<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:00:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364294" ref_strand="+" ref_description="SGN-E364294 [cLPP-20-I16]">
      <seq>aaaaaacttgtagctcaacgtcttttcgattcatacaaaattagtcgtccttccctatcaacatgccgtatttgttcctcatccatgaccaaatcgatggcttctcctaatcctgaaaggatagccccagatcccggcgagggtgcttttttccgtcgatctctccaccgaagctctttgttccaatcattagcaacctcgtcggagctccggtcttttcccatcggtgaaaagctccgtcaggaattgagagggatggacattggtagagataggataagactggatgcactcatctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="8819" stop="9720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9119" g_stop="9420" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E364294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9119" e_stop="9420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACC</genome_strand>
        <mrna_strand>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCATCCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331524" ref_strand="+" ref_description="SGN-E331524 [cTOD-9-M22]">
      <seq>aaggatagccccagatcccggcgagggtgcttttttccgtcgatctctccaccgaagctctttgttccaatcattagcaacctcgtcggagctccggtcttttcccatcggtgaaaagctccgtcaggaattgagagggatggacattggtagagataggataagactggatgcactcatctcaccgccgcaacaaaaattgttgccggagattgagtcagaagccgaggaggagaaattcacggtggcggatgcaaagaaggttatgagattggcacaactggaggtggtgaaatcgaggctgaggcagatggagaatgactggatttcttttccggaattttttcagatctgcaatggcgcttcttcaaactccgatcaagccatagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggttggttttctattatttttttttccgattcatgctttttccccttataaaattttcaatgtggatttccataacttgccatgatacagattttacaagatgtctatgtgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="8935" stop="10113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9235" g_stop="9813" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E331524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9235" e_stop="9813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTA</genome_strand>
        <mrna_strand>AAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTA-TTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203400" ref_strand="+" ref_description="SGN-E203400 [cLEB-3-H16]">
      <seq>gcacgagatagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="9314" stop="10727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9613" g_stop="9697" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9698" i_stop="9934" i_length="237">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9935" g_stop="10427" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="578" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E203400" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9613" e_stop="9697"/>
          <exon e_start="9935" e_stop="10427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</genome_strand>
        <mrna_strand>GCACGAGATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG.............................................................................................................................................................................................................................................GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555710" ref_strand="+" ref_description="SGN-E555710 [cTSD-1-C24]">
      <seq>gccatgatacagattttacaagatgtctatgtgcattattgtactgctgagaagtattgataagttgtaacaaatattactactttttttttttagtttgtgcattacaagtctaccgaaaactgatagaatttcatctattctctatgtttttcgacaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgtgataaggcgcgtgaagtggagttctattgttttacccaagcattttggtcccttgttttgttgctacaggtggtgaaagccatggaaggcttaatgccaaggcctttggctcagccaaatgacccacaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="9476" stop="10863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9776" g_stop="10563" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E555710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9776" e_stop="10563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTAC-TTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</genome_strand>
        <mrna_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554880" ref_strand="+" ref_description="SGN-E554880 [cTSC-5-L17]">
      <seq>gccatgatacagattttacaagatgtctatgtgcattattgtactgctgagaagtattgataagttgtaacaaatattactactttttttttttagtttgtgcattacaagtctaccgaaaactgatagaatttcatctattctctatgtttttcgacaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgtgataaggcgcgtgaagtggagttctattgttttacccaagcattttggtcccttggtttgttgctacaggtggtgaaagccatggaaggcttaaggccaaggcctttggctcagccaaatggaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="9476" stop="10853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9776" g_stop="10553" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E554880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9776" e_stop="10553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTAC-TTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAAT-GACCCA</genome_strand>
        <mrna_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGGTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAAGGCCAAGGCCTTTGGCTCAGCCAAATGGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728633" ref_strand="+" ref_description="SGN-E728633 [LA18BG11]">
      <seq>gaacatttcactcaaagcctcgtaaaagaatcggagctactactggtgtaccaaaaagtctagcagtggaactacgcagtcttttgtgcaaaacacgttaattcattatcaactttctggcctttttaatttcaaatcatttctccatctcattgcaatttgttcgatgattcacatcgtgcgttattatctctcccagcacccttctgttgtaaattttcgttggagtcatagccaatcatggggtaacacgtggttcttcctcttcacctccattgctgcctatgttatcttctccctcttcctccacctttttctctgcctcctcttccgcaaccgccgtcctctccctctcggccctatccctgccgttcactccctctctatggtcctaatctccctcaccatcttcaccggcatactcctctccgccgccgctgaaatccgcgaaactcgatggttctggcgccgtaacaaaaccaccgctttccaatggctcctctgtttccctctcggcacgcgcccttccggacgtgtcttcttttggtcctacattttctacctatctcgcttcctccacacgctacgtactttcttctccattctccgtcgtcgaagactctccttctttcaactcttcaaccactccatactcatatttatgtccttcctgtggctagaattctcgcaatcgtttcaagtacttgcaatactatttacaacgcttttatattctgcggtttacggatacagattttggacggcgattggattgccaagcgcgtgtttcccctttgttgtaagctgtcagattctgttactgggatgtcacgttgtgtgccatgttggggtgcttttgctccatttcatgaaaggtgggtgtaacggaatgggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="21090" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20790" g_stop="19896" g_length="895"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E728633" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20790" e_stop="19896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGTTACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATTGGG</genome_strand>
        <mrna_strand>GAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGATACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746781" ref_strand="+" ref_description="SGN-E746781 [GI|47104501]">
      <seq>atttgaccgtctcccgggtataactgaaattagagatgaatttaggtaagaactctgggagatagacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagcttccagtttcatggatttcctggtccgacagcatatcctaccgcatcaaatcaccattttggatatactcctgcatatcacgggccacatgttcgtaacgctcaagacactgctcaaggacaagcagatagcaatctcaagttaatgtttttacttgttggttttcttgtgctaatttatttgttaggctaaagaatggattcagtctatccctgatgctaatgttggctatcagattttgtgcatgtggatatgtcaattctgcactcaccttgaagttactactaactttggtgattttatagatgcgagcactctgttactttaatgtaacaagtttatatctgtgtaatgtgtatattttgtatacttaaagtggttctagctcgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22371" stop="36272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22671" g_stop="22872" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24764" g_length="916"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="1118" r_length="916" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24765" i_stop="25525" i_length="761">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25526" g_stop="25540" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1133" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E746781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1133</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22671" e_stop="22872"/>
          <exon e_start="23849" e_stop="24764"/>
          <exon e_start="25526" e_stop="25540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTTATTTTTGCACCTTCTGTTGGGTAAGGATACCAAAGTAACACATGCTCTTGATGGCTTGTAATGATTTTTGGTCATCTGCTTAGTTGGGTGGTTATAACCTCATTTGTTTGTGATGTTGGACAGTACGGTGAAGGCATATTTGTGATTTTTAGTTCTATTAATCATAGTTCATTCTCTAACCCCTGCTTTACCCTAAAGAAAATAGAGGATTTACGATAGTGGAATAGCAGTGTGGCTACTTGTGTTTTGATTTGAATTTGATTGATAATACTTTGCCCTTGAATAACGAAAAATTTTGCAGGGCTTCACGTTTGGTTGGTGTCTGTACAAAATAGGTTAGGGTGAACGTATGACAAATGTAATGATAAAAGCATTCCATGAGAAGTTTAGAAAATATAGTTGGATTAATGTGATAAGGTGGCAAGTCCTTGTCCAGTTTCCAGATAGTTCAGTTTCATCTTTAATGAGTTCTGTATGACAGTTTGGAGGAACTATTCTATTACCTCTTTGAAATGTTCTTTGCTCGTTTGCAGTGCCTGTTTTTGCCTACCTTGTGAACAGTGTCTACAGTAGATCAGATCAGTGATGAGGAGAATTTCCATTGTTGACAGGTATCGTCTTGACCGTCTCATAGTTGTATTCCTTTTTTATTGAACTGCTTACTGTTAGGTAGTAGTTATAATGGTGAATATTGTTAGGTTATCAGGTTGTGGTTTTGGGATCATAGATTAGTTACTTCTCAAATATTGCACTGATGTCAGAGAAAAAGTAAATAA</genome_strand>
        <mrna_strand>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200778" ref_strand="+" ref_description="SGN-E200778 [cLEC-9-K14]">
      <seq>tttgaccgtctcccgggtataactgaaattagagatgaatttaggtaagaactctgggagatagacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatggngaacaatgatgctgggtgatttttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22372" stop="24284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22672" g_stop="22872" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="23984" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="340" r_length="139" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E200778" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22672" e_stop="22872"/>
          <exon e_start="23849" e_stop="23984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGG-GAACAATGATGCT-GGTGA-TTTTGAAT</genome_strand>
        <mrna_strand>TTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGNGAACAATGATGCTGGGTGATTTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312318" ref_strand="+" ref_description="SGN-E312318 [cTOA-5-G1]">
      <seq>agatagacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22430" stop="24586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22730" g_stop="22872" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24286" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="581" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E312318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22730" e_stop="22872"/>
          <exon e_start="23849" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATG</genome_strand>
        <mrna_strand>AGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302005" ref_strand="+" ref_description="SGN-E302005 [cLEX-3-E2]">
      <seq>tttgacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22433" stop="24406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22732" g_stop="22872" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24106" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="399" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E302005" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22732" e_stop="22872"/>
          <exon e_start="23849" e_stop="24106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGT</genome_strand>
        <mrna_strand>TTTGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710554" ref_strand="+" ref_description="SGN-E710554 [FA55DB06]">
      <seq>gacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagcttccagtttcatggatttcctggtccgacagcatatcccaccgcatcaaatcaccattttggatatactcctgcatatcacgggccacatgttcgtaacgctcaagacactgctcaaggacaagcagatagcaatctcaagttaatgtttttacttgttggttttcttgtgctaatttatttgttaagctaaagaatggattcagtctatccctgatgctaatgttggctatcagaatttgtgcatgtggatatgtcaattctgcactcaccttaaattactactaactttggggatttataaatgcgaacactctgttactttaatgtaacaattttatatctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22435" stop="25020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22735" g_stop="22872" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24729" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="1017" r_length="879" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E710554" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1019</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22735" e_stop="22872"/>
          <exon e_start="23849" e_stop="24729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTG</genome_strand>
        <mrna_strand>GACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCCACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAAGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGAATTTGTGCATGTGGATATGTCAATTCTGCACTCACCTT-AAATTACTACTAACTTTGGGGA-TTTATAAATGCGAACACTCTGTTACTTTAATGTAACAATTTTATATCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333461" ref_strand="+" ref_description="SGN-E333461 [cTOD-20-A10]">
      <seq>cagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaagaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22437" stop="24539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22737" g_stop="22872" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24239" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="527" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E333461" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22737" e_stop="22872"/>
          <exon e_start="23849" e_stop="24239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTC</genome_strand>
        <mrna_strand>CAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAAGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700980" ref_strand="+" ref_description="SGN-E700980 [FA14CG10]">
      <seq>gggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagcttccagtttcatggatttcctggtccgacagcatatcctaccgcatcaaatcaccattttggatatactcctgcataatcagggccacatgttcgtaacgctcaagacactgctcaaggacaagcagatagcaatctcaagttaatgtttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22439" stop="24827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22739" g_stop="22872" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24527" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="813" r_length="679" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E700980" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22739" e_stop="22872"/>
          <exon e_start="23849" e_stop="24527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTAC</genome_strand>
        <mrna_strand>GGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATAATCAGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722387" ref_strand="+" ref_description="SGN-E722387 [FC17AE02]">
      <seq>atcggccgaattcccatggggatccgatggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagcttccagtttcatggatttcctggtccgacagcatatcctaccgcatcaaatcaccattttggatatactcctgcatatcacgggccacatgttcgtaacgctcaagacactgctcaaggacaagcagatagcaatctcaagttaatgtttttacttgttggttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22438" stop="24839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22740" g_stop="22872" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="161" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24539" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="852" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E722387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22740" e_stop="22872"/>
          <exon e_start="23849" e_stop="24539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTC</genome_strand>
        <mrna_strand>GGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288404" ref_strand="+" ref_description="SGN-E288404 [cLES-16-H17]">
      <seq>gaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22443" stop="24578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22743" g_stop="22872" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24278" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="560" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E288404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22743" e_stop="22872"/>
          <exon e_start="23849" e_stop="24278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTG</genome_strand>
        <mrna_strand>GAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232039" ref_strand="+" ref_description="SGN-E232039 [cLED-7-O8]">
      <seq>tagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22452" stop="24673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22752" g_stop="22872" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24373" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="646" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E232039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22752" e_stop="22872"/>
          <exon e_start="23849" e_stop="24373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGC</genome_strand>
        <mrna_strand>TAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318743" ref_strand="+" ref_description="SGN-E318743 [cTOB-9-L18]">
      <seq>tatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22466" stop="24364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22766" g_stop="22872" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24064" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="323" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E318743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22766" e_stop="22872"/>
          <exon e_start="23849" e_stop="24064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGA</genome_strand>
        <mrna_strand>TATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260333" ref_strand="+" ref_description="SGN-E260333 [cLEG-53-O8]">
      <seq>aaaatatacacattacacagatataaacttgttacattaaagtaacagagtgctcgcatctataaaatcaccaaagttagtagtaacttcaaggtgagtgcagaattgacatatccacatgcacaaaatctgatagccaacattagcatcagggatagactgaatccattctttagcctaacaaataaattagcacaagaaaaccaacaagtaaaaacattaacttgagattgctatctgcttgtccttgagcagtgtcttgagcgttacgaacatgtggcccgtgatatgcaggagtatatccaaaatggtgatttgatgcggtaggatatgctgtcggaccaggaaatccatgaaactggaagctgagcaatgaagggagcaatccaccaaaaccagcagacatagtaaaattaccaaatcttgcagttgctgttggaaacaatcctcccatgtgcccaaatccatgattaggaaaatgatttggttcaggttgaggagcagtttcaggtcgttgtccagcaggtctactangaatttcaaggccaggaattggttttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="25037" stop="23875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24737" g_stop="24175" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E260333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24737" e_stop="24175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATACACATTACACAGATATAAACTTGTTACATTAAAGTAACAGAGTGCTCGCATCTATAAAATCACCAAAGTTAGTAGTAACTTCAAGGTGAGTGCAGAATTGACATATCCACATGCACAAAATCTGATAGCCAACATTAGCATCAGGGATAGACTGAATCCATTCTTTAGCCTAACAAATAAATTAGCACAAGAAAACCAACAAGTAAAAACATTAACTTGAGATTGCTATCTGCTTGTCCTTGAGCAGTGTCTTGAGCGTTACGAACATGTGGCCCGTGATATGCAGGAGTATATCCAAAATGGTGATTTGATGCGGTAGGATATGCTGTCGGACCAGGAAATCCATGAAACTGGAAGCTGAGCAATGAAGGGAGCAATCCACCAAAACCAGCAGACATAGTAAAATTACCAAATCTTGCAGTTGCTGTTGGAAACAATCCTCCCATGTGCCCAAATCCATGATTAGGAAAATGATTTGGTTCAGGTTGAGGAGCAGTTTCAGGTCGTTGTCCAGCAGGTCTACTAGGAATTTCAAGGCCAGGAATTGGTTTTGAT</genome_strand>
        <mrna_strand>AAAATATACACATTACACAGATATAAACTTGTTACATTAAAGTAACAGAGTGCTCGCATCTATAAAATCACCAAAGTTAGTAGTAACTTCAAGGTGAGTGCAGAATTGACATATCCACATGCACAAAATCTGATAGCCAACATTAGCATCAGGGATAGACTGAATCCATTCTTTAGCCTAACAAATAAATTAGCACAAGAAAACCAACAAGTAAAAACATTAACTTGAGATTGCTATCTGCTTGTCCTTGAGCAGTGTCTTGAGCGTTACGAACATGTGGCCCGTGATATGCAGGAGTATATCCAAAATGGTGATTTGATGCGGTAGGATATGCTGTCGGACCAGGAAATCCATGAAACTGGAAGCTGAGCAATGAAGGGAGCAATCCACCAAAACCAGCAGACATAGTAAAATTACCAAATCTTGCAGTTGCTGTTGGAAACAATCCTCCCATGTGCCCAAATCCATGATTAGGAAAATGATTTGGTTCAGGTTGAGGAGCAGTTTCAGGTCGTTGTCCAGCAGGTCTACTANGAATTTCAAGGCCAGGAATTGGTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372302" ref_strand="+" ref_description="SGN-E372302 [TUS-30-B19](-)">
      <seq>gtcatcaacaggtgtttatggagactctggtggtgcattggttgatgaagagtttccacctagctcgacgactgaattggccaaagcaaggatagctgcagaggaaggatggttacatctggcttgtgatggaagggtctctgcccaaatatttagattgggtggcatatatggtcctggtagaagtgctgttgacactattctcaagcaagagcctctgtctaaaggtcagaagatgagattctccaggcattatacctcacgtattcacgttgctgacatctgtcaggctcttaaggccagcatacagaggccatctcctgggcagatatacaatgtagttgatgacgatcctgctcctagagagcaggtatttaagtttgctaggaacttggttgaggagaaatggccaggccacctaatcttcaacaactctgctgaagaggtaaagtctctaatcccgcagggaggttcaaggggagagaagcgagtctccaataaacgcattaaaacggaactgggagtgaatctgctttaccctacctatgaatctggattgcggagcattattgaacgcatagaagttccatttggcgtaagttgattgctctatcatcagaccgggaatggaaggtttccaatgtatgtggtgtttaggatgaaaagattgagctattaggatgaagtaattttatcgacgtgatgtagctcagaatgctggctgatatgacaacttgttatcctttttattttttttcacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="39184" stop="37295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39042" g_stop="39032" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39031" i_stop="38877" i_length="155">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38876" g_stop="38837" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="51" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38836" i_stop="38755" i_length="82">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38754" g_stop="38620" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="186" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38619" i_stop="38479" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38478" g_stop="38341" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="324" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="38040" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38039" g_stop="37596" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="768" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E372302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39042" e_stop="39032"/>
          <exon e_start="38876" e_stop="38837"/>
          <exon e_start="38754" e_stop="38620"/>
          <exon e_start="38478" e_stop="38341"/>
          <exon e_start="38039" e_stop="37596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCAACAGGTATGTCTTTTTTAACTATTGCAGGAAGAAATTTTGCGTTTGTATTGTTAATCACATTGCTACATGGTAAAACTACTTCTTTGGACAGACTGTATTCACAAAGTCTGTTATTGACTACTGATCCTAAGAAATTTGTTTCCCTTTTGGATTATTAGGTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGAGTAAGTCTACGTTAATCAAGCACTCAATTTCTTTGGTGCATTCGAAGTAGTCATCCTAGATTTATATGTTACCGTATTTCAGGTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAGGTTGCTATGAGGACATGTTTACTCTAATTGGACATTGCAATTGTTTTTCTCCGGATATGCTGCATCCAGCAGTTTTAATCTAATGAAGCACTCTTTGATTTAGTTGCAATCTGGCTTACTTTTACTAATGTTTTATTGCAGTGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCATCTCCTGGGTACCCATTTTCAATAACACTACTCTTTGTTCATCCAATTAGATTGTCTTAAATGTACGATTTATGTTTCTTCCTTTACTACCAAGATAATAATAAACCATGCCTCTGAAGTTGGTAATACCTTGTCCGCATAAAACTGGATTAGAAGAAGCTTTAGCACACTTTTGTATTTGCTTCTGCTCAGGGGTTTCTATGTGCAATAACTTTTAGGTCATTTTGATGGGGGGTACTTTTCAGCTTTCTATTTAATTATCTTGTAAGTTTCATCTTAATCAGTTAATTGTCTGGTTTGGCATTTCAGGCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTACCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCACAGATAATA</genome_strand>
        <mrna_strand>GTCATCAACAG...........................................................................................................................................................GTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGA..................................................................................GTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAG.............................................................................................................................................TGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCATCTCCTGG.............................................................................................................................................................................................................................................................................................................GCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTACCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372303" ref_strand="+" ref_description="SGN-E372303 [TUS-30-B19]">
      <seq>ggctgccaaatcaaccggctgttattcatctccggcagggtcaaactgccggaatatattctattaaaacgccacagttttcatccaatattaaatgcagtgtaggtgaagaatccagcactaaaaatccggatttgaaaaatcgaatgttcattctggggatgggtttcgtaggaaaattcttggctgcagatttgaaaagcaatggatgggaagttacaggaacttgtaccagtactgcacggaagaagaaattagaggaaatggggttgcatgcgcacatatttgacgccaatgaaccacaacaggaagtcctcgatatcttgaaattccattcacatcttcttatctccatccctccagttttgggtgttggtgatccgatgcttcggcataaagaattgctaaaagaaagactaaaggatggtaacctccagtggcttggttacttgtcatcaacaggtgtttatggagactctggtggtgcattggttgatgaagagtttccacctagctcgacgactgaattggccaaagcaaggatagctgcagaggaaggatggttacatctggcttgtgatggaagggtctctgcccaaatatttagattgggtggcatatatggtcctggtagaagtgctgttgacactattctcaagcaagagcctctgtctaaaggtcagaagatgagattctccaggcattatacctcacgtattcacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41167" stop="38089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40867" g_stop="40657" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40563" g_stop="40471" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="304" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40470" i_stop="39666" i_length="805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39665" g_stop="39587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="383" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39586" i_stop="39111" i_length="476">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39110" g_stop="39032" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="462" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39031" i_stop="38877" i_length="155">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38876" g_stop="38837" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="502" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38836" i_stop="38755" i_length="82">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38754" g_stop="38620" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="637" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38619" i_stop="38479" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38478" g_stop="38389" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="727" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E372303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40867" e_stop="40657"/>
          <exon e_start="40563" e_stop="40471"/>
          <exon e_start="39665" e_stop="39587"/>
          <exon e_start="39110" e_stop="39032"/>
          <exon e_start="38876" e_stop="38837"/>
          <exon e_start="38754" e_stop="38620"/>
          <exon e_start="38478" e_stop="38389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATGGTGAATAAGACTTATCCTTGATCTCCTTTTCCTCTTTTTGTGTAGTTGAAGTTGTGAAAAGAAGCAAGCTGTTAACATTTGTGTATTGCGTAGGGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACAGTGAGTTTTCATGTCATCTCTCTTATTCATATAAATGTTCTTTGGTCAGAACTCAGAACATAACTCTACTGTTATTGGAAGCTTCGTCCTCAACTCTTTTAACATAACAAATTAAGTACGTCGTTGCTGCAAATTTTGTCTAAAGTTGAATATGGATCAATCCTTTCGGATGCAACTAGTCGCCTCTTAAAATAACACACTAGGATTTTGCTGTATATGACGTAACTGCTACTGGACATTAATCAATGGCTAAAATGGCCAGAAAATGATACGATAAAAAGACATAGTATAATGAAAACAACTAGAGAATAATTGAATTCTCAAAATCTAAAGGAATAGAGGCAAACCATGTTTTTATTTAACTAGGGAAGTGACTTCAAATGATAAATGCATAATGTGTAGACTTCGAATCGGTGGAGAATTAGAATGTGAAGCAAAGACTTTAATGGCAAGAACTCCTAAGCTGTTGTTGGTTTTCCCTTTTGTGTTTACTCCTTTTTCAAACAAAATATACAGTACACAATACTTTCATGAATGAAGTGAATGATAAATTTCTTTGTTAAGTAGCAATTAAGTCTCTTTGATTCAGTTTTTTCTCACACTGTTGTTGTAATAGTTACTTCATCCAAATAAGATCAAAGTTAGGTTGTGTTTCTTATATCCAGACTAATGTGTTCATTGATTTCTGATTTAGGGTGTAATGTAGGGTCACATATCTCAACCTCCATACTTGTAGGCGGTTTTATAGAAGAAACACTCTTTCTATCTCCCCCCTGTTCTGATAAGTGTTTATGCTCTTTTTCAGACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCGGTAAATTTACTCAGTATTATGCTGCTGTTATAGTAAGCAATATGACATAGGTCGTGCTAATTGTAGAGACCTTCCATGTTGACGTGTTTATTGATGATGTTCATACTAGATATTCCTAACGACTTTTTCTTGGTCACGATATTCAAATGAACTATGATAAAAAAGAATAGAAGTTAATTTTGTTTCTTCTTATCGTTTATCTTAATTTTATTGTGTTTCTTTAGGTGTGGAATTCTTCTTCTTAGCTACGTTTTGCTATTATGCTCAATAGTTAGCAATATCATTTATTTGAAGATTCTTTACTTTTGAATCTAAAAAATAAGGTAAACTCATGCACCGAAGCCATAAAACTTTCTATGTAACTGTAGAATCTGGAATGGAATGGAGCTATATGGTATCATGAAAAACTGTAGGAGAAGTTTTTAGTTTACCTTTCCACTAGCTTGAATATCTAGTAATAGTTGTGTGTACTGCAGATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAGGTATGTCTTTTTTAACTATTGCAGGAAGAAATTTTGCGTTTGTATTGTTAATCACATTGCTACATGGTAAAACTACTTCTTTGGACAGACTGTATTCACAAAGTCTGTTATTGACTACTGATCCTAAGAAATTTGTTTCCCTTTTGGATTATTAGGTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGAGTAAGTCTACGTTAATCAAGCACTCAATTTCTTTGGTGCATTCGAAGTAGTCATCCTAGATTTATATGTTACCGTATTTCAGGTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAGGTTGCTATGAGGACATGTTTACTCTAATTGGACATTGCAATTGTTTTTCTCCGGATATGCTGCATCCAGCAGTTTTAATCTAATGAAGCACTCTTTGATTTAGTTGCAATCTGGCTTACTTTTACTAATGTTTTATTGCAGTGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGC</genome_strand>
        <mrna_strand>GGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATG.............................................................................................GGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAG...........................................................................................................................................................GTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGA..................................................................................GTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAG.............................................................................................................................................TGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244396" ref_strand="+" ref_description="SGN-E244396 [cLEF-3-L11]">
      <seq>gatttgccggctgccaaatcaaccggctgttattcatctccggcagggtcaaactgccggaatatattctattaaaacgccacagttttcatccaatattaaatgcagtgtaggtgaagaatccagcactaaaaatccggatttgaaaaatcgaatgttcattctggggatgggtttcgtaggaaaattcttggctgcacatttgaaaagcaatggatgggaagttacaggaacttgtaccagtactgcacggaagaagaaattagaggaaatggggttgcatgcgcacatatttgacgccaatgaaccacaacaggaagtcctcgatatcttgaaattccattcacatcttcttatctacatccctccagttttgggtgttggagatccgatgcttcggcataaagaattgcttcaagaaggacttaaggatggtaacctccagtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41175" stop="38751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40875" g_stop="40657" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40563" g_stop="40471" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="312" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40470" i_stop="39666" i_length="805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39665" g_stop="39587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="391" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39586" i_stop="39111" i_length="476">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39110" g_stop="39051" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="451" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E244396" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40875" e_stop="40657"/>
          <exon e_start="40563" e_stop="40471"/>
          <exon e_start="39665" e_stop="39587"/>
          <exon e_start="39110" e_stop="39051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATGGTGAATAAGACTTATCCTTGATCTCCTTTTCCTCTTTTTGTGTAGTTGAAGTTGTGAAAAGAAGCAAGCTGTTAACATTTGTGTATTGCGTAGGGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACAGTGAGTTTTCATGTCATCTCTCTTATTCATATAAATGTTCTTTGGTCAGAACTCAGAACATAACTCTACTGTTATTGGAAGCTTCGTCCTCAACTCTTTTAACATAACAAATTAAGTACGTCGTTGCTGCAAATTTTGTCTAAAGTTGAATATGGATCAATCCTTTCGGATGCAACTAGTCGCCTCTTAAAATAACACACTAGGATTTTGCTGTATATGACGTAACTGCTACTGGACATTAATCAATGGCTAAAATGGCCAGAAAATGATACGATAAAAAGACATAGTATAATGAAAACAACTAGAGAATAATTGAATTCTCAAAATCTAAAGGAATAGAGGCAAACCATGTTTTTATTTAACTAGGGAAGTGACTTCAAATGATAAATGCATAATGTGTAGACTTCGAATCGGTGGAGAATTAGAATGTGAAGCAAAGACTTTAATGGCAAGAACTCCTAAGCTGTTGTTGGTTTTCCCTTTTGTGTTTACTCCTTTTTCAAACAAAATATACAGTACACAATACTTTCATGAATGAAGTGAATGATAAATTTCTTTGTTAAGTAGCAATTAAGTCTCTTTGATTCAGTTTTTTCTCACACTGTTGTTGTAATAGTTACTTCATCCAAATAAGATCAAAGTTAGGTTGTGTTTCTTATATCCAGACTAATGTGTTCATTGATTTCTGATTTAGGGTGTAATGTAGGGTCACATATCTCAACCTCCATACTTGTAGGCGGTTTTATAGAAGAAACACTCTTTCTATCTCCCCCCTGTTCTGATAAGTGTTTATGCTCTTTTTCAGACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCGGTAAATTTACTCAGTATTATGCTGCTGTTATAGTAAGCAATATGACATAGGTCGTGCTAATTGTAGAGACCTTCCATGTTGACGTGTTTATTGATGATGTTCATACTAGATATTCCTAACGACTTTTTCTTGGTCACGATATTCAAATGAACTATGATAAAAAAGAATAGAAGTTAATTTTGTTTCTTCTTATCGTTTATCTTAATTTTATTGTGTTTCTTTAGGTGTGGAATTCTTCTTCTTAGCTACGTTTTGCTATTATGCTCAATAGTTAGCAATATCATTTATTTGAAGATTCTTTACTTTTGAATCTAAAAAATAAGGTAAACTCATGCACCGAAGCCATAAAACTTTCTATGTAACTGTAGAATCTGGAATGGAATGGAGCTATATGGTATCATGAAAAACTGTAGGAGAAGTTTTTAGTTTACCTTTCCACTAGCTTGAATATCTAGTAATAGTTGTGTGTACTGCAGATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTT</genome_strand>
        <mrna_strand>GATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCACATTTGAAAAGCAATGGATG.............................................................................................GGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTACATCCCTCCAGTTTTGGGTGTTGGAGATCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCGGCATAAAGAATTGCTTCAAGAAGGACTTAAGGATGGTAACCTCCAGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282665" ref_strand="+" ref_description="SGN-E282665 [cLER-15-M18]">
      <seq>gccaaatcaaccggctgttattcatctccggcagggtcaaactgccggaatatattctattaaaacgccacaggtttcatccaatattaaatgcagcgtacgtgaagaatccagcactaaaaatccggatttgaaaaatcgaatgttcattctggggatgggtatcgtaggaaaattcttggctgcagatttgaaaagcaatggatgggaaattacaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41163" stop="40348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40863" g_stop="40657" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40563" g_stop="40550" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="221" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E282665" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40863" e_stop="40657"/>
          <exon e_start="40563" e_stop="40550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATGGTGAATAAGACTTATCCTTGATCTCCTTTTCCTCTTTTTGTGTAGTTGAAGTTGTGAAAAGAAGCAAGCTGTTAACATTTGTGTATTGCGTAGGGAAGTTACAGGAA</genome_strand>
        <mrna_strand>GCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGGTTTCATCCAATATTAAATGCAGCGTACGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTATCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATG.............................................................................................GGAAATTACAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271700" ref_strand="+" ref_description="SGN-E271700 [cLEM-23-N17]">
      <seq>gcttatataacaaaacaacagtctcttgaactaatgtttcttgattctaatgaactgaaaatgaattattctcatctcatctttgtttttaccatcattcttgcttattcctctgtttcaattcttgcacaacagccttattttggaactggaacaaatgactgcagcagccaagatacctccacttctgcttttgggtatttatgcaatggcgttaaccgtacttgccaatcttatttgaccttcagatctcaaccccctttcaatactgtgtcctcaatctcttctttactcggtgctaatccttcacagctctctcagctcaattctgtttctcaaaatgctacctttaacaccaatcaaatggttcttgttcctgtcacttgttcttgttcaggtcagttttatcaatcaaatgcatcttatgttatcagaagggatgatagtttcttgaatattgcaatgaataccttacaaggattgtcaacttgccaagctatcaacgcggagaacagtgaacaagctaacaatcttgttgttggttcaagaattaatgttcctctgcgatgtgcttgtcctacacaaaaccaaactaataatggtacaaattatctgcttactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41812" stop="43034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42112" g_stop="42734" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E271700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42112" e_stop="42734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTA</genome_strand>
        <mrna_strand>GCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307830" ref_strand="+" ref_description="SGN-E307830 [cLEY-20-I10]">
      <seq>tgaaaatgaattattctcatctcatctttgtttttaccatcattcttgcttattcctctgtttcaattcttgcacaacagccttattttggaactggaacaaatgactgcagcagccaagatacctccacttctgcttttgggtatttatgcaatggcgttaaccgtacttgccaatcttatttgaccttcagatctcaaccccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41867" stop="42673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42167" g_stop="42373" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E307830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42167" e_stop="42373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTT</genome_strand>
        <mrna_strand>TGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261626" ref_strand="+" ref_description="SGN-E261626 [cLEG-61-A13]">
      <seq>gattgtcaacttgccaagctatcaacgcggagaacagtgaacaagctaacaatcttgttgttggttcaagaattaatgttcctctgcgatgtgcttgtcctacacaaaaccaaactaataatggtacaaattatctgcttacttatttgattgcttctggggaatttgtttcctttattagtgataaatttggggtggattttagggcaactcttgctgctaatagtataccagaagatgctcctactgtctttccaaatactactctattagttcctttatcgaccccacctttgagttcccaagttgctggaccatctccaccaccgcctcctgcgacaacaccaacaccacctgctgtccctgtatcggagagcagctcgaacaaaacttggatatatgttgtcgctggtgttgttggaggacttgttgctttgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="42290" stop="43330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42590" g_stop="43030" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E261626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42590" e_stop="43030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTA</genome_strand>
        <mrna_strand>GATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260581" ref_strand="+" ref_description="SGN-E260581 [cLEG-54-D10]">
      <seq>ttgattgcttctggggaatttgtttcctttattagtgataaatttggggtggattttagggcaactcttgctgctaatagtataccagaagatgctcctactgtctttccaaatactactctattagttcctttatcgaccccacctttgagttcccaagttgctggaccatctccaccaccgcctcctgcgacaacaccaacaccacctgctgtccctgtatcggagagcagctcgaacaaaacttggatatatgttgtcgctggtgttgttggaggacttgttgctttgtgtattctgggggtggttgttttctttttgtttttcaggaaaaaggaaaagaaagctgatccacagtttgtttctgaaagctttgaagctgttgagaaaccgtcgaataagaaagttgaagaagaatcagaggagtttttggaaagtttatccagcatagctcaatctgttaaggtttacaagtttgaagaggttaaagcagccacagaaaatttcagtcctacatgtttgattaagggatctgtttatcggggcacgataaatggggattttgctgctataaagaaaatgagtggtgatgtatcaaaggaaattaatttgttgagcaaaatcaatcattttaatcttattagtctatcgggaatttgttttcatgatggtcactggtatcttgtatatgaatatgctgccaatggaccattaagtgattggatatgtcaccataatggtgagcagaagtcactaagttgggcacaaagagtacaaatttcttttgatgtggctacaggacttaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="42436" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42736" g_stop="43546" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E260581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42736" e_stop="43546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATC</genome_strand>
        <mrna_strand>TTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697171" ref_strand="+" ref_description="SGN-E697171 [FA01AB07]">
      <seq>attctgggggtggttgttttctttttgtttttcaggaaaaaggaaaagaaagctgatccacagtttgtttctgaaagctttgaagctgttgagaaaccgtcgaataagaaagttgaagaagaatcagaggagtttttggaaagtttatccagcatagctcaatctgttaaggtttacaagtttgaagaggttaaagcagccacagaaaatttcagtcctacatgtttgattaagggatctgtttatcggggcacgataaatggggattttgctgctataaagaaaatgagtggtgatgtatcaaaggaaattaatttgttgagcaaaatcaatcattttaatcttattagtctatcgggaatttgttttcatgatggtcactggtatcttgtatatgaatatgctgccaatggaccattaagtgattggatatgtcaccataatggtgagcagaagtcactaagttgggcacanagagtacaaatttcttttgatgtggctacaggacttaactatctccatagctacacatccccatctcatgttcacaaggatttaaacggtgataatatacttcttgatggtgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="42730" stop="43920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43030" g_stop="43620" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E697171" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43030" e_stop="43620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTA</genome_strand>
        <mrna_strand>ATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACANAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCATCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240741" ref_strand="+" ref_description="SGN-E240741 [cLED-24-K17]">
      <seq>gggtggttgttttctttttgtttttcaggaaaaaggaaaagaaagctgatccacagtttgtttctgaaagctttgaagctgttgagaaaccgtcgaataagaaagttgaagaagaatcagaggagtttttggaaagtttatccagcatagctcaatctgttaaggtttacaagtttgaagaggttaaagcagccacagaaaatttcagtcctacatgtttgattaagggatctgtttatcggggcacgataaatggggattttgctgctataaagaaaatgagtggtgatgtatcaaaggaaattaatttgttgagcaaaatcaatcattttaatcttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="42737" stop="43678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43037" g_stop="43378" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E240741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43037" e_stop="43378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTA</genome_strand>
        <mrna_strand>GGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212907" ref_strand="+" ref_description="SGN-E212907 [cLEC-73-P21]">
      <seq>agccacagaaaatttcagtcctacatgtttgattaagggatctgtttatcggggcacgataaatggggattttgctgctataaagaaaatgagtggtgatgtatcaaaggaaattaatttgttgagcaaaatcaatcattttaatcttattagtctatcgggaatttgttttcatgatggtcactggtatcttgtatatgaatatgctgccaatggaccattaagtgattggatatgtcaccataatggtgagcagaagtcactaagttgggcacaaagagtacaaatttcttttgatgtggctacaggacttaactatctccatagctacacatccccacctcatgttcacaaggatttaaacggtgataatatacttcttgatggtgatttaagagccaagattgctaactttggtctagcaaggtcagcagatggacaagaaggtgagtttgcattgacaaggcacatagttgggacccaaggctacatggcacctgagtatttggagaatgggctagtctcaccgaagctggatgtctatgcattgggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtgggacttgcttttgccatggtcagattgatcgataactgcctaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="42927" stop="44288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43227" g_stop="43988" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E212907" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43227" e_stop="43988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAA</genome_strand>
        <mrna_strand>AGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGGACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389867" ref_strand="+" ref_description="SGN-E389867 [TUS-4-J5]">
      <seq>ccgggctgcagggggtgctctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttctacaccaacttggctgaattgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacttcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagagctattgcaccatttatcctacataaaaatcagtttaacatttcagtcnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43470" stop="44569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43764" g_stop="44271" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="558"/>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E389867" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43764" e_stop="44271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</genome_strand>
        <mrna_strand>CCGGGCTGCAGGGGGTGCTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTC-TACACCAACTTGGCTGAATTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACTTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550027" ref_strand="+" ref_description="SGN-E550027 [TUS-5-J5]">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagagctattgcaccatttatcctacataaaaatcagtttaacatttcagtcgnnnaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44266" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="512"/>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCA</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550359" ref_strand="+" ref_description="SGN-E550359 [TUS-5-L4](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttcttagttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggaatgcaccattatcctcataaaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44255" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550359" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTAGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAG-GAATGCACCA-TTATCCT-CAT-AAAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550343" ref_strand="+" ref_description="SGN-E550343 [TUS-5-J3](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggatattgcaccattatcctacataaaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44255" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550343" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGA-GCTATTGCACCATTTATCCTACATAAAAATCAGT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGGATATTGCACCA-TTATCCTACAT-AAAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550345" ref_strand="+" ref_description="SGN-E550345 [TUS-5-J5](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagaggtatgcaccattttcctcataaaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44255" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550345" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGGTA-TGCACCATTT-TCCT-CAT-AAAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550353" ref_strand="+" ref_description="SGN-E550353 [TUS-5-K6](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgggtatattgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggaatgcaccattatcctcataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550353" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGGGTATATTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAG-GAATGCACCA-TTATCCT-CAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550337" ref_strand="+" ref_description="SGN-E550337 [TUS-5-I3](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagagatatgcaccattatcctcataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550337" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGATA-TGCACCA-TTATCCT-CAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550358" ref_strand="+" ref_description="SGN-E550358 [TUS-5-L3](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggaatgcaccatttatcctcataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550358" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAG-GAATGCACCATTTATCCT-CAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550465" ref_strand="+" ref_description="SGN-E550465 [TUS-5-I6](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggtatgcaccattatcctcataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550465" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGGTA-TGCACCA-TTATCCT-CAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550338" ref_strand="+" ref_description="SGN-E550338 [TUS-5-I4](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagagatatgcaccatttatcctcataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGATA-TGCACCATTTATCCT-CAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550342" ref_strand="+" ref_description="SGN-E550342 [TUS-5-J1](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagagctattgcaccattatcctacataaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44254" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550342" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAG</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGCTATTGCACCA-TTATCCTACAT-AAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389610" ref_strand="+" ref_description="SGN-E389610 [TUS-4-J5](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagagctagacaccattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44240" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E389610" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCC</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTA-GACACCA-TTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550360" ref_strand="+" ref_description="SGN-E550360 [TUS-5-L7](-)">
      <seq>gggagttctgttgctggagattctcaccgggataagaagtttcccgctttatatgaaggttcaaacacaaacttggctgagttgttgatctcggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgaccgttctatgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcataatgaaagatccctcacatcgccataatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttcttggttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaatggatactaccttgtttatgaattggaagaagaattgcaccattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44239" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550360" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGA-AAGAAGTTT-CCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATC</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGATAAGAAGTTTCCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCTCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCGTTCTATGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCATAATGAAAGATCCCTCACATCGCCATAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTGGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATGGATACTACCTTGTTTATGAA-TTGGAAGAAGAATTGCACCA-TTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550351" ref_strand="+" ref_description="SGN-E550351 [TUS-5-K3](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctatgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcgtaatgaaagatccctcacatcgccgtaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttcttagttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagaggaatgcaccatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44239" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550351" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATC</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTATGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCGTAATGAAAGATCCCTCACATCGCCGTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTAGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAG-GAATGCACCATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550339" ref_strand="+" ref_description="SGN-E550339 [TUS-5-I7](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgggtattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagagcaattgcaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44235" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550339" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGGGTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGCAATTGCACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550346" ref_strand="+" ref_description="SGN-E550346 [TUS-5-J6](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaatggttattaccttgtttatgaattggaagaggtatgcaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44235" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550346" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATGGTTATTACCTTGTTTATGAA-TTGGAAGAGGTA-TGCACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550347" ref_strand="+" ref_description="SGN-E550347 [TUS-5-J7](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctatgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggtatgcaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44235" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550347" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTATGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGGTA-TGCACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550466" ref_strand="+" ref_description="SGN-E550466 [TUS-5-K4](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcataatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgttttcgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagaggaatgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44234" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550466" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCAT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCATAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTCGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAG-GAATGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550052" ref_strand="+" ref_description="SGN-E550052 [TUS-5-I2](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggaatgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44234" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550052" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCAT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAG-GAATGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550344" ref_strand="+" ref_description="SGN-E550344 [TUS-5-J4](-)">
      <seq>gggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagagatatgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="44534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43776" g_stop="44234" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E550344" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43776" e_stop="44234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCAT</genome_strand>
        <mrna_strand>GGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGATA-TGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377798" ref_strand="+" ref_description="SGN-E377798 [TUS-21-P13]">
      <seq>ggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaatttggaagagctattgcaccatttatcctacataaaaatcagtttaacatttcagtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43477" stop="44571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43777" g_stop="44271" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="547"/>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E377798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43777" e_stop="44271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</genome_strand>
        <mrna_strand>GGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232768" ref_strand="+" ref_description="SGN-E232768 [cLED-8-K22]">
      <seq>ggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattggttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="43477" stop="44427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43777" g_stop="44127" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E232768" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43777" e_stop="44127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCT</genome_strand>
        <mrna_strand>GGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGGTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366308" ref_strand="-" ref_description="SGN-E366308 [cLPT-1-A21](-)">
      <seq>ttttttttttttgagcatcaatatgtttggatttcctttatatgaataagtatacaagttgaagcagacacaagtgtattaaacgtatctgcatcttattgctgcatttactctttatcttttaattattctgtaatgattataattgtatgtgctatgtggtcctacaaaactagtatagaaggtttgtttacagcatccgcgtggaagtggaaacactcggaatgactgaaaattttaacacgggtaggttcctgtaagccggatgtgatcaagtgtcgtcttaaggccatacttgagcactgccttgttaccttctctgaatccatccccataagctgctgatgtatctgattcaatttggtgcttaaaaaaatcacccagtttcttctcaaagtcggagcgtttccctttctttgatgaagtagatggtgatgaagatgatgatgaggatgcagaggtagatgcagaagttgaagtactgccagaaccagctataatttctgagtccaaccacatgtgagctaaaacttggcagataccttcttccacttctggacttaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="48042" stop="61475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59989" g_stop="60024" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.611"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60025" i_stop="60452" i_length="428">
            <donor d_prob="0.858" d_score="0.00"/>
            <acceptor a_prob="0.852" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60453" g_stop="60469" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="48" r_length="16" r_score="0.588"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60470" i_stop="60660" i_length="191">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60661" g_stop="61175" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="568" r_length="520" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E366308" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366308" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59989" e_stop="60024"/>
          <exon e_start="60453" e_stop="60469"/>
          <exon e_start="60661" e_stop="61175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTGTTGTGTGCCATACAATAACTATAATGATGCATGTCACTCTCGTGGCATAACCTTCCTAATCTCATTTTAGCAAGTCCACCGACTTGACTTCCAAAAATCATGTTGTTAGGAAAGAGCTATTCTTTCTCATGCATGTCCCTGGTGTGTGCTTGCATATACCCATACTTAGTACAAGTGTGTACTAATTCCATACAAACATCTACTTTTAGGTGCAGGCACAGGTGTACGGTAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAAGGTTAGATGGTTGATGATGAACGATTACGAAATGTTAAGAATGTTCAGCAAGTATGATTAAAGAATCAAAAATTCCAAATTTTCCGCTAAAATTAATCTATGTAAAGTAAGAATGACGTAAGTAGGCTTGTCTGCGACCTCTGAGAGGTCAACGACGCCGGTCTCGTCTGGGGTCTAGATTCCGGTCGTGACAGTATACAAGTTGAAGCAGACACAAGGGTATTAAACG---CAG-ATCTTATTGCTGCATTTACTCTTTATCTTTTAATTATTGTGTAATGATTATAATTGTATGTGCTATGTGGTCCTACAAAACTAGTATAGAAGGTTTG-TTACAACATCCGCGTGGAAGTGGAAACACTCGGAATGACTGAAAATTTTAACACGGGTAGGTTCCTGTAAGCCGGATGTGATCAAGTGTCGTCTTAAGGCCATACTTGAGCACTGCCTTGTTACCTTCTCTGAATCCATCCCCATAAGCTGCTGATGTATCTGATTCAATTTGGTGCTTAAAAAAATCACCCAGTTTCTTCTCAAAGTCGGAGCGCTTCCCTTTCTTTGATGAAGTAGATGGTGATGAAGATGATGATGAGGATGCAGAGGTAGATGCAGAAGTTGAAGTACTGCCAGAACCAGCTATAATTTCCGAGTCCAACCACATGTGAGCTAAAACTTGGCAGATACCTTCTTCCACTTCTGGACTTAAACTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGAG-CAT-CAATA--TGTTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTT-TATATGAATA...............................................................................................................................................................................................AGTATACAAGTTGAAGCAGACACAAGTGTATTAAACGTATCTGCATCTTATTGCTGCATTTACTCTTTATCTTTTAATTATTCTGTAATGATTATAATTGTATGTGCTATGTGGTCCTACAAAACTAGTATAGAAGGTTTGTTTACAGCATCCGCGTGGAAGTGGAAACACTCGGAATGACTGAAAATTTTAACACGGGTAGGTTCCTGTAAGCCGGATGTGATCAAGTGTCGTCTTAAGGCCATACTTGAGCACTGCCTTGTTACCTTCTCTGAATCCATCCCCATAAGCTGCTGATGTATCTGATTCAATTTGGTGCTTAAAAAAATCACCCAGTTTCTTCTCAAAGTCGGAGCGTTTCCCTTTCTTTGATGAAGTAGATGGTGATGAAGATGATGATGAGGATGCAGAGGTAGATGCAGAAGTTGAAGTACTGCCAGAACCAGCTATAATTTCTGAGTCCAACCACATGTGAGCTAAAACTTGGCAGATACCTTCTTCCACTTCTGGACTTAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547870" ref_strand="+" ref_description="SGN-E547870 [TUS-71-P15](-)">
      <seq>gaacagaccattagcagtatttcaaggagaccacggataggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaatcttgtatggtcttcctaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttacggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcagaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaaacgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaacctacccgtgttaaaattttcagtcattccgagtgtttccacttccacgcggatgctgtaaacaaaccttctatactagttttgtaggaccacatagcacatacaattataatcattacagaataattaaaagataaagagtaaatgcagcaataagatgcagatacgtttaatacacttgtgtctgcttcaacttgtatacttattcatataaaggaaatccaaacactattgatgcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61965" stop="48042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61665" g_stop="61648" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61647" i_stop="61560" i_length="88">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61559" g_stop="61444" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="134" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61443" i_stop="61332" i_length="112">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61331" g_stop="61273" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61182" g_stop="60661" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="720" r_length="527" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60660" i_stop="60422" i_length="239">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60421" g_stop="60369" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="770" r_length="50" r_score="0.585"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E547870" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61665" e_stop="61648"/>
          <exon e_start="61559" e_stop="61444"/>
          <exon e_start="61331" e_stop="61273"/>
          <exon e_start="61182" e_stop="60661"/>
          <exon e_start="60421" e_stop="60369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGACCATTAGCAGTGTATGAGTCTTCCCTTTTTCTGCACTTTTCTTAAATGTCCATATACTGTTCAAAATGAAATATGTCTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGT-AACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGAT-C---TGCGTTTAATACCCTTGTGTCTGCTTCAACTTGTATACTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTACTTACGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGGAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACCTTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAATATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTCTGAACCAAAACAGGAAAGAAA</genome_strand>
        <mrna_strand>GAACAGACCATTAGCAGT........................................................................................ATTTCAAGGAGACCACGGATAGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATCTTGTATGGTCTTCCTAG................................................................................................................GTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTACGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCAGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAACGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGCTGTAAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACAGAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATGCAGATACGTTTAATACACTTGTGTCTGCTTCAACTTGTATACT...............................................................................................................................................................................................................................................TAT-TCATATAAAGGAAATCCAA-ACACTAT-TGATGCACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337068" ref_strand="+" ref_description="SGN-E337068 [cTOE-7-K19]">
      <seq>ttttttcttttattaaacgcagatcttattgctgcatttactctttatcttttaattattgtgtaatgattataattgtatgtgctatgtggtcctacaaaactattctacaaggtttgtttcaacatccgcgtggaagtggaaacactctgaatgactgaaaattttaacacgggtaggttcctgtaagccggatgtgatcaagtgtcgtcttaaggccatacttgagcactgccttgttaccttctgtgaatccatccccataagctgctgatgtatctgattcaatctggtgcttaaaaaaataacccagtttttttttatagtcggagcgcttccctttctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="60389" stop="61328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60689" g_stop="61028" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="350" r_length="340" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E337068" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60689" e_stop="61028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAACGCAGATCTTATTGCTGCATTTACTCTTTATCTTTTAATTATTGTGTAATGATTATAATTGTATGTGCTATGTGGTCCTACAAAACTAGTATAGAAGGTTTGTTACAACATCCGCGTGGAAGTGGAAACACTCGGAATGACTGAAAATTTTAACACGGGTAGGTTCCTGTAAGCCGGATGTGATCAAGTGTCGTCTTAAGGCCATACTTGAGCACTGCCTTGTTACCTTCTCTGAATCCATCCCCATAAGCTGCTGATGTATCTGATTCAATTTGGTGCTTAAAAAAATCACCCAGTTTCTTCTCAAAGTCGGAGCGCTTCCCTTTCTTTGAT</genome_strand>
        <mrna_strand>TATTAAACGCAGATCTTATTGCTGCATTTACTCTTTATCTTTTAATTATTGTGTAATGATTATAATTGTATGTGCTATGTGGTCCTACAAAACTATTCTACAAGGTTTGTTTCAACATCCGCGTGGAAGTGGAAACACTCTGAATGACTGAAAATTTTAACACGGGTAGGTTCCTGTAAGCCGGATGTGATCAAGTGTCGTCTTAAGGCCATACTTGAGCACTGCCTTGTTACCTTCTGTGAATCCATCCCCATAAGCTGCTGATGTATCTGATTCAATCTGGTGCTTAAAAAAATAACCCAGTTTTTTTTTATAGTCGGAGCGCTTCCCTTTCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216622" ref_strand="+" ref_description="SGN-E216622 [cLEL-1-E9](-)">
      <seq>agtacttcaacttctgcatctacctgtgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaaaaaactgggtgatttttttaagcccccaattgaatcagatacatcagcagcttatggggatggattcaaagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaacctacccgtgttaaaattttcagtcattccgagtgtttccacttccacgcggatgttgtaacaaaccttctatactagttttgtaggaccccatagcacatacaattataatcatttcccaataattaaaagataaagagtaaatgcagcaataccctctgcgtttaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61390" stop="60405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61090" g_stop="60692" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="441"/>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E216622" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61090" e_stop="60692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGTAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATCTGCGTTTA</genome_strand>
        <mrna_strand>AGTACTTCAACTTCTGCATCTACCTGTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAAAAACTGGGTGATTTTTTTAAGCCCCCAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAAAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGTAACAAACCTTCTATACTAGTTTTGTAGGACCCCATAGCACATACAATTATAATCATTTCCCAATAATTAAAAGATAAAGAGTAAATGCAGCAATACCCTCTGCGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688487" ref_strand="+" ref_description="SGN-E688487 [t3_tus_50_l02]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaacctacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60851" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="642" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E688487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCG</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550797" ref_strand="+" ref_description="SGN-E550797 [TUS-50-L2]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60855" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="638" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E550797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550808" ref_strand="+" ref_description="SGN-E550808 [TUS-50-M1]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60855" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="638" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E550808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688507" ref_strand="+" ref_description="SGN-E688507 [t3_tus_50_m01]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60855" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="638" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E688507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550770" ref_strand="+" ref_description="SGN-E550770 [TUS-50-J4]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60867" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="626" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E550770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCT</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688453" ref_strand="+" ref_description="SGN-E688453 [t3_tus_50_j04]">
      <seq>cttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61882" stop="60567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61582" g_stop="61273" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60867" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="626" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E688453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61582" e_stop="61273"/>
          <exon e_start="61182" e_stop="60867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCT</genome_strand>
        <mrna_strand>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550784" ref_strand="+" ref_description="SGN-E550784 [TUS-50-K4]">
      <seq>accacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61848" stop="60568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61548" g_stop="61273" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60868" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="591" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E550784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61548" e_stop="61273"/>
          <exon e_start="61182" e_stop="60868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGC</genome_strand>
        <mrna_strand>ACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688469" ref_strand="+" ref_description="SGN-E688469 [t3_tus_50_k04]">
      <seq>accacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61848" stop="60594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61548" g_stop="61273" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60894" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="565" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E688469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61548" e_stop="61273"/>
          <exon e_start="61182" e_stop="60894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCT</genome_strand>
        <mrna_strand>ACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707111" ref_strand="+" ref_description="SGN-E707111 [FA32AD05]">
      <seq>gaggcctttgcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagagctttattccaacaaatccggctggtctaattgaatatagggctcatcctttctggcttcagaagtattgcccatcacatgaaactgatgggacgcctcgttgttgcagttgtgagagaatggagcccgtagatgccagatatctgatacttgaagatggtaggaagctgtgtctagagtgcttggactcttcaataatggacactcatgaatgtcaacccctttatcttgagatacaagaattttatgaaggtttaaatatgaaagtagagcagcaaattcctttgcttctagttgaaagacaagcattaaatgaagcaatggaaggagaaaagaacggtcatcatcacatgcctgagactcgaggactctgcctgtccgaggaacagaccattagcagtatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="62993" stop="60727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62699" g_stop="62635" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="148" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62317" g_stop="62198" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="268" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62197" i_stop="62029" i_length="169">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62028" g_stop="61816" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="481" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61815" i_stop="61711" i_length="105">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61710" g_stop="61648" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="544" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61647" i_stop="61560" i_length="88">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61559" g_stop="61444" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="660" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61443" i_stop="61332" i_length="112">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61331" g_stop="61273" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="719" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61182" g_stop="61027" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="875" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E707111" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62699" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
          <exon e_start="62317" e_stop="62198"/>
          <exon e_start="62028" e_stop="61816"/>
          <exon e_start="61710" e_stop="61648"/>
          <exon e_start="61559" e_stop="61444"/>
          <exon e_start="61331" e_stop="61273"/>
          <exon e_start="61182" e_stop="61027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTTGTAAGTGTTGCATTCATTCTTGTTTGTGGTATTGCACCATGAGCTTTACTGCATCCAACAGCTTCATTCTGGTAAAATATGACTAACCATATTTTTTGTATTTCTCCTCGACTTCTATGTGCTTAGATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAGGTTAGCTGCTGCCACTAACTATTGTAACATTTCTTTAAAGTGCATATATGTCTTTAAAGATTAGCAGAACAAATAGGAATACTATAAAACCTGAATATATGTTTAAACCTGAGACATTCTTTTTTCTCTTGTTCTTGTTGAGTAATGTTAAGATTTCTTGTTTTTGTAGCCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAACGTAAGAGTTCTGTTCAGAATTATCCATTTCTAAAGACGCTATACAATCACAGTCTGAGAAAGCTGTTACCTAACATCCAACTTCCATTTTTTTTCGTCTTGATAGGGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGTGTATGAGTCTTCCCTTTTTCTGCACTTTTCTTAAATGTCCATATACTGTTCAAAATGAAATATGTCTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCAT</genome_strand>
        <mrna_strand>GAGGCCTTT-GCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT..............................................................................................................................ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAG.........................................................................................................................................................................CCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAAC.........................................................................................................GGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGT........................................................................................ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAG................................................................................................................GTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208607" ref_strand="+" ref_description="SGN-E208607 [cLEC-39-C17]">
      <seq>ttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61881" stop="60973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61581" g_stop="61273" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E208607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61581" e_stop="61273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG</genome_strand>
        <mrna_strand>TTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725589" ref_strand="+" ref_description="SGN-E725589 [LA04AF04]">
      <seq>gcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatggaagatatttaagttgcatgggagctgtttggcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagagctttattccaacaaatccggctggtctaattgaatatagggctcatcctttctggcttcagaagtattgcccatcacatgaaactgatgggacgcctcgttgctgcagttgtgagagaatggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="63848" stop="61898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63548" g_stop="63515" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="185" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="306" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="390" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62317" g_stop="62198" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="510" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E725589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63548" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
          <exon e_start="62317" e_stop="62198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTTGTAAGTGTTGCATTCATTCTTGTTTGTGGTATTGCACCATGAGCTTTACTGCATCCAACAGCTTCATTCTGGTAAAATATGACTAACCATATTTTTTGTATTTCTCCTCGACTTCTATGTGCTTAGATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAG</genome_strand>
        <mrna_strand>GCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT..............................................................................................................................ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGCTGCAGTTGTGAGAGAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735857" ref_strand="+" ref_description="SGN-E735857 [LC03BF05]">
      <seq>gattcatatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctccggtggacaataccatagtgggtatgagggtgcgcaatatcatgggggctacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtatcaggacagtactacttgggacggaccaactacatcagtggatgaatcgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatggaagatatttaagttgcatgggagctgtttggcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagagctttattccaacaaatccggctggtctaattgaatatagggctcatcctttctggcttcagaagtattgcccatcacatgaaactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64351" stop="61932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64051" g_stop="63786" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="357" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="508" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="629" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="713" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62317" g_stop="62232" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="799" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E735857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64051" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
          <exon e_start="62317" e_stop="62232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTTGTAAGTGTTGCATTCATTCTTGTTTGTGGTATTGCACCATGAGCTTTACTGCATCCAACAGCTTCATTCTGGTAAAATATGACTAACCATATTTTTTGTATTTCTCCTCGACTTCTATGTGCTTAGATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGG</genome_strand>
        <mrna_strand>GATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT..............................................................................................................................ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735742" ref_strand="+" ref_description="SGN-E735742 [LC02DD04]">
      <seq>cggtattcatatagccaacttcaacttgtttgggattgaggcgtagttgttgtactccacggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacatgatctccggtggacaataccatattgggtatgagggcgcgcaagtatcatgggggctaccatggaaggcaatatcattcggggcatgaatgagaacaatatcatggagggtatcaggacagtactagcttgggacggacactactacttcagtggatgatatcgtgcagattttgataaagaaaaaattgatcgtgccattgcactttctctagcagaagaggatcataaggggaaaaaactaattgatagtgaaccccatttggaggaagacgaggctctcgccaatgcccttcatgaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatacggtctgtgccggttgcaatgctgaaattggacgtggaacatatttaagttgcatgggagctgtttggcatccataatgtttccgctgccatggttgcaatcaaccgatttccgactatgagttttcaatgtcatatagccgtctctaccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagatctttattccaacaaatccagctggtctatttgaatatagggctcatcctttctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64352" stop="61966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64054" g_stop="63786" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="0.88"/>
            <acceptor a_prob="0.950" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="365" r_length="93" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="516" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="637" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="721" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126">
            <donor d_prob="0.775" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62317" g_stop="62266" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="773" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E735742" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64054" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
          <exon e_start="62317" e_stop="62266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAA-TATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTA-CTTGGGACGGAC-CAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGA-ATCGT-CAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTTGTAAGTGTTGCATTCATTCTTGTTTGTGGTATTGCACCATGAGCTTTACTGCATCCAACAGCTTCATTCTGGTAAAATATGACTAACCATATTTTTTGTATTTCTCCTCGACTTCTATGTGCTTAGATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGC</genome_strand>
        <mrna_strand>CGGTATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACTCCACGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACATGATCTCCGGTGGACAATACCATATTGGGTATGAGGGCGCGCAAGTATCATGGGGGCTACCATGGAAGGCAATATCATTCGGGGCATGAATGAGAACAATATCATGGAGGGTATCAGGACAGTACTAGCTTGGGACGGACACTACTACTTCAGTG....................................................................................................................................................................................GATGATATCGTGCAGATTTTGATAAAGAAAAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCATAAGGGGAAAAAACTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAATGCCCTTCATGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAC...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACGTGGAACATATTTAAGTTGCATGGGAGCTGTTTGGCATCCATAATGTTTCCGCTGCCATGGTTGCAATCAACCGATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCATATAGCCGTCTCTACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGATCTTT..............................................................................................................................ATTCCAACAAATCCAGCTGGTCTATTTGAATATAGGGCTCATCCTTTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547871" ref_strand="+" ref_description="SGN-E547871 [TUS-71-P15]">
      <seq>ttcatttggaagtgtttattgcttaccagtttcggattcacatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctctggtggacaataccatggtgggtatgagggtgcgcaatatcatgggggttacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtataaggacagtactacttgggacggaccaactacatcagtggatgaattgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaagggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcttctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatggaagatatttaagttgcatgggagctgtttggcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagagcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64381" stop="62144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64074" g_stop="63786" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="300" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="391" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="542" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="663" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="747" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E547871" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64074" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT</genome_strand>
        <mrna_strand>GTGTTTATTGCTTACCAGTTTCGGATTCACATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCTGGTGGACAATACCATGGTGGGTATGAGGGTGCGCAATATCATGGGGGTTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATAAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATTGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAAGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCTTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201819" ref_strand="+" ref_description="SGN-E201819 [cLEC-11-F12]">
      <seq>atcattcggggcatgaaggagaacaatatcatggagggtatcaggacagtactacttgggacggaccaactacatcagtggatgaatcgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatggaagatatttaagttgcatgggagctgtttggcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64165" stop="62158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63865" g_stop="63786" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="171" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="322" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="443" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62527" g_stop="62458" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="513" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E201819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63865" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATG</genome_strand>
        <mrna_strand>ATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208073" ref_strand="+" ref_description="SGN-E208073 [cLEC-34-F19]">
      <seq>ttattgcttaccagttttggattcatatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctccggtggacaataccatagtgggtatgagggtgcgcaatatcatgggggctacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtatcaggacagtactacttgggacggaccaactacatcagtggatgaatcgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64370" stop="62421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64070" g_stop="63786" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="376" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="527" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62721" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="562" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E208073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64070" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATG</genome_strand>
        <mrna_strand>TTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205596" ref_strand="+" ref_description="SGN-E205596 [cLEC-21-K22]">
      <seq>ttattgcttaccagttttggattcatataggcaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctccggtggacaataccatagtgggtatgagggtgcgcaatatcatgggggctacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtatcaggacagtactacttgggacggaccaactacatcagtggatgaatcgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtttncaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64370" stop="62422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64070" g_stop="63786" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="376" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="527" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62755" g_stop="62722" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="561" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E205596" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64070" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACAT</genome_strand>
        <mrna_strand>TTATTGCTTACCAGTTTTGGATTCATATAGGCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTTTNCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366307" ref_strand="+" ref_description="SGN-E366307 [cLPT-1-A21]">
      <seq>tcatttggaagtgtttattgcttaccagtttcggattcacatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctctggtggacaataccatggtgggtatgagggtgcgcaatatcatgggggttacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtataaggacagtactacttgggacggaccaactacatcagtggatgaattgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaagggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcttcttcaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64381" stop="62598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64074" g_stop="63786" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="299" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="390" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63033" g_stop="62898" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="526" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E366307" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64074" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTT</genome_strand>
        <mrna_strand>GTGTTTATTGCTTACCAGTTTCGGATTCACATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCTGGTGGACAATACCATGGTGGGTATGAGGGTGCGCAATATCATGGGGGTTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATAAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATTGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAAGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCTTCTTCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249529" ref_strand="+" ref_description="SGN-E249529 [cLEF-56-N17]">
      <seq>ttttctctggtcttttatgtagacctcaaatcaatagtcggttgtctttctgacggttggtgggtggtcattattttgtactgatgagggcaacttgtttatgatgaccaatatattatgctgatattacaattttcgagaagattgtcgttttccctcagctgattatcggttctgtgtttattgcttaccagttttggattcatatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="64763" stop="63682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64463" g_stop="64288" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64287" i_stop="64075" i_length="213">
            <donor d_prob="0.594" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64074" g_stop="63982" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E249529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64463" e_stop="64288"/>
          <exon e_start="64074" e_stop="63982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTGGTCTTTTATGTAGACCTCAAATCAATAGTCGGTTGTCTTTCTGACGGTTGGTGGGTGGTCATTATTTTGTACTGATGAGGGCAACTTGTTTATGATGACCAATATATTATGCTGATATTACAATTTTCGAGAAGATTGTCGTTTTCCCTCAGCTGATTATCGGTTCTGTTAGTAGTCATGTTGAATTTACTTTAGTATTCAGATGCTACCTTATCTTTTTTGTGATTTTCTTGATCATTAATTTATAGATGAGCAGTTTCAACTCTGCCGATAGTTCATGTTAGTTTTGTTACTTATAGGATCAATTCGAGATTGCTAGCAGATACAGATGATCCAGTTCACAAGCAGTTCCTAATAAATATCCTTTTTTGGCTTTGCAGGTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTG</genome_strand>
        <mrna_strand>TTTTCTCTGGTCTTTTATGTAGACCTCAAATCAATAGTCGGTTGTCTTTCTGACGGTTGGTGGGTGGTCATTATTTTGTACTGATGAGGGCAACTTGTTTATGATGACCAATATATTATGCTGATATTACAATTTTCGAGAAGATTGTCGTTTTCCCTCAGCTGATTATCGGTTCT.....................................................................................................................................................................................................................GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738042" ref_strand="+" ref_description="SGN-E738042 [LC12AF01]">
      <seq>cccttattagttgagtgaaaaaagagaacagcgacctcttctctattttcttcccttaattatgtgtctctctctcacacacacagagagagacaaagaaaaccagaatacatatgtcaaagttcatcttcttattttaagaaaaaatatgtttagctgaattatatttccagaaggcgattgcagcatagagtagaggacgagaaataaaaaagaaacgacagcagacagcagagaaatagagagagacactcacaacagctttgcctttcaaatcccacgaagagaaaacgatagctgagaaacctgcaaaaaaactcttatgagtagaagaaaagagatgatgaagaagaagacaacgctgccatgggaatagcaacacaaccaattacacttcgtccttgtcacaaatatccagtaattcaacaagttgtagaaaatctcaattctatgtcccaagattatcatcaccacagtctcttcagtttccctaatgggttcgagagatcacaagccgaacagcagcagcaccagcaccagcaagctcaacagatccgtcgagataaattgcgagtgcaaggattcgaaccgtttgaagatgaaacaagtggcctaccaacagtttatgagactgctggaatgttatctgagatgtttaatttccctcctggaaacgccgcaaccaacgcagcggaattattagaaactcaattcaatccgaattttagacagccgaatccacggattcatgctgctgctgccatggggaacgagtggttcggcaaccaccgacaaggtatggtagtgggtggaggtgcaagtagtcaaccattggggatatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="82664" stop="84338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82959" g_stop="83285" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83286" i_stop="83518" i_length="233">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83519" g_stop="84038" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="848" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E738042" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82959" e_stop="83285"/>
          <exon e_start="83519" e_stop="84038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAGGTTTGTGCTTACATGAATAAAGCTGATTATCAGTTTTCTTTCTTTCTTTTTTTTTATAAAAAAAAACAAACAAAATAAATAAATTAAGAAAGAGTCTTTTTCTCTCCCTTCCTCACCTCTTACTCTTTGTCACACTTATTATCTTTTTCAATCTCCTGACAATAATTGTATCCCATGATGAATTATTTTAATGATTATAAACCGATTTTAACTATTTCATGCCCGATCCACAGTAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATT-GGGATATGCAAAAA</genome_strand>
        <mrna_strand>CCCTTATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAG.........................................................................................................................................................................................................................................TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATTGGGGATATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364873" ref_strand="+" ref_description="SGN-E364873 [cLPT-4-J3]">
      <seq>ttttcttcccttaattatgtctctctctcacacacacacagagagagacaaagaaaaccagaatacatatgtcaaagttcatcttcttattttaaaaaaaaatatgtttgttggaagcttagctcaattatatttccagaaggcgattgcagcatagagtagagcacgagaaataaaaaagaaacgacagcagacagcagagaaatagagagagacactcacaacagctttgcctttcaaatcccacgaagagaaaacgatatctgagaaaccctttttccgacctgcaaaaaaactcttatgagtagaagaaaagagatgatgaagaagaagacaacgctgccatgggaatagcaacacaaccaattacacttcgtccttgtcacaaatatccagtaattcatcaagttgtagaaaatctcaattctatgtcccaagattatcatcaccacagtctcttcagtttccctaatgggttcgagagatcacaagccgaacaacagcagcagcagcaacagcaccagcaagctcaacagatccgtcgagataaattgcgagtgcaaggattcgaaccgtttgaagatgaaacaagcgggctaccaacagtttatgagactgctggaatgttatctgagatgtttaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="82704" stop="84156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83004" g_stop="83266" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83267" i_stop="83427" i_length="161">
            <donor d_prob="0.565" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83428" g_stop="83459" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="305" r_length="31" r_score="0.531"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83460" i_stop="83518" i_length="59">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83519" g_stop="83856" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="649" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E364873" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83004" e_stop="83266"/>
          <exon e_start="83428" e_stop="83459"/>
          <exon e_start="83519" e_stop="83856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATG--T-TT---AGC-T-G---AATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAGGTTTGTGCTTACATGAATAAAGCTGATTATCAGTTTTCTTTCTTTCTTTTTTTTTATAAAAAAAAACAAACAAAATAAATAAATTAAGAAAGAGTCTTTTTCTCTCCCTTCCTCACCTCTTACTCTTTGTCACACTTATTATCTTTTTCAATCTCCTGACAATAATTGTATCCCATGATGAATTATTTTAATGATTATAAACCGATTTTAACTATTTCATGCCCGATCCACAGTAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCG---AACAGCAGCAGCA-C--CAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</genome_strand>
        <mrna_strand>TTTTCTTCCCTTAATTATGTCTCTCTCTCACACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAAAAAAAATATGTTTGTTGGAAGCTTAGCTCAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGCACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATATCTGAGAAACCC.................................................................................................................................................................TTTTTCCGACCTGC-AAAAAAACTCTTATGAG...........................................................TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCATCAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAACAGCAGCAGCAGCAACAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGCGGGCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205422" ref_strand="+" ref_description="SGN-E205422 [cLEC-28-H13]">
      <seq>tggaagaggtaaattgaagaagaataacaacaaagcagcagccaataaccctagtggtggcgctaacaatgaagcttcttcaaaagatgttcctactttgtccgctgctgatagaattgaacatcagagaaggaaggtcaaacttttatctatgcttgatgaggtagataggaggtacaatcattactgtgaacaaatgcagatggttgtgaattcgtttgatttagtgatgggtttcggggcagcagttccttatacagcactagcacagaaggcaatgtcgagacatttcaggtgtttaaaggatgcaataggagcacagttgaagcagagttgtgagttattaggagagaaagatgcaggaacttcgggattgactaaaggagaaactccgaggcttaagatgcttgaacaaagtttgaggcaacaaagggcgtttcaccaaatgggaatgatggaacaagaggcttggagaccacaaagaggcttaccggaacgttctgtcaatattttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="84280" stop="85823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84580" g_stop="84742" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85171" g_stop="85523" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="516" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E205422" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84580" e_stop="84742"/>
          <exon e_start="85171" e_stop="85523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAGGCATGTATCCTAATCTCTCTCTCTTATCTCTCTATATCTTACGGGGTCAATGACCAATCATTGTTGTTTGTTTTAATCTCTTAATTAAACAAACAAACATAAAAAAATCTTACAGAAAGTTGCGGCATTTCTTGTGGAGTTAATTATATATATTTTATAAACAAGGACTAGAAAATGCCGGCTAAGGGATTAGATTTCGTGATTTCCATAGATTTTTTTTATTACATTCTGATTAAGAAATCCGTATTATTAGAATAAATAAAGAGTAATTCAACGGTTTTAGATTTTCTACGAGTACACGGAGATTAAATGATAATTATATATATTAGCAAGTAAGCAAACAAAGTCCGTTTGGTTAATGTTAATACATTTGTTTATTCAAATACTAGCACTTGACATGTACTAAGAGTCAATAATGTTGTAAGCAGGTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAG</genome_strand>
        <mrna_strand>TGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289552" ref_strand="+" ref_description="SGN-E289552 [cLET-3-D16]">
      <seq>aataacaacaaagcagcagccaataaccctagtggtggcgctaacaatgaagcttcttcaaaagatgttcctactttgtccgctgctgatagaattgaacatcagagaaagaaggtcaaacttttatctatgcttgatgaggtagataggaggtacaatcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="84302" stop="85494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84602" g_stop="84742" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85171" g_stop="85194" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="165" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E289552" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84602" e_stop="84742"/>
          <exon e_start="85171" e_stop="85194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAGGCATGTATCCTAATCTCTCTCTCTTATCTCTCTATATCTTACGGGGTCAATGACCAATCATTGTTGTTTGTTTTAATCTCTTAATTAAACAAACAAACATAAAAAAATCTTACAGAAAGTTGCGGCATTTCTTGTGGAGTTAATTATATATATTTTATAAACAAGGACTAGAAAATGCCGGCTAAGGGATTAGATTTCGTGATTTCCATAGATTTTTTTTATTACATTCTGATTAAGAAATCCGTATTATTAGAATAAATAAAGAGTAATTCAACGGTTTTAGATTTTCTACGAGTACACGGAGATTAAATGATAATTATATATATTAGCAAGTAAGCAAACAAAGTCCGTTTGGTTAATGTTAATACATTTGTTTATTCAAATACTAGCACTTGACATGTACTAAGAGTCAATAATGTTGTAAGCAGGTAGATAGGAGGTACAATCATTAC</genome_strand>
        <mrna_strand>AATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAAGAAGGTCAAACTTTTATCTATGCTTGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGGAGGTACAATCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210435" ref_strand="+" ref_description="SGN-E210435 [cLEC-35-K11]">
      <seq>ggaaggtcaaacttttatctatgcttgatgaggtagataggaggtacaatcattactgtgaacaaatgcagatggttgtgaattcgtttgatttagtgatgggcttcggggcagcagttccttatacagcactagcacagaaggcaatgtcaagacatttgaggtgtttaaaggatgcaatatgagcacagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="84411" stop="85633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84711" g_stop="84742" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85171" g_stop="85333" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="195" r_length="163" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E210435" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84711" e_stop="84742"/>
          <exon e_start="85171" e_stop="85333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTCAAACTTTTATCTATGCTTGATGAGGCATGTATCCTAATCTCTCTCTCTTATCTCTCTATATCTTACGGGGTCAATGACCAATCATTGTTGTTTGTTTTAATCTCTTAATTAAACAAACAAACATAAAAAAATCTTACAGAAAGTTGCGGCATTTCTTGTGGAGTTAATTATATATATTTTATAAACAAGGACTAGAAAATGCCGGCTAAGGGATTAGATTTCGTGATTTCCATAGATTTTTTTTATTACATTCTGATTAAGAAATCCGTATTATTAGAATAAATAAAGAGTAATTCAACGGTTTTAGATTTTCTACGAGTACACGGAGATTAAATGATAATTATATATATTAGCAAGTAAGCAAACAAAGTCCGTTTGGTTAATGTTAATACATTTGTTTATTCAAATACTAGCACTTGACATGTACTAAGAGTCAATAATGTTGTAAGCAGGTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGA</genome_strand>
        <mrna_strand>GGAAGGTCAAACTTTTATCTATGCTTGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGCTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCAAGACATTTGAGGTGTTTAAAGGATGCAATATGAGCACAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320236" ref_strand="+" ref_description="SGN-E320236 [cTOB-21-K6]">
      <seq>atctgttggcaagacagactggtctctccagaaatcaggtatcaaattggttcattaatgcgagggttcggttgtggaaacccatggtagaagatatgtatcaacaagaagccaaagatgaagatgagaatagccaaagccaaaacagtggcaataatataattgcacaaacaccaacgcctaatagcctgactaactcttcatctactaatataacaacggcaacagcagcagcaacaacaacaacagcccctacaactacgacagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="86604" stop="88519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86904" g_stop="86941" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86942" i_stop="87986" i_length="1045">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87987" g_stop="88219" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="271" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E320236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86904" e_stop="86941"/>
          <exon e_start="87987" e_stop="88219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAGGTTTGCTTTATTTCTATTGTGAATCCTCTGTACTTTCTCTTTCAAGCTTTCTTATTCACATTATGCATATGCATATGCTATACTTTTTGTTTTTTTTTTCTTCTATGAAATTTAAACTAGTACTTTTACTTAACTTTCCAAGATCTTTAGTTAGGATACGAAAAACAAAAATATAGTGCAACCTCAAGATGATTTTGAATCTCCTAAACCATAGAGGGTAGTATTTCTTTTTTAGTTTCAAAAAAATATAGAGTTAATTTAGCTCAAGAGATATTGAATTAATTATTACCAATAAAAATTGTTAAAAATAAAAGAAGTGATTTTATGTGGTGCATGACTTTCTTTTTCTTTTCTTAGGGGTAGAGAATGAACATTTTTTCTATTTATATTATTTCTACAAAGACATAAATTCTAGGTTTGTGAAAGAAAATCTTAGGAACAGTAAGTGCAGAGGCAAGGTATACATTTTTCCACGACCCATTTAAGTTTACAGCTCTGTTTGCGCATACTCCCTCCATTCCCTCTTTTGTCTGGTGAATGTTGAACCCAACCACAATTATTAATTAAAAAATGTCATAGGTTGAAATGTCATGTTTTTTTTTTCTTCCTCTTTAAGACAAAAATTAATTTCAAGAAACTGAAAAATGTAATGTTGGTCATACATGTTCTCAATTTAGTGACATGATTGGATCTTATTCACTGAAAGATGAAATACAATTAACACGTGTGGGGTAGTATATATTTACTCTTTTGAACGCTTCTACACTTCTATTCTTAACTCCCTTTCACATCATCTATCTTTTCATTCTTCTCCAGATATTTTTTAATTCTATTTTTCGTATGATATATTTAATCACATAAGATTAAAGAAAATTTTGATATATTTTACAGTATGTATTTATAAGTGATTGAATTTTGTATTTGTGGACATCAGACAAATGTATTGAAACAGAAGAAGATAGGATAGTACATGAAAGTTAATCTCTTATTATAGAAAACAAGAGTTTTAATTAATGTTGTGTATATGAATGTGTTAATTATTCAGGTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACT</genome_strand>
        <mrna_strand>ATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227196" ref_strand="+" ref_description="SGN-E227196 [cLEL-30-K1](-)">
      <seq>agtttcctcaagtcaggtgataattgtccaaatcttcagagagcatttgaagtctggtggcgtcgtacatttgtcagaccttatgcagagacaggaagtacccgcccattagaccatgttacgactccaaaggtaacagaacattagacgtttatggtatcatttaaaaggaaattgttgaagatcagtgttaagttgaattgaaggagacttctgttgtatgcaatgaagaaagctcgggggctctgtcgaatcaaggataaattactcatctatataaggtgtctaactgattccttgtgtgaatcatgtaaatttagagtatcatttgaattgtccaatttggtgtgttagtgatttgtaagaggtatgtaatacaagttggttgtgttaaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="95354" stop="94353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95054" g_stop="94661" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E227196" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95054" e_stop="94661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCAAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</genome_strand>
        <mrna_strand>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCGAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327194" ref_strand="+" ref_description="SGN-E327194 [cTOC-18-P16]">
      <seq>aatttttcaattcatataggaggggagctcatcattccactctgttaaatctctgatttggtggttcccttcatgcttgacatcaaagctttcattcaatcattttcaatgcctcttccttggacttttaaattaaaagatttggggttttcaagaaaatctcagatagctctctctgtttgtagttgagtatttgttgttttctctatttcaagaatttgggtgtttcaagaatcccttttgtcctgccattttacacctttaggagtggtgagtttcaactcttctttctttgtttcttgacaactatactgttaaaggtttgatcttttgttttgtttgctgtccttttggagaacgaaagaaaggaacaatttgtgttttttttattgttaagtgttggagtagtagctatcttttatcagaggggaaaagattagctctttgatgttttgtcctaattagtagatattcattcttatgatcaaagagttccttagttctgtgtagtcaacctgatttcaatttcatcatcccttaagtaaaaaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="99042" stop="97889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98742" g_stop="98189" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E327194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98742" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</genome_strand>
        <mrna_strand>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336728" ref_strand="+" ref_description="SGN-E336728 [cTOE-5-B1]">
      <seq>ttttaaattaaaagatttggggttttcaacaaaatcctagatagctctctctgtttggagttgagtatttggtggtttctctatttcaagaatttgggtgtttcaagaatcccttttgtcctgcccttgtacacctttacgagtggtgagtttcaactcttctttctttgtttcttgacaactatactggtaaaggtttgatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="98917" stop="98111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98617" g_stop="98411" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E336728" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98617" e_stop="98411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTT</genome_strand>
        <mrna_strand>TTTTAAATTAAAAGATTTGGGGTTTTCAACAAAATCCTAGATAGCTCTCTCTGTTTGGAGTTGAGTATTTGGTGGTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCCTTGTACACCTTTACGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGGTAAAGGTTTGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324093" ref_strand="+" ref_description="SGN-E324093 [cTOC-3-B11]">
      <seq>aaaatctatgtgcccctctaatattaaaacagccttcatcggggtaaaatatatgggaatgggacttcgtttaagaatctgatcatatatatattcccggacatacaatttttaattaagagattttgaatttaaattttattttattttatttttttccgtattacattatttttactagggagcatggaaattttgcggcgcgaattctaaatgaaaaacaaaagaaacaaatagagaagacctaactatgagtatgatctgtttacccaatttaaaaatctcgaggctctttatatttcattttatttttaggacaaatatatgttgttgttctaattgaatatattcgataaataaagtaaacataaaggaattagagaaaaatttgataattgaagtagtgaaaaatgtaaattatggagtaatacctgttaacagaaaaattaacaggaaagctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="101442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="101142" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-E324093" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="101142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</genome_strand>
        <mrna_strand>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGGGGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378832" ref_strand="+" ref_description="SGN-E378832 [TUS-1-H12](-)">
      <seq>aaagcatggatcatcagcttgcacacgttggtttttatgcaaggcgagatatacttgcaggtgaagaactgacctatcactatagatacaaactattgcccggagaagggtctccatgcctgtgtggatcctctaattgcaggggacgtctttactaaatcctctacttaatagattgtgcattcagaggtttatgaattcagatctgtagagattcggaatcccagaggaatggtgtgttagcaggaagcaaaaagtttgtaattgtccttagtttatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="104022" stop="102892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103722" g_stop="103673" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103672" i_stop="103425" i_length="248">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.467" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103424" g_stop="103192" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="284" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E378832" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103722" e_stop="103673"/>
          <exon e_start="103424" e_stop="103192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATGGATCATCAGCTTGCACATGTTGGTTTTTATGCAAGGCGAGATGTATGTTCTCTCTCCTCTTTGGTAAATATTGGTCAAGTGACGATGCACCATTGTATTAGTCAGATCATGAAAAAAAAGATTATTGCTGCTTGTTCTTATTTTTTCTACTGGATTTTTTTTGGGTAACTTGATTTGACCTCAGCTAGGACTGGGTTTATCCCCTCATGTCTCAAGTTATTCATTGTGCCCCCTCCTCTTTCGCGTTTCATGACTGACATATTGTGTGCCCCCTCGATTTCCTTGAGCAGATACTTGCAGGTGAAGAACTGACCTATAACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCC-GAGGACTGGTGTGTTTGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</genome_strand>
        <mrna_strand>AAAGCATGGATCATCAGCTTGCACACGTTGGTTTTTATGCAAGGCGAGAT........................................................................................................................................................................................................................................................ATACTTGCAGGTGAAGAACTGACCTATCACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCCAGAGGAATGGTGTGTTAGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315481" ref_strand="+" ref_description="SGN-E315481 [cTOA-22-B24]">
      <seq>gcacacactggatggacagccacaaaaaggaagcccaatggcttttcaggggttatgcttgtgctatctgtctggattcttttactaataagaaagttttggaaactcatgtgcaggaaaggcaccattcacagtttgttgaaaattgcatgctttttcagtgtattccgtgtactagcaattttgggaactcagaggagttatggtcccacgtgctcaccgcacatccttccagttttagatggtctcatactgctcaagagaatcattttcctgcaagtgaggttgcatcagagaagcctgatataggcaactccttgtcgacacagaatttcaattcagagaaccagtctggtttccgaaaattcatctgcagattttgtggcctgaaatttgacttgctacctgatctaggccgccatcatcaggctgctcacatgggtcctaatcctgttggctctcatatctccaagaagggcatccgtttatatgctcataaattgaagtcaggaagacttagccgtccaaaattcaagaagggtctcggatctgtagcatataggattaggaacagaaatgctcagaatatgaagagacgcatcctgtcatcgaactccattattagtggaaaaccttcgattcaacctagtgcaaccgaggcagctggtctaggtagactgggagaatcccactgcttagatattgcaaagatattgtttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="107489" stop="106350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107372" g_stop="106650" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E315481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107372" e_stop="106650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</genome_strand>
        <mrna_strand>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGAATCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317229" ref_strand="+" ref_description="SGN-E317229 [cTOA-28-K10]">
      <seq>acagtttgttgaaaattgcatgctttttcagtgtattccgtgtactagcaattttgggaactcagaggagttatggtcccacgtgctcaccgcacatccttccagttttagatggtctcatactgctcaagagaatcattttcctgcaagtgaggttgcatcagagaagcctgatataggcaactccttgtcgacacagaatttcaattcagagaaccagtctggtttccgaaaattcatctgcagattttgtggcctgaaatttgacttgctacctgatctaggccgccatcatcaggctgctcacatgggtcctaatcctgttggctctcatatctccaagaagggcatccgtttatatgctcataaattgaagtcaggaagacttagccgtccaaaattcaagaagggtctcggatctgtagcatataggattaggaacagaaatgctcagaatatgaagagacgcatcctgtcatcgaactccattattagtggaaaaccttcgattcaacctagtgcaaccgaggcagctggtctaggtagactgggagatccccactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="107489" stop="106376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107242" g_stop="106676" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-E317229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107242" e_stop="106676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTT</genome_strand>
        <mrna_strand>ACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>87</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9119" PGL_stop="10563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9119" e_stop="10563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9119" e_stop="10563" e_length="1445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9119" stop="9420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9235" stop="9813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9776" stop="10563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9776" stop="10553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</gDNA_template>
            <first_frame> K  K  L  V  A  Q  R  L  F  D  S  Y  K  I  S  R  P  S  L  S  T  C  R  I  C  S  S  T  M  T  K  S  M  A  S  P  N  P  E  R  I  A  P  D  P  G  E  G  A  F  F  R  R  S  L  H  R  S  S  L  F  Q  S  L  A  T  S  S  E  L  R  S  F  P  I  G  E  K  L  R  Q  E  L  R  G  M  D  I  G  R  D  R  I  R  L  D  A  L  I  S  P  P  Q  Q  K  L  L  P  E  I  E  S  E  A  E  E  E  K  F  T  V  A  D  A  K  K  V  M  R  L  A  Q  L  E  V  V  K  S  R  L  R  Q  M  E  N  D  W  I  S  F  P  E  F  F  Q  I  C  N  G  A  S  S  N  S  D  Q  A  I  E  F  A  K  M  L  D  Q  S  G  I  V  L  V  L  G  N  V  V  F  L  K  P  D  K  V  G  F  L  L  F  F  F  S  D  S  C  F  F  P  L  *  N  F  Q  C  G  F  P  *  L  A  M  I  Q  I  L  Q  D  V  Y  V  H  Y  C  T  A  E  K  Y  *  *  V  V  T  N  I  T  T  F  F  F  S  L  C  I  T  S  L  P  K  T  D  R  I  S  S  I  L  Y  V  F  R  Q  E  S  Q  Q  S  Y  S  R  S  L  K  R  D  G  D  F  Y  K  G  L  H  Q  L  D  H  F  Q  T  P  Q  L  T  P  L  N  T  P  F  P  L  N  S  K  H  L  G  R  K  *  C  L  S  *  K  V  F  F  A  K  T  E  I  V  I  Y  *  N  F  F  K  L  I  V  W  W  R  R  G  S  I  E  S  K  N  *  *  I  L  P  Q  K  E  T  K  Y  S  Y  S  L  S  T  L  Q  L  L  *  L  C  F  L  I  L  D  A  S  D  N  L  P  S  L  S  *  E  F  R  I  L  S  L  C  L  S  A  C  V  I  V  S  D  N  I  D  *  L  A  N  P  I  *  M  N  A  C  K  *  E  D  V  S  H  L  I  M  *  *  G  A  *  S  G  V  L  L  F  Y  P  S  I  L  V  P  C  F  V  A  T  G  G  E  S  H  G  R  L  N  A  K  A  F  G  S  A  K  *  P  T  N  D   </first_frame>
            <second_frame>  K  N  L  *  L  N  V  F  S  I  H  T  K  L  V  V  L  P  Y  Q  H  A  V  F  V  P  Q  P  *  P  N  R  W  L  L  L  I  L  K  G  *  P  Q  I  P  A  R  V  L  F  S  V  D  L  S  T  E  A  L  C  S  N  H  *  Q  P  R  R  S  S  G  L  F  P  S  V  K  S  S  V  R  N  *  E  G  W  T  L  V  E  I  G  *  D  W  M  H  S  S  H  R  R  N  K  N  C  C  R  R  L  S  Q  K  P  R  R  R  N  S  R  W  R  M  Q  R  R  L  *  D  W  H  N  W  R  W  *  N  R  G  *  G  R  W  R  M  T  G  F  L  F  R  N  F  F  R  S  A  M  A  L  L  Q  T  P  I  K  P  *  N  S  Q  R  C  S  I  N  Q  E  L  Y  L  F  W  E  T  S  Y  S  L  S  L  I  R  L  V  F  Y  Y  F  F  F  P  I  H  A  F  S  P  Y  K  I  F  N  V  D  F  H  N  L  P  *  Y  R  F  Y  K  M  S  M  C  I  I  V  L  L  R  S  I  D  K  L  *  Q  I  L  L  L  F  F  L  V  C  A  L  Q  V  Y  R  K  L  I  E  F  H  L  F  S  M  F  F  D  R  K  A  N  K  V  I  P  D  L  *  N  E  M  V  T  F  I  R  D  C  T  S  W  T  I  S  K  H  P  N  L  H  H  *  T  H  P  F  L  L  I  P  N  I  W  E  E  N  N  V  C  P  K  K  C  F  L  Q  K  L  K  L  L  F  T  E  T  F  L  S  *  *  F  G  G  E  E  V  P  *  S  P  K  I  S  K  S  Y  P  R  R  K  R  N  T  A  I  P  F  P  L  Y  S  S  S  S  C  V  F  *  Y  L  T  Q  V  T  I  C  L  P  C  H  R  N  S  E  F  *  V  C  V  *  V  R  A  *  L  C  L  I  I  *  I  N  *  R  I  Q  F  R  *  M  L  A  N  E  K  M  F  L  I  S  L  C  D  K  A  R  E  V  E  F  Y  C  F  T  Q  A  F  W  S  L  V  L  L  L  Q  V  V  K  A  M  E  G  L  M  P  R  P  L  A  Q  P  N  D  P  Q  M  M  </second_frame>
            <third_frame>   K  T  C  S  S  T  S  F  R  F  I  Q  N  *  S  S  F  P  I  N  M  P  Y  L  F  L  N  H  D  Q  I  D  G  F  S  *  S  *  K  D  S  P  R  S  R  R  G  C  F  F  P  S  I  S  P  P  K  L  F  V  P  I  I  S  N  L  V  G  A  P  V  F  S  H  R  *  K  A  P  S  G  I  E  R  D  G  H  W  *  R  *  D  K  T  G  C  T  H  L  T  A  A  T  K  I  V  A  G  D  *  V  R  S  R  G  G  E  I  H  G  G  G  C  K  E  G  Y  E  I  G  T  T  G  G  G  E  I  E  A  E  A  D  G  E  *  L  D  F  F  S  G  I  F  S  D  L  Q  W  R  F  F  K  L  R  S  S  H  R  I  R  K  D  A  R  S  I  R  N  C  T  C  F  G  K  R  R  I  P  *  A  *  *  G  W  F  S  I  I  F  F  F  R  F  M  L  F  P  L  I  K  F  S  M  W  I  S  I  T  C  H  D  T  D  F  T  R  C  L  C  A  L  L  Y  C  *  E  V  L  I  S  C  N  K  Y  Y  Y  F  F  F  *  F  V  H  Y  K  S  T  E  N  *  *  N  F  I  Y  S  L  C  F  S  T  G  K  P  T  K  L  F  Q  I  S  K  T  R  W  *  L  L  *  G  T  A  P  V  G  P  F  P  N  T  P  T  Y  T  I  E  H  T  L  S  S  *  F  Q  T  F  G  K  K  I  M  F  V  L  K  S  V  F  C  K  N  *  N  C  Y  L  L  K  L  F  *  A  N  S  L  V  E  K  R  F  H  R  V  Q  K  L  V  N  P  T  P  E  G  N  E  I  Q  L  F  P  F  H  F  T  A  P  L  V  V  F  S  N  T  *  R  K  *  Q  F  A  F  L  V  I  G  I  Q  N  F  K  F  V  S  K  C  V  R  D  C  V  *  *  Y  R  L  I  S  E  S  N  L  D  E  C  L  Q  M  R  R  C  F  S  S  H  Y  V  I  R  R  V  K  W  S  S  I  V  L  P  K  H  F  G  P  L  F  C  C  Y  R  W  *  K  P  W  K  A  *  C  Q  G  L  W  L  S  Q  M  T  H  K  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9119" stop="9748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLVAQRLFDSYKISRPSLSTCRICSSTMTKSMASPNPERIAPDPGEGAFFRRSLHRSSLFQSLATSSELRSFPIGEKLRQELRGMDIGRDRIRLDALISPPQQKLLPEIESEAEEEKFTVADAKKVMRLAQLEVVKSRLRQMENDWISFPEFFQICNGASSNSDQAIEFAKMLDQSGIVLVLGNVVFLKPDKVGFLLFFFSDSCFFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9839" stop="10081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVTNITTFFFSLCITSLPKTDRISSILYVFRQESQQSYSRSLKRDGDFYKGLHQLDHFQTPQLTPLNTPFPLNSKHLGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9613" e_stop="9697"/>
            <exon e_start="9935" e_stop="10427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.895" e_score="0.953"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="9613" e_stop="9697" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.895">
            <gDNA_intron_boundary i_start="9698" i_stop="9934" i_length="237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9935" e_stop="10427" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9613" stop="9697"/>
              <exon start="9935" stop="10427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG : GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</gDNA_template>
            <first_frame> S  S  H  R  I  R  K  D  A  R  S  I  R  N  C  T  C  F  G  K  R  R  I  P  *  A  *  *   : G  K  P  T  K  L  F  Q  I  S  K  T  R  W  *  L  L  *  G  T  A  P  V  G  P  F  P  N  T  P  T  Y  T  I  E  H  T  L  S  S  *  F  Q  T  F  G  K  K  I  M  F  V  L  K  S  V  F  C  K  N  *  N  C  Y  L  L  K  L  F  *  A  N  S  L  V  E  K  R  F  H  R  V  Q  K  L  V  N  P  T  P  E  G  N  E  I  Q  L  F  P  F  H  F  T  A  P  L  V  V  F  S  N  T  *  R  K  *  Q  F  A  F  L  V  I  G  I  Q  N  F  K  F  V  S  K  C  V  R  D  C  V  *  *  Y  R  L  I  S  E  S  N  L  D  E  C  L  Q  M  R  R  C  F  S  S  H  Y   </first_frame>
            <second_frame>  Q  A  I  E  F  A  K  M  L  D  Q  S  G  I  V  L  V  L  G  N  V  V  F  L  K  P  D  K  :  E  S  Q  Q  S  Y  S  R  S  L  K  R  D  G  D  F  Y  K  G  L  H  Q  L  D  H  F  Q  T  P  Q  L  T  P  L  N  T  P  F  P  L  N  S  K  H  L  G  R  K  *  C  L  S  *  K  V  F  F  A  K  T  E  I  V  I  Y  *  N  F  F  K  L  I  V  W  W  R  R  G  S  I  E  S  K  N  *  *  I  L  P  Q  K  E  T  K  Y  S  Y  S  L  S  T  L  Q  L  L  *  L  C  F  L  I  L  D  A  S  D  N  L  P  S  L  S  *  E  F  R  I  L  S  L  C  L  S  A  C  V  I  V  S  D  N  I  D  *  L  A  N  P  I  *  M  N  A  C  K  *  E  D  V  S  H  L  I  M  </second_frame>
            <third_frame>   K  P  *  N  S  Q  R  C  S  I  N  Q  E  L  Y  L  F  W  E  T  S  Y  S  L  S  L  I  R :   K  A  N  K  V  I  P  D  L  *  N  E  M  V  T  F  I  R  D  C  T  S  W  T  I  S  K  H  P  N  L  H  H  *  T  H  P  F  L  L  I  P  N  I  W  E  E  N  N  V  C  P  K  K  C  F  L  Q  K  L  K  L  L  F  T  E  T  F  L  S  *  *  F  G  G  E  E  V  P  *  S  P  K  I  S  K  S  Y  P  R  R  K  R  N  T  A  I  P  F  P  L  Y  S  S  S  S  C  V  F  *  Y  L  T  Q  V  T  I  C  L  P  C  H  R  N  S  E  F  *  V  C  V  *  V  R  A  *  L  C  L  I  I  *  I  N  *  R  I  Q  F  R  *  M  L  A  N  E  K  M  F  L  I  S  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9614" stop="9697"/>
                    <exon start="9935" stop="10081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAIEFAKMLDQSGIVLVLGNVVFLKPDKESQQSYSRSLKRDGDFYKGLHQLDHFQTPQLTPLNTPFPLNSKHLGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20790" PGL_stop="19896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20790" e_stop="19896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20790" e_stop="19896" e_length="895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20790" stop="19896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGTTACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATTGGG</gDNA_template>
            <first_frame> E  H  F  T  Q  S  L  V  K  E  S  E  L  L  L  V  Y  Q  K  V  *  Q  W  N  Y  A  V  F  C  A  K  H  V  N  S  L  S  T  F  W  P  F  *  F  Q  I  I  S  P  S  H  C  N  L  F  D  D  S  H  R  A  L  L  S  L  P  A  P  F  C  C  K  F  S  L  E  S  *  P  I  M  G  *  H  V  V  L  P  L  H  L  H  C  C  L  C  Y  L  L  P  L  P  P  P  F  S  L  P  P  L  P  Q  P  P  S  S  P  S  R  P  Y  P  C  R  S  L  P  L  Y  G  P  N  L  P  H  H  L  H  R  H  T  P  L  R  R  R  *  N  P  R  N  S  M  V  L  A  P  *  Q  N  H  R  F  P  M  A  P  L  F  P  S  R  H  A  P  F  R  T  C  L  L  L  V  L  H  F  L  P  I  S  L  P  P  H  A  T  Y  F  L  L  H  S  P  S  S  K  T  L  L  L  S  T  L  Q  P  L  H  T  H  I  Y  V  L  P  V  A  R  I  L  A  I  V  S  S  T  C  N  T  I  Y  N  A  F  I  F  C  G  L  R  L  Q  I  L  D  G  D  W  I  A  K  R  V  F  P  L  C  C  K  L  S  D  S  V  T  G  M  S  R  C  V  P  C  W  G  A  F  A  P  F  H  E  R  W  V  *  R  N  W  </first_frame>
            <second_frame>  N  I  S  L  K  A  S  *  K  N  R  S  Y  Y  W  C  T  K  K  S  S  S  G  T  T  Q  S  F  V  Q  N  T  L  I  H  Y  Q  L  S  G  L  F  N  F  K  S  F  L  H  L  I  A  I  C  S  M  I  H  I  V  R  Y  Y  L  S  Q  H  P  S  V  V  N  F  R  W  S  H  S  Q  S  W  G  N  T  W  F  F  L  F  T  S  I  A  A  Y  V  I  F  S  L  F  L  H  L  F  L  C  L  L  F  R  N  R  R  P  L  P  L  G  P  I  P  A  V  H  S  L  S  M  V  L  I  S  L  T  I  F  T  G  I  L  L  S  A  A  A  E  I  R  E  T  R  W  F  W  R  R  N  K  T  T  A  F  Q  W  L  L  C  F  P  L  G  T  R  P  S  G  R  V  F  F  W  S  Y  I  F  Y  L  S  R  F  L  H  T  L  R  T  F  F  S  I  L  R  R  R  R  L  S  F  F  Q  L  F  N  H  S  I  L  I  F  M  S  F  L  W  L  E  F  S  Q  S  F  Q  V  L  A  I  L  F  T  T  L  L  Y  S  A  V  Y  G  Y  R  F  W  T  A  I  G  L  P  S  A  C  F  P  F  V  V  S  C  Q  I  L  L  L  G  C  H  V  V  C  H  V  G  V  L  L  L  H  F  M  K  G  G  C  N  G  I  G </second_frame>
            <third_frame>   T  F  H  S  K  P  R  K  R  I  G  A  T  T  G  V  P  K  S  L  A  V  E  L  R  S  L  L  C  K  T  R  *  F  I  I  N  F  L  A  F  L  I  S  N  H  F  S  I  S  L  Q  F  V  R  *  F  T  S  C  V  I  I  S  P  S  T  L  L  L  *  I  F  V  G  V  I  A  N  H  G  V  T  R  G  S  S  S  S  P  P  L  L  P  M  L  S  S  P  S  S  S  T  F  F  S  A  S  S  S  A  T  A  V  L  S  L  S  A  L  S  L  P  F  T  P  S  L  W  S  *  S  P  S  P  S  S  P  A  Y  S  S  P  P  P  L  K  S  A  K  L  D  G  S  G  A  V  T  K  P  P  L  S  N  G  S  S  V  S  L  S  A  R  A  L  P  D  V  S  S  F  G  P  T  F  S  T  Y  L  A  S  S  T  R  Y  V  L  S  S  P  F  S  V  V  E  D  S  P  S  F  N  S  S  T  T  P  Y  S  Y  L  C  P  S  C  G  *  N  S  R  N  R  F  K  Y  L  Q  Y  Y  L  Q  R  F  Y  I  L  R  F  T  V  T  D  F  G  R  R  L  D  C  Q  A  R  V  S  P  L  L  *  A  V  R  F  C  Y  W  D  V  T  L  C  A  M  L  G  C  F  C  S  I  S  *  K  V  G  V  T  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20765" stop="19896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRSYYWCTKKSSSGTTQSFVQNTLIHYQLSGLFNFKSFLHLIAICSMIHIVRYYLSQHPSVVNFRWSHSQSWGNTWFFLFTSIAAYVIFSLFLHLFLCLLFRNRRPLPLGPIPAVHSLSMVLISLTIFTGILLSAAAEIRETRWFWRRNKTTAFQWLLCFPLGTRPSGRVFFWSYIFYLSRFLHTLRTFFSILRRRRLSFFQLFNHSILIFMSFLWLEFSQSFQVLAILFTTLLYSAVYGYRFWTAIGLPSACFPFVVSCQILLLGCHVVCHVGVLLLHFMKGGCNGIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22671" PGL_stop="25540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22671" e_stop="22872"/>
            <exon e_start="23849" e_stop="24764"/>
            <exon e_start="25526" e_stop="25540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.382" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22671" e_stop="22872" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.710">
            <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23849" e_stop="24764" e_length="916"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.382">
            <gDNA_intron_boundary i_start="24765" i_stop="25525" i_length="761"/>
          </intron>
          <exon e_serial="3" e_score="0.733">
            <gDNA_exon_boundary e_start="25526" e_stop="25540" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22671" stop="22872"/>
              <exon start="23849" stop="24764"/>
              <exon start="25526" stop="25540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22672" stop="22872"/>
              <exon start="23849" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22730" stop="22872"/>
              <exon start="23849" stop="24286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22732" stop="22872"/>
              <exon start="23849" stop="24106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22735" stop="22872"/>
              <exon start="23849" stop="24729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22737" stop="22872"/>
              <exon start="23849" stop="24239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22739" stop="22872"/>
              <exon start="23849" stop="24527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22740" stop="22872"/>
              <exon start="23849" stop="24539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22743" stop="22872"/>
              <exon start="23849" stop="24278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22752" stop="22872"/>
              <exon start="23849" stop="24373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22766" stop="22872"/>
              <exon start="23849" stop="24064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG : GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTT : AGAAAAAGTAAATAA</gDNA_template>
            <first_frame> I  *  P  S  P  G  Y  N  *  N  *  R  *  I  *  V  R  T  L  G  D  R  Q  G  E  K  P  *  I  L  S  S  M  E  S  I  L  V  Q  Y  *  *  L  K  G  S  I  T  A  F  *  L  R  S  I  H  C  L  *  I  P  L  L  F  F  *  I   : G  F  G  C  L  Q  T  S  D  I  S  N  S  N  K  T  E  *  D  A  G  L  N  Y  Q  G  I  *  K  L  F  F  F  L  W  R  W  E  Q  *  C  W  *  F  *  M  Q  H  M  F  *  I  G  P  R  S  H  C  D  T  L  W  S  P  F  L  L  A  M  S  V  *  M  V  T  S  S  L  T  V  P  *  M  P  C  L  *  G  T  Y  S  R  G  E  V  S  S  T  L  W  K  R  K  N  F  Y  *  S  P  I  K  T  N  S  W  P  *  N  S  *  *  T  C  W  T  T  T  *  N  C  S  S  T  *  T  K  S  F  S  *  S  W  I  W  A  H  G  R  I  V  S  N  S  N  C  K  I  W  *  F  Y  Y  V  C  W  F  W  W  I  A  P  F  I  A  Q  L  P  V  S  W  I  S  W  S  D  S  I  S  Y  R  I  K  S  P  F  W  I  Y  S  C  I  S  R  A  T  C  S  *  R  S  R  H  C  S  R  T  S  R  *  Q  S  Q  V  N  V  F  T  C  W  F  S  C  A  N  L  F  V  R  L  K  N  G  F  S  L  S  L  M  L  M  L  A  I  R  F  C  A  C  G  Y  V  N  S  A  L  T  L  K  L  L  L  T  L  V  I  L  *  M  R  A  L  C  Y  F  N  V  T  S  L  Y  L  C  N  V  Y  I  L  Y  T  *  S  G  S  S  S  L :   E  K  V  N   </first_frame>
            <second_frame>  F  D  R  L  P  G  I  T  E  I  R  D  E  F  R  *  E  L  W  E  I  D  R  V  K  S  P  R  F  F  L  L  W  S  Q  Y  L  F  N  T  N  N  *  R  A  Q  L  P  H  F  S  F  D  P  F  I  A  F  E  S  P  C  F  S  S  E  S  :  V  L  G  V  C  K  L  L  I  F  P  I  Q  I  K  L  S  E  M  Q  D  S  T  T  R  A  F  E  S  S  S  S  S  S  G  D  G  N  N  D  A  G  D  F  E  C  N  I  C  F  E  L  A  Q  D  P  I  V  T  L  C  G  H  L  F  C  W  P  C  L  Y  R  W  L  R  L  H  S  Q  C  H  E  C  P  V  C  K  A  L  I  Q  E  E  K  L  V  P  L  Y  G  R  G  R  T  S  T  D  P  R  S  K  P  I  P  G  L  E  I  P  S  R  P  A  G  Q  R  P  E  T  A  P  Q  P  E  P  N  H  F  P  N  H  G  F  G  H  M  G  G  L  F  P  T  A  T  A  R  F  G  N  F  T  M  S  A  G  F  G  G  L  L  P  S  L  L  S  F  Q  F  H  G  F  P  G  P  T  A  Y  P  T  A  S  N  H  H  F  G  Y  T  P  A  Y  H  G  P  H  V  R  N  A  Q  D  T  A  Q  G  Q  A  D  S  N  L  K  L  M  F  L  L  V  G  F  L  V  L  I  Y  L  L  G  *  R  M  D  S  V  Y  P  *  C  *  C  W  L  S  D  F  V  H  V  D  M  S  I  L  H  S  P  *  S  Y  Y  *  L  W  *  F  Y  R  C  E  H  S  V  T  L  M  *  Q  V  Y  I  C  V  M  C  I  F  C  I  L  K  V  V  L  A  R   : *  K  K  *  I  </second_frame>
            <third_frame>   L  T  V  S  R  V  *  L  K  L  E  M  N  L  G  K  N  S  G  R  *  T  G  *  K  A  L  D  S  F  F  Y  G  V  N  T  C  S  I  L  I  I  E  G  L  N  Y  R  I  L  A  S  I  H  S  L  P  L  N  P  L  A  F  L  L  N  R :   F  W  V  F  A  N  F  *  Y  F  Q  F  K  *  N  *  V  R  C  R  T  Q  L  P  G  H  L  K  A  L  L  L  P  L  E  M  G  T  M  M  L  V  I  L  N  A  T  Y  V  L  N  W  P  K  I  P  L  *  H  S  V  V  T  F  S  V  G  H  V  C  I  D  G  Y  V  F  T  H  S  A  M  N  A  L  S  V  R  H  L  F  K  R  R  S  *  F  H  F  M  E  E  E  E  L  L  L  I  P  D  Q  N  Q  F  L  A  L  K  F  L  V  D  L  L  D  N  D  L  K  L  L  L  N  L  N  Q  I  I  F  L  I  M  D  L  G  T  W  E  D  C  F  Q  Q  Q  L  Q  D  L  V  I  L  L  C  L  L  V  L  V  D  C  S  L  H  C  S  A  S  S  F  M  D  F  L  V  R  Q  H  I  L  P  H  Q  I  T  I  L  D  I  L  L  H  I  T  G  H  M  F  V  T  L  K  T  L  L  K  D  K  Q  I  A  I  S  S  *  C  F  Y  L  L  V  F  L  C  *  F  I  C  *  A  K  E  W  I  Q  S  I  P  D  A  N  V  G  Y  Q  I  L  C  M  W  I  C  Q  F  C  T  H  L  E  V  T  T  N  F  G  D  F  I  D  A  S  T  L  L  L  *  C  N  K  F  I  S  V  *  C  V  Y  F  V  Y  L  K  W  F  *  L  V  :  R  K  S  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22801" stop="22872"/>
                    <exon start="23849" stop="24565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQLPHFSFDPFIAFESPCFSSESVLGVCKLLIFPIQIKLSEMQDSTTRAFESSSSSSGDGNNDAGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLRLHSQCHECPVCKALIQEEKLVPLYGRGRTSTDPRSKPIPGLEIPSRPAGQRPETAPQPEPNHFPNHGFGHMGGLFPTATARFGNFTMSAGFGGLLPSLLSFQFHGFPGPTAYPTASNHHFGYTPAYHGPHVRNAQDTAQGQADSNLKLMFLLVGFLVLIYLLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24737" PGL_stop="24175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24737" e_stop="24175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24737" e_stop="24175" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24737" stop="24175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATATACACATTACACAGATATAAACTTGTTACATTAAAGTAACAGAGTGCTCGCATCTATAAAATCACCAAAGTTAGTAGTAACTTCAAGGTGAGTGCAGAATTGACATATCCACATGCACAAAATCTGATAGCCAACATTAGCATCAGGGATAGACTGAATCCATTCTTTAGCCTAACAAATAAATTAGCACAAGAAAACCAACAAGTAAAAACATTAACTTGAGATTGCTATCTGCTTGTCCTTGAGCAGTGTCTTGAGCGTTACGAACATGTGGCCCGTGATATGCAGGAGTATATCCAAAATGGTGATTTGATGCGGTAGGATATGCTGTCGGACCAGGAAATCCATGAAACTGGAAGCTGAGCAATGAAGGGAGCAATCCACCAAAACCAGCAGACATAGTAAAATTACCAAATCTTGCAGTTGCTGTTGGAAACAATCCTCCCATGTGCCCAAATCCATGATTAGGAAAATGATTTGGTTCAGGTTGAGGAGCAGTTTCAGGTCGTTGTCCAGCAGGTCTACTAGGAATTTCAAGGCCAGGAATTGGTTTTGAT</gDNA_template>
            <first_frame> K  I  Y  T  L  H  R  Y  K  L  V  T  L  K  *  Q  S  A  R  I  Y  K  I  T  K  V  S  S  N  F  K  V  S  A  E  L  T  Y  P  H  A  Q  N  L  I  A  N  I  S  I  R  D  R  L  N  P  F  F  S  L  T  N  K  L  A  Q  E  N  Q  Q  V  K  T  L  T  *  D  C  Y  L  L  V  L  E  Q  C  L  E  R  Y  E  H  V  A  R  D  M  Q  E  Y  I  Q  N  G  D  L  M  R  *  D  M  L  S  D  Q  E  I  H  E  T  G  S  *  A  M  K  G  A  I  H  Q  N  Q  Q  T  *  *  N  Y  Q  I  L  Q  L  L  L  E  T  I  L  P  C  A  Q  I  H  D  *  E  N  D  L  V  Q  V  E  E  Q  F  Q  V  V  V  Q  Q  V  Y  *  E  F  Q  G  Q  E  L  V  L   </first_frame>
            <second_frame>  K  Y  T  H  Y  T  D  I  N  L  L  H  *  S  N  R  V  L  A  S  I  K  S  P  K  L  V  V  T  S  R  *  V  Q  N  *  H  I  H  M  H  K  I  *  *  P  T  L  A  S  G  I  D  *  I  H  S  L  A  *  Q  I  N  *  H  K  K  T  N  K  *  K  H  *  L  E  I  A  I  C  L  S  L  S  S  V  L  S  V  T  N  M  W  P  V  I  C  R  S  I  S  K  M  V  I  *  C  G  R  I  C  C  R  T  R  K  S  M  K  L  E  A  E  Q  *  R  E  Q  S  T  K  T  S  R  H  S  K  I  T  K  S  C  S  C  C  W  K  Q  S  S  H  V  P  K  S  M  I  R  K  M  I  W  F  R  L  R  S  S  F  R  S  L  S  S  R  S  T  R  N  F  K  A  R  N  W  F  *  </second_frame>
            <third_frame>   N  I  H  I  T  Q  I  *  T  C  Y  I  K  V  T  E  C  S  H  L  *  N  H  Q  S  *  *  *  L  Q  G  E  C  R  I  D  I  S  T  C  T  K  S  D  S  Q  H  *  H  Q  G  *  T  E  S  I  L  *  P  N  K  *  I  S  T  R  K  P  T  S  K  N  I  N  L  R  L  L  S  A  C  P  *  A  V  S  *  A  L  R  T  C  G  P  *  Y  A  G  V  Y  P  K  W  *  F  D  A  V  G  Y  A  V  G  P  G  N  P  *  N  W  K  L  S  N  E  G  S  N  P  P  K  P  A  D  I  V  K  L  P  N  L  A  V  A  V  G  N  N  P  P  M  C  P  N  P  *  L  G  K  *  F  G  S  G  *  G  A  V  S  G  R  C  P  A  G  L  L  G  I  S  R  P  G  I  G  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40875" PGL_stop="37596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40875" e_stop="40657"/>
            <exon e_start="40563" e_stop="40471"/>
            <exon e_start="39665" e_stop="39587"/>
            <exon e_start="39110" e_stop="39032"/>
            <exon e_start="38876" e_stop="38837"/>
            <exon e_start="38754" e_stop="38620"/>
            <exon e_start="38478" e_stop="38341"/>
            <exon e_start="38039" e_stop="37596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40875" e_stop="40657" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.667">
            <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40563" e_stop="40471" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.839">
            <gDNA_intron_boundary i_start="40470" i_stop="39666" i_length="805"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39665" e_stop="39587" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39586" i_stop="39111" i_length="476"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39110" e_stop="39032" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39031" i_stop="38877" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38876" e_stop="38837" e_length="40"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38836" i_stop="38755" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38754" e_stop="38620" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38619" i_stop="38479" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38478" e_stop="38341" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38340" i_stop="38040" i_length="301"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="38039" e_stop="37596" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40875" stop="40657"/>
              <exon start="40563" stop="40471"/>
              <exon start="39665" stop="39587"/>
              <exon start="39110" stop="39051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40867" stop="40657"/>
              <exon start="40563" stop="40471"/>
              <exon start="39665" stop="39587"/>
              <exon start="39110" stop="39032"/>
              <exon start="38876" stop="38837"/>
              <exon start="38754" stop="38620"/>
              <exon start="38478" stop="38389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40863" stop="40657"/>
              <exon start="40563" stop="40550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39042" stop="39032"/>
              <exon start="38876" stop="38837"/>
              <exon start="38754" stop="38620"/>
              <exon start="38478" stop="38341"/>
              <exon start="38039" stop="37596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATG : GGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACA : ACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCG : ATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAG : GTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGA : GTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAG : TGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCATCTCCTGG : GCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTACCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCACAGATAATA</gDNA_template>
            <first_frame> D  L  P  A  A  K  S  T  G  C  Y  S  S  P  A  G  S  N  C  R  N  I  F  Y  *  N  A  T  V  F  I  Q  Y  *  M  Q  C  R  *  R  I  Q  H  *  K  S  G  F  E  K  S  N  V  H  S  G  D  G  F  R  R  K  I  L  G  C  R  F  E  K  Q  W  M  :  G  S  Y  R  N  L  Y  Q  Y  C  T  E  E  E  I  R  G  N  G  V  A  C  A  H  I  *  R  Q  *  T  T  :  T  G  S  P  R  Y  L  E  I  P  F  T  S  S  Y  L  H  P  S  S  F  G  C  W  *  S   : D  A  S  A  *  R  I  A  K  R  K  T  K  G  W  *  P  P  V  A  W  L  L  V  I  N  R :   C  L  W  R  L  W  W  C  I  G  *  *  R  :  V  S  T  *  L  D  D  *  I  G  Q  S  K  D  S  C  R  G  R  M  V  T  S  G  L  *  W  K  G  L  C  P  N  I  *  I  G  W  H  I  W  S  W  *  K  :  C  C  *  H  Y  S  Q  A  R  A  S  V  *  R  S  E  D  E  I  L  Q  A  L  Y  L  T  Y  S  R  C  *  H  L  S  G  S  *  G  Q  H  T  E  A  I  S  W  :  A  D  I  Q  C  S  *  *  R  S  C  S  *  R  A  G  I  *  V  C  *  E  L  G  *  G  E  M  A  R  P  P  N  L  Q  Q  L  C  *  R  G  K  V  S  N  P  A  G  R  F  K  G  R  E  A  S  L  Q  *  T  H  *  N  G  T  G  S  E  S  A  L  P  Y  L  *  I  W  I  A  E  H  Y  *  T  H  R  S  S  I  W  R  K  L  I  A  L  S  S  D  R  E  W  K  V  S  N  V  C  G  V  *  D  E  K  I  E  L  L  G  *  S  N  F  I  D  V  M  *  L  R  M  L  A  D  M  T  T  C  Y  P  F  Y  F  F  S  Q  I  I </first_frame>
            <second_frame>  I  C  R  L  P  N  Q  P  A  V  I  H  L  R  Q  G  Q  T  A  G  I  Y  S  I  K  T  P  Q  F  S  S  N  I  K  C  S  V  G  E  E  S  S  T  K  N  P  D  L  K  N  R  M  F  I  L  G  M  G  F  V  G  K  F  L  A  A  D  L  K  S  N  G  W :   E  V  T  G  T  C  T  S  T  A  R  K  K  K  L  E  E  M  G  L  H  A  H  I  F  D  A  N  E  P  Q :   Q  E  V  L  D  I  L  K  F  H  S  H  L  L  I  S  I  P  P  V  L  G  V  G  D  P  :  M  L  R  H  K  E  L  L  K  E  R  L  K  D  G  N  L  Q  W  L  G  Y  L  S  S  T   : G  V  Y  G  D  S  G  G  A  L  V  D  E  E :   F  P  P  S  S  T  T  E  L  A  K  A  R  I  A  A  E  E  G  W  L  H  L  A  C  D  G  R  V  S  A  Q  I  F  R  L  G  G  I  Y  G  P  G  R  S :   A  V  D  T  I  L  K  Q  E  P  L  S  K  G  Q  K  M  R  F  S  R  H  Y  T  S  R  I  H  V  A  D  I  C  Q  A  L  K  A  S  I  Q  R  P  S  P  G :   Q  I  Y  N  V  V  D  D  D  P  A  P  R  E  Q  V  F  K  F  A  R  N  L  V  E  E  K  W  P  G  H  L  I  F  N  N  S  A  E  E  V  K  S  L  I  P  Q  G  G  S  R  G  E  K  R  V  S  N  K  R  I  K  T  E  L  G  V  N  L  L  Y  P  T  Y  E  S  G  L  R  S  I  I  E  R  I  E  V  P  F  G  V  S  *  L  L  Y  H  Q  T  G  N  G  R  F  P  M  Y  V  V  F  R  M  K  R  L  S  Y  *  D  E  V  I  L  S  T  *  C  S  S  E  C  W  L  I  *  Q  L  V  I  L  F  I  F  F  H  R  *   </second_frame>
            <third_frame>   F  A  G  C  Q  I  N  R  L  L  F  I  S  G  R  V  K  L  P  E  Y  I  L  L  K  R  H  S  F  H  P  I  L  N  A  V  *  V  K  N  P  A  L  K  I  R  I  *  K  I  E  C  S  F  W  G  W  V  S  *  E  N  S  W  L  Q  I  *  K  A  M  D   : G  K  L  Q  E  L  V  P  V  L  H  G  R  R  N  *  R  K  W  G  C  M  R  T  Y  L  T  P  M  N  H   : N  R  K  S  S  I  S  *  N  S  I  H  I  F  L  S  P  S  L  Q  F  W  V  L  V  I  R :   C  F  G  I  K  N  C  *  K  K  D  *  R  M  V  T  S  S  G  L  V  T  C  H  Q  Q  :  V  F  M  E  T  L  V  V  H  W  L  M  K   : S  F  H  L  A  R  R  L  N  W  P  K  Q  G  *  L  Q  R  K  D  G  Y  I  W  L  V  M  E  G  S  L  P  K  Y  L  D  W  V  A  Y  M  V  L  V  E   : V  L  L  T  L  F  S  S  K  S  L  C  L  K  V  R  R  *  D  S  P  G  I  I  P  H  V  F  T  L  L  T  S  V  R  L  L  R  P  A  Y  R  G  H  L  L   : G  R  Y  T  M  *  L  M  T  I  L  L  L  E  S  R  Y  L  S  L  L  G  T  W  L  R  R  N  G  Q  A  T  *  S  S  T  T  L  L  K  R  *  S  L  *  S  R  R  E  V  Q  G  E  R  S  E  S  P  I  N  A  L  K  R  N  W  E  *  I  C  F  T  L  P  M  N  L  D  C  G  A  L  L  N  A  *  K  F  H  L  A  *  V  D  C  S  I  I  R  P  G  M  E  G  F  Q  C  M  W  C  L  G  *  K  D  *  A  I  R  M  K  *  F  Y  R  R  D  V  A  Q  N  A  G  *  Y  D  N  L  L  S  F  L  F  F  F  T  D  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40874" stop="40657"/>
                    <exon start="40563" stop="40471"/>
                    <exon start="39665" stop="39587"/>
                    <exon start="39110" stop="39032"/>
                    <exon start="38876" stop="38837"/>
                    <exon start="38754" stop="38620"/>
                    <exon start="38478" stop="38341"/>
                    <exon start="38039" stop="37760"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICRLPNQPAVIHLRQGQTAGIYSIKTPQFSSNIKCSVGEESSTKNPDLKNRMFILGMGFVGKFLAADLKSNGWEVTGTCTSTARKKKLEEMGLHAHIFDANEPQQEVLDILKFHSHLLISIPPVLGVGDPMLRHKELLKERLKDGNLQWLGYLSSTGVYGDSGGALVDEEFPPSSTTELAKARIAAEEGWLHLACDGRVSAQIFRLGGIYGPGRSAVDTILKQEPLSKGQKMRFSRHYTSRIHVADICQALKASIQRPSPGQIYNVVDDDPAPREQVFKFARNLVEEKWPGHLIFNNSAEEVKSLIPQGGSRGEKRVSNKRIKTELGVNLLYPTYESGLRSIIERIEVPFGVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="42112" PGL_stop="44271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42112" e_stop="44271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42112" e_stop="44271" e_length="2160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42112" stop="42734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42167" stop="42373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42590" stop="43030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42736" stop="43546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43030" stop="43620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43037" stop="43378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43227" stop="43988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43764" stop="44271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43776" stop="44234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43777" stop="44271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43777" stop="44127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</gDNA_template>
            <first_frame> A  Y  I  T  K  Q  Q  S  L  E  L  M  F  L  D  S  N  E  L  K  M  N  Y  S  H  L  I  F  V  F  T  I  I  L  A  Y  S  S  V  S  I  L  A  Q  Q  P  Y  F  G  T  G  T  N  D  C  S  S  Q  D  T  S  T  S  A  F  G  Y  L  C  N  G  V  N  R  T  C  Q  S  Y  L  T  F  R  S  Q  P  P  F  N  T  V  S  S  I  S  S  L  L  G  A  N  P  S  Q  L  S  Q  L  N  S  V  S  Q  N  A  T  F  N  T  N  Q  M  V  L  V  P  V  T  C  S  C  S  G  Q  F  Y  Q  S  N  A  S  Y  V  I  R  R  D  D  S  F  L  N  I  A  M  N  T  L  Q  G  L  S  T  C  Q  A  I  N  A  E  N  S  E  Q  A  N  N  L  V  V  G  S  R  I  N  V  P  L  R  C  A  C  P  T  Q  N  Q  T  N  N  G  T  N  Y  L  L  T  Y  L  I  A  S  G  E  F  V  S  F  I  S  D  K  F  G  V  D  F  R  A  T  L  A  A  N  S  I  P  E  D  A  P  T  V  F  P  N  T  T  L  L  V  P  L  S  T  P  P  L  S  S  Q  V  A  G  P  S  P  P  P  P  P  A  T  T  P  T  P  P  A  V  P  V  S  E  S  S  S  N  K  T  W  I  Y  V  V  A  G  V  V  G  G  L  V  A  L  C  I  L  G  V  V  V  F  F  L  F  F  R  K  K  E  K  K  A  D  P  Q  F  V  S  E  S  F  E  A  V  E  K  P  S  N  K  K  V  E  E  E  S  E  E  F  L  E  S  L  S  S  I  A  Q  S  V  K  V  Y  K  F  E  E  V  K  A  A  T  E  N  F  S  P  T  C  L  I  K  G  S  V  Y  R  G  T  I  N  G  D  F  A  A  I  K  K  M  S  G  D  V  S  K  E  I  N  L  L  S  K  I  N  H  F  N  L  I  S  L  S  G  I  C  F  H  D  G  H  W  Y  L  V  Y  E  Y  A  A  N  G  P  L  S  D  W  I  C  H  H  N  G  E  Q  K  S  L  S  W  A  Q  R  V  Q  I  S  F  D  V  A  T  G  L  N  Y  L  H  S  Y  T  S  P  P  H  V  H  K  D  L  N  G  D  N  I  L  L  D  G  D  L  R  A  K  I  A  N  F  G  L  A  R  S  A  D  G  Q  E  G  E  F  A  L  T  R  H  I  V  G  T  Q  G  Y  M  A  P  E  Y  L  E  N  G  L  V  S  P  K  L  D  V  Y  A  L  G  V  L  L  L  E  I  L  T  G  K  E  V  S  A  L  Y  E  G  S  N  T  N  L  A  E  L  L  I  P  V  L  N  D  D  N  A  K  E  S  L  S  N  F  V  D  P  S  L  Q  G  K  Y  P  V  E  L  A  F  A  M  V  R  L  I  D  N  C  L  M  K  D  P  S  H  R  P  N  T  D  E  I  V  Q  S  V  S  R  I  M  T  A  T  H  S  W  E  T  S  F  S  T  S  V  S  P  H  R  L  P  *  I  N  D  C  F  S  L  L  F  I  L  F  L  F  F  P  P  S  T  S  S  M  I  C  Y  V  Q  L  L  L  P  C  L  *  I  W  K  S  Y  C  T  I  Y  P  T  *  K  S  V  *  H  F  S  Q </first_frame>
            <second_frame>  L  I  *  Q  N  N  S  L  L  N  *  C  F  L  I  L  M  N  *  K  *  I  I  L  I  S  S  L  F  L  P  S  F  L  L  I  P  L  F  Q  F  L  H  N  S  L  I  L  E  L  E  Q  M  T  A  A  A  K  I  P  P  L  L  L  L  G  I  Y  A  M  A  L  T  V  L  A  N  L  I  *  P  S  D  L  N  P  L  S  I  L  C  P  Q  S  L  L  Y  S  V  L  I  L  H  S  S  L  S  S  I  L  F  L  K  M  L  P  L  T  P  I  K  W  F  L  F  L  S  L  V  L  V  Q  V  S  F  I  N  Q  M  H  L  M  L  S  E  G  M  I  V  S  *  I  L  Q  *  I  P  Y  K  D  C  Q  L  A  K  L  S  T  R  R  T  V  N  K  L  T  I  L  L  L  V  Q  E  L  M  F  L  C  D  V  L  V  L  H  K  T  K  L  I  M  V  Q  I  I  C  L  L  I  *  L  L  L  G  N  L  F  P  L  L  V  I  N  L  G  W  I  L  G  Q  L  L  L  L  I  V  Y  Q  K  M  L  L  L  S  F  Q  I  L  L  Y  *  F  L  Y  R  P  H  L  *  V  P  K  L  L  D  H  L  H  H  R  L  L  R  Q  H  Q  H  H  L  L  S  L  Y  R  R  A  A  R  T  K  L  G  Y  M  L  S  L  V  L  L  E  D  L  L  L  C  V  F  W  G  W  L  F  S  F  C  F  S  G  K  R  K  R  K  L  I  H  S  L  F  L  K  A  L  K  L  L  R  N  R  R  I  R  K  L  K  K  N  Q  R  S  F  W  K  V  Y  P  A  *  L  N  L  L  R  F  T  S  L  K  R  L  K  Q  P  Q  K  I  S  V  L  H  V  *  L  R  D  L  F  I  G  A  R  *  M  G  I  L  L  L  *  R  K  *  V  V  M  Y  Q  R  K  L  I  C  *  A  K  S  I  I  L  I  L  L  V  Y  R  E  F  V  F  M  M  V  T  G  I  L  Y  M  N  M  L  P  M  D  H  *  V  I  G  Y  V  T  I  M  V  S  R  S  H  *  V  G  H  K  E  Y  K  F  L  L  M  W  L  Q  D  L  T  I  S  I  A  T  H  P  H  L  M  F  T  R  I  *  T  V  I  I  Y  F  L  M  V  I  *  E  P  R  L  L  T  L  V  *  Q  G  Q  Q  M  D  K  K  V  S  L  H  *  Q  G  T  *  L  G  P  K  A  T  W  H  L  S  I  W  R  M  G  *  S  H  R  S  W  M  S  M  H  W  E  F  C  C  W  R  F  S  P  G  K  K  F  P  L  Y  M  K  V  Q  T  Q  T  W  L  S  C  *  S  R  C  L  M  M  I  M  Q  R  R  V  *  A  T  S  L  T  L  L  C  K  G  S  T  L  W  N  L  L  L  P  W  S  D  *  S  I  T  A  *  *  K  I  P  H  I  A  L  I  R  M  R  L  C  N  L  F  Q  E  L  *  Q  P  H  T  H  G  K  R  H  L  A  L  Q  C  H  H  I  D  C  P  R  S  M  I  V  F  L  C  C  L  F  C  F  C  F  F  L  L  P  H  L  A  *  F  V  M  C  N  C  Y  Y  L  V  Y  E  F  G  R  A  I  A  P  F  I  L  H  K  N  Q  F  N  I  S  V   </second_frame>
            <third_frame>   L  Y  N  K  T  T  V  S  *  T  N  V  S  *  F  *  *  T  E  N  E  L  F  S  S  H  L  C  F  Y  H  H  S  C  L  F  L  C  F  N  S  C  T  T  A  L  F  W  N  W  N  K  *  L  Q  Q  P  R  Y  L  H  F  C  F  W  V  F  M  Q  W  R  *  P  Y  L  P  I  L  F  D  L  Q  I  S  T  P  F  Q  Y  C  V  L  N  L  F  F  T  R  C  *  S  F  T  A  L  S  A  Q  F  C  F  S  K  C  Y  L  *  H  Q  S  N  G  S  C  S  C  H  L  F  L  F  R  S  V  L  S  I  K  C  I  L  C  Y  Q  K  G  *  *  F  L  E  Y  C  N  E  Y  L  T  R  I  V  N  L  P  S  Y  Q  R  G  E  Q  *  T  S  *  Q  S  C  C  W  F  K  N  *  C  S  S  A  M  C  L  S  Y  T  K  P  N  *  *  W  Y  K  L  S  A  Y  L  F  D  C  F  W  G  I  C  F  L  Y  *  *  *  I  W  G  G  F  *  G  N  S  C  C  *  *  Y  T  R  R  C  S  Y  C  L  S  K  Y  Y  S  I  S  S  F  I  D  P  T  F  E  F  P  S  C  W  T  I  S  T  T  A  S  C  D  N  T  N  T  T  C  C  P  C  I  G  E  Q  L  E  Q  N  L  D  I  C  C  R  W  C  C  W  R  T  C  C  F  V  Y  S  G  G  G  C  F  L  F  V  F  Q  E  K  G  K  E  S  *  S  T  V  C  F  *  K  L  *  S  C  *  E  T  V  E  *  E  S  *  R  R  I  R  G  V  F  G  K  F  I  Q  H  S  S  I  C  *  G  L  Q  V  *  R  G  *  S  S  H  R  K  F  Q  S  Y  M  F  D  *  G  I  C  L  S  G  H  D  K  W  G  F  C  C  Y  K  E  N  E  W  *  C  I  K  G  N  *  F  V  E  Q  N  Q  S  F  *  S  Y  *  S  I  G  N  L  F  S  *  W  S  L  V  S  C  I  *  I  C  C  Q  W  T  I  K  *  L  D  M  S  P  *  W  *  A  E  V  T  K  L  G  T  K  S  T  N  F  F  *  C  G  Y  R  T  *  L  S  P  *  L  H  I  P  T  S  C  S  Q  G  F  K  R  *  *  Y  T  S  *  W  *  F  K  S  Q  D  C  *  L  W  S  S  K  V  S  R  W  T  R  R  *  V  C  I  D  K  A  H  S  W  D  P  R  L  H  G  T  *  V  F  G  E  W  A  S  L  T  E  A  G  C  L  C  I  G  S  S  V  A  G  D  S  H  R  E  R  S  F  R  F  I  *  R  F  K  H  K  L  G  *  V  V  D  P  G  A  *  *  *  *  C  K  G  E  F  E  Q  L  R  *  P  F  S  A  R  E  V  P  C  G  T  C  F  C  H  G  Q  I  D  R  *  L  P  N  E  R  S  L  T  S  P  *  Y  G  *  D  C  A  I  C  F  K  N  Y  D  S  H  T  L  M  G  N  V  I  *  H  F  S  V  T  T  *  I  A  L  D  Q  *  L  F  F  F  V  V  Y  F  V  F  V  F  S  S  F  H  I  *  H  D  L  L  C  A  I  V  I  T  L  F  M  N  L  E  E  L  L  H  H  L  S  Y  I  K  I  S  L  T  F  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42112" stop="44109"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1995</number_coding_nucleotides>
                  <number_encoded_amino_acids>665</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYITKQQSLELMFLDSNELKMNYSHLIFVFTIILAYSSVSILAQQPYFGTGTNDCSSQDTSTSAFGYLCNGVNRTCQSYLTFRSQPPFNTVSSISSLLGANPSQLSQLNSVSQNATFNTNQMVLVPVTCSCSGQFYQSNASYVIRRDDSFLNIAMNTLQGLSTCQAINAENSEQANNLVVGSRINVPLRCACPTQNQTNNGTNYLLTYLIASGEFVSFISDKFGVDFRATLAANSIPEDAPTVFPNTTLLVPLSTPPLSSQVAGPSPPPPPATTPTPPAVPVSESSSNKTWIYVVAGVVGGLVALCILGVVVFFLFFRKKEKKADPQFVSESFEAVEKPSNKKVEEESEEFLESLSSIAQSVKVYKFEEVKAATENFSPTCLIKGSVYRGTINGDFAAIKKMSGDVSKEINLLSKINHFNLISLSGICFHDGHWYLVYEYAANGPLSDWICHHNGEQKSLSWAQRVQISFDVATGLNYLHSYTSPPHVHKDLNGDNILLDGDLRAKIANFGLARSADGQEGEFALTRHIVGTQGYMAPEYLENGLVSPKLDVYALGVLLLEILTGKEVSALYEGSNTNLAELLIPVLNDDNAKESLSNFVDPSLQGKYPVELAFAMVRLIDNCLMKDPSHRPNTDEIVQSVSRIMTATHSWETSFSTSVSPHRLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="59989" PGL_stop="61175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59989" e_stop="60024"/>
            <exon e_start="60453" e_stop="60469"/>
            <exon e_start="60661" e_stop="61175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.858" acc_prob="0.852" e_score="0.611"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.588"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.611">
            <gDNA_exon_boundary e_start="59989" e_stop="60024" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.858" acc_prob="0.852">
            <gDNA_intron_boundary i_start="60025" i_stop="60452" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.588">
            <gDNA_exon_boundary e_start="60453" e_stop="60469" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60470" i_stop="60660" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="60661" e_stop="61175" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="60024"/>
              <exon start="60453" stop="60469"/>
              <exon start="60661" stop="61175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366308" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60689" stop="61028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGTGTTGTGTGCCATACAATAACTATAATGAT : TTGCTTATCTCTTAAAG : AGTATACAAGTTGAAGCAGACACAAGGGTATTAAACGCAGATCTTATTGCTGCATTTACTCTTTATCTTTTAATTATTGTGTAATGATTATAATTGTATGTGCTATGTGGTCCTACAAAACTAGTATAGAAGGTTTGTTACAACATCCGCGTGGAAGTGGAAACACTCGGAATGACTGAAAATTTTAACACGGGTAGGTTCCTGTAAGCCGGATGTGATCAAGTGTCGTCTTAAGGCCATACTTGAGCACTGCCTTGTTACCTTCTCTGAATCCATCCCCATAAGCTGCTGATGTATCTGATTCAATTTGGTGCTTAAAAAAATCACCCAGTTTCTTCTCAAAGTCGGAGCGCTTCCCTTTCTTTGATGAAGTAGATGGTGATGAAGATGATGATGAGGATGCAGAGGTAGATGCAGAAGTTGAAGTACTGCCAGAACCAGCTATAATTTCCGAGTCCAACCACATGTGAGCTAAAACTTGGCAGATACCTTCTTCCACTTCTGGACTTAAACTC</gDNA_template>
            <first_frame> I  M  C  C  V  P  Y  N  N  Y  N  D  :  L  L  I  S  *  R :   V  Y  K  L  K  Q  T  Q  G  Y  *  T  Q  I  L  L  L  H  L  L  F  I  F  *  L  L  C  N  D  Y  N  C  M  C  Y  V  V  L  Q  N  *  Y  R  R  F  V  T  T  S  A  W  K  W  K  H  S  E  *  L  K  I  L  T  R  V  G  S  C  K  P  D  V  I  K  C  R  L  K  A  I  L  E  H  C  L  V  T  F  S  E  S  I  P  I  S  C  *  C  I  *  F  N  L  V  L  K  K  I  T  Q  F  L  L  K  V  G  A  L  P  F  L  *  *  S  R  W  *  *  R  *  *  *  G  C  R  G  R  C  R  S  *  S  T  A  R  T  S  Y  N  F  R  V  Q  P  H  V  S  *  N  L  A  D  T  F  F  H  F  W  T  *  T  </first_frame>
            <second_frame>  L  C  V  V  C  H  T  I  T  I  M  I :   C  L  S  L  K   : E  Y  T  S  *  S  R  H  K  G  I  K  R  R  S  Y  C  C  I  Y  S  L  S  F  N  Y  C  V  M  I  I  I  V  C  A  M  W  S  Y  K  T  S  I  E  G  L  L  Q  H  P  R  G  S  G  N  T  R  N  D  *  K  F  *  H  G  *  V  P  V  S  R  M  *  S  S  V  V  L  R  P  Y  L  S  T  A  L  L  P  S  L  N  P  S  P  *  A  A  D  V  S  D  S  I  W  C  L  K  K  S  P  S  F  F  S  K  S  E  R  F  P  F  F  D  E  V  D  G  D  E  D  D  D  E  D  A  E  V  D  A  E  V  E  V  L  P  E  P  A  I  I  S  E  S  N  H  M  *  A  K  T  W  Q  I  P  S  S  T  S  G  L  K  L </second_frame>
            <third_frame>   Y  V  L  C  A  I  Q  *  L  *  *   : F  A  Y  L  L  K  :  S  I  Q  V  E  A  D  T  R  V  L  N  A  D  L  I  A  A  F  T  L  Y  L  L  I  I  V  *  *  L  *  L  Y  V  L  C  G  P  T  K  L  V  *  K  V  C  Y  N  I  R  V  E  V  E  T  L  G  M  T  E  N  F  N  T  G  R  F  L  *  A  G  C  D  Q  V  S  S  *  G  H  T  *  A  L  P  C  Y  L  L  *  I  H  P  H  K  L  L  M  Y  L  I  Q  F  G  A  *  K  N  H  P  V  S  S  Q  S  R  S  A  S  L  S  L  M  K  *  M  V  M  K  M  M  M  R  M  Q  R  *  M  Q  K  L  K  Y  C  Q  N  Q  L  *  F  P  S  P  T  T  C  E  L  K  L  G  R  Y  L  L  P  L  L  D  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="64463" PGL_stop="60369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64463" e_stop="64288"/>
            <exon e_start="64074" e_stop="63786"/>
            <exon e_start="63605" e_stop="63515"/>
            <exon e_start="63033" e_stop="62883"/>
            <exon e_start="62755" e_stop="62635"/>
            <exon e_start="62527" e_stop="62444"/>
            <exon e_start="62317" e_stop="62198"/>
            <exon e_start="62028" e_stop="61816"/>
            <exon e_start="61710" e_stop="61648"/>
            <exon e_start="61559" e_stop="61444"/>
            <exon e_start="61331" e_stop="61273"/>
            <exon e_start="61182" e_stop="60661"/>
            <exon e_start="60421" e_stop="60369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.594" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.772" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.969"/>
          <exon-only e_score="0.585"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64463" e_stop="64288" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.594" acc_prob="0.947">
            <gDNA_intron_boundary i_start="64287" i_stop="64075" i_length="213"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64074" e_stop="63786" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.950">
            <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63605" e_stop="63515" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63033" e_stop="62883" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62755" e_stop="62635" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.972">
            <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62527" e_stop="62444" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.775" acc_prob="0.905">
            <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62317" e_stop="62198" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62197" i_stop="62029" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62028" e_stop="61816" e_length="213"/>
          </exon>
          <intron i_serial="8" don_prob="0.772" acc_prob="0.864">
            <gDNA_intron_boundary i_start="61815" i_stop="61711" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61710" e_stop="61648" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.823">
            <gDNA_intron_boundary i_start="61647" i_stop="61560" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61559" e_stop="61444" e_length="116"/>
          </exon>
          <intron i_serial="10" don_prob="0.941" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61443" i_stop="61332" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61331" e_stop="61273" e_length="59"/>
          </exon>
          <intron i_serial="11" don_prob="0.854" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="0.969">
            <gDNA_exon_boundary e_start="61182" e_stop="60661" e_length="522"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60660" i_stop="60422" i_length="239"/>
          </intron>
          <exon e_serial="13" e_score="0.585">
            <gDNA_exon_boundary e_start="60421" e_stop="60369" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64463" stop="64288"/>
              <exon start="64074" stop="63982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64074" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64074" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64070" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64070" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64054" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62444"/>
              <exon start="62317" stop="62266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64051" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62444"/>
              <exon start="62317" stop="62232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63865" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63548" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62444"/>
              <exon start="62317" stop="62198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62699" stop="62635"/>
              <exon start="62527" stop="62444"/>
              <exon start="62317" stop="62198"/>
              <exon start="62028" stop="61816"/>
              <exon start="61710" stop="61648"/>
              <exon start="61559" stop="61444"/>
              <exon start="61331" stop="61273"/>
              <exon start="61182" stop="61027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61665" stop="61648"/>
              <exon start="61559" stop="61444"/>
              <exon start="61331" stop="61273"/>
              <exon start="61182" stop="60661"/>
              <exon start="60421" stop="60369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61090" stop="60692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTCTGGTCTTTTATGTAGACCTCAAATCAATAGTCGGTTGTCTTTCTGACGGTTGGTGGGTGGTCATTATTTTGTACTGATGAGGGCAACTTGTTTATGATGACCAATATATTATGCTGATATTACAATTTTCGAGAAGATTGTCGTTTTCCCTCAGCTGATTATCGGTTCT : GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG : GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG : AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG : GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG : TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT : ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAG : CCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAAC : GGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGT : ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAG : GTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG : GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGTAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATCTGCGTTTAATACCCTTGTGTCTGCTTCAACTTGTATACT : TATATCGGCCAAAATAGCACCAATACAAAGTCTGAACCAAAACAGGAAAGAAA</gDNA_template>
            <first_frame> F  S  L  V  F  Y  V  D  L  K  S  I  V  G  C  L  S  D  G  W  W  V  V  I  I  L  Y  *  *  G  Q  L  V  Y  D  D  Q  Y  I  M  L  I  L  Q  F  S  R  R  L  S  F  S  L  S  *  L  S  V  L :   C  L  L  L  T  S  F  G  F  I  *  P  T  S  T  C  L  G  L  R  R  S  C  C  T  P  G  T  G  N  C  V  M  G  W  L  E  K  I  F  G  G  S  T  H  R  I  S  G  G  Q  Y  H  S  G  Y  E  G  A  Q  Y  H  G  G  Y  D  G  G  Q  Y  H  S  G  H  E  G  E  Q  Y  H  G  G  Y  Q  D  S  T  T  W  D  G  P  T  T  S  V  :  D  E  S  S  D  F  D  K  E  E  I  D  R  A  I  A  L  S  L  A  E  E  D  Q  K  G  K  K  V  I   : E  S  E  P  H  L  E  E  D  E  A  L  A  K  A  L  Q  E  S  L  N  V  E  S  S  P  P  P  P  P  P  R  Y  D  Y  G  S  P  F  P  S  L  S  Y  S  F  P  Y  G  Y  R :   V  C  A  G  C  N  A  E  I  G  H  G  R  Y  L  S  C  M  G  A  V  W  H  P  E  C  F  R  C  H  G  C  N  Q  P  I  S  D  Y  E  :  F  S  M  S  D  N  R  P  Y  H  K  S  C  Y  K  E  Q  H  H  P  K  C  D  V  C  K  S  F  :  I  P  T  N  P  A  G  L  I  E  Y  R  A  H  P  F  W  L  Q  K  Y  C  P  S  H  E  T  D  G  T  P  R  C  C  S  C  E  R  M  E  :  P  V  D  A  R  Y  L  I  L  E  D  G  R  K  L  C  L  E  C  L  D  S  S  I  M  D  T  H  E  C  Q  P  L  Y  L  E  I  Q  E  F  Y  E  G  L  N  M  K  V  E  Q  Q  I  P  L  L  L  V  E  R  Q  A  L  N  E  A  M  E  G  E  K  N  :  G  H  H  H  M  P  E  T  R  G  L  C  L  S  E  E  Q  T  I  S  S  :  I  S  R  R  P  R  I  G  G  Y  R  I  L  D  M  F  T  E  P  Y  R  L  I  R  H  C  E  V  T  A  I  L  I  L  Y  G  L  P  R :   L  L  T  G  S  I  L  A  H  E  M  M  H  A  W  L  R  L  K   : G  Y  P  S  L  S  P  E  V  E  E  G  I  C  Q  V  L  A  H  M  W  L  D  S  E  I  I  A  G  S  G  S  T  S  T  S  A  S  T  S  A  S  S  S  S  S  S  S  P  S  T  S  S  K  K  G  K  R  S  D  F  E  K  K  L  G  D  F  F  K  H  Q  I  E  S  D  T  S  A  A  Y  G  D  G  F  R  E  G  N  K  A  V  L  K  Y  G  L  K  T  T  L  D  H  I  R  L  T  G  T  Y  P  C  *  N  F  Q  S  F  R  V  F  P  L  P  R  G  C  C  N  K  P  S  I  L  V  L  *  D  H  I  A  H  T  I  I  I  I  T  Q  *  L  K  D  K  E  *  M  Q  Q  *  D  L  R  L  I  P  L  C  L  L  Q  L  V  Y   : L  Y  R  P  K  *  H  Q  Y  K  V  *  T  K  T  G  K  K </first_frame>
            <second_frame>  F  L  W  S  F  M  *  T  S  N  Q  *  S  V  V  F  L  T  V  G  G  W  S  L  F  C  T  D  E  G  N  L  F  M  M  T  N  I  L  C  *  Y  Y  N  F  R  E  D  C  R  F  P  S  A  D  Y  R  F   : C  V  Y  C  L  P  V  L  D  S  Y  S  Q  L  Q  L  V  W  D  *  G  V  V  V  V  H  Q  G  Q  E  I  V  L  W  V  G  *  K  R  Y  L  E  V  P  H  T  G  S  P  V  D  N  T  I  V  G  M  R  V  R  N  I  M  G  A  T  M  E  G  N  I  I  R  G  M  K  E  N  N  I  M  E  G  I  R  T  V  L  L  G  T  D  Q  L  H  Q  W :   M  N  R  Q  I  L  I  K  K  K  L  I  V  P  L  H  F  L  *  Q  K  R  I  R  R  G  K  K  *  L  :  R  V  N  P  I  W  R  K  T  R  L  S  P  R  P  F  R  K  V  *  M  W  S  R  L  H  H  H  H  H  L  D  M  I  M  E  V  P  F  P  H  S  H  T  R  F  R  M  G  I   : G  S  V  P  V  A  M  L  K  L  D  M  E  D  I  *  V  A  W  E  L  F  G  I  Q  N  V  S  V  A  M  V  A  I  N  Q  F  P  T  M  S :   F  Q  C  Q  I  T  V  H  T  I  N  H  A  T  R  N  S  I  T  Q  N  V  M  Y  A  R  A  L :   F  Q  Q  I  R  L  V  *  L  N  I  G  L  I  L  S  G  F  R  S  I  A  H  H  M  K  L  M  G  R  L  V  V  A  V  V  R  E  W  S :   P  *  M  P  D  I  *  Y  L  K  M  V  G  S  C  V  *  S  A  W  T  L  Q  *  W  T  L  M  N  V  N  P  F  I  L  R  Y  K  N  F  M  K  V  *  I  *  K  *  S  S  K  F  L  C  F  *  L  K  D  K  H  *  M  K  Q  W  K  E  K  R  T :   V  I  I  T  C  L  R  L  E  D  S  A  C  P  R  N  R  P  L  A  V :   F  Q  G  D  H  G  L  V  V  I  G  F  *  I  C  L  Q  S  L  T  G  *  F  D  T  V  K  *  Q  L  F  *  F  C  M  V  F  L   : G  Y  *  L  V  Q  F  W  L  M  K  *  C  M  H  G  C  G  L  K  :  V  I  R  V  *  V  Q  K  W  K  K  V  S  A  K  F  *  L  T  C  G  W  T  R  K  L  *  L  V  L  A  V  L  Q  L  L  H  L  P  L  H  P  H  H  H  L  H  H  H  L  L  H  Q  R  K  G  S  A  P  T  L  R  R  N  W  V  I  F  L  S  T  K  L  N  Q  I  H  Q  Q  L  M  G  M  D  S  E  K  V  T  R  Q  C  S  S  M  A  L  R  R  H  L  I  T  S  G  L  Q  E  P  T  R  V  K  I  F  S  H  S  E  C  F  H  F  H  A  D  V  V  T  N  L  L  Y  *  F  C  R  T  T  *  H  I  Q  L  *  S  L  H  N  N  *  K  I  K  S  K  C  S  N  K  I  C  V  *  Y  P  C  V  C  F  N  L  Y  T  :  Y  I  G  Q  N  S  T  N  T  K  S  E  P  K  Q  E  R   </second_frame>
            <third_frame>   F  S  G  L  L  C  R  P  Q  I  N  S  R  L  S  F  *  R  L  V  G  G  H  Y  F  V  L  M  R  A  T  C  L  *  *  P  I  Y  Y  A  D  I  T  I  F  E  K  I  V  V  F  P  Q  L  I  I  G  S  :  V  F  I  A  Y  Q  F  W  I  H  I  A  N  F  N  L  F  G  I  E  A  *  L  L  Y  T  R  D  R  K  L  C  Y  G  L  V  R  K  D  I  W  R  F  H  T  Q  D  L  R  W  T  I  P  *  W  V  *  G  C  A  I  S  W  G  L  R  W  R  A  I  S  F  G  A  *  R  R  T  I  S  W  R  V  S  G  Q  Y  Y  L  G  R  T  N  Y  I  S   : G  *  I  V  R  F  *  *  R  R  N  *  S  C  H  C  T  F  S  S  R  R  G  S  E  G  E  K  S  N  * :   E  *  T  P  F  G  G  R  R  G  S  R  Q  G  P  S  G  K  F  E  C  G  V  V  S  T  T  T  T  T  S  I  *  L  W  K  S  L  S  L  T  L  I  L  V  S  V  W  V  *  :  G  L  C  R  L  Q  C  *  N  W  T  W  K  I  F  K  L  H  G  S  C  L  A  S  R  M  F  P  L  P  W  L  Q  S  T  N  F  R  L  *   : V  F  N  V  R  *  P  S  I  P  *  I  M  L  Q  G  T  A  S  P  K  M  *  C  M  Q  E  L   : Y  S  N  K  S  G  W  S  N  *  I  *  G  S  S  F  L  A  S  E  V  L  P  I  T  *  N  *  W  D  A  S  L  L  Q  L  *  E  N  G   : A  R  R  C  Q  I  S  D  T  *  R  W  *  E  A  V  S  R  V  L  G  L  F  N  N  G  H  S  *  M  S  T  P  L  S  *  D  T  R  I  L  *  R  F  K  Y  E  S  R  A  A  N  S  F  A  S  S  *  K  T  S  I  K  *  S  N  G  R  R  K  E   : R  S  S  S  H  A  *  D  S  R  T  L  P  V  R  G  T  D  H  *  Q   : Y  F  K  E  T  T  D  W  W  L  S  D  F  R  Y  V  Y  R  A  L  Q  V  N  S  T  L  *  S  D  S  Y  S  N  F  V  W  S  S  *  :  V  I  D  W  F  N  S  G  S  *  N  D  A  C  M  V  A  A  *  R :   L  S  E  F  K  S  R  S  G  R  R  Y  L  P  S  F  S  S  H  V  V  G  L  G  N  Y  S  W  F  W  Q  Y  F  N  F  C  I  Y  L  C  I  L  I  I  I  F  I  T  I  Y  F  I  K  E  R  E  A  L  R  L  *  E  E  T  G  *  F  F  *  A  P  N  *  I  R  Y  I  S  S  L  W  G  W  I  Q  R  R  *  Q  G  S  A  Q  V  W  P  *  D  D  T  *  S  H  P  A  Y  R  N  L  P  V  L  K  F  S  V  I  P  S  V  S  T  S  T  R  M  L  *  Q  T  F  Y  T  S  F  V  G  P  H  S  T  Y  N  Y  N  H  Y  T  I  I  K  R  *  R  V  N  A  A  I  R  S  A  F  N  T  L  V  S  A  S  T  C  I  L :   I  S  A  K  I  A  P  I  Q  S  L  N  Q  N  R  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64040" stop="63786"/>
                    <exon start="63605" stop="63515"/>
                    <exon start="63033" stop="62883"/>
                    <exon start="62755" stop="62635"/>
                    <exon start="62527" stop="62444"/>
                    <exon start="62317" stop="62198"/>
                    <exon start="62028" stop="61816"/>
                    <exon start="61710" stop="61648"/>
                    <exon start="61559" stop="61444"/>
                    <exon start="61331" stop="61273"/>
                    <exon start="61182" stop="60845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTSTCLGLRRSCCTPGTGNCVMGWLEKIFGGSTHRISGGQYHSGYEGAQYHGGYDGGQYHSGHEGEQYHGGYQDSTTWDGPTTSVDESSDFDKEEIDRAIALSLAEEDQKGKKVIESEPHLEEDEALAKALQESLNVESSPPPPPPRYDYGSPFPSLSYSFPYGYRVCAGCNAEIGHGRYLSCMGAVWHPECFRCHGCNQPISDYEFSMSDNRPYHKSCYKEQHHPKCDVCKSFIPTNPAGLIEYRAHPFWLQKYCPSHETDGTPRCCSCERMEPVDARYLILEDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHMPETRGLCLSEEQTISSISRRPRIGGYRILDMFTEPYRLIRHCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSASSSSSSSPSTSSKKGKRSDFEKKLGDFFKHQIESDTSAAYGDGFREGNKAVLKYGLKTTLDHIRLTGTYPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61582" e_stop="61273"/>
            <exon e_start="61182" e_stop="60692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61582" e_stop="61273" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="61182" e_stop="60692" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61582" stop="61273"/>
              <exon start="61182" stop="60867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61581" stop="61273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61548" stop="61273"/>
              <exon start="61182" stop="60868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61548" stop="61273"/>
              <exon start="61182" stop="60894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61090" stop="60692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG : GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGTAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATCTGCGTTTA</gDNA_template>
            <first_frame> L  D  S  Y  K  *  F  R  F  Q  G  D  H  G  L  V  V  I  G  F  *  I  C  L  Q  S  L  T  G  *  F  D  T  V  K  *  Q  L  F  *  F  C  M  V  F  L  G  N  K  C  H  T  S  F  M  L  N  R  M  V  *  K  S  Y  L  I  R  Y  S  Y  F  T  L  S  E  D  K  F  T  H  D  F  F  R  L  L  T  G  S  I  L  A  H  E  M  M  H  A  W  L  R  L  K   : G  Y  P  S  L  S  P  E  V  E  E  G  I  C  Q  V  L  A  H  M  W  L  D  S  E  I  I  A  G  S  G  S  T  S  T  S  A  S  T  S  A  S  S  S  S  S  S  S  P  S  T  S  S  K  K  G  K  R  S  D  F  E  K  K  L  G  D  F  F  K  H  Q  I  E  S  D  T  S  A  A  Y  G  D  G  F  R  E  G  N  K  A  V  L  K  Y  G  L  K  T  T  L  D  H  I  R  L  T  G  T  Y  P  C  *  N  F  Q  S  F  R  V  F  P  L  P  R  G  C  C  N  K  P  S  I  L  V  L  *  D  H  I  A  H  T  I  I  I  I  T  Q  *  L  K  D  K  E  *  M  Q  Q  *  D  L  R  L </first_frame>
            <second_frame>  L  I  H  T  N  N  S  D  F  K  E  T  T  D  W  W  L  S  D  F  R  Y  V  Y  R  A  L  Q  V  N  S  T  L  *  S  D  S  Y  S  N  F  V  W  S  S  *  V  I  N  V  T  L  L  S  C  L  I  E  W  S  K  N  H  T  S  *  D  I  L  T  S  L  Y  L  K  T  N  L  L  M  T  F  S  G  Y  *  L  V  Q  F  W  L  M  K  *  C  M  H  G  C  G  L  K  :  V  I  R  V  *  V  Q  K  W  K  K  V  S  A  K  F  *  L  T  C  G  W  T  R  K  L  *  L  V  L  A  V  L  Q  L  L  H  L  P  L  H  P  H  H  H  L  H  H  H  L  L  H  Q  R  K  G  S  A  P  T  L  R  R  N  W  V  I  F  L  S  T  K  L  N  Q  I  H  Q  Q  L  M  G  M  D  S  E  K  V  T  R  Q  C  S  S  M  A  L  R  R  H  L  I  T  S  G  L  Q  E  P  T  R  V  K  I  F  S  H  S  E  C  F  H  F  H  A  D  V  V  T  N  L  L  Y  *  F  C  R  T  T  *  H  I  Q  L  *  S  L  H  N  N  *  K  I  K  S  K  C  S  N  K  I  C  V   </second_frame>
            <third_frame>   *  F  I  Q  I  I  Q  I  S  R  R  P  R  I  G  G  Y  R  I  L  D  M  F  T  E  P  Y  R  L  I  R  H  C  E  V  T  A  I  L  I  L  Y  G  L  P  R  *  *  M  S  H  F  F  H  A  *  *  N  G  L  K  I  I  P  H  K  I  F  L  L  H  S  I  *  R  Q  I  Y  S  *  L  F  Q  V  I  D  W  F  N  S  G  S  *  N  D  A  C  M  V  A  A  *  R :   L  S  E  F  K  S  R  S  G  R  R  Y  L  P  S  F  S  S  H  V  V  G  L  G  N  Y  S  W  F  W  Q  Y  F  N  F  C  I  Y  L  C  I  L  I  I  I  F  I  T  I  Y  F  I  K  E  R  E  A  L  R  L  *  E  E  T  G  *  F  F  *  A  P  N  *  I  R  Y  I  S  S  L  W  G  W  I  Q  R  R  *  Q  G  S  A  Q  V  W  P  *  D  D  T  *  S  H  P  A  Y  R  N  L  P  V  L  K  F  S  V  I  P  S  V  S  T  S  T  R  M  L  *  Q  T  F  Y  T  S  F  V  G  P  H  S  T  Y  N  Y  N  H  Y  T  I  I  K  R  *  R  V  N  A  A  I  R  S  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61399" stop="61273"/>
                    <exon start="61182" stop="60845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYLIRYSYFTLSEDKFTHDFFRLLTGSILAHEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSASSSSSSSPSTSSKKGKRSDFEKKLGDFFKHQIESDTSAAYGDGFREGNKAVLKYGLKTTLDHIRLTGTYPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="82959" PGL_stop="84038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82959" e_stop="83285"/>
            <exon e_start="83519" e_stop="84038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.985"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="82959" e_stop="83285" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="83286" i_stop="83518" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="83519" e_stop="84038" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82959" stop="83285"/>
              <exon start="83519" stop="84038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAG : TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATTGGGATATGCAAAAA</gDNA_template>
            <first_frame> *  K  L  V  E  *  K  K  R  T  A  T  S  S  L  F  S  S  L  N  Y  V  S  L  S  H  T  H  R  E  R  Q  R  K  P  E  Y  I  C  Q  S  S  S  S  Y  F  K  K  K  Y  V  *  L  N  Y  I  S  R  R  R  L  Q  H  R  V  E  D  E  K  *  K  R  N  D  S  R  Q  Q  R  N  R  E  R  H  S  Q  Q  L  C  L  S  N  P  T  K  R  K  R  *  L  R  N  L  Q  K  N  S  Y  E  :  *  K  K  R  D  D  E  E  E  D  N  A  A  M  G  I  A  T  Q  P  I  T  L  R  P  C  H  K  Y  P  V  I  Q  Q  V  V  E  N  L  N  S  M  S  Q  D  Y  H  H  H  S  L  F  S  F  P  N  G  F  E  R  S  Q  A  E  Q  Q  Q  H  Q  H  Q  Q  A  Q  Q  I  R  R  D  K  L  R  V  Q  G  F  E  P  F  E  D  E  T  S  G  L  P  T  V  Y  E  T  A  G  M  L  S  E  M  F  N  F  P  P  G  N  A  A  T  N  A  A  E  L  L  E  T  Q  F  N  P  N  F  R  Q  P  N  P  R  I  H  A  A  A  A  M  G  N  E  W  F  G  N  H  R  Q  G  M  V  V  G  G  G  A  S  S  Q  P  L  G  Y  A  K  </first_frame>
            <second_frame>  K  N  *  L  S  E  K  R  E  Q  R  P  L  L  Y  F  L  P  L  I  M  C  L  S  L  T  H  T  E  R  D  K  E  N  Q  N  T  Y  V  K  V  H  L  L  I  L  R  K  N  M  F  S  *  I  I  F  P  E  G  D  C  S  I  E  *  R  T  R  N  K  K  E  T  T  A  D  S  R  E  I  E  R  D  T  H  N  S  F  A  F  Q  I  P  R  R  E  N  D  S  *  E  T  C  K  K  T  L  M  S :   R  R  K  E  M  M  K  K  K  T  T  L  P  W  E  *  Q  H  N  Q  L  H  F  V  L  V  T  N  I  Q  *  F  N  K  L  *  K  I  S  I  L  C  P  K  I  I  I  T  T  V  S  S  V  S  L  M  G  S  R  D  H  K  P  N  S  S  S  T  S  T  S  K  L  N  R  S  V  E  I  N  C  E  C  K  D  S  N  R  L  K  M  K  Q  V  A  Y  Q  Q  F  M  R  L  L  E  C  Y  L  R  C  L  I  S  L  L  E  T  P  Q  P  T  Q  R  N  Y  *  K  L  N  S  I  R  I  L  D  S  R  I  H  G  F  M  L  L  L  P  W  G  T  S  G  S  A  T  T  D  K  V  W  *  W  V  E  V  Q  V  V  N  H  W  D  M  Q  K </second_frame>
            <third_frame>   K  I  S  *  V  K  K  E  N  S  D  L  F  S  I  F  F  P  *  L  C  V  S  L  S  H  T  Q  R  E  T  K  K  T  R  I  H  M  S  K  F  I  F  L  F  *  E  K  I  C  L  A  E  L  Y  F  Q  K  A  I  A  A  *  S  R  G  R  E  I  K  K  K  R  Q  Q  T  A  E  K  *  R  E  T  L  T  T  A  L  P  F  K  S  H  E  E  K  T  I  A  E  K  P  A  K  K  L  L  *   : V  E  E  K  R  *  *  R  R  R  Q  R  C  H  G  N  S  N  T  T  N  Y  T  S  S  L  S  Q  I  S  S  N  S  T  S  C  R  K  S  Q  F  Y  V  P  R  L  S  S  P  Q  S  L  Q  F  P  *  W  V  R  E  I  T  S  R  T  A  A  A  P  A  P  A  S  S  T  D  P  S  R  *  I  A  S  A  R  I  R  T  V  *  R  *  N  K  W  P  T  N  S  L  *  D  C  W  N  V  I  *  D  V  *  F  P  S  W  K  R  R  N  Q  R  S  G  I  I  R  N  S  I  Q  S  E  F  *  T  A  E  S  T  D  S  C  C  C  C  H  G  E  R  V  V  R  Q  P  P  T  R  Y  G  S  G  W  R  C  K  *  S  T  I  G  I  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83522" stop="84037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRDDEEEDNAAMGIATQPITLRPCHKYPVIQQVVENLNSMSQDYHHHSLFSFPNGFERSQAEQQQHQHQQAQQIRRDKLRVQGFEPFEDETSGLPTVYETAGMLSEMFNFPPGNAATNAAELLETQFNPNFRQPNPRIHAAAAMGNEWFGNHRQGMVVGGGASSQPLGYAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83004" e_stop="83266"/>
            <exon e_start="83428" e_stop="83459"/>
            <exon e_start="83519" e_stop="83856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.565" acc_prob="0.000" e_score="0.894"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.531"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="83004" e_stop="83266" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.565" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83267" i_stop="83427" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.531">
            <gDNA_exon_boundary e_start="83428" e_stop="83459" e_length="32"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="83460" i_stop="83518" i_length="59"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="83519" e_stop="83856" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83004" stop="83266"/>
              <exon start="83428" stop="83459"/>
              <exon start="83519" stop="83856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCT : CTTTTTCAATCTCCTGACAATAATTGTATCCC : TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</gDNA_template>
            <first_frame> F  S  S  L  N  Y  V  S  L  S  H  T  H  R  E  R  Q  R  K  P  E  Y  I  C  Q  S  S  S  S  Y  F  K  K  K  Y  V  *  L  N  Y  I  S  R  R  R  L  Q  H  R  V  E  D  E  K  *  K  R  N  D  S  R  Q  Q  R  N  R  E  R  H  S  Q  Q  L  C  L  S  N  P  T  K  R  K  R  *  L  R  N  L :   F  F  N  L  L  T  I  I  V  S   : L  E  E  K  R  *  *  R  R  R  Q  R  C  H  G  N  S  N  T  T  N  Y  T  S  S  L  S  Q  I  S  S  N  S  T  S  C  R  K  S  Q  F  Y  V  P  R  L  S  S  P  Q  S  L  Q  F  P  *  W  V  R  E  I  T  S  R  T  A  A  A  P  A  P  A  S  S  T  D  P  S  R  *  I  A  S  A  R  I  R  T  V  *  R  *  N  K  W  P  T  N  S  L  *  D  C  W  N  V  I  *  D  V  *  F  P </first_frame>
            <second_frame>  F  L  P  L  I  M  C  L  S  L  T  H  T  E  R  D  K  E  N  Q  N  T  Y  V  K  V  H  L  L  I  L  R  K  N  M  F  S  *  I  I  F  P  E  G  D  C  S  I  E  *  R  T  R  N  K  K  E  T  T  A  D  S  R  E  I  E  R  D  T  H  N  S  F  A  F  Q  I  P  R  R  E  N  D  S  *  E  T   : S  F  S  I  S  *  Q  *  L  Y  P  :  *  K  K  R  D  D  E  E  E  D  N  A  A  M  G  I  A  T  Q  P  I  T  L  R  P  C  H  K  Y  P  V  I  Q  Q  V  V  E  N  L  N  S  M  S  Q  D  Y  H  H  H  S  L  F  S  F  P  N  G  F  E  R  S  Q  A  E  Q  Q  Q  H  Q  H  Q  Q  A  Q  Q  I  R  R  D  K  L  R  V  Q  G  F  E  P  F  E  D  E  T  S  G  L  P  T  V  Y  E  T  A  G  M  L  S  E  M  F  N  F   </second_frame>
            <third_frame>   F  F  P  *  L  C  V  S  L  S  H  T  Q  R  E  T  K  K  T  R  I  H  M  S  K  F  I  F  L  F  *  E  K  I  C  L  A  E  L  Y  F  Q  K  A  I  A  A  *  S  R  G  R  E  I  K  K  K  R  Q  Q  T  A  E  K  *  R  E  T  L  T  T  A  L  P  F  K  S  H  E  E  K  T  I  A  E  K  P  :  L  F  Q  S  P  D  N  N  C  I  P :   R  R  K  E  M  M  K  K  K  T  T  L  P  W  E  *  Q  H  N  Q  L  H  F  V  L  V  T  N  I  Q  *  F  N  K  L  *  K  I  S  I  L  C  P  K  I  I  I  T  T  V  S  S  V  S  L  M  G  S  R  D  H  K  P  N  S  S  S  T  S  T  S  K  L  N  R  S  V  E  I  N  C  E  C  K  D  S  N  R  L  K  M  K  Q  V  A  Y  Q  Q  F  M  R  L  L  E  C  Y  L  R  C  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83522" stop="83854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRDDEEEDNAAMGIATQPITLRPCHKYPVIQQVVENLNSMSQDYHHHSLFSFPNGFERSQAEQQQHQHQQAQQIRRDKLRVQGFEPFEDETSGLPTVYETAGMLSEMFNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="84580" PGL_stop="85523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84580" e_stop="84742"/>
            <exon e_start="85171" e_stop="85523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84580" e_stop="84742" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85171" e_stop="85523" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84580" stop="84742"/>
              <exon start="85171" stop="85523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84602" stop="84742"/>
              <exon start="85171" stop="85194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84711" stop="84742"/>
              <exon start="85171" stop="85333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAG : GTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAG</gDNA_template>
            <first_frame> W  K  R  *  I  E  E  E  *  Q  Q  S  S  S  Q  *  P  *  W  W  R  *  Q  *  S  F  F  K  R  C  S  Y  F  V  R  C  *  *  N  *  T  S  E  K  E  G  Q  T  F  I  Y  A  *  *   : G  R  *  E  V  Q  S  L  L  *  T  N  A  D  G  C  E  F  V  *  F  S  D  G  F  R  G  S  S  S  L  Y  S  T  S  T  E  G  N  V  E  T  F  Q  V  F  K  G  C  N  R  S  T  V  E  A  E  L  *  V  I  R  R  E  R  C  R  N  F  G  I  D  *  R  R  N  S  E  A  *  D  A  *  T  K  F  E  A  T  K  G  V  S  P  N  G  N  D  G  T  R  G  L  E  T  T  K  R  L  T  G  T  F  C  Q  Y  F  K </first_frame>
            <second_frame>  G  R  G  K  L  K  K  N  N  N  K  A  A  A  N  N  P  S  G  G  A  N  N  E  A  S  S  K  D  V  P  T  L  S  A  A  D  R  I  E  H  Q  R  R  K  V  K  L  L  S  M  L  D  E  :  V  D  R  R  Y  N  H  Y  C  E  Q  M  Q  M  V  V  N  S  F  D  L  V  M  G  F  G  A  A  V  P  Y  T  A  L  A  Q  K  A  M  S  R  H  F  R  C  L  K  D  A  I  G  A  Q  L  K  Q  S  C  E  L  L  G  E  K  D  A  G  T  S  G  L  T  K  G  E  T  P  R  L  K  M  L  E  Q  S  L  R  Q  Q  R  A  F  H  Q  M  G  M  M  E  Q  E  A  W  R  P  Q  R  G  L  P  E  R  S  V  N  I  L   </second_frame>
            <third_frame>   E  E  V  N  *  R  R  I  T  T  K  Q  Q  P  I  T  L  V  V  A  L  T  M  K  L  L  Q  K  M  F  L  L  C  P  L  L  I  E  L  N  I  R  E  G  R  S  N  F  Y  L  C  L  M  R :   *  I  G  G  T  I  I  T  V  N  K  C  R  W  L  *  I  R  L  I  *  *  W  V  S  G  Q  Q  F  L  I  Q  H  *  H  R  R  Q  C  R  D  I  S  G  V  *  R  M  Q  *  E  H  S  *  S  R  V  V  S  Y  *  E  R  K  M  Q  E  L  R  D  *  L  K  E  K  L  R  G  L  R  C  L  N  K  V  *  G  N  K  G  R  F  T  K  W  E  *  W  N  K  R  L  G  D  H  K  E  A  Y  R  N  V  L  S  I  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84581" stop="84742"/>
                    <exon start="85171" stop="85521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRGKLKKNNNKAAANNPSGGANNEASSKDVPTLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIGAQLKQSCELLGEKDAGTSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="86904" PGL_stop="88219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86904" e_stop="86941"/>
            <exon e_start="87987" e_stop="88219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86904" e_stop="86941" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86942" i_stop="87986" i_length="1045"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87987" e_stop="88219" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86904" stop="86941"/>
              <exon start="87987" stop="88219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAG : GTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACT</gDNA_template>
            <first_frame> I  C  W  Q  D  R  L  V  S  P  E  I  R :   Y  Q  I  G  S  L  M  R  G  F  G  C  G  N  P  W  *  K  I  C  I  N  K  K  P  K  M  K  M  R  I  A  K  A  K  T  V  A  I  I  *  L  H  K  H  Q  R  L  I  A  *  L  T  L  H  L  L  I  *  Q  R  Q  Q  Q  Q  Q  Q  Q  Q  Q  P  L  Q  L  R  Q  H  </first_frame>
            <second_frame>  S  V  G  K  T  D  W  S  L  Q  K  S   : G  I  K  L  V  H  *  C  E  G  S  V  V  E  T  H  G  R  R  Y  V  S  T  R  S  Q  R  *  R  *  E  *  P  K  P  K  Q  W  Q  *  Y  N  C  T  N  T  N  A  *  *  P  D  *  L  F  I  Y  *  Y  N  N  G  N  S  S  S  N  N  N  N  S  P  Y  N  Y  D  S  T </second_frame>
            <third_frame>   L  L  A  R  Q  T  G  L  S  R  N  Q  :  V  S  N  W  F  I  N  A  R  V  R  L  W  K  P  M  V  E  D  M  Y  Q  Q  E  A  K  D  E  D  E  N  S  Q  S  Q  N  S  G  N  N  I  I  A  Q  T  P  T  P  N  S  L  T  N  S  S  S  T  N  I  T  T  A  T  A  A  A  T  T  T  T  A  P  T  T  T  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86906" stop="86941"/>
                    <exon start="87987" stop="88217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKDEDENSQSQNSGNNIIAQTPTPNSLTNSSSTNITTATAAATTTTAPTTTTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="95054" PGL_stop="94661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95054" e_stop="94661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="95054" e_stop="94661" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95054" stop="94661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCAAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</gDNA_template>
            <first_frame> S  F  L  K  S  G  D  N  C  P  N  L  Q  R  A  F  E  V  W  W  R  R  T  F  V  R  P  Y  A  E  T  G  S  T  R  P  L  D  H  V  T  T  P  K  V  T  E  H  *  T  F  M  V  S  F  K  R  K  L  L  K  I  S  V  K  L  N  *  R  R  L  L  L  Y  A  M  K  K  A  R  G  L  C  Q  I  K  D  K  L  L  I  Y  I  R  C  L  T  D  S  L  C  E  S  C  K  F  R  V  S  F  E  L  S  N  L  V  C  *  *  F  V  R  G  M  *  Y  K  L  V  V  L  </first_frame>
            <second_frame>  V  S  S  S  Q  V  I  I  V  Q  I  F  R  E  H  L  K  S  G  G  V  V  H  L  S  D  L  M  Q  R  Q  E  V  P  A  H  *  T  M  L  R  L  Q  R  *  Q  N  I  R  R  L  W  Y  H  L  K  G  N  C  *  R  S  V  L  S  *  I  E  G  D  F  C  C  M  Q  *  R  K  L  G  G  S  V  K  S  R  I  N  Y  S  S  I  *  G  V  *  L  I  P  C  V  N  H  V  N  L  E  Y  H  L  N  C  P  I  W  C  V  S  D  L  *  E  V  C  N  T  S  W  L  C  * </second_frame>
            <third_frame>   F  P  Q  V  R  *  *  L  S  K  S  S  E  S  I  *  S  L  V  A  S  Y  I  C  Q  T  L  C  R  D  R  K  Y  P  P  I  R  P  C  Y  D  S  K  G  N  R  T  L  D  V  Y  G  I  I  *  K  E  I  V  E  D  Q  C  *  V  E  L  K  E  T  S  V  V  C  N  E  E  S  S  G  A  L  S  N  Q  G  *  I  T  H  L  Y  K  V  S  N  *  F  L  V  *  I  M  *  I  *  S  I  I  *  I  V  Q  F  G  V  L  V  I  C  K  R  Y  V  I  Q  V  G  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="98742" PGL_stop="98189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98742" e_stop="98189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98742" e_stop="98189" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98742" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98617" stop="98411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</gDNA_template>
            <first_frame> N  F  S  I  H  I  G  G  E  L  I  I  P  L  C  *  I  S  D  L  V  V  P  F  M  L  D  I  K  A  F  I  Q  S  F  S  M  P  L  P  W  T  F  K  L  K  D  L  G  F  S  R  K  S  Q  I  A  L  S  V  C  S  *  V  F  V  V  F  S  I  S  R  I  W  V  F  Q  E  S  L  L  S  C  H  F  T  P  L  G  V  V  S  F  N  S  S  F  F  V  S  *  Q  L  Y  C  *  R  F  D  L  L  F  C  L  L  S  F  W  R  T  K  E  R  N  N  L  C  F  F  Y  C  *  V  L  E  *  *  L  S  F  I  R  G  E  K  I  S  S  L  M  F  C  P  N  *  *  I  F  I  L  M  I  K  E  F  L  S  S  V  *  S  T  *  F  Q  F  H  H  P  L  S  K  K  N   </first_frame>
            <second_frame>  I  F  Q  F  I  *  E  G  S  S  S  F  H  S  V  K  S  L  I  W  W  F  P  S  C  L  T  S  K  L  S  F  N  H  F  Q  C  L  F  L  G  L  L  N  *  K  I  W  G  F  Q  E  N  L  R  *  L  S  L  F  V  V  E  Y  L  L  F  S  L  F  Q  E  F  G  C  F  K  N  P  F  C  P  A  I  L  H  L  *  E  W  *  V  S  T  L  L  S  L  F  L  D  N  Y  T  V  K  G  L  I  F  C  F  V  C  C  P  F  G  E  R  K  K  G  T  I  C  V  F  F  I  V  K  C  W  S  S  S  Y  L  L  S  E  G  K  R  L  A  L  *  C  F  V  L  I  S  R  Y  S  F  L  *  S  K  S  S  L  V  L  C  S  Q  P  D  F  N  F  I  I  P  *  V  K  K  M  </second_frame>
            <third_frame>   F  F  N  S  Y  R  R  G  A  H  H  S  T  L  L  N  L  *  F  G  G  S  L  H  A  *  H  Q  S  F  H  S  I  I  F  N  A  S  S  L  D  F  *  I  K  R  F  G  V  F  K  K  I  S  D  S  S  L  C  L  *  L  S  I  C  C  F  L  Y  F  K  N  L  G  V  S  R  I  P  F  V  L  P  F  Y  T  F  R  S  G  E  F  Q  L  F  F  L  C  F  L  T  T  I  L  L  K  V  *  S  F  V  L  F  A  V  L  L  E  N  E  R  K  E  Q  F  V  F  F  L  L  L  S  V  G  V  V  A  I  F  Y  Q  R  G  K  D  *  L  F  D  V  L  S  *  L  V  D  I  H  S  Y  D  Q  R  V  P  *  F  C  V  V  N  L  I  S  I  S  S  S  L  K  *  K  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="100679" PGL_stop="101142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100679" e_stop="101142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="100679" e_stop="101142" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="101142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</gDNA_template>
            <first_frame> K  I  Y  V  P  L  *  Y  *  N  S  L  H  R  C  K  I  Y  G  N  G  T  S  F  K  N  L  I  I  Y  I  F  P  D  I  Q  F  L  I  K  R  F  *  I  *  I  L  F  Y  F  I  F  F  R  I  T  L  F  L  L  G  S  M  E  I  L  R  R  E  F  *  M  K  N  K  R  N  K  *  R  R  P  N  Y  E  Y  D  L  F  T  Q  F  K  N  L  E  A  L  Y  I  S  F  Y  F  *  D  K  Y  M  L  L  F  *  L  N  I  F  D  K  *  S  K  H  K  G  I  R  E  K  F  D  N  *  S  S  E  K  C  K  L  W  S  N  T  C  *  Q  K  N  *  Q  E  S  W   </first_frame>
            <second_frame>  K  S  M  C  P  S  N  I  K  T  A  F  I  V  V  K  Y  M  G  M  G  L  R  L  R  I  *  S  Y  I  Y  S  R  T  Y  N  F  *  L  R  D  F  E  F  K  F  Y  F  I  L  F  F  S  V  L  H  Y  F  Y  *  G  A  W  K  F  C  G  A  N  S  K  *  K  T  K  E  T  N  R  E  D  L  T  M  S  M  I  C  L  P  N  L  K  I  S  R  L  F  I  F  H  F  I  F  R  T  N  I  C  C  C  S  N  *  I  Y  S  I  N  K  V  N  I  K  E  L  E  K  N  L  I  I  E  V  V  K  N  V  N  Y  G  V  I  P  V  N  R  K  I  N  R  K  A  G  </second_frame>
            <third_frame>   N  L  C  A  P  L  I  L  K  Q  P  S  S  L  *  N  I  W  E  W  D  F  V  *  E  S  D  H  I  Y  I  P  G  H  T  I  F  N  *  E  I  L  N  L  N  F  I  L  F  Y  F  F  P  Y  Y  I  I  F  T  R  E  H  G  N  F  A  A  R  I  L  N  E  K  Q  K  K  Q  I  E  K  T  *  L  *  V  *  S  V  Y  P  I  *  K  S  R  G  S  L  Y  F  I  L  F  L  G  Q  I  Y  V  V  V  L  I  E  Y  I  R  *  I  K  *  T  *  R  N  *  R  K  I  *  *  L  K  *  *  K  M  *  I  M  E  *  Y  L  L  T  E  K  L  T  G  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="103722" PGL_stop="103192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103722" e_stop="103673"/>
            <exon e_start="103424" e_stop="103192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.467" e_score="0.980"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="103722" e_stop="103673" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.467">
            <gDNA_intron_boundary i_start="103672" i_stop="103425" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="103424" e_stop="103192" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103722" stop="103673"/>
              <exon start="103424" stop="103192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCATGGATCATCAGCTTGCACATGTTGGTTTTTATGCAAGGCGAGAT : ATACTTGCAGGTGAAGAACTGACCTATAACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCCGAGGACTGGTGTGTTTGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</gDNA_template>
            <first_frame> K  A  W  I  I  S  L  H  M  L  V  F  M  Q  G  E  I :   Y  L  Q  V  K  N  *  P  I  T  I  D  T  N  Y  C  P  E  K  G  L  H  A  C  V  D  P  L  I  A  G  D  V  F  T  K  S  S  T  *  *  I  V  H  S  E  V  Y  E  F  R  S  V  E  I  R  N  P  E  D  W  C  V  C  R  K  Q  K  V  C  N  C  P  *  F  I  V  </first_frame>
            <second_frame>  K  H  G  S  S  A  C  T  C  W  F  L  C  K  A  R   : Y  T  C  R  *  R  T  D  L  *  L  *  I  Q  T  I  A  R  R  R  V  S  M  P  V  W  I  L  *  L  Q  G  T  S  L  L  N  P  L  L  N  R  L  C  I  Q  R  F  M  N  S  D  L  *  R  F  G  I  P  R  T  G  V  F  A  G  S  K  K  F  V  I  V  L  S  L  *  F </second_frame>
            <third_frame>   S  M  D  H  Q  L  A  H  V  G  F  Y  A  R  R  D  :  I  L  A  G  E  E  L  T  Y  N  Y  R  Y  K  L  L  P  G  E  G  S  P  C  L  C  G  S  S  N  C  R  G  R  L  Y  *  I  L  Y  L  I  D  C  A  F  R  G  L  *  I  Q  I  C  R  D  S  E  S  R  G  L  V  C  L  Q  E  A  K  S  L  *  L  S  L  V  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="107372" PGL_stop="106650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107372" e_stop="106650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="107372" e_stop="106650" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107372" stop="106650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107242" stop="106676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</gDNA_template>
            <first_frame> A  H  T  G  W  T  A  T  K  R  K  P  N  G  F  S  G  V  M  L  V  L  S  V  W  I  L  L  L  I  R  K  F  W  K  L  M  C  R  K  G  T  I  H  S  L  L  K  I  A  C  F  F  S  V  F  R  V  L  A  I  L  G  T  Q  R  S  Y  G  P  T  C  S  P  H  I  L  P  V  L  D  G  L  I  L  L  K  R  I  I  F  L  Q  V  R  L  H  Q  R  S  L  I  *  A  T  P  C  R  H  R  I  S  I  Q  R  T  S  L  V  S  E  N  S  S  A  D  F  V  A  *  N  L  T  C  Y  L  I  *  A  A  I  I  R  L  L  T  W  V  L  I  L  L  A  L  I  S  P  R  R  A  S  V  Y  M  L  I  N  *  S  Q  E  D  L  A  V  Q  N  S  R  R  V  S  D  L  *  H  I  G  L  G  T  E  M  L  R  I  *  R  D  A  S  C  H  R  T  P  L  L  V  E  N  L  R  F  N  L  V  Q  P  R  Q  L  V  *  V  D  W  E  I  P  T  A  *  I  L  Q  R  Y  C  L  L </first_frame>
            <second_frame>  H  T  L  D  G  Q  P  Q  K  G  S  P  M  A  F  Q  G  L  C  L  C  Y  L  S  G  F  F  Y  *  *  E  S  F  G  N  S  C  A  G  K  A  P  F  T  V  C  *  K  L  H  A  F  S  V  Y  S  V  Y  *  Q  F  W  E  L  R  G  V  M  V  P  R  A  H  R  T  S  F  Q  F  *  M  V  S  Y  C  S  R  E  S  F  S  C  K  *  G  C  I  R  E  A  *  Y  R  Q  L  L  V  D  T  E  F  Q  F  R  E  P  V  W  F  P  K  I  H  L  Q  I  L  W  P  E  I  *  L  A  T  *  S  R  P  P  S  S  G  C  S  H  G  S  *  S  C  W  L  S  Y  L  Q  E  G  H  P  F  I  C  S  *  I  E  V  R  K  T  *  P  S  K  I  Q  E  G  S  R  I  C  S  I  *  D  *  E  Q  K  C  S  E  Y  E  E  T  H  P  V  I  E  L  H  Y  *  W  K  T  F  D  S  T  *  C  N  R  G  S  W  S  R  *  T  G  R  S  P  L  L  R  Y  C  K  D  I  V  C   </second_frame>
            <third_frame>   T  H  W  M  D  S  H  K  K  E  A  Q  W  L  F  R  G  Y  A  C  A  I  C  L  D  S  F  T  N  K  K  V  L  E  T  H  V  Q  E  R  H  H  S  Q  F  V  E  N  C  M  L  F  Q  C  I  P  C  T  S  N  F  G  N  S  E  E  L  W  S  H  V  L  T  A  H  P  S  S  F  R  W  S  H  T  A  Q  E  N  H  F  P  A  S  E  V  A  S  E  K  P  D  I  G  N  S  L  S  T  Q  N  F  N  S  E  N  Q  S  G  F  R  K  F  I  C  R  F  C  G  L  K  F  D  L  L  P  D  L  G  R  H  H  Q  A  A  H  M  G  P  N  P  V  G  S  H  I  S  K  K  G  I  R  L  Y  A  H  K  L  K  S  G  R  L  S  R  P  K  F  K  K  G  L  G  S  V  A  Y  R  I  R  N  R  N  A  Q  N  M  K  R  R  I  L  S  S  N  S  I  I  S  G  K  P  S  I  Q  P  S  A  T  E  A  A  G  L  G  R  L  G  D  P  H  C  L  D  I  A  K  I  L  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107370" stop="106651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THWMDSHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHSQFVENCMLFQCIPCTSNFGNSEELWSHVLTAHPSSFRWSHTAQENHFPASEVASEKPDIGNSLSTQNFNSENQSGFRKFICRFCGLKFDLLPDLGRHHQAAHMGPNPVGSHISKKGIRLYAHKLKSGRLSRPKFKKGLGSVAYRIRNRNAQNMKRRILSSNSIISGKPSIQPSATEAAGLGRLGDPHCLDIAKILFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 119 chains have been computed
$ 
$ memory statistics:
$ 251544 bytes spliced alignments in total
$ 87 spliced alignments have been stored
$ 2891 bytes was the average size of a spliced alignment
$ 24808 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1550 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 130 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:02:51
-->
