<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:04:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG645-F" ref_strand="+" ref_description="TG645-F">
      <seq>aatgatgcaattttcttaatgctacccacatccctaaaagctaaaaaaacttttctttgatttttcttgatatttacaatgctaacatattcttgaaaaattcgatttctttaattcctcaacatatgaacaatgtagtaacttcaaaaagaaaccaatttcttgatttttttcttaaatcaagaattccaagttcaggaatttaccaagataagagtagcgaatcttggcagtaggtattatcgccgtcactggaaagttaagcgctggtattgaatagttttgatcgtacatcgtcaccggagtgttaagggccggtagcgtacaacttcagcagagtagcgtatgaagttccccggtcttctgtaatttgaaataaggagaagatagtacgtgtatttatacacgcggaaaaatctcaactctttttaaaatataaatcaactttttttaataatacattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="82548" stop="83613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82848" g_stop="83313" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="TG645-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="TG645-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82848" e_stop="83313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGCAATTTTCTTAATGCTACCCACATCCCTAAAAGCTAAAAAAACTTTTCTTTGATTTTTCTTGATATTTACAATGCTAACATATTCTTGAAAAATTCGATTTCTTTAATTCCTCAACATATGAACAATGTAGTAACTTCAAAAAGAAACCAATTTCTTGATTTTTTTCTTAAATCAAGAATTCCAAGTTCAGGAATTTACCAAGATAAGAGTAGCGAATCTTGGCAGTAGGTATTATCGCCGTCACTGGAAAGTTAAGCGCTGGTATTGAATAGTTTTGATCGTACATCGTCACCGGAGTGTTAAGGGCCGGTAGCGTACAACTTCAGCAGAGTAGCGTATGAAGTTCCCCGGTCTTCTGTAATTTGAAATAAGGAGAAGATAGTACGTGTATTTATACACGCGGAAAAATCTCAACTCTTTTTAAAATATAAATCAACTTTTTTTAATAATACATTATT</genome_strand>
        <mrna_strand>AATGATGCAATTTTCTTAATGCTACCCACATCCCTAAAAGCTAAAAAAACTTTTCTTTGATTTTTCTTGATATTTACAATGCTAACATATTCTTGAAAAATTCGATTTCTTTAATTCCTCAACATATGAACAATGTAGTAACTTCAAAAAGAAACCAATTTCTTGATTTTTTTCTTAAATCAAGAATTCCAAGTTCAGGAATTTACCAAGATAAGAGTAGCGAATCTTGGCAGTAGGTATTATCGCCGTCACTGGAAAGTTAAGCGCTGGTATTGAATAGTTTTGATCGTACATCGTCACCGGAGTGTTAAGGGCCGGTAGCGTACAACTTCAGCAGAGTAGCGTATGAAGTTCCCCGGTCTTCTGTAATTTGAAATAAGGAGAAGATAGTACGTGTATTTATACACGCGGAAAAATCTCAACTCTTTTTAAAATATAAATCAACTTTTTTTAATAATACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG645-R" ref_strand="+" ref_description="TG645-R">
      <seq>catcttagtttgtcacacatatatatatacacacaacgagtatacagtcacttcatccacctgtgcaggaaccaaaccatgaggatccccttaatctcgaggctgcttctgtgttgagagataatccccagttgtttaaatcaaatgtgaagaaggctatgcttggtggaactgtggccaatgtaagcttcacgcggtgcctgtagcctgtcctctgatgctggcaataagtgtttccgatcagatgctgtatcatatggtgtctgcaaacttgcaatgccttcatttttatggagtatataaattttagcgaatatttattttgtataaatatcatcaattaggtatttggaaaatattgatctcctttattttctctttcttggggtctgcttcttgtttgaatgataaaagaaattatacacatcttggttgaaaccgatatcaatgaagtgtgcaggttgcttcggagactactgtcattcagatacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="84651" stop="83557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84351" g_stop="83857" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="TG645-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="TG645-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84351" e_stop="83857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTAGTTTGTCACACATATATATATACACACAACGAGTATACAGTCACTTCATCCACCTGTGCAGGAACCAAACCATGAGGATCCCCTTAATCTCGAGGCTGCTTCTGTGTTGAGAGATAATCCCCAGTTGTTTAAATCAAATGTGAAGAAGGCTATGCTTGGTGGAACTGTGGCCAATGTAAGCTTCACGCGGTGCCTGTAGCCTGTCCTCTGATGCTGGCAATAAGTGTTTCCGATCAGATGCTGTATCATATGGTGTCTGCAAACTTGCAATGCCTTCATTTTTATGGAGTATATAAATTTTAGCGAATATTTATTTTGTATAAATATCATCAATTAGGTATTTGGAAAATATTGATCTCCTTTATTTTCTCTTTCTTGGGGTCTGCTTCTTGTTTGAATGATAAAAGAAATTATACACATCTTGGTTGAAACCGATATCAATGAAGTGTGCAGGTTGCTTCGGAGACTACTGTCATTCAGATACAGAT</genome_strand>
        <mrna_strand>CATCTTAGTTTGTCACACATATATATATACACACAACGAGTATACAGTCACTTCATCCACCTGTGCAGGAACCAAACCATGAGGATCCCCTTAATCTCGAGGCTGCTTCTGTGTTGAGAGATAATCCCCAGTTGTTTAAATCAAATGTGAAGAAGGCTATGCTTGGTGGAACTGTGGCCAATGTAAGCTTCACGCGGTGCCTGTAGCCTGTCCTCTGATGCTGGCAATAAGTGTTTCCGATCAGATGCTGTATCATATGGTGTCTGCAAACTTGCAATGCCTTCATTTTTATGGAGTATATAAATTTTAGCGAATATTTATTTTGTATAAATATCATCAATTAGGTATTTGGAAAATATTGATCTCCTTTATTTTCTCTTTCTTGGGGTCTGCTTCTTGTTTGAATGATAAAAGAAATTATACACATCTTGGTTGAAACCGATATCAATGAAGTGTGCAGGTTGCTTCGGAGACTACTGTCATTCAGATACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="82848" PGL_stop="83313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82848" e_stop="83313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82848" e_stop="83313" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82848" stop="83313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG645-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATGCAATTTTCTTAATGCTACCCACATCCCTAAAAGCTAAAAAAACTTTTCTTTGATTTTTCTTGATATTTACAATGCTAACATATTCTTGAAAAATTCGATTTCTTTAATTCCTCAACATATGAACAATGTAGTAACTTCAAAAAGAAACCAATTTCTTGATTTTTTTCTTAAATCAAGAATTCCAAGTTCAGGAATTTACCAAGATAAGAGTAGCGAATCTTGGCAGTAGGTATTATCGCCGTCACTGGAAAGTTAAGCGCTGGTATTGAATAGTTTTGATCGTACATCGTCACCGGAGTGTTAAGGGCCGGTAGCGTACAACTTCAGCAGAGTAGCGTATGAAGTTCCCCGGTCTTCTGTAATTTGAAATAAGGAGAAGATAGTACGTGTATTTATACACGCGGAAAAATCTCAACTCTTTTTAAAATATAAATCAACTTTTTTTAATAATACATTATT</gDNA_template>
            <first_frame> N  D  A  I  F  L  M  L  P  T  S  L  K  A  K  K  T  F  L  *  F  F  L  I  F  T  M  L  T  Y  S  *  K  I  R  F  L  *  F  L  N  I  *  T  M  *  *  L  Q  K  E  T  N  F  L  I  F  F  L  N  Q  E  F  Q  V  Q  E  F  T  K  I  R  V  A  N  L  G  S  R  Y  Y  R  R  H  W  K  V  K  R  W  Y  *  I  V  L  I  V  H  R  H  R  S  V  K  G  R  *  R  T  T  S  A  E  *  R  M  K  F  P  G  L  L  *  F  E  I  R  R  R  *  Y  V  Y  L  Y  T  R  K  N  L  N  S  F  *  N  I  N  Q  L  F  L  I  I  H  Y  </first_frame>
            <second_frame>  M  M  Q  F  S  *  C  Y  P  H  P  *  K  L  K  K  L  F  F  D  F  S  *  Y  L  Q  C  *  H  I  L  E  K  F  D  F  F  N  S  S  T  Y  E  Q  C  S  N  F  K  K  K  P  I  S  *  F  F  S  *  I  K  N  S  K  F  R  N  L  P  R  *  E  *  R  I  L  A  V  G  I  I  A  V  T  G  K  L  S  A  G  I  E  *  F  *  S  Y  I  V  T  G  V  L  R  A  G  S  V  Q  L  Q  Q  S  S  V  *  S  S  P  V  F  C  N  L  K  *  G  E  D  S  T  C  I  Y  T  R  G  K  I  S  T  L  F  K  I  *  I  N  F  F  *  *  Y  I  I </second_frame>
            <third_frame>   *  C  N  F  L  N  A  T  H  I  P  K  S  *  K  N  F  S  L  I  F  L  D  I  Y  N  A  N  I  F  L  K  N  S  I  S  L  I  P  Q  H  M  N  N  V  V  T  S  K  R  N  Q  F  L  D  F  F  L  K  S  R  I  P  S  S  G  I  Y  Q  D  K  S  S  E  S  W  Q  *  V  L  S  P  S  L  E  S  *  A  L  V  L  N  S  F  D  R  T  S  S  P  E  C  *  G  P  V  A  Y  N  F  S  R  V  A  Y  E  V  P  R  S  S  V  I  *  N  K  E  K  I  V  R  V  F  I  H  A  E  K  S  Q  L  F  L  K  Y  K  S  T  F  F  N  N  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0116F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="84351" PGL_stop="83857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84351" e_stop="83857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84351" e_stop="83857" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84351" stop="83857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG645-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTTAGTTTGTCACACATATATATATACACACAACGAGTATACAGTCACTTCATCCACCTGTGCAGGAACCAAACCATGAGGATCCCCTTAATCTCGAGGCTGCTTCTGTGTTGAGAGATAATCCCCAGTTGTTTAAATCAAATGTGAAGAAGGCTATGCTTGGTGGAACTGTGGCCAATGTAAGCTTCACGCGGTGCCTGTAGCCTGTCCTCTGATGCTGGCAATAAGTGTTTCCGATCAGATGCTGTATCATATGGTGTCTGCAAACTTGCAATGCCTTCATTTTTATGGAGTATATAAATTTTAGCGAATATTTATTTTGTATAAATATCATCAATTAGGTATTTGGAAAATATTGATCTCCTTTATTTTCTCTTTCTTGGGGTCTGCTTCTTGTTTGAATGATAAAAGAAATTATACACATCTTGGTTGAAACCGATATCAATGAAGTGTGCAGGTTGCTTCGGAGACTACTGTCATTCAGATACAGAT</gDNA_template>
            <first_frame> H  L  S  L  S  H  I  Y  I  Y  T  Q  R  V  Y  S  H  F  I  H  L  C  R  N  Q  T  M  R  I  P  L  I  S  R  L  L  L  C  *  E  I  I  P  S  C  L  N  Q  M  *  R  R  L  C  L  V  E  L  W  P  M  *  A  S  R  G  A  C  S  L  S  S  D  A  G  N  K  C  F  R  S  D  A  V  S  Y  G  V  C  K  L  A  M  P  S  F  L  W  S  I  *  I  L  A  N  I  Y  F  V  *  I  S  S  I  R  Y  L  E  N  I  D  L  L  Y  F  L  F  L  G  V  C  F  L  F  E  *  *  K  K  L  Y  T  S  W  L  K  P  I  S  M  K  C  A  G  C  F  G  D  Y  C  H  S  D  T  D </first_frame>
            <second_frame>  I  L  V  C  H  T  Y  I  Y  T  H  N  E  Y  T  V  T  S  S  T  C  A  G  T  K  P  *  G  S  P  *  S  R  G  C  F  C  V  E  R  *  S  P  V  V  *  I  K  C  E  E  G  Y  A  W  W  N  C  G  Q  C  K  L  H  A  V  P  V  A  C  P  L  M  L  A  I  S  V  S  D  Q  M  L  Y  H  M  V  S  A  N  L  Q  C  L  H  F  Y  G  V  Y  K  F  *  R  I  F  I  L  Y  K  Y  H  Q  L  G  I  W  K  I  L  I  S  F  I  F  S  F  L  G  S  A  S  C  L  N  D  K  R  N  Y  T  H  L  G  *  N  R  Y  Q  *  S  V  Q  V  A  S  E  T  T  V  I  Q  I  Q   </second_frame>
            <third_frame>   S  *  F  V  T  H  I  Y  I  H  T  T  S  I  Q  S  L  H  P  P  V  Q  E  P  N  H  E  D  P  L  N  L  E  A  A  S  V  L  R  D  N  P  Q  L  F  K  S  N  V  K  K  A  M  L  G  G  T  V  A  N  V  S  F  T  R  C  L  *  P  V  L  *  C  W  Q  *  V  F  P  I  R  C  C  I  I  W  C  L  Q  T  C  N  A  F  I  F  M  E  Y  I  N  F  S  E  Y  L  F  C  I  N  I  I  N  *  V  F  G  K  Y  *  S  P  L  F  S  L  S  W  G  L  L  L  V  *  M  I  K  E  I  I  H  I  L  V  E  T  D  I  N  E  V  C  R  L  L  R  R  L  L  S  F  R  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84343" stop="84146"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVTHIYIHTTSIQSLHPPVQEPNHEDPLNLEAASVLRDNPQLFKSNVKKAMLGGTVANVSFTRCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 4080 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:04:50
-->
