATTGATGCCTTCAAACTTGCCAGCTGAATTGATTGCCACACTTTTGTAGCA : GACATCTTTCATATTGAGCCTCTCATTAGGAGATTCAGCTGTGCAATTCAATGCCAACTCCAAAATAGAGGTCAGACAACTCAACTTTTTATCAAAATCAATCTCTTCAGGTTGCAATAAGGTGTCATCAATAATATCAGCTGGTGCTACAG</gDNA_template>
            <first_frame> S  T  T  V  A  E  S  S  S  S  I  L  Y  S  L  L  F  N  C  I  N  I  K  *  L  I  L  *  L  *  L  L  Q  L  *  F  D  T  A  L  V  Q  K  L  G  L  Y  L  G  Q  I  C  H  R  D  H  L  Q  G  Y  S  E  F  K  L  C  K  I  M  G  E  G  L  G  G  *  *  I  L  F  A  M  F  L  R  F  R  E  I  I  S  K  L  L  H  G  G  H  S  L  E  V  Y  H  Y  W  V  D  F  M  W  P  R  Q  F  L  Y  L  L  E  L  *  E  *  M  M  *  L  L  L  *  C  V  S  *  L  L  N  M  *  R  D  S  T  T  L  D  L  R  *  L  F  R  L  L  F  *  T  T  S  R  W  V  L  P  M  V  C  S  L  M  P  S  N  L  P  A  E  L  I  A  T  L  L  *  Q :   T  S  F  I  L  S  L  S  L  G  D  S  A  V  Q  F  N  A  N  S  K  I  E  V  R  Q  L  N  F  L  S  K  S  I  S  S  G  C  N  K  V  S  S  I  I  S  A  G  A  T  </first_frame>
            <second_frame>  Q  Q  Q  L  L  N  L  L  H  P  F  C  I  L  F  S  L  I  A  *  I  S  N  D  S  F  S  N  F  S  F  Y  S  S  N  S  I  R  H  W  S  K  N  W  G  F  T  *  G  K  Y  A  I  E  I  I  F  K  V  I  Q  N  S  S  C  A  R  *  W  G  R  A  S  E  A  N  R  Y  Y  S  Q  C  S  *  G  F  E  K  L  F  Q  N  S  F  T  E  G  T  L  W  R  Y  I  I  T  G  W  I  L  C  G  P  D  N  F  S  I  F  W  S  F  R  S  E  *  C  D  C  C  C  S  V  C  L  N  Y  *  I  C  D  A  I  L  L  H  S  T  *  G  D  F  S  D  C  S  F  E  Q  L  Q  D  G  F  Y  L  W  S  V  H  *  C  L  Q  T  C  Q  L  N  *  L  P  H  F  C  S   : R  H  L  S  Y  *  A  S  H  *  E  I  Q  L  C  N  S  M  P  T  P  K  *  R  S  D  N  S  T  F  Y  Q  N  Q  S  L  Q  V  A  I  R  C  H  Q  *  Y  Q  L  V  L  Q </second_frame>
            <third_frame>   N  N  S  C  *  I  F  F  I  H  S  V  F  S  S  L  *  L  H  K  Y  Q  M  T  H  S  L  T  L  A  S  T  A  L  I  R  Y  G  I  G  P  K  I  G  A  L  P  R  A  N  M  P  S  R  S  S  S  R  L  F  R  I  Q  A  V  Q  D  N  G  G  G  P  R  R  L  I  D  I  I  R  N  V  P  E  V  S  R  N  Y  F  K  T  P  S  R  R  A  L  F  G  G  I  S  L  L  G  G  F  Y  V  A  Q  T  I  S  L  S  F  G  A  L  G  V  N  D  V  I  A  A  V  V  C  V  L  I  T  E  Y  V  T  R  F  Y  Y  T  R  P  K  V  T  F  P  I  A  L  L  N  N  F  K  M  G  F  T  Y  G  L  F  I  D  A  F  K  L  A  S  *  I  D  C  H  T  F  V  A  :  D  I  F  H  I  E  P  L  I  R  R  F  S  C  A  I  Q  C  Q  L  Q  N  R  G  Q  T  T  Q  L  F  I  K  I  N  L  F  R  L  Q  *  G  V  I  N  N  I  S  W  C  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75773" stop="76252"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHKYQMTHSLTLASTALIRYGIGPKIGALPRANMPSRSSSRLFRIQAVQDNGGGPRRLIDIIRNVPEVSRNYFKTPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLITEYVTRFYYTRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="103814" PGL_stop="104094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103814" e_stop="104094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="103814" e_stop="104094" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103814" stop="104094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCAAAAGTACATATTTTGGACCATAATGAGGCCAATTGCTAAACATTAAAATTTCTAATTTCATGCTAGATTCGATACCGGACTATCATAGGAATGTTTATGGAACAGTAGAGACAAGGAAAAGTAGAATATAATATGTTGGAATTGCTACATTTACTTCAGTTCAATCTTGCTCTTACTGGATTTGAATCCTTCCTCTTCCTTTTCAGTTGATTGCCGACACGCCTGAACCCCTTAATTGATACAAGGCTCTGAGTATAGTTGGTAAGTGAAAGAA</gDNA_template>
            <first_frame> Q  L  K  S  T  Y  F  G  P  *  *  G  Q  L  L  N  I  K  I  S  N  F  M  L  D  S  I  P  D  Y  H  R  N  V  Y  G  T  V  E  T  R  K  S  R  I  *  Y  V  G  I  A  T  F  T  S  V  Q  S  C  S  Y  W  I  *  I  L  P  L  P  F  Q  L  I  A  D  T  P  E  P  L  N  *  Y  K  A  L  S  I  V  G  K  *  K   </first_frame>
            <second_frame>  N  S  K  V  H  I  L  D  H  N  E  A  N  C  *  T  L  K  F  L  I  S  C  *  I  R  Y  R  T  I  I  G  M  F  M  E  Q  *  R  Q  G  K  V  E  Y  N  M  L  E  L  L  H  L  L  Q  F  N  L  A  L  T  G  F  E  S  F  L  F  L  F  S  *  L  P  T  R  L  N  P  L  I  D  T  R  L  *  V  *  L  V  S  E  R  </second_frame>
            <third_frame>   T  Q  K  Y  I  F  W  T  I  M  R  P  I  A  K  H  *  N  F  *  F  H  A  R  F  D  T  G  L  S  *  E  C  L  W  N  S  R  D  K  E  K  *  N  I  I  C  W  N  C  Y  I  Y  F  S  S  I  L  L  L  L  D  L  N  P  S  S  S  F  S  V  D  C  R  H  A  *  T  P  *  L  I  Q  G  S  E  Y  S  W  *  V  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="110732" PGL_stop="111912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110732" e_stop="110925"/>
            <exon e_start="111143" e_stop="111912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110732" e_stop="110925" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.960">
            <gDNA_intron_boundary i_start="110926" i_stop="111142" i_length="217"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="111143" e_stop="111912" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110732" stop="110925"/>
              <exon start="111143" stop="111663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110733" stop="110925"/>
              <exon start="111143" stop="111626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110733" stop="110925"/>
              <exon start="111143" stop="111497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110882" stop="110925"/>
              <exon start="111143" stop="111877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111184" stop="111912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAACACAGCCCTTGAATTTGGTGAATGAAGAGTATGTAAGCAATGCAAATGACCCATGATAGTTGGTGACCACAAAATTTTGAAATGCAGTTATCACTTCTTCCGGGAAAGCTATTATGAAGAACTCCTCTATACTCCAAACAAACGAGGCAAGAACAAAATTTCCATCCAAGTCCTGTGCAATCCAGCAA : GGTCGTCATTGTGTACAGGGAACATCTTGTACTGCTCTATGGCAGGGTTCCATATGCAAATCATTCGACCGGAAGCAATAGTAGTAACTAAACAGATCAAGCCATTGATTGAACCTATGACAGTATAATCGGTCGTACAGGGTTCATTAAGCTTTATCAAGTTGCCAGGATTTTGTATATGGATCAAACGATTTATCTCCCCAGTCTGAACAAAGATACAATGGTTATCAGGGATTGAACTAAACCTCTTGCTATACAGATTGATAAACCAGGGGCTTGAAATCAGCATGGAATAGTCCTTATATAAGCACTTCAATCGCATCAGAGTTTTGACTGGTAATCTTGAAAAAATAACCCCAAGAATCTCATCGTTAAGACCCGGAATACCACCGGTAATTCGTCTTGCATTATTCATCTTATAAGGAAAATGGAGATTCTATTTCTGGTTGAGACAATCAATCAAACAGTTTTGAATGCAGAAAGTAGAGTATATTTCGCCCAAATCTAACTAAAAATCTTCAAGAAATTGCTGTGATTGAAGCACTCACCTTGAGAATCATGAGAGGCAGAAATCCAAAACCCAAAGAAGAAGAAACACTCAACACACTCTCTCTCCAGTGGAAACGATTATTTTTAACTGATTTTTTGCTTCTCAACTGATCTTTCTCTTTATTTATAGGGGCAGGAGACGTTTTTGACATGGAAAGCCAACTAAGCATTTCTGTGGATTAGTATATATAAATTCTATATTTACATCTTTATATGATTTT</gDNA_template>
            <first_frame> H  Q  H  S  P  *  I  W  *  M  K  S  M  *  A  M  Q  M  T  H  D  S  W  *  P  Q  N  F  E  M  Q  L  S  L  L  P  G  K  L  L  *  R  T  P  L  Y  S  K  Q  T  R  Q  E  Q  N  F  H  P  S  P  V  Q  S  S  K :   V  V  I  V  Y  R  E  H  L  V  L  L  Y  G  R  V  P  Y  A  N  H  S  T  G  S  N  S  S  N  *  T  D  Q  A  I  D  *  T  Y  D  S  I  I  G  R  T  G  F  I  K  L  Y  Q  V  A  R  I  L  Y  M  D  Q  T  I  Y  L  P  S  L  N  K  D  T  M  V  I  R  D  *  T  K  P  L  A  I  Q  I  D  K  P  G  A  *  N  Q  H  G  I  V  L  I  *  A  L  Q  S  H  Q  S  F  D  W  *  S  *  K  N  N  P  K  N  L  I  V  K  T  R  N  T  T  G  N  S  S  C  I  I  H  L  I  R  K  M  E  I  L  F  L  V  E  T  I  N  Q  T  V  L  N  A  E  S  R  V  Y  F  A  Q  I  *  L  K  I  F  K  K  L  L  *  L  K  H  S  P  *  E  S  *  E  A  E  I  Q  N  P  K  K  K  K  H  S  T  H  S  L  S  S  G  N  D  Y  F  *  L  I  F  C  F  S  T  D  L  S  L  Y  L  *  G  Q  E  T  F  L  T  W  K  A  N  *  A  F  L  W  I  S  I  Y  K  F  Y  I  Y  I  F  I  *  F  </first_frame>
            <second_frame>  I  N  T  A  L  E  F  G  E  *  R  V  C  K  Q  C  K  *  P  M  I  V  G  D  H  K  I  L  K  C  S  Y  H  F  F  R  E  S  Y  Y  E  E  L  L  Y  T  P  N  K  R  G  K  N  K  I  S  I  Q  V  L  C  N  P  A   : R  S  S  L  C  T  G  N  I  L  Y  C  S  M  A  G  F  H  M  Q  I  I  R  P  E  A  I  V  V  T  K  Q  I  K  P  L  I  E  P  M  T  V  *  S  V  V  Q  G  S  L  S  F  I  K  L  P  G  F  C  I  W  I  K  R  F  I  S  P  V  *  T  K  I  Q  W  L  S  G  I  E  L  N  L  L  L  Y  R  L  I  N  Q  G  L  E  I  S  M  E  *  S  L  Y  K  H  F  N  R  I  R  V  L  T  G  N  L  E  K  I  T  P  R  I  S  S  L  R  P  G  I  P  P  V  I  R  L  A  L  F  I  L  *  G  K  W  R  F  Y  F  W  L  R  Q  S  I  K  Q  F  *  M  Q  K  V  E  Y  I  S  P  K  S  N  *  K  S  S  R  N  C  C  D  *  S  T  H  L  E  N  H  E  R  Q  K  S  K  T  Q  R  R  R  N  T  Q  H  T  L  S  P  V  E  T  I  I  F  N  *  F  F  A  S  Q  L  I  F  L  F  I  Y  R  G  R  R  R  F  *  H  G  K  P  T  K  H  F  C  G  L  V  Y  I  N  S  I  F  T  S  L  Y  D  F </second_frame>
            <third_frame>   S  T  Q  P  L  N  L  V  N  E  E  Y  V  S  N  A  N  D  P  *  *  L  V  T  T  K  F  *  N  A  V  I  T  S  S  G  K  A  I  M  K  N  S  S  I  L  Q  T  N  E  A  R  T  K  F  P  S  K  S  C  A  I  Q  Q  :  G  R  H  C  V  Q  G  T  S  C  T  A  L  W  Q  G  S  I  C  K  S  F  D  R  K  Q  *  *  *  L  N  R  S  S  H  *  L  N  L  *  Q  Y  N  R  S  Y  R  V  H  *  A  L  S  S  C  Q  D  F  V  Y  G  S  N  D  L  S  P  Q  S  E  Q  R  Y  N  G  Y  Q  G  L  N  *  T  S  C  Y  T  D  *  *  T  R  G  L  K  S  A  W  N  S  P  Y  I  S  T  S  I  A  S  E  F  *  L  V  I  L  K  K  *  P  Q  E  S  H  R  *  D  P  E  Y  H  R  *  F  V  L  H  Y  S  S  Y  K  E  N  G  D  S  I  S  G  *  D  N  Q  S  N  S  F  E  C  R  K  *  S  I  F  R  P  N  L  T  K  N  L  Q  E  I  A  V  I  E  A  L  T  L  R  I  M  R  G  R  N  P  K  P  K  E  E  E  T  L  N  T  L  S  L  Q  W  K  R  L  F  L  T  D  F  L  L  L  N  *  S  F  S  L  F  I  G  A  G  D  V  F  D  M  E  S  Q  L  S  I  S  V  D  *  Y  I  *  I  L  Y  L  H  L  Y  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110787" stop="110925"/>
                    <exon start="111143" stop="111270"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMIVGDHKILKCSYHFFRESYYEELLYTPNKRGKNKISIQVLCNPARSSLCTGNILYCSMAGFHMQIIRPEAIVVTKQIKPLIEPMTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="117111" PGL_stop="117949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117111" e_stop="117117"/>
            <exon e_start="117202" e_stop="117949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117111" e_stop="117117" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117118" i_stop="117201" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="117202" e_stop="117949" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117111" stop="117117"/>
              <exon start="117202" stop="117949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATGG : GCGTACTTCCAGATGAAATCGGTAACCTTCAAGAGTTGTTGATGCTGAAGTTGGATTTCAATGACTTTAGTGGGTCGATCCCTGTTGGTATATTTAATGGCTCAACTCTTGTATCTATTACACTCACACAAAACCGCATTTCAGGTAATCTTCCCAACACTATAGGCAGGGGGTCACCCAATCTTGAACGAATTTTTCTAGGTGCAAATAACATTGATGGTCTTTTACCTAGTTCCATTTCAAATTTGTCTAAGCTTACTGTACTCGAACTTAGTGCAAATGCACTCACAGGTTCAATTCCTGACTTTCTAGGAAACTTAGGACTTATTGAAATTCTCAACTTGCAAGGTAACTTCTTCACTAGTGACTCTTCAATGTTGAGTTTTATTACTCCTTTGGCCAATTGTAAACACTTAAGAGAACTGATATTGTCTATCAATCCCCTAAATGCAATACTTCCAAAATCCATAGGGAATCTTTCTTCTCTTCAGACGTTTGAGGCAATAGGTTGTAATCTCAAAGGCCATATTCCAAATGAAATTGGAAATTTGAGAAATTTATCTTATTTGAAGCTGGATAAAAATGACTTTACTGGAATTGTCCCGACGACAATAAGTTCTTTGGAAAACTTCAACAGTTTTCACTTGGTACAAACAGAATAAGTGGTCCTTTCCCAATTGTTGTATGTGAGCTACCCAACTTGGGCTTGCTAAACCTTTCACAAAACCAAATGTGGGGAAATATTCCT</gDNA_template>
            <first_frame> L  M   : G  V  L  P  D  E  I  G  N  L  Q  E  L  L  M  L  K  L  D  F  N  D  F  S  G  S  I  P  V  G  I  F  N  G  S  T  L  V  S  I  T  L  T  Q  N  R  I  S  G  N  L  P  N  T  I  G  R  G  S  P  N  L  E  R  I  F  L  G  A  N  N  I  D  G  L  L  P  S  S  I  S  N  L  S  K  L  T  V  L  E  L  S  A  N  A  L  T  G  S  I  P  D  F  L  G  N  L  G  L  I  E  I  L  N  L  Q  G  N  F  F  T  S  D  S  S  M  L  S  F  I  T  P  L  A  N  C  K  H  L  R  E  L  I  L  S  I  N  P  L  N  A  I  L  P  K  S  I  G  N  L  S  S  L  Q  T  F  E  A  I  G  C  N  L  K  G  H  I  P  N  E  I  G  N  L  R  N  L  S  Y  L  K  L  D  K  N  D  F  T  G  I  V  P  T  T  I  S  S  L  E  N  F  N  S  F  H  L  V  Q  T  E  *  V  V  L  S  Q  L  L  Y  V  S  Y  P  T  W  A  C  *  T  F  H  K  T  K  C  G  E  I  F   </first_frame>
            <second_frame>  *  W  :  A  Y  F  Q  M  K  S  V  T  F  K  S  C  *  C  *  S  W  I  S  M  T  L  V  G  R  S  L  L  V  Y  L  M  A  Q  L  L  Y  L  L  H  S  H  K  T  A  F  Q  V  I  F  P  T  L  *  A  G  G  H  P  I  L  N  E  F  F  *  V  Q  I  T  L  M  V  F  Y  L  V  P  F  Q  I  C  L  S  L  L  Y  S  N  L  V  Q  M  H  S  Q  V  Q  F  L  T  F  *  E  T  *  D  L  L  K  F  S  T  C  K  V  T  S  S  L  V  T  L  Q  C  *  V  L  L  L  L  W  P  I  V  N  T  *  E  N  *  Y  C  L  S  I  P  *  M  Q  Y  F  Q  N  P  *  G  I  F  L  L  F  R  R  L  R  Q  *  V  V  I  S  K  A  I  F  Q  M  K  L  E  I  *  E  I  Y  L  I  *  S  W  I  K  M  T  L  L  E  L  S  R  R  Q  *  V  L  W  K  T  S  T  V  F  T  W  Y  K  Q  N  K  W  S  F  P  N  C  C  M  *  A  T  Q  L  G  L  A  K  P  F  T  K  P  N  V  G  K  Y  S  </second_frame>
            <third_frame>   D  G :   R  T  S  R  *  N  R  *  P  S  R  V  V  D  A  E  V  G  F  Q  *  L  *  W  V  D  P  C  W  Y  I  *  W  L  N  S  C  I  Y  Y  T  H  T  K  P  H  F  R  *  S  S  Q  H  Y  R  Q  G  V  T  Q  S  *  T  N  F  S  R  C  K  *  H  *  W  S  F  T  *  F  H  F  K  F  V  *  A  Y  C  T  R  T  *  C  K  C  T  H  R  F  N  S  *  L  S  R  K  L  R  T  Y  *  N  S  Q  L  A  R  *  L  L  H  *  *  L  F  N  V  E  F  Y  Y  S  F  G  Q  L  *  T  L  K  R  T  D  I  V  Y  Q  S  P  K  C  N  T  S  K  I  H  R  E  S  F  F  S  S  D  V  *  G  N  R  L  *  S  Q  R  P  Y  S  K  *  N  W  K  F  E  K  F  I  L  F  E  A  G  *  K  *  L  Y  W  N  C  P  D  D  N  K  F  F  G  K  L  Q  Q  F  S  L  G  T  N  R  I  S  G  P  F  P  I  V  V  C  E  L  P  N  L  G  L  L  N  L  S  Q  N  Q  M  W  G  N  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117111" stop="117117"/>
                    <exon start="117202" stop="117863"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVLPDEIGNLQELLMLKLDFNDFSGSIPVGIFNGSTLVSITLTQNRISGNLPNTIGRGSPNLERIFLGANNIDGLLPSSISNLSKLTVLELSANALTGSIPDFLGNLGLIEILNLQGNFFTSDSSMLSFITPLANCKHLRELILSINPLNAILPKSIGNLSSLQTFEAIGCNLKGHIPNEIGNLRNLSYLKLDKNDFTGIVPTTISSLENFNSFHLVQTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="118329" PGL_stop="118876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118329" e_stop="118876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="118329" e_stop="118876" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118329" stop="118876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAACTACACTCCTTTAATGTCTCATTCAACAGGTTACACGGGGAAATCCCGAGTGGTGGACCTTTTCTTAATCTCCCTTACCAGTCTTTCTTGTCGAATGAAGGATTGTGTGGTAATCCTCAAAAGCATGTCCCAGCTTGTCGTTCAAATTCAAAGAATCATTCCAATTCAAAGAAACGAAGAATAATATGGATTGTAGTTGTCTCTTCAGTTATCTCTATTATAGGGCTTGCTTCAGCAATAATTTTCGTGTTAATGCGACGTCAGGGTAAAGTAATCAAAGCTGAAGATGAGTGGTCTCCTGAGGTAGCACCACAGAGATTTTCTTACTATGAACTTCAAAGAGCAACTCAGGGGTTTGATGAAAATAACTTGCTAGGTAGTGGAGGTTTTGGTTCTGTTTTTAAAGGGACGTTGGCAGATGGGATGATACTAGCTGTCAAAGTTTTTAATGTGCAGATGGAAGGTACATTTCAAACCTTTGATAGAGAATGTGAAATCTTGAGGAATCTTCGTCACAGAAATCTCACAAAGATCATTAGCAGC</gDNA_template>
            <first_frame> S  N  Y  T  P  L  M  S  H  S  T  G  Y  T  G  K  S  R  V  V  D  L  F  L  I  S  L  T  S  L  S  C  R  M  K  D  C  V  V  I  L  K  S  M  S  Q  L  V  V  Q  I  Q  R  I  I  P  I  Q  R  N  E  E  *  Y  G  L  *  L  S  L  Q  L  S  L  L  *  G  L  L  Q  Q  *  F  S  C  *  C  D  V  R  V  K  *  S  K  L  K  M  S  G  L  L  R  *  H  H  R  D  F  L  T  M  N  F  K  E  Q  L  R  G  L  M  K  I  T  C  *  V  V  E  V  L  V  L  F  L  K  G  R  W  Q  M  G  *  Y  *  L  S  K  F  L  M  C  R  W  K  V  H  F  K  P  L  I  E  N  V  K  S  *  G  I  F  V  T  E  I  S  Q  R  S  L  A   </first_frame>
            <second_frame>  A  T  T  L  L  *  C  L  I  Q  Q  V  T  R  G  N  P  E  W  W  T  F  S  *  S  P  L  P  V  F  L  V  E  *  R  I  V  W  *  S  S  K  A  C  P  S  L  S  F  K  F  K  E  S  F  Q  F  K  E  T  K  N  N  M  D  C  S  C  L  F  S  Y  L  Y  Y  R  A  C  F  S  N  N  F  R  V  N  A  T  S  G  *  S  N  Q  S  *  R  *  V  V  S  *  G  S  T  T  E  I  F  L  L  *  T  S  K  S  N  S  G  V  *  *  K  *  L  A  R  *  W  R  F  W  F  C  F  *  R  D  V  G  R  W  D  D  T  S  C  Q  S  F  *  C  A  D  G  R  Y  I  S  N  L  *  *  R  M  *  N  L  E  E  S  S  S  Q  K  S  H  K  D  H  *  Q  </second_frame>
            <third_frame>   Q  L  H  S  F  N  V  S  F  N  R  L  H  G  E  I  P  S  G  G  P  F  L  N  L  P  Y  Q  S  F  L  S  N  E  G  L  C  G  N  P  Q  K  H  V  P  A  C  R  S  N  S  K  N  H  S  N  S  K  K  R  R  I  I  W  I  V  V  V  S  S  V  I  S  I  I  G  L  A  S  A  I  I  F  V  L  M  R  R  Q  G  K  V  I  K  A  E  D  E  W  S  P  E  V  A  P  Q  R  F  S  Y  Y  E  L  Q  R  A  T  Q  G  F  D  E  N  N  L  L  G  S  G  G  F  G  S  V  F  K  G  T  L  A  D  G  M  I  L  A  V  K  V  F  N  V  Q  M  E  G  T  F  Q  T  F  D  R  E  C  E  I  L  R  N  L  R  H  R  N  L  T  K  I  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118331" stop="118876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLHSFNVSFNRLHGEIPSGGPFLNLPYQSFLSNEGLCGNPQKHVPACRSNSKNHSNSKKRRIIWIVVVSSVISIIGLASAIIFVLMRRQGKVIKAEDEWSPEVAPQRFSYYELQRATQGFDENNLLGSGGFGSVFKGTLADGMILAVKVFNVQMEGTFQTFDRECEILRNLRHRNLTKIISS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="136838" PGL_stop="135399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136838" e_stop="136791"/>
            <exon e_start="136705" e_stop="136367"/>
            <exon e_start="135648" e_stop="135399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.847" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136838" e_stop="136791" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="0.939">
            <gDNA_intron_boundary i_start="136790" i_stop="136706" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136705" e_stop="136367" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.847" acc_prob="0.987">
            <gDNA_intron_boundary i_start="136366" i_stop="135649" i_length="718"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="135648" e_stop="135399" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136838" stop="136791"/>
              <exon start="136705" stop="136367"/>
              <exon start="135648" stop="135399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136686" stop="136367"/>
              <exon start="135648" stop="135428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTGTTGGGTGCATTGGTACAGATCTCGTGTCCTCACAGGATATG : TGCAACACGATTGTGAGTTCGCTGCTGGCCACCTGAAGAGATTTTCATTTCGTGAACTGCAAATTGCAACTGCAAATTTCAGCTCTAAGAACATACTAGGACAAGGTGGATTTGGAGTGGTCTACAAAGGATACCTTCCAAATAGGACAGTAGTGGCTGTCAAAAGATTGAGAGATCCAACTTTCACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATAGGCTTGGCTGTGCATCGGAACCTTCTACGTCTGTATGGATTCTGTACGACTCCCGAGGAAAGATTACTTATTTACCCTTATATGCCAAATGGGAGCGTTGCCGATTGCTTGAGAG : ACAATGGACGGGATAAACCGTTTTTGGATTGGAGAAAGCGCATGCATATAGCTCTTGGAGCTGCCAGAGGTCTTCTGTATTTGCATGAACAGTGTAATCCTAAAATAATTCACAGAGATGTTAAGGCAGCTAATATTCTGCTTGATGAAAGTTTTGAAGCTGTTGTTGGTGATTTTGGTCTTGCTAAGCTTTTAGACTGTAGAGATTCACATGTTACAACTGCAGTTCGTGGTACTATAGGTCATATAGC</gDNA_template>
            <first_frame> L  F  V  G  C  I  G  T  D  L  V  S  S  Q  D  M  :  C  N  T  I  V  S  S  L  L  A  T  *  R  D  F  H  F  V  N  C  K  L  Q  L  Q  I  S  A  L  R  T  Y  *  D  K  V  D  L  E  W  S  T  K  D  T  F  Q  I  G  Q  *  W  L  S  K  D  *  E  I  Q  L  S  L  E  K  C  S  F  K  Q  K  L  R  *  *  A  W  L  C  I  G  T  F  Y  V  C  M  D  S  V  R  L  P  R  K  D  Y  L  F  T  L  I  C  Q  M  G  A  L  P  I  A  *  E  :  T  M  D  G  I  N  R  F  W  I  G  E  S  A  C  I  *  L  L  E  L  P  E  V  F  C  I  C  M  N  S  V  I  L  K  *  F  T  E  M  L  R  Q  L  I  F  C  L  M  K  V  L  K  L  L  L  V  I  L  V  L  L  S  F  *  T  V  E  I  H  M  L  Q  L  Q  F  V  V  L  *  V  I  *  </first_frame>
            <second_frame>  C  L  L  G  A  L  V  Q  I  S  C  P  H  R  I  C :   A  T  R  L  *  V  R  C  W  P  P  E  E  I  F  I  S  *  T  A  N  C  N  C  K  F  Q  L  *  E  H  T  R  T  R  W  I  W  S  G  L  Q  R  I  P  S  K  *  D  S  S  G  C  Q  K  I  E  R  S  N  F  H  W  R  S  A  V  S  N  R  S  *  D  D  R  L  G  C  A  S  E  P  S  T  S  V  W  I  L  Y  D  S  R  G  K  I  T  Y  L  P  L  Y  A  K  W  E  R  C  R  L  L  E  R :   Q  W  T  G  *  T  V  F  G  L  E  K  A  H  A  Y  S  S  W  S  C  Q  R  S  S  V  F  A  *  T  V  *  S  *  N  N  S  Q  R  C  *  G  S  *  Y  S  A  *  *  K  F  *  S  C  C  W  *  F  W  S  C  *  A  F  R  L  *  R  F  T  C  Y  N  C  S  S  W  Y  Y  R  S  Y  S </second_frame>
            <third_frame>   V  C  W  V  H  W  Y  R  S  R  V  L  T  G  Y   : V  Q  H  D  C  E  F  A  A  G  H  L  K  R  F  S  F  R  E  L  Q  I  A  T  A  N  F  S  S  K  N  I  L  G  Q  G  G  F  G  V  V  Y  K  G  Y  L  P  N  R  T  V  V  A  V  K  R  L  R  D  P  T  F  T  G  E  V  Q  F  Q  T  E  V  E  M  I  G  L  A  V  H  R  N  L  L  R  L  Y  G  F  C  T  T  P  E  E  R  L  L  I  Y  P  Y  M  P  N  G  S  V  A  D  C  L  R   : D  N  G  R  D  K  P  F  L  D  W  R  K  R  M  H  I  A  L  G  A  A  R  G  L  L  Y  L  H  E  Q  C  N  P  K  I  I  H  R  D  V  K  A  A  N  I  L  L  D  E  S  F  E  A  V  V  G  D  F  G  L  A  K  L  L  D  C  R  D  S  H  V  T  T  A  V  R  G  T  I  G  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136836" stop="136791"/>
                    <exon start="136705" stop="136367"/>
                    <exon start="135648" stop="135401"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCWVHWYRSRVLTGYVQHDCEFAAGHLKRFSFRELQIATANFSSKNILGQGGFGVVYKGYLPNRTVVAVKRLRDPTFTGEVQFQTEVEMIGLAVHRNLLRLYGFCTTPEERLLIYPYMPNGSVADCLRDNGRDKPFLDWRKRMHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDCRDSHVTTAVRGTIGHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="139295" PGL_stop="138177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139295" e_stop="139117"/>
            <exon e_start="138842" e_stop="138710"/>
            <exon e_start="138613" e_stop="138542"/>
            <exon e_start="138319" e_stop="138177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139295" e_stop="139117" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="139116" i_stop="138843" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138842" e_stop="138710" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.998">
            <gDNA_intron_boundary i_start="138709" i_stop="138614" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138613" e_stop="138542" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138541" i_stop="138320" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="138319" e_stop="138177" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139295" stop="139117"/>
              <exon start="138842" stop="138710"/>
              <exon start="138613" stop="138542"/>
              <exon start="138319" stop="138177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGATGAATTCTAAAAAGGACCTTTTTCTGAAAGCTCTGCACCAAAATCTTTCTTTTGGGTAATTAGCTTTTTGGATCCAAATGGTAACTTTGCTACTCGTTTTCTCATTTCTTCATTGGGTGGCCACTACTCCAGTTTCCATGGGTTTTCTTTCACCTAAAGGTGTCAACTATGAAG : TGGCAGCATTGATGTCTATGAAGAATAAAATGAGAGATGAATATCATGTGTTAGATGGATGGGATATAAATTCTGTTGATCCTTGTACATGGTACATGGTTGGTTGTTCTTCAGAAGGCTTTGTTATTTCTCT : TGAAATGGCGAGTATGGGATTATCTGGCACACTTTCGCCTAGTATTGGGAATTTAACTCATCTTCGGACGAT : GTTGTTGCAGAATAATCATTTATCTGGTCCGATTCCTGCTGAAATTGGACAGCTCACTGAACTGCTGACCCTTGATTTGTCTGGTAATCAGTTTGATGGAGGAATTCCTAGGGCGTTGGGTCGCCTGGTTTATTTAAATTACT</gDNA_template>
            <first_frame> N  D  E  F  *  K  G  P  F  S  E  S  S  A  P  K  S  F  F  W  V  I  S  F  L  D  P  N  G  N  F  A  T  R  F  L  I  S  S  L  G  G  H  Y  S  S  F  H  G  F  S  F  T  *  R  C  Q  L  *  S :   G  S  I  D  V  Y  E  E  *  N  E  R  *  I  S  C  V  R  W  M  G  Y  K  F  C  *  S  L  Y  M  V  H  G  W  L  F  F  R  R  L  C  Y  F  S  :  *  N  G  E  Y  G  I  I  W  H  T  F  A  *  Y  W  E  F  N  S  S  S  D  D  :  V  V  A  E  *  S  F  I  W  S  D  S  C  *  N  W  T  A  H  *  T  A  D  P  *  F  V  W  *  S  V  *  W  R  N  S  *  G  V  G  S  P  G  L  F  K  L   </first_frame>
            <second_frame>  M  M  N  S  K  K  D  L  F  L  K  A  L  H  Q  N  L  S  F  G  *  L  A  F  W  I  Q  M  V  T  L  L  L  V  F  S  F  L  H  W  V  A  T  T  P  V  S  M  G  F  L  S  P  K  G  V  N  Y  E   : V  A  A  L  M  S  M  K  N  K  M  R  D  E  Y  H  V  L  D  G  W  D  I  N  S  V  D  P  C  T  W  Y  M  V  G  C  S  S  E  G  F  V  I  S  L :   E  M  A  S  M  G  L  S  G  T  L  S  P  S  I  G  N  L  T  H  L  R  T  M :   L  L  Q  N  N  H  L  S  G  P  I  P  A  E  I  G  Q  L  T  E  L  L  T  L  D  L  S  G  N  Q  F  D  G  G  I  P  R  A  L  G  R  L  V  Y  L  N  Y  </second_frame>
            <third_frame>   *  *  I  L  K  R  T  F  F  *  K  L  C  T  K  I  F  L  L  G  N  *  L  F  G  S  K  W  *  L  C  Y  S  F  S  H  F  F  I  G  W  P  L  L  Q  F  P  W  V  F  F  H  L  K  V  S  T  M  K  :  W  Q  H  *  C  L  *  R  I  K  *  E  M  N  I  M  C  *  M  D  G  I  *  I  L  L  I  L  V  H  G  T  W  L  V  V  L  Q  K  A  L  L  F  L   : L  K  W  R  V  W  D  Y  L  A  H  F  R  L  V  L  G  I  *  L  I  F  G  R   : C  C  C  R  I  I  I  Y  L  V  R  F  L  L  K  L  D  S  S  L  N  C  *  P  L  I  C  L  V  I  S  L  M  E  E  F  L  G  R  W  V  A  W  F  I  *  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139231" stop="139117"/>
                    <exon start="138842" stop="138710"/>
                    <exon start="138613" stop="138542"/>
                    <exon start="138319" stop="138178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAFWIQMVTLLLVFSFLHWVATTPVSMGFLSPKGVNYEVAALMSMKNKMRDEYHVLDGWDINSVDPCTWYMVGCSSEGFVISLEMASMGLSGTLSPSIGNLTHLRTMLLQNNHLSGPIPAEIGQLTELLTLDLSGNQFDGGIPRALGRLVYLNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="144186" PGL_stop="141552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144186" e_stop="144103"/>
            <exon e_start="143874" e_stop="143773"/>
            <exon e_start="142150" e_stop="141552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="144186" e_stop="144103" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="144102" i_stop="143875" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="143874" e_stop="143773" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="143772" i_stop="142151" i_length="1622"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142150" e_stop="141552" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144186" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144186" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144186" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144186" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144161" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144161" stop="144103"/>
              <exon start="143874" stop="143773"/>
              <exon start="142150" stop="141915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143811" stop="143773"/>
              <exon start="142150" stop="141574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143807" stop="143773"/>
              <exon start="142150" stop="141665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142144" stop="141660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142144" stop="141660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142118" stop="141567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142081" stop="141588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142068" stop="141588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141970" stop="141552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141966" stop="141588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141957" stop="141567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141923" stop="141574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141883" stop="141574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCCACAAACGGATGCCTCCTGAAGCAATTGACCTTGCTTCTCGGCTACTGCAGTACTCACCAAGTCTACGTTGCACTGCA : CTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTTCGTGAACCAAATGCACGGCTTCCCAATGGTCGCCCATTGCCCCCTCTCTTCAATTTTAAGCAGGAG : TTATCTGGTGCCTCTCCGGACCTCGTAAACAGGTTGATACCAGACCATATAAAAAGACAGATGGGCCTGCATCTTTTTGCATCCCACGGCGACATGACGTGAAGTATATGTTTAGTGAAGTATACTAGTTTATGATCTATATATGAAGGGATCCAAGTGACACCCCTTCCAGAGCAGAGGAGTCCAGCATGACAGCGACAGTATATCCTGGTCGAAAAGGACAATGTAATGGGGCTGCAGTGCATTTTAGTTCTGTACTTTGTATTATCTTTTTTGTTCCACTCTTCAAAGTCTTCCCATCTTAGTAGCCAACTAGTGAAAAGGAAATATGTTTTTGTACATGTTTGTTAGTAGTAAATTGACCAGAAAGCTTCCGGGGACACGTTTGAATATGTATGGACAAGTTGCAAGGCTCCAAAAGGATTGCCAGGACTTGAAAGGGCAGTATTTTTTTTTCCCGTAAGTTTATATCTCACTTCAGTTTGTATTTAGCAGTCTACTTTGAAAAGAGTTGCGAGCAAATTTGTGTTACAGTTGCTCTATGTGATTATGATCAATCAAACGTATCTATTTTGTTGCATCTTGTCATTTAAACCTTA</gDNA_template>
            <first_frame> V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  P  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  L  P  P  L  F  N  F  K  Q  E  :  L  S  G  A  S  P  D  L  V  N  R  L  I  P  D  H  I  K  R  Q  M  G  L  H  L  F  A  S  H  G  D  M  T  *  S  I  C  L  V  K  Y  T  S  L  *  S  I  Y  E  G  I  Q  V  T  P  L  P  E  Q  R  S  P  A  *  Q  R  Q  Y  I  L  V  E  K  D  N  V  M  G  L  Q  C  I  L  V  L  Y  F  V  L  S  F  L  F  H  S  S  K  S  S  H  L  S  S  Q  L  V  K  R  K  Y  V  F  V  H  V  C  *  *  *  I  D  Q  K  A  S  G  D  T  F  E  Y  V  W  T  S  C  K  A  P  K  G  L  P  G  L  E  R  A  V  F  F  F  P  V  S  L  Y  L  T  S  V  C  I  *  Q  S  T  L  K  R  V  A  S  K  F  V  L  Q  L  L  Y  V  I  M  I  N  Q  T  Y  L  F  C  C  I  L  S  F  K  P   </first_frame>
            <second_frame>  F  S  T  N  G  C  L  L  K  Q  L  T  L  L  L  G  Y  C  S  T  H  Q  V  Y  V  A  L  H :   L  K  H  V  L  I  L  S  L  M  N  F  V  N  Q  M  H  G  F  P  M  V  A  H  C  P  L  S  S  I  L  S  R  S :   Y  L  V  P  L  R  T  S  *  T  G  *  Y  Q  T  I  *  K  D  R  W  A  C  I  F  L  H  P  T  A  T  *  R  E  V  Y  V  *  *  S  I  L  V  Y  D  L  Y  M  K  G  S  K  *  H  P  F  Q  S  R  G  V  Q  H  D  S  D  S  I  S  W  S  K  R  T  M  *  W  G  C  S  A  F  *  F  C  T  L  Y  Y  L  F  C  S  T  L  Q  S  L  P  I  L  V  A  N  *  *  K  G  N  M  F  L  Y  M  F  V  S  S  K  L  T  R  K  L  P  G  T  R  L  N  M  Y  G  Q  V  A  R  L  Q  K  D  C  Q  D  L  K  G  Q  Y  F  F  F  P  *  V  Y  I  S  L  Q  F  V  F  S  S  L  L  *  K  E  L  R  A  N  L  C  Y  S  C  S  M  *  L  *  S  I  K  R  I  Y  F  V  A  S  C  H  L  N  L  </second_frame>
            <third_frame>   F  P  Q  T  D  A  S  *  S  N  *  P  C  F  S  A  T  A  V  L  T  K  S  T  L  H  C   : T  *  S  M  C  S  S  F  L  *  *  T  S  *  T  K  C  T  A  S  Q  W  S  P  I  A  P  S  L  Q  F  *  A  G   : V  I  W  C  L  S  G  P  R  K  Q  V  D  T  R  P  Y  K  K  T  D  G  P  A  S  F  C  I  P  R  R  H  D  V  K  Y  M  F  S  E  V  Y  *  F  M  I  Y  I  *  R  D  P  S  D  T  P  S  R  A  E  E  S  S  M  T  A  T  V  Y  P  G  R  K  G  Q  C  N  G  A  A  V  H  F  S  S  V  L  C  I  I  F  F  V  P  L  F  K  V  F  P  S  *  *  P  T  S  E  K  E  I  C  F  C  T  C  L  L  V  V  N  *  P  E  S  F  R  G  H  V  *  I  C  M  D  K  L  Q  G  S  K  R  I  A  R  T  *  K  G  S  I  F  F  S  R  K  F  I  S  H  F  S  L  Y  L  A  V  Y  F  E  K  S  C  E  Q  I  C  V  T  V  A  L  C  D  Y  D  Q  S  N  V  S  I  L  L  H  L  V  I  *  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144186" stop="144103"/>
                    <exon start="143874" stop="143773"/>
                    <exon start="142150" stop="142049"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPDLVNRLIPDHIKRQMGLHLFASHGDMT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144185" stop="144103"/>
                    <exon start="143874" stop="143773"/>
                    <exon start="142150" stop="142123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSTNGCLLKQLTLLLGYCSTHQVYVALHLKHVLILSLMNFVNQMHGFPMVAHCPLSSILSRSYLVPLRTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="141567" PGL_stop="142144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141567" e_stop="142144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="141567" e_stop="142144" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141567" stop="142122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141662" stop="142144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATGCAACAAAATAGATACGTTTGATTGATCATAATCACATAGAGCAACTGTAACACAAATTTGCTCGCAACTCTTTTCAAAGTAGACTGCTAAATACAAACTGAAGTGAGATATAAACTTACGGGAAAAAAAAATACTGCCCTTTCAAGTCCTGGCAATCCTTTTGGAGCCTTGCAACTTGTCCATACATATTCAAACGTGTCCCCGGAAGCTTTCTGGTCAATTTACTACTAACAAACATGTACAAAAACATATTTCCTTTTCACTAGTTGGCTACTAAGATGGGAAGACTTTGAAGAGTGGAACAAAAAAGATAATACAAAGTACAGAACTAAAATGCACTGCAGCCCCATTACATTGTCCTTTTCGACCAGGATATACTGTCGCTGTCATGCTGGACTCCTCTGCTCTGGAAGGGGTGTCACTTGGATCCCTTCATATATAGATCATAAACTAGTATACTTCACTAAACATATACTTCACGTCATGTCGCCGTGGGATGCAAAAAGATGCAGGCCCATCTGTCTTTTTATATGGTCTGGTATCAACCTGTTTACGAGGTCCGGAGAGGCACC</gDNA_template>
            <first_frame> K  M  Q  Q  N  R  Y  V  *  L  I  I  I  T  *  S  N  C  N  T  N  L  L  A  T  L  F  K  V  D  C  *  I  Q  T  E  V  R  Y  K  L  T  G  K  K  N  T  A  L  S  S  P  G  N  P  F  G  A  L  Q  L  V  H  T  Y  S  N  V  S  P  E  A  F  W  S  I  Y  Y  *  Q  T  C  T  K  T  Y  F  L  F  T  S  W  L  L  R  W  E  D  F  E  E  W  N  K  K  D  N  T  K  Y  R  T  K  M  H  C  S  P  I  T  L  S  F  S  T  R  I  Y  C  R  C  H  A  G  L  L  C  S  G  R  G  V  T  W  I  P  S  Y  I  D  H  K  L  V  Y  F  T  K  H  I  L  H  V  M  S  P  W  D  A  K  R  C  R  P  I  C  L  F  I  W  S  G  I  N  L  F  T  R  S  G  E  A   </first_frame>
            <second_frame>  R  C  N  K  I  D  T  F  D  *  S  *  S  H  R  A  T  V  T  Q  I  C  S  Q  L  F  S  K  *  T  A  K  Y  K  L  K  *  D  I  N  L  R  E  K  K  I  L  P  F  Q  V  L  A  I  L  L  E  P  C  N  L  S  I  H  I  Q  T  C  P  R  K  L  S  G  Q  F  T  T  N  K  H  V  Q  K  H  I  S  F  S  L  V  G  Y  *  D  G  K  T  L  K  S  G  T  K  K  I  I  Q  S  T  E  L  K  C  T  A  A  P  L  H  C  P  F  R  P  G  Y  T  V  A  V  M  L  D  S  S  A  L  E  G  V  S  L  G  S  L  H  I  *  I  I  N  *  Y  T  S  L  N  I  Y  F  T  S  C  R  R  G  M  Q  K  D  A  G  P  S  V  F  L  Y  G  L  V  S  T  C  L  R  G  P  E  R  H  </second_frame>
            <third_frame>   D  A  T  K  *  I  R  L  I  D  H  N  H  I  E  Q  L  *  H  K  F  A  R  N  S  F  Q  S  R  L  L  N  T  N  *  S  E  I  *  T  Y  G  K  K  K  Y  C  P  F  K  S  W  Q  S  F  W  S  L  A  T  C  P  Y  I  F  K  R  V  P  G  S  F  L  V  N  L  L  L  T  N  M  Y  K  N  I  F  P  F  H  *  L  A  T  K  M  G  R  L  *  R  V  E  Q  K  R  *  Y  K  V  Q  N  *  N  A  L  Q  P  H  Y  I  V  L  F  D  Q  D  I  L  S  L  S  C  W  T  P  L  L  W  K  G  C  H  L  D  P  F  I  Y  R  S  *  T  S  I  L  H  *  T  Y  T  S  R  H  V  A  V  G  C  K  K  M  Q  A  H  L  S  F  Y  M  V  W  Y  Q  P  V  Y  E  V  R  R  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M05.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141804" stop="142142"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTCTKTYFLFTSWLLRWEDFEEWNKKDNTKYRTKMHCSPITLSFSTRIYCRCHAGLLCSGRGVTWIPSYIDHKLVYFTKHILHVMSPWDAKRCRPICLFIWSGINLFTRSGEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 129 chains have been computed
$ 
$ memory statistics:
$ 162456 bytes spliced alignments in total
$ 81 spliced alignments have been stored
$ 2005 bytes was the average size of a spliced alignment
$ 36064 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1387 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 142 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:03:39
-->
