<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:04:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349469" ref_strand="+" ref_description="SGN-E349469 [cTOS-1-A5]">
      <seq>tcgattgcaccaccaacaattatggctgcaacggaggttttatgacgaatgcattcgattttatcatagaaaatggtggaatttcaagggaatcagattatgaatacctaggtcaacagtacacatgcagaagccaagagaaaacagcagcagtgcaaataagtagttatcaagtcgtgcctgaaggtgaaacatcactattacaagccgtaactaaacagccagtgtccattggaatagctgctagccaagatttacagttttacgcgggaggaacttatgacggaaactgtgccgatcgaattaaccatgctgtaacagcgataggatatggaactgatgaggaaggtcagaaatattggttgttgaagaattcatggggaacaagttggggtgagaatgggtatatgaaaattataagagattctggggatccttcaggtctttgtgatatcgcaaagatgtcttcttatccaaacatagcgtagcatagataagcaagcatttcttatatgttgttgtattattaagaattgaggggaaaaaatattgattgtgtacatgcaaaagctttttgcatgaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="867" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="567" g_stop="1" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E349469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="567" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAA</genome_strand>
        <mrna_strand>TCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356607" ref_strand="+" ref_description="SGN-E356607 [cTOS-21-J21]">
      <seq>gaatttgcagatattacttcacaagagtttttggctaaatttactggattaaacatacctaattcatatctttcaccttctccaatgtcatcaacggaatttaaaaaaattaatgatcttagcgatgattacatgccgtctaacttggactggagagagtctggggctgtcactcaagtgaaacatcaaggtcgatgtggatgttgctgggcgttttctgcagttggatcactagaaggagcctacaaaattgcaacaggcaacttgatggaattctctgaacaggaacttctcgattgcaccaccaacaattatggctgcaacggaggttttatgacgaatgcattcgattttatcatagaaaatggtggaatttcaagggaatcagattatgaatacctaggtcaacagtacacatgcagaagccaagagaaaacagcagcagtgcaaataagtagttatcaagtcgtgcctgaaggtgaaacatcactattacaagccgtaactaaacagccagtgtccattggaatagctgctagccaagatttacagttttacgcgggaggaacttatgacggaaactgtgccgatcgaattaaccatgctgtaacagcgataggatatggaactgatgaggaaggtcagaaatattggttgttgaagaattcatggggaacaagttggggtgagaatgggtatatgaaaattataagagattctggggatccttcaggtctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="1233" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="933" g_stop="735" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="734" i_stop="661" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="660" g_stop="118" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="742" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E356607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="933" e_stop="735"/>
          <exon e_start="660" e_stop="118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTGGTAAGATAGAACACTGTCTCATGAAATATTATTCACTGATATTAATTAATTAGGTATTTTTTTTGTATTATTAGGATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTG</genome_strand>
        <mrna_strand>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTG..........................................................................GATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689261" ref_strand="+" ref_description="SGN-E689261 [t3_tus_80_M13]">
      <seq>ctcttntcttccntctgcccttctctggttttncttggagtgggggaaaccatctcttcacagtcttgtcccaaggtacttctgttgaatggtactcatgatcgagaaacttgtggccttagtgcttcttgctttgtgactgccattaccgatgccttaaatcgaacttatggagatcctcataattgtcttaaaaatcctccaaacaaatatatcaacacccttttggtgccgaaaaacggattaatacctatggataaagaaagcctggcttctcaaggaattttcaatgtggtcacggtggattcctttcctgatccaaaattgggtgtgctttttgatcccaaatcattgattcaagcactttccaatctgttgacggatgcatgaacctgaattctactatgatttgttaaaccttaatttatcagaaattttggagcttgtggcacagtagttttcgcaacggatctgaagagaaacgggctgtttgtgagaacttgtagatcgataacaattcaaagacctctgcattgatttcaactccatgaagtccgaaggaagagggtaaggcttccatagtttcacgttggcattggcttagatcttattcagctcttactgggaaagaatatcattgttcacaattgagctgaaacaaatctgatgtttcgtatttgggcacgtacagatcaatgaaattttttccaacctcagtttgtttggaattgaagcgtaatggctgttgtacataataaaatttcttttcatcattggccttattttataggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="9470" stop="6062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9170" g_stop="9144" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9143" i_stop="8857" i_length="287">
            <donor d_prob="0.794" d_score="0.00"/>
            <acceptor a_prob="0.150" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8856" g_stop="8809" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="75" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8808" i_stop="8649" i_length="160">
            <donor d_prob="0.666" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8648" g_stop="8523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="201" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8522" i_stop="7269" i_length="1254">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7268" g_stop="7176" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="294" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7175" i_stop="6957" i_length="219">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6956" g_stop="6783" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="468" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6782" i_stop="6694" i_length="89">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6693" g_stop="6368" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="794" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="818"/>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E689261" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9170" e_stop="9144"/>
          <exon e_start="8856" e_stop="8809"/>
          <exon e_start="8648" e_stop="8523"/>
          <exon e_start="7268" e_stop="7176"/>
          <exon e_start="6956" e_stop="6783"/>
          <exon e_start="6693" e_stop="6368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTACTTCCATCTGCCCTTCTCTGGTAGAGTAGCCTGCAACTTAAGTTCTTTCACATTAGTTCATAGATATGTTTAGCATATGCAAGTATCTAATTTTGTCGAGTCGATCCTGCTTGTGAGACAAACTAAAACAAGTAGGTTGAAGATATACCTAATATTGGCAAACTAATTTGTTTTCTTTTAATTGAGTTCATCTTCTCAAGCATGGCATTGTCATCACTCATCACTATTTTATTATCATTCTTCTTCTCATTTTTTTTTTGAAAAGAACGAAAATAAGTACTCAGTGGTTTTGCTGCTCCATTTGAAGGTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAGGTAATTTGGGCAATGCAAATAATTCCTGTATTGCTGCTTTCTCAGACAAATCGAGTTGTCTGAGTCAATGATTTCCTCGTCTCATTGATGTTTTTCTCATGTCAATGTTATTAATTTCTTCTTCTCCTTCCCCAACAATTCTTCTTCTTCTTAATCCCAGGTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCTGTAAGTAGCTAAGCATTTATGCGTTTCTTCTCAAATTGACTGATTGTTATGGATTTTCATTTGCCCACGGTGGGATTACACTGGGTATGTTGGTATGTATTTTCATTTAATTGGGGTTTTCACTCTCAGTCCTTATGTGCAGAACATGCATCCTGTTAGTTGAATATTTTTCTAATCATTGCCTAGATGTGTAACTTAAGGAAAGTGATGAGAAATTATGGACTACTCAATAGGTTCCCGAGTGTGATGTAGGCTCCTGAATCTAACCCAAAAGTTACTGAATAAAGCACACATAAAAGTCTCAATGTGTGGATGGATCGTCTGAAGCATTGACAATTGTTCATTCTCAAGCACTTCCACATCAGCAATATTCCAACTTATTTGTCAATTGTTCATTACTAAACTATAGCTGATGACAGATGCCTCAGTTAAATTTCACGGGAGCTCATATGATTTGCCATCCCATTTTTGTGATTACATGATCCGTACATTGAACGTCATGGAATTATGAGTTCCTTCCCCAAGAGATCAGTACTAATGCTGAAGCATTTATTATATGTGGTTTGCGTTGGTGTTTTGGTTCCAATCTTCTATAGTATCGTGTTTACTACATCTCATATCAGGCATCCTGGATAGGCTGGCAAAGTATGAGGGTGACAGTCAAAATTTTATTTTACTTAAATAGAAGTGTTTCTGAAAGTGGAGAGAATTAACTTGATGAAGAATTTAAACTCTCTTCATACATAAGTATTTTCCTACTGCATCTCATAAGCTAATTTTTGAGTCCTATAGTTCTGTAGATCGATGAAAAATGCTACTCCCTTTATCCCAATTGAATATACCAGATGCCATTCGGGTTTTTAAAATATGAGAATTGAAAAAGTCTGTTGTTTAGTATTAGCGGATGGAAAATCTTGGGGCACAGTTGCTTTTTGAATTGTGAAGAATAGAAAGAGAGATATGACAAAGAGGAAAAGTGGCGCAAGATTCCCCTCACACTACATATTAGGCTGTAAAGTTCTTCTTGAGAGTATAAATTATTTAATGGACAAACAATGGATATTCCCTAATATGTTGTAATTTGATCAAAATCATTAGGCTCTCATCACTGTAATTTTAATTTGCTTTTAGTTCATTTGGCAACTAGCTGAGTGTAACACACAACAGTAGATTTCACATACTTGCACAAACAACCTTGAATCATGTCATGAAAATTAAATTTTTTGTTTCTTCTGATGGAATTTTTCTTTTCAGCCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTGGTATGTTCCTGTTTCATGGTTATTAGAAATGCTTCTTGGTAAATCAATAATGTACTTGATCAGTTTCTATTGGTCATGAGATTTGTCGTTCTGATTTGAAAAACCTAGTGCTCATTTGAAATTCTCAAAGTTGGTCTCCTAAATGTCGCTAGATCCGGTACATGTGATTGCTTTGCTGGTGGTCCTCTTCAATTAAGTTGACGATTAGAGTTCTTGTAGGTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACGGTATGAAGTTCGCTAATAGGGAGTCCAGTAATCTTGTTTTGTTTATACATCTATCGATTTTCATAATATTTTTAGTGCTGCTATTGCAGGATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCAATGGCCTTATTTTATAGGAAA</genome_strand>
        <mrna_strand>CTCTTNTCTTCCNTCTGCCCTTCTCTG...............................................................................................................................................................................................................................................................................................GTTTTNCTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG................................................................................................................................................................GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG...........................................................................................................................................................................................................................GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG.........................................................................................GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCATTGGCCTTATTTTATAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326372" ref_strand="+" ref_description="SGN-E326372 [cTOC-14-C9]">
      <seq>tctttacttccatctgcccttctctggttttacttggagtgggggaaaccatctcttcacagtcttgtcccaaggtacttctgttgaatggtactcatgatcgagaaacttgtggccttagtgcttcttgctttgtgactgccattaccgatgccttaaatcgaacttatggagatcctcataattgtcttaaaaatcctccaaacaaatatatcaacacccttttggtgccgaaaaacggattaatacctatggataaagaaagcctggcttctcaaggaattttcaatgtggtcacggtggattcctttcctgatccaaaattgggtgtgctttttgatcccaaatcattgattcaagcactttccaatctgttgacggatgcatgaacctgaattctactatgatttgttaaaccttaatttatcagaaattttggagcttgtggcacagtagttttcgcaacggatctgaagagaaacgggctgtttgtgagaacttgtagatcgataacaattcaaagacctctgcattgatttcaactccatgaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="9469" stop="6306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9169" g_stop="9144" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9143" i_stop="8857" i_length="287">
            <donor d_prob="0.794" d_score="0.00"/>
            <acceptor a_prob="0.150" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8856" g_stop="8809" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="74" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8808" i_stop="8649" i_length="160">
            <donor d_prob="0.666" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8648" g_stop="8523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="200" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8522" i_stop="7269" i_length="1254">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7268" g_stop="7176" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="293" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7175" i_stop="6957" i_length="219">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6956" g_stop="6783" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="467" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6782" i_stop="6694" i_length="89">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6693" g_stop="6606" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="555" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E326372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9169" e_stop="9144"/>
          <exon e_start="8856" e_stop="8809"/>
          <exon e_start="8648" e_stop="8523"/>
          <exon e_start="7268" e_stop="7176"/>
          <exon e_start="6956" e_stop="6783"/>
          <exon e_start="6693" e_stop="6606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTACTTCCATCTGCCCTTCTCTGGTAGAGTAGCCTGCAACTTAAGTTCTTTCACATTAGTTCATAGATATGTTTAGCATATGCAAGTATCTAATTTTGTCGAGTCGATCCTGCTTGTGAGACAAACTAAAACAAGTAGGTTGAAGATATACCTAATATTGGCAAACTAATTTGTTTTCTTTTAATTGAGTTCATCTTCTCAAGCATGGCATTGTCATCACTCATCACTATTTTATTATCATTCTTCTTCTCATTTTTTTTTTGAAAAGAACGAAAATAAGTACTCAGTGGTTTTGCTGCTCCATTTGAAGGTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAGGTAATTTGGGCAATGCAAATAATTCCTGTATTGCTGCTTTCTCAGACAAATCGAGTTGTCTGAGTCAATGATTTCCTCGTCTCATTGATGTTTTTCTCATGTCAATGTTATTAATTTCTTCTTCTCCTTCCCCAACAATTCTTCTTCTTCTTAATCCCAGGTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCTGTAAGTAGCTAAGCATTTATGCGTTTCTTCTCAAATTGACTGATTGTTATGGATTTTCATTTGCCCACGGTGGGATTACACTGGGTATGTTGGTATGTATTTTCATTTAATTGGGGTTTTCACTCTCAGTCCTTATGTGCAGAACATGCATCCTGTTAGTTGAATATTTTTCTAATCATTGCCTAGATGTGTAACTTAAGGAAAGTGATGAGAAATTATGGACTACTCAATAGGTTCCCGAGTGTGATGTAGGCTCCTGAATCTAACCCAAAAGTTACTGAATAAAGCACACATAAAAGTCTCAATGTGTGGATGGATCGTCTGAAGCATTGACAATTGTTCATTCTCAAGCACTTCCACATCAGCAATATTCCAACTTATTTGTCAATTGTTCATTACTAAACTATAGCTGATGACAGATGCCTCAGTTAAATTTCACGGGAGCTCATATGATTTGCCATCCCATTTTTGTGATTACATGATCCGTACATTGAACGTCATGGAATTATGAGTTCCTTCCCCAAGAGATCAGTACTAATGCTGAAGCATTTATTATATGTGGTTTGCGTTGGTGTTTTGGTTCCAATCTTCTATAGTATCGTGTTTACTACATCTCATATCAGGCATCCTGGATAGGCTGGCAAAGTATGAGGGTGACAGTCAAAATTTTATTTTACTTAAATAGAAGTGTTTCTGAAAGTGGAGAGAATTAACTTGATGAAGAATTTAAACTCTCTTCATACATAAGTATTTTCCTACTGCATCTCATAAGCTAATTTTTGAGTCCTATAGTTCTGTAGATCGATGAAAAATGCTACTCCCTTTATCCCAATTGAATATACCAGATGCCATTCGGGTTTTTAAAATATGAGAATTGAAAAAGTCTGTTGTTTAGTATTAGCGGATGGAAAATCTTGGGGCACAGTTGCTTTTTGAATTGTGAAGAATAGAAAGAGAGATATGACAAAGAGGAAAAGTGGCGCAAGATTCCCCTCACACTACATATTAGGCTGTAAAGTTCTTCTTGAGAGTATAAATTATTTAATGGACAAACAATGGATATTCCCTAATATGTTGTAATTTGATCAAAATCATTAGGCTCTCATCACTGTAATTTTAATTTGCTTTTAGTTCATTTGGCAACTAGCTGAGTGTAACACACAACAGTAGATTTCACATACTTGCACAAACAACCTTGAATCATGTCATGAAAATTAAATTTTTTGTTTCTTCTGATGGAATTTTTCTTTTCAGCCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTGGTATGTTCCTGTTTCATGGTTATTAGAAATGCTTCTTGGTAAATCAATAATGTACTTGATCAGTTTCTATTGGTCATGAGATTTGTCGTTCTGATTTGAAAAACCTAGTGCTCATTTGAAATTCTCAAAGTTGGTCTCCTAAATGTCGCTAGATCCGGTACATGTGATTGCTTTGCTGGTGGTCCTCTTCAATTAAGTTGACGATTAGAGTTCTTGTAGGTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACGGTATGAAGTTCGCTAATAGGGAGTCCAGTAATCTTGTTTTGTTTATACATCTATCGATTTTCATAATATTTTTAGTGCTGCTATTGCAGGATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCC</genome_strand>
        <mrna_strand>TCTTTACTTCCATCTGCCCTTCTCTG...............................................................................................................................................................................................................................................................................................GTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG................................................................................................................................................................GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG...........................................................................................................................................................................................................................GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG.........................................................................................GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315381" ref_strand="+" ref_description="SGN-E315381 [cTOA-22-G5]">
      <seq>agttatcggctattcataatatcagttttcaattggtcataagtgcctgaaaagtcatttggatgcctgctttttgtgcttgctaatagtagggaattaaggaacctatccaccttctttgagatctttttgatcaattacacggcttcttataatccataatcttgggaagtttctataatttgcgttttgaagttatcttaaacaatgacggtcaaacgctagtgctaaatgctaagaaccatggcttgaaagttgttatcagtgagtaacttgcaatataaattgaatagtgttttcatcagcaagaattgcagctttctcagaccccactttggggatttcactaggtatgttgttcttgttagagtagcaccttgtagttatctcagaagtgatgaagttgaatttctataggaatttagggtgatgatccttctagaacaaggctctgaacagtaactctcaaagttaaaatctgtttcctgtgctcaaagtggtaaatagtggtcgttaaaccattcaaaatctcttttatttgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="12548" stop="11403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12241" g_stop="11703" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="547" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E315381" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12241" e_stop="11703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGTTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</genome_strand>
        <mrna_strand>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGGTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331029" ref_strand="+" ref_description="SGN-E331029 [cTOD-6-I3]">
      <seq>aaaaacacacaccactactggcatttttgaactattacatgttgacatctggggtccatatcaaacaacaactcatgataacttcaagtatttcattaccttagtagatgactttagtaaatctacctggacacaacttctaagctgtaaaagcaatgctttccatgtccttaaagcctttatactcatggttgagaaccagttcagcaccactgttaaaaccatcagatcagataatggtttggaattcactagcaatgaaaccactctattttttcaatccaaagggatcatccatcagaaatcctgcccctatactcctcaacaaaatggtgtggtcgaaagaaagcacaaatttattcttgaaacagcaagggctctactttttcagtctaaactcccagtgaaatattggagtgaatgtaacttgcttccacatatcttataaatagactaccttcttttcctctccacaataaaactccatatgaaattttatataaacacaaacctatctactctcacctaaagagttttggatgtttatgttatcctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="43717" stop="44877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44017" g_stop="44577" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E331029" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44017" e_stop="44577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTAGAGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATTAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCATTTTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCTTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAATAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTACTTTTTTAGTCGAAACTCCCAGTGAAATATTGGGGTGAATGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</genome_strand>
        <mrna_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTA-ACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227367" ref_strand="+" ref_description="SGN-E227367 [cLEL-30-P12](-)">
      <seq>atgtagtagatgtggagtattgtcctccagcttcatgcgaaggacctcattatcccttagaggcagccaaagcaaaggaggcagcccaaaatgcaccaaacacacagaggacattggaatatcatgaaagcatggaagaggaaatgatacgtggcttgcaacagttggggtggaaaaaaattgatgtcagctttcactcagcattctggcccttttttgcgcataacaatatccatgtgaagaatgagttttttcacaatgctggagtaggagtaattgctcatgtcgcagaccacataaagcaacaagagatgcaatccgaatcgacctccttaattactcctagcttgtaactcatatagtagaaagcaatccagcgtacatttaaatgaaatcaaaacactatcattgattggaaatgtatatttctcagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="73985" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73685" g_stop="73548" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73547" i_stop="73452" i_length="96">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73451" g_stop="73354" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="236" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73353" i_stop="73276" i_length="78">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73275" g_stop="73072" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="440" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73071" i_stop="72864" i_length="208">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72863" g_stop="72852" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="452" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E227367" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73685" e_stop="73548"/>
          <exon e_start="73451" e_stop="73354"/>
          <exon e_start="73275" e_stop="73072"/>
          <exon e_start="72863" e_stop="72852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAGTAGATGTGGAGTATTGTCCTCCAGCTTCATGCGAAGGACCTCATTATCCCTTAGAGGCAGCCAAAGCAAAGGAGGCAGCCCAAAATGCACCAAACACACAGAGGACATTGGAATATCATGAAAGCATGGAAGGTAATAGTACTAATAGATCTGTTTCTGTTTGTTGCAATGAATCTCAATGCCACTATCTCTATATCATACTAGAATCTTACTACTCTTTTCGAACAGAGGAAATGATACGTGGCTTGCAACAGTTGGGGTGGAAAAAAATTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTTTTTGCGCATAACAATATCCATGTAAGTACCTTCCATATTCCATTTCCTTGTGTTCCTCCCGGTCTGGGTTCTAATTCGATCTCTGTTTTCTGGTGACAGGTGAAGAATGAGTTTTTTCACAATGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGATGCAATCCGAATCGACCTCCTTAATTACTCCTAGCTTGTAACTCATATAGTAGAAAGCAATCCAGCGTACATTTAAATGAAATCAAAACACTATCATTGATTGGAAATGTATATTTCTCAGAAAACTAGTGGTTTACTTGATTATAAGCCAGTTTTTTCGTTAAGCATATTCAAGATATATGTATAGTTATATGATTTTTGGTGGAGGGTGTTTAATTGACCACCCTTTGCTCCGTCACCAGTTTCAATAGGAAGACCGTTGATGTTAGCTTTGTACCCTGTATTTGTTTTTATCTATGACATATTATGTGATTTGCTCTTTTCCATGTTTGAAAGGAAAAGTAAAAC</genome_strand>
        <mrna_strand>ATGTAGTAGATGTGGAGTATTGTCCTCCAGCTTCATGCGAAGGACCTCATTATCCCTTAGAGGCAGCCAAAGCAAAGGAGGCAGCCCAAAATGCACCAAACACACAGAGGACATTGGAATATCATGAAAGCATGGAAG................................................................................................AGGAAATGATACGTGGCTTGCAACAGTTGGGGTGGAAAAAAATTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTTTTTGCGCATAACAATATCCAT..............................................................................GTGAAGAATGAGTTTTTTCACAATGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGATGCAATCCGAATCGACCTCCTTAATTACTCCTAGCTTGTAACTCATATAGTAGAAAGCAATCCAGCGTACATTTAAATGAAATCAAAACACTATCATTGATTGGAAATGTATATTTCTCAGAAAAAAA................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227587" ref_strand="+" ref_description="SGN-E227587 [cLEL-30-P12](-)">
      <seq>cattggaatatcatgaaagcatggaagaggaaatgatacgtggcttgcaacagttggggtggaaaaaaattgatgtcagctttcactcagcattctggcccttttttgcgcataacaatatccatgtgaagaatgagttttttcacaatgctggagtaggagtaattgctcatgtcgcagaccacataaagcaacaagagatgcaatccgaatcgacctccttaattactcctagcttgtaactcatatagtagaaagcaatccagcgtacatttaaatgaaatcaaaacactatcattgattggaaatgtatatttctcagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="73874" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73574" g_stop="73548" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73547" i_stop="73452" i_length="96">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73451" g_stop="73354" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="125" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73353" i_stop="73276" i_length="78">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73275" g_stop="73072" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="329" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73071" i_stop="72864" i_length="208">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72863" g_stop="72852" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="341" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E227587" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73574" e_stop="73548"/>
          <exon e_start="73451" e_stop="73354"/>
          <exon e_start="73275" e_stop="73072"/>
          <exon e_start="72863" e_stop="72852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGAATATCATGAAAGCATGGAAGGTAATAGTACTAATAGATCTGTTTCTGTTTGTTGCAATGAATCTCAATGCCACTATCTCTATATCATACTAGAATCTTACTACTCTTTTCGAACAGAGGAAATGATACGTGGCTTGCAACAGTTGGGGTGGAAAAAAATTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTTTTTGCGCATAACAATATCCATGTAAGTACCTTCCATATTCCATTTCCTTGTGTTCCTCCCGGTCTGGGTTCTAATTCGATCTCTGTTTTCTGGTGACAGGTGAAGAATGAGTTTTTTCACAATGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGATGCAATCCGAATCGACCTCCTTAATTACTCCTAGCTTGTAACTCATATAGTAGAAAGCAATCCAGCGTACATTTAAATGAAATCAAAACACTATCATTGATTGGAAATGTATATTTCTCAGAAAACTAGTGGTTTACTTGATTATAAGCCAGTTTTTTCGTTAAGCATATTCAAGATATATGTATAGTTATATGATTTTTGGTGGAGGGTGTTTAATTGACCACCCTTTGCTCCGTCACCAGTTTCAATAGGAAGACCGTTGATGTTAGCTTTGTACCCTGTATTTGTTTTTATCTATGACATATTATGTGATTTGCTCTTTTCCATGTTTGAAAGGAAAAGTAAAAC</genome_strand>
        <mrna_strand>CATTGGAATATCATGAAAGCATGGAAG................................................................................................AGGAAATGATACGTGGCTTGCAACAGTTGGGGTGGAAAAAAATTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTTTTTGCGCATAACAATATCCAT..............................................................................GTGAAGAATGAGTTTTTTCACAATGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGATGCAATCCGAATCGACCTCCTTAATTACTCCTAGCTTGTAACTCATATAGTAGAAAGCAATCCAGCGTACATTTAAATGAAATCAAAACACTATCATTGATTGGAAATGTATATTTCTCAGAAAAAAA................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314426" ref_strand="+" ref_description="SGN-E314426 [cTOA-21-H4]">
      <seq>tgtagaagtcaaagctttagagcccatgcaatgagtacaactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaagcccaagtgactggacatatgtacaagcagagttgagaaggcggttgggaagaaactttttaatatatgcaagttcatgtaatacgttcactaaaaccttcactgggattgatggagctggaaaacgactagcagatgaagtcaggctggttgtaaagaagaaagagagcctgaagaagatatcctttttagctcattctcttggtggattgattgcaagatatgcacttggtgtactttattcatcagacaactgtaatgagcagtacaatgatgcagtcacttcaactagtgcnaacctcaaaccagtatgctcctcaaatgtangattgattgctggcctggagccagtcaattttatcacgttggcaacaccacatcttggtgtgagagggaaaaatcagctaccttnntctcttgggttgcctatcttggagaaacttgcagcacctatagctcctatatttgttggtcaaactggtagtcagctcttccttacagatggcaaacctacgaaaccacctcttttgctaaggatggcatcagactgtgatgatggaaatttatatcagcgcttggttcttttcaatggcgtngtctttatgctaatgtctcttatgatcgtatcctgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="80526" stop="75953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80226" g_stop="80096" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80095" i_stop="79221" i_length="875">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79220" g_stop="79153" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="199" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78996" g_stop="78926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="270" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78191" g_stop="77928" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="534" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77927" i_stop="76573" i_length="1355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76572" g_stop="76409" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="697" r_length="163" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76408" i_stop="76321" i_length="88">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76320" g_stop="76253" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="765" r_length="68" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E314426" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80226" e_stop="80096"/>
          <exon e_start="79220" e_stop="79153"/>
          <exon e_start="78996" e_stop="78926"/>
          <exon e_start="78191" e_stop="77928"/>
          <exon e_start="76572" e_stop="76409"/>
          <exon e_start="76320" e_stop="76253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAGATAAAAGAAGACATAGAGGACAGTAGAAAGCATAAGAAGAAGAAAAAGGAATGAAGTCATATGGTTTGAATGTGAGCATACTAGTTAGTAATTAGCTGCTATTCTCCTTTTCTATATTTTGCAGGGCTGTTAATTTGAGTAGTCAATTTGCCTGTTAACCATGCTCAAACCTTGACTTTCTAAGTGCTCAAGCAAGGAAAAGCTTTAACATTGAGAAAACATTGCGACCAGAACCAAATAGCATTTTATTTTTTTTAAGTGACCTTTGGTATGGAAATATTATGTTCGAGTAGTAGTGCTACCTTGATATTAGGTTTAAGTGGTCTTACATTCTCACTTTCAACACACATCACATGGTTGGAACATCTCTTTTTCCCAGAGTATGAAACTTGACCTGAGCAAATCTCCAGGTGACATACATGTCTATATCAGTTTGTGTATCACTTTTATATTTCGCTCTTGAACATTCTTCCATGTTCTTGAGGTTGATTTTCTTCCTATTCCATGATCTGGTTGTCAAGGGTTGTGTCTGATGTTTGTGTATGGCCACCGTCTTAATTGCTGATATATCACCGATATCAGTCAATTAAGTACGCCTCAACCCCAAATAAATGTTCATAGCTTCCATAGTAGAAAATTTCTTCGTGAAAATTAACATGCTGCTGTTTGCATCACTGATCTTTCCAATGAATGCAGCCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATGGTAAATTTTTTGGTGCAACCTGTCCTTATATTCTCATGTATTTACTTTTTAATTTTCTAGGTTTTTCTTTCTTCAATTTTGCATGCTACACCAAGAAAGTAAATGCTGATATTCGAATTCCAAGAAGCTATCTGACTTTCTTTTTGTGGCGTCCAGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAAGTGAGTATGTAAAAGGGTCACTGTGCTTAGTTGCGAGTTTGGTGCTACTGTGTGGTCTCATGGTGTAGGAAAGGTGGATATATTATTCTTGTTTGGTTGGGGCAGAAATATGATGCTACTAAGCTTTTTTATGTTTAGTTCTCTTTTAGGTTAACTAGGTTATTCTTTTAATTTGTATGGTTAGTGTTGGTTTTTGGTTATGGCAATACTCTATTCAAAGCAATAAAACCCTGACAGGTAGGTATATCCTACGGTGGTAGTTGCTGTTTAAGAAGTGTAGGTCAATGTAGTCAGTTTTGCAGCAAGTGAATAATAATTCAGCTCAGTACAATATTTGCTGAAAGATGTCCAGCTTTCCATCAGTGCATCACACAGATTTCTCTATTTTTCTAAAGTTGGCCACTATATATGCATATTTCCAACATAATTAAATAATTTTTTTTGTCGAAAGCTAGTTATTTCAGCCTGCATTCTGTATTCATCTCAGAAACTCGAGTTATGTCAAGGAAGTATATGAATGGTCAAACTTCACCTTTTTTTTACCAAATCCAAAAAAGAAAAAGTATATGAATGGTCAAATAGTTCCCACCCACACACTTCTGAGATGAAAACGTAACCCTCTTGAACCCGTGCTTATTAGGTGGCTACTTTCAAGTTTCCAATATATAGGTTGTGCTTACGGAGTGAAATTATGAACACTCATCCTCCTTATTGGAACTTTTGATTATGAACAGGTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAGGTCTGTTCTCATGGTACAATCTTATCACTTATGCATCAAAGAATCTTATCTCAGTGTTTCTTAAATGGGATGTTATTCTCCTTTTTAATTAAAGTAATTTACCTACTATACTTGTCCTTAAAAAGTAACTAGATTATGTCCATTACTGTTCCTTGTTTAGGGATTTCAGTTGTTTTTATGTATTTTAAATATTTATCTATATATCCTATTTTCTTGCTTTTAAATGTGTAAATCTCGTATTGGAGTCTCTACCTCAAAATTCTGAAACTTGAGTGGAATATTAGGTGCCAGTGGAGTAAAAACTTTAAAACGCTTGTATTAGTTCTAACTTAGAAGTTAAAATAAATCTTAATTGTAAATTGTTGTGCTTGGGTACCTCATGCATATATAACAGAGTGCTGTCAGTCATTTGTTTTTTTGGGGCATTTACGTAGTTTCTAAACAAATGTCTAGTAACAGTCATCTTTTCATTTGAGACGTCTTAATATATTTGATACCATTATATAAAATGGGACAGAGGCAAAGAAGTAAATTTTTTTGAATTCTTCATAAGAGTTAAGGCTTAGTGTGAAATACTAGAAAAGTTGATTCCATCAGCTTTTATTGTGTGCTTTATGAGGATAAAAGGATAGAAGCCTGTAGATATGCATGACTGTGAAAAAGCTTCTTGCATGGCATGCAACTGCTGGAAATTTTTGTAGTCCTCATCATCTTTGCAGAATATCCAAAAGATACTTGTTACTCCTATTTTACTTCTGTGTGGACCCTTCCTTTAATTGGTGCACAAATCTTAACAGGTATCAATGAAATGGCTAGAACTTTTCATTTACTATATTTTAATATCGTCTTCCAATATCAAATGTTGTTTCAAATAAGAGCACCATTTTAAGTGAAAGTTGGAAATTTATATTGTTTAATATTGAATGAGAGACACTATGCCAGTACTTGTTAACTTAAATAAATTATACAAGTGTTGATCAATATTCACAAGTAAAGAAAATGAAACATAACAGATTCTATTTTACTAAAGCAAATATCAGGAAAGAAAAGAACCATAATTAAACATTAAGCCACATGGTATAGCAAAAAACAAATGCCTTACCAGGCTGTCAATAAGTTGTGTGTCAAAAAACCTGAAGCCTGTTGTTGTCTGAGCTCATATTATCTTATGTATAAGGATATCATAATTTGTGACGCTAATGTTAGGTTGAATGAGTCTCTAAGTATTTTCTTGAATTTAAACTCTCAGAATTTGGATGGTATGTTATAATTAGTAGCTTATCTAGAAAAAAGTGTTATGATCACTTCGTAATGGCCCCTGACATCAGGAAAATTGATTAGCTTTTACTTTTCAGCTACCTT-TTCTCTTTGGGTTGCCTATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTTGTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACGAAACCACCTCTTTTGCTAAGGATGGCATCAGACTGTGATGATGGAAAATTTATGTGAGTAGAAATATCTCCACCAATCCTTGAATTAGCTGTTTTTCCATGCCTTTGTTTTTACCTTATGCCTGGAGTTTCCTTATTGCAGATCAGCGCTTGGTTCTTTCAAATGGCGTGTTCTTTATGCTAATGTCTCTTATGATCGTATCCTGTTGG</genome_strand>
        <mrna_strand>TGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATG............................................................................................................................................................CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTGGTTGTAAAGAAGAAAGAGAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCNAACCTCAAACCAGTATGCTCCTCAAATGTANGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTTNNTCTC-TTGGGTTGCCTATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTTGTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACGAAACCACCTCTTTTGCTAAGGATGGCATCAGACTGTGATGATGG-AAATTTAT........................................................................................ATCAGCGCTTGGTTCTTTTCAATGGCGTNGTCTTTATGCTAATGTCTCTTATGATCGTATCCTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264196" ref_strand="+" ref_description="SGN-E264196 [cLEG-64-N12]">
      <seq>gcggttgggaagaaactttttaatatatgcaagttcatgtaatacgttcactaaaaccttcactgggattgatggagctggaaaacgactagcagatgaagtcaggctggttgtaaagaagaaagaaagcctgaagaagatatcctttttagctcattctcttggtggattgattgcaagatatgcacttggtgtactttattcatcagacaactgtaatgagcagtacaatgatgcagtcacttcaactagtgcaaacctcaaaccagtatgctcctcaaatgtaggattgattgctggcctggagccagtcaattttatcacgttggcaacaccacatcttggtgtgagagggaaaaatcagctaccttttctctttgggttgcctatcttggagaaacttgcagcacctatagctcctatatttgttggtcaaactggtagtcagctcttccttacagatggcaaacctacgaaaccacctcttttgctaaggatggcatcagactgtgatgatggaaaatttatatcagcgcttggttctttcaaatggcgtgttctttatgctaatgtctcttatgatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="79481" stop="75961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79181" g_stop="79153" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78996" g_stop="78926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="100" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78191" g_stop="77928" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="364" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77927" i_stop="76573" i_length="1355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76572" g_stop="76409" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="528" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76408" i_stop="76321" i_length="88">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76320" g_stop="76265" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="584" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E264196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79181" e_stop="79153"/>
          <exon e_start="78996" e_stop="78926"/>
          <exon e_start="78191" e_stop="77928"/>
          <exon e_start="76572" e_stop="76409"/>
          <exon e_start="76320" e_stop="76265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGTTGGGAAGAAACTTTTTAATATATGGTAAATTTTTTGGTGCAACCTGTCCTTATATTCTCATGTATTTACTTTTTAATTTTCTAGGTTTTTCTTTCTTCAATTTTGCATGCTACACCAAGAAAGTAAATGCTGATATTCGAATTCCAAGAAGCTATCTGACTTTCTTTTTGTGGCGTCCAGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAAGTGAGTATGTAAAAGGGTCACTGTGCTTAGTTGCGAGTTTGGTGCTACTGTGTGGTCTCATGGTGTAGGAAAGGTGGATATATTATTCTTGTTTGGTTGGGGCAGAAATATGATGCTACTAAGCTTTTTTATGTTTAGTTCTCTTTTAGGTTAACTAGGTTATTCTTTTAATTTGTATGGTTAGTGTTGGTTTTTGGTTATGGCAATACTCTATTCAAAGCAATAAAACCCTGACAGGTAGGTATATCCTACGGTGGTAGTTGCTGTTTAAGAAGTGTAGGTCAATGTAGTCAGTTTTGCAGCAAGTGAATAATAATTCAGCTCAGTACAATATTTGCTGAAAGATGTCCAGCTTTCCATCAGTGCATCACACAGATTTCTCTATTTTTCTAAAGTTGGCCACTATATATGCATATTTCCAACATAATTAAATAATTTTTTTTGTCGAAAGCTAGTTATTTCAGCCTGCATTCTGTATTCATCTCAGAAACTCGAGTTATGTCAAGGAAGTATATGAATGGTCAAACTTCACCTTTTTTTTACCAAATCCAAAAAAGAAAAAGTATATGAATGGTCAAATAGTTCCCACCCACACACTTCTGAGATGAAAACGTAACCCTCTTGAACCCGTGCTTATTAGGTGGCTACTTTCAAGTTTCCAATATATAGGTTGTGCTTACGGAGTGAAATTATGAACACTCATCCTCCTTATTGGAACTTTTGATTATGAACAGGTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAGGTCTGTTCTCATGGTACAATCTTATCACTTATGCATCAAAGAATCTTATCTCAGTGTTTCTTAAATGGGATGTTATTCTCCTTTTTAATTAAAGTAATTTACCTACTATACTTGTCCTTAAAAAGTAACTAGATTATGTCCATTACTGTTCCTTGTTTAGGGATTTCAGTTGTTTTTATGTATTTTAAATATTTATCTATATATCCTATTTTCTTGCTTTTAAATGTGTAAATCTCGTATTGGAGTCTCTACCTCAAAATTCTGAAACTTGAGTGGAATATTAGGTGCCAGTGGAGTAAAAACTTTAAAACGCTTGTATTAGTTCTAACTTAGAAGTTAAAATAAATCTTAATTGTAAATTGTTGTGCTTGGGTACCTCATGCATATATAACAGAGTGCTGTCAGTCATTTGTTTTTTTGGGGCATTTACGTAGTTTCTAAACAAATGTCTAGTAACAGTCATCTTTTCATTTGAGACGTCTTAATATATTTGATACCATTATATAAAATGGGACAGAGGCAAAGAAGTAAATTTTTTTGAATTCTTCATAAGAGTTAAGGCTTAGTGTGAAATACTAGAAAAGTTGATTCCATCAGCTTTTATTGTGTGCTTTATGAGGATAAAAGGATAGAAGCCTGTAGATATGCATGACTGTGAAAAAGCTTCTTGCATGGCATGCAACTGCTGGAAATTTTTGTAGTCCTCATCATCTTTGCAGAATATCCAAAAGATACTTGTTACTCCTATTTTACTTCTGTGTGGACCCTTCCTTTAATTGGTGCACAAATCTTAACAGGTATCAATGAAATGGCTAGAACTTTTCATTTACTATATTTTAATATCGTCTTCCAATATCAAATGTTGTTTCAAATAAGAGCACCATTTTAAGTGAAAGTTGGAAATTTATATTGTTTAATATTGAATGAGAGACACTATGCCAGTACTTGTTAACTTAAATAAATTATACAAGTGTTGATCAATATTCACAAGTAAAGAAAATGAAACATAACAGATTCTATTTTACTAAAGCAAATATCAGGAAAGAAAAGAACCATAATTAAACATTAAGCCACATGGTATAGCAAAAAACAAATGCCTTACCAGGCTGTCAATAAGTTGTGTGTCAAAAAACCTGAAGCCTGTTGTTGTCTGAGCTCATATTATCTTATGTATAAGGATATCATAATTTGTGACGCTAATGTTAGGTTGAATGAGTCTCTAAGTATTTTCTTGAATTTAAACTCTCAGAATTTGGATGGTATGTTATAATTAGTAGCTTATCTAGAAAAAAGTGTTATGATCACTTCGTAATGGCCCCTGACATCAGGAAAATTGATTAGCTTTTACTTTTCAGCTACCTTTTCTCTTTGGGTTGCCTATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTTGTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACGAAACCACCTCTTTTGCTAAGGATGGCATCAGACTGTGATGATGGAAAATTTATGTGAGTAGAAATATCTCCACCAATCCTTGAATTAGCTGTTTTTCCATGCCTTTGTTTTTACCTTATGCCTGGAGTTTCCTTATTGCAGATCAGCGCTTGGTTCTTTCAAATGGCGTGTTCTTTATGCTAATGTCTCTTATGATC</genome_strand>
        <mrna_strand>GCGGTTGGGAAGAAACTTTTTAATATATG............................................................................................................................................................CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTTTTCTCTTTGGGTTGCCTATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTTGTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACGAAACCACCTCTTTTGCTAAGGATGGCATCAGACTGTGATGATGGAAAATTTAT........................................................................................ATCAGCGCTTGGTTCTTTCAAATGGCGTGTTCTTTATGCTAATGTCTCTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208687" ref_strand="+" ref_description="SGN-E208687 [cLEC-39-L7]">
      <seq>atactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaagcccaagtgactggacatatgtacaagcagagttgagaaggcggttgggaagaaactttttaatatatgcaagttcatgtaatacgttcactaaaaccttcactgggattgatggagctggaaaacgactagcagatgaagtcaggctggttgtaaagaagaaagaaagcctgaagaagatatcctttttagctcattctcttggtggattgattgcaagatatgcacttggtgtactttattcatcagacaactgtaatgagcagtacaatgatgcagtcacttcaactagtgcaaacctcaaaccagtatgctcctcaaatgtaggattgattgctggcctggagccagtcaattttatcacgttggcaacaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="80450" stop="77653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80150" g_stop="80096" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80095" i_stop="79221" i_length="875">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79220" g_stop="79153" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78996" g_stop="78926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="194" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78191" g_stop="77953" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="433" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E208687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80150" e_stop="80096"/>
          <exon e_start="79220" e_stop="79153"/>
          <exon e_start="78996" e_stop="78926"/>
          <exon e_start="78191" e_stop="77953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAGATAAAAGAAGACATAGAGGACAGTAGAAAGCATAAGAAGAAGAAAAAGGAATGAAGTCATATGGTTTGAATGTGAGCATACTAGTTAGTAATTAGCTGCTATTCTCCTTTTCTATATTTTGCAGGGCTGTTAATTTGAGTAGTCAATTTGCCTGTTAACCATGCTCAAACCTTGACTTTCTAAGTGCTCAAGCAAGGAAAAGCTTTAACATTGAGAAAACATTGCGACCAGAACCAAATAGCATTTTATTTTTTTTAAGTGACCTTTGGTATGGAAATATTATGTTCGAGTAGTAGTGCTACCTTGATATTAGGTTTAAGTGGTCTTACATTCTCACTTTCAACACACATCACATGGTTGGAACATCTCTTTTTCCCAGAGTATGAAACTTGACCTGAGCAAATCTCCAGGTGACATACATGTCTATATCAGTTTGTGTATCACTTTTATATTTCGCTCTTGAACATTCTTCCATGTTCTTGAGGTTGATTTTCTTCCTATTCCATGATCTGGTTGTCAAGGGTTGTGTCTGATGTTTGTGTATGGCCACCGTCTTAATTGCTGATATATCACCGATATCAGTCAATTAAGTACGCCTCAACCCCAAATAAATGTTCATAGCTTCCATAGTAGAAAATTTCTTCGTGAAAATTAACATGCTGCTGTTTGCATCACTGATCTTTCCAATGAATGCAGCCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATGGTAAATTTTTTGGTGCAACCTGTCCTTATATTCTCATGTATTTACTTTTTAATTTTCTAGGTTTTTCTTTCTTCAATTTTGCATGCTACACCAAGAAAGTAAATGCTGATATTCGAATTCCAAGAAGCTATCTGACTTTCTTTTTGTGGCGTCCAGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAAGTGAGTATGTAAAAGGGTCACTGTGCTTAGTTGCGAGTTTGGTGCTACTGTGTGGTCTCATGGTGTAGGAAAGGTGGATATATTATTCTTGTTTGGTTGGGGCAGAAATATGATGCTACTAAGCTTTTTTATGTTTAGTTCTCTTTTAGGTTAACTAGGTTATTCTTTTAATTTGTATGGTTAGTGTTGGTTTTTGGTTATGGCAATACTCTATTCAAAGCAATAAAACCCTGACAGGTAGGTATATCCTACGGTGGTAGTTGCTGTTTAAGAAGTGTAGGTCAATGTAGTCAGTTTTGCAGCAAGTGAATAATAATTCAGCTCAGTACAATATTTGCTGAAAGATGTCCAGCTTTCCATCAGTGCATCACACAGATTTCTCTATTTTTCTAAAGTTGGCCACTATATATGCATATTTCCAACATAATTAAATAATTTTTTTTGTCGAAAGCTAGTTATTTCAGCCTGCATTCTGTATTCATCTCAGAAACTCGAGTTATGTCAAGGAAGTATATGAATGGTCAAACTTCACCTTTTTTTTACCAAATCCAAAAAAGAAAAAGTATATGAATGGTCAAATAGTTCCCACCCACACACTTCTGAGATGAAAACGTAACCCTCTTGAACCCGTGCTTATTAGGTGGCTACTTTCAAGTTTCCAATATATAGGTTGTGCTTACGGAGTGAAATTATGAACACTCATCCTCCTTATTGGAACTTTTGATTATGAACAGGTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACA</genome_strand>
        <mrna_strand>ATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATG............................................................................................................................................................CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302097" ref_strand="+" ref_description="SGN-E302097 [cLEW-19-A14]">
      <seq>ttcttcttcgtcatcttcaccttcctcctcctcatcttctgcctcttgtgatcaacggcgatgctttaattggaaatttctctgtttttctgggataaacaacatctgtagaagtcaaagctttagagcccatgcaatgagtacaactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaagcccaagtgactggacatatgtacaagcagagttgagaaggcggttgggaagaaactttttaatatatgcaagttcatgtaatacgttcactaaaaccttcactgggattgatggagctggaaaacgactagcagatgaagtcaggctggttgtaaagaagaaagaaagcctgaagaagatatcctttttagctcattctcttggtggattgattgcaagatatgcacttggtgtactttattcatcagacaactgtaatgagcagtacaatgatgcagtcacttcaactagtgcaaacctcaaaccagtatgctcctcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84159" stop="77708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83859" g_stop="83768" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80240" g_stop="80096" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="237" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80095" i_stop="79221" i_length="875">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79220" g_stop="79153" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="305" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78996" g_stop="78926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="376" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78191" g_stop="78008" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="560" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E302097" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83859" e_stop="83768"/>
          <exon e_start="80240" e_stop="80096"/>
          <exon e_start="79220" e_stop="79153"/>
          <exon e_start="78996" e_stop="78926"/>
          <exon e_start="78191" e_stop="78008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTGGTAAATCTTTTCATTTCTCTATCTCTTTCTTTTTGACTTTGCAAATTGATCCAACTTCGATTTTTTTGTCTATTGAATTGAAATTGAGTGAACCCCTTTGTCTATTGAATTGAAATTTGTGCCTATTTTGGATCGTTTCTATTTTAATTAGTAGATTAATTGATTCCTGTTTATGATTTGTCTGATTTATCTTGAAAAAGAAGTTACGGGTGTTTTCAGTGCATATTGATTGGTTTGGTGGTTGAGTACTGAAGTTAATTGTAATGAAGATGGATAGAAATGCTAAAATACACAATCAAACCCTTTCTTATTGAGCAATTTGATTTTATCTCAAAGTAGAGTGTTGAATAAAAAAAGGGAGTAGCTCGTAGATATTTGCAGGTCAGATATGGAAAAATTATCACTGAATCAATAGTTCTAGATTGATTTTTCCTGTTCTTACGGATTTTTGGAGTTGTCTAATGTGAAAGAGGGACTACCATTTGGATTTGCCATCTCTTAAGGTTTCTTTTTTGGACACTTATATTGCGAAGGAAATGAAAGGGAAGTCGTATTTTATATTAACTTCTTGATTCTAAGGTGAGAGGACCTTGCACTGGACATTTAGTTGATTTCTTGCGGTAGAAATCACTTTAGAGATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTGTTGGAGAGTGCAATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTATTGGAGAGTGCAATGTAATTAACTTTCCAATCAAATATTTGGGGCTCCTGCTAGTGGAAAGGTTCAAATTGGGGAAATGTGGTCACCGGTGGTTCAAAATTTTTGGGTAGAAGAAAATCTACTTACAAAAAGTTGGATAAGATCATTTTAATAAAGGCAACATTATCAAATACCAACCCACGTGATATCCTCATTTCTTATCTTTGTTTCAGTTAGTATGAGATTGGAGAAATTAATGGTAACTTTTCTCTGGGATGGTACAAAAGGGAAAAGAAAGTATCATCTTGTGATTTTTTTAATGACAAGGGAAACCCGCAGCCGCTGTCCTTTGGGTGTGCACAAGGTAAAACCCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGTGGTAACCGCACTAGGCAAGCCCCGTGCGACGAGCTCGATCTAGAAGACAAACCCTTGCTTTCGCTGGCAAGGAGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCGAAAGGGTAGTACCATCTTGTGAATTGGGAAAGGGTATGACCCACCATTGGAAGTAGTAGGGGTTGGGAAAATTGGATGCTAGATATCTTAAAAAGATCATTGTCAGGAAAATTGTTATGGAGATTTGCCAACAAAGGGGGAGGTATGTGGAAGTATAAATAAGGTGGTGACCAATATTGGTAGTTCGTGAAGGAAGTAACGCCATCTTATAGGAAAAATCGATGGAAGGAATGAAGCACAAGATGGACTTTTGCAAAGTTCATGGAATATCAAAATCTGAAATATGAATCCAGTTCAGTTCTGGCTAAACTGCTGATGTGGGATAACACTTTGAAAGATGACTTCCTACACCTGGGCCCTGGCTGGCAACAAGGAGGTTGTAGTAGCTGAGATCCTAGAACTCACGGACACATTTATTTTGGAATATAACTTCTAAAGGACCACTACAGTATTGAGAATATGACAAGGTGGAGCTGTTTCTACTGAGGTTGTATATTCACGCATAATACAGGAAAACAGGTGGTATGATTTGAGAGGGATGCCTTGGAAGCACTGCATTGTCAAACCGTATTATAGGCTATGTTGCTCGGACTCTTCAAAAGTTTCATCTGGTGCATGGTGGATCCTTCAAAAGTTGTGCAATTTTGGAGGATTTGACACGGGTGTGGTCGGAGCAACTTAGATTATAGGTACTGAATCAGAGAAGGGGAGTTCAAGCTCAGAAGTCAGACCTTTGTGGAGAGGTTTATGAAAGACAAGGCAGCAAAGGAGATGTCATTCTTCATCAAGTTACGCAACTTAAGAAGCAATATTGGTTGTGGCCAATAAAAAGAGAGATTGTATAACAATTTTATCAATAGCAAAAAGAACAAAAAAGCTCTAAGGTACATTGCGCCTTTAGGCGCAAATAAAACATGGGTTTAAATGGAAAAAAGTGCAAGGGGAGAAACAGGACAAATACATACTCCACCTGTCCCAATTTATGTGACATACTTTTGTTTTTAGTCAGTCTCAAAAAGAACGATATATTTTCATATTTAGTAATAATTTAACTTTAAAATATCCATTTTACCCTTAATGAGATGTCTATGACTTGTTTTAGATCACAAATTTCAAAAGTCTTTCTTTCTTTAACTCCATGCCAAGTCAAAGAACATCACATAGATTGGGTTGGAGGGAATTTATTTGTTTAGTCCAAGACTAATAATTATAAGCATGAATGACAGATATATTTTGTACTTTTGCAAAGACACTTACCATCCCCATACCACACTTGTGTGATTACACTGGGTTTGCTGTTATACTTTTGCAAAGACAACACTGTTTTGATGCATTTTTTATGCAATTTTTGGGGAAAAAAAGGTCAAGATATAGAGATACTTGCATGATAATTTTCTAAGTCACCAAATTCTTAATTTTAGACTGAAATATTATACAAATTTTAGTCAACATTTAAAAGAATTTCAAAGTTGGAATATTTTAGGACGTATCGGATGGACAATTCAAGGTGTAAGGTGGCGAACAACTCAAGGTGTAAAGAGTGAAGGGAGTGAACTACTAAGGTGTAAAGAGTGGAATGGATGAGTGCCTTGAGAAGTTAAGAGGCTGCCTCACCCTTAGTCTTGTGCAAATATTAGCTTCACCTTTGAGACATTGGTCAGCACGTAAGTGATTATGCTATTGTTTAATCAACTGGTGAGAAGGATATGTTTTAGTCATTGCCATATTGCTTGTGCTTATATAGTGGGAGCTGTTACTTGCTTCTATCCAATCCCTTACCTGAGGTTGCAATTTTAATAGCTCCATCTTACATATACTAGTCATTAGGGTTGAAACTGCTCCATTTTTTTCTAAATTTCCTGTTTCCACTTGAAGTTATCACTATTTCACCAACTTTTAGACTGAAGTTTGCTTTTTAGACAAATCATTACTGTTTGTTCAGTGCTTATATTCCAGACTAGAGCCATAGAATCTGCTCTACATTCTCCTGGTGGATTGTGCAATTGGAAATGATTTCATAAAAGGTTATGTCATTTATGCTCTTGTAGTGCCCTTGGTGAACATGTTTAGTCTCCTCTCTGGATTCTGATTGCAGTCAACTGTTTTCTGAATTTTGAATAGCCATGTAGTATATCTGAGTTAGTACATAGTTTTTTGCGTTCTTCTGCAAAATCCTTATTGTTGCTTACACTTCAAATGTGTTGGCATGTATGAACCCATTTTTTTTTTTGTAAATTGTTTGTTTGAGGATTTTTTCTGCCCGTCTGCAGGGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAGATAAAAGAAGACATAGAGGACAGTAGAAAGCATAAGAAGAAGAAAAAGGAATGAAGTCATATGGTTTGAATGTGAGCATACTAGTTAGTAATTAGCTGCTATTCTCCTTTTCTATATTTTGCAGGGCTGTTAATTTGAGTAGTCAATTTGCCTGTTAACCATGCTCAAACCTTGACTTTCTAAGTGCTCAAGCAAGGAAAAGCTTTAACATTGAGAAAACATTGCGACCAGAACCAAATAGCATTTTATTTTTTTTAAGTGACCTTTGGTATGGAAATATTATGTTCGAGTAGTAGTGCTACCTTGATATTAGGTTTAAGTGGTCTTACATTCTCACTTTCAACACACATCACATGGTTGGAACATCTCTTTTTCCCAGAGTATGAAACTTGACCTGAGCAAATCTCCAGGTGACATACATGTCTATATCAGTTTGTGTATCACTTTTATATTTCGCTCTTGAACATTCTTCCATGTTCTTGAGGTTGATTTTCTTCCTATTCCATGATCTGGTTGTCAAGGGTTGTGTCTGATGTTTGTGTATGGCCACCGTCTTAATTGCTGATATATCACCGATATCAGTCAATTAAGTACGCCTCAACCCCAAATAAATGTTCATAGCTTCCATAGTAGAAAATTTCTTCGTGAAAATTAACATGCTGCTGTTTGCATCACTGATCTTTCCAATGAATGCAGCCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATGGTAAATTTTTTGGTGCAACCTGTCCTTATATTCTCATGTATTTACTTTTTAATTTTCTAGGTTTTTCTTTCTTCAATTTTGCATGCTACACCAAGAAAGTAAATGCTGATATTCGAATTCCAAGAAGCTATCTGACTTTCTTTTTGTGGCGTCCAGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAAGTGAGTATGTAAAAGGGTCACTGTGCTTAGTTGCGAGTTTGGTGCTACTGTGTGGTCTCATGGTGTAGGAAAGGTGGATATATTATTCTTGTTTGGTTGGGGCAGAAATATGATGCTACTAAGCTTTTTTATGTTTAGTTCTCTTTTAGGTTAACTAGGTTATTCTTTTAATTTGTATGGTTAGTGTTGGTTTTTGGTTATGGCAATACTCTATTCAAAGCAATAAAACCCTGACAGGTAGGTATATCCTACGGTGGTAGTTGCTGTTTAAGAAGTGTAGGTCAATGTAGTCAGTTTTGCAGCAAGTGAATAATAATTCAGCTCAGTACAATATTTGCTGAAAGATGTCCAGCTTTCCATCAGTGCATCACACAGATTTCTCTATTTTTCTAAAGTTGGCCACTATATATGCATATTTCCAACATAATTAAATAATTTTTTTTGTCGAAAGCTAGTTATTTCAGCCTGCATTCTGTATTCATCTCAGAAACTCGAGTTATGTCAAGGAAGTATATGAATGGTCAAACTTCACCTTTTTTTTACCAAATCCAAAAAAGAAAAAGTATATGAATGGTCAAATAGTTCCCACCCACACACTTCTGAGATGAAAACGTAACCCTCTTGAACCCGTGCTTATTAGGTGGCTACTTTCAAGTTTCCAATATATAGGTTGTGCTTACGGAGTGAAATTATGAACACTCATCCTCCTTATTGGAACTTTTGATTATGAACAGGTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATG</genome_strand>
        <mrna_strand>TTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTGCCTCTTGTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATG............................................................................................................................................................CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337023" ref_strand="+" ref_description="SGN-E337023 [cTOE-20-P5]">
      <seq>gatgctttaattggaaatttctctgtttttctgggataaacaacatctgttgaagtcaaagctttagagcccatgcaatgagtacaactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaagcccaagtgactggacatatgtacaagcagagttgagaaggcggttgggaagaaactttttaatatatgcaagttcatgtaatacgttcactaaaaccttcactgggattgatggagctggaaaacgactagcagatgaagtcaggctggttgtaaagaagaaagaaagcctgaataagatatcctttttagctcattctcttggtggattgattgcaagatatgcacttgggtgtactttattcatcagacaactgtaatgagcagtacaatgatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84100" stop="77753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83800" g_stop="83768" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80240" g_stop="80096" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="178" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80095" i_stop="79221" i_length="875">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79220" g_stop="79153" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="246" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78996" g_stop="78926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="317" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78191" g_stop="78053" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="457" r_length="140" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E337023" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83800" e_stop="83768"/>
          <exon e_start="80240" e_stop="80096"/>
          <exon e_start="79220" e_stop="79153"/>
          <exon e_start="78996" e_stop="78926"/>
          <exon e_start="78191" e_stop="78053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTTAATTGGAAATTTCTCTGTTTTTCTGGTAAATCTTTTCATTTCTCTATCTCTTTCTTTTTGACTTTGCAAATTGATCCAACTTCGATTTTTTTGTCTATTGAATTGAAATTGAGTGAACCCCTTTGTCTATTGAATTGAAATTTGTGCCTATTTTGGATCGTTTCTATTTTAATTAGTAGATTAATTGATTCCTGTTTATGATTTGTCTGATTTATCTTGAAAAAGAAGTTACGGGTGTTTTCAGTGCATATTGATTGGTTTGGTGGTTGAGTACTGAAGTTAATTGTAATGAAGATGGATAGAAATGCTAAAATACACAATCAAACCCTTTCTTATTGAGCAATTTGATTTTATCTCAAAGTAGAGTGTTGAATAAAAAAAGGGAGTAGCTCGTAGATATTTGCAGGTCAGATATGGAAAAATTATCACTGAATCAATAGTTCTAGATTGATTTTTCCTGTTCTTACGGATTTTTGGAGTTGTCTAATGTGAAAGAGGGACTACCATTTGGATTTGCCATCTCTTAAGGTTTCTTTTTTGGACACTTATATTGCGAAGGAAATGAAAGGGAAGTCGTATTTTATATTAACTTCTTGATTCTAAGGTGAGAGGACCTTGCACTGGACATTTAGTTGATTTCTTGCGGTAGAAATCACTTTAGAGATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTGTTGGAGAGTGCAATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTATTGGAGAGTGCAATGTAATTAACTTTCCAATCAAATATTTGGGGCTCCTGCTAGTGGAAAGGTTCAAATTGGGGAAATGTGGTCACCGGTGGTTCAAAATTTTTGGGTAGAAGAAAATCTACTTACAAAAAGTTGGATAAGATCATTTTAATAAAGGCAACATTATCAAATACCAACCCACGTGATATCCTCATTTCTTATCTTTGTTTCAGTTAGTATGAGATTGGAGAAATTAATGGTAACTTTTCTCTGGGATGGTACAAAAGGGAAAAGAAAGTATCATCTTGTGATTTTTTTAATGACAAGGGAAACCCGCAGCCGCTGTCCTTTGGGTGTGCACAAGGTAAAACCCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGTGGTAACCGCACTAGGCAAGCCCCGTGCGACGAGCTCGATCTAGAAGACAAACCCTTGCTTTCGCTGGCAAGGAGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCGAAAGGGTAGTACCATCTTGTGAATTGGGAAAGGGTATGACCCACCATTGGAAGTAGTAGGGGTTGGGAAAATTGGATGCTAGATATCTTAAAAAGATCATTGTCAGGAAAATTGTTATGGAGATTTGCCAACAAAGGGGGAGGTATGTGGAAGTATAAATAAGGTGGTGACCAATATTGGTAGTTCGTGAAGGAAGTAACGCCATCTTATAGGAAAAATCGATGGAAGGAATGAAGCACAAGATGGACTTTTGCAAAGTTCATGGAATATCAAAATCTGAAATATGAATCCAGTTCAGTTCTGGCTAAACTGCTGATGTGGGATAACACTTTGAAAGATGACTTCCTACACCTGGGCCCTGGCTGGCAACAAGGAGGTTGTAGTAGCTGAGATCCTAGAACTCACGGACACATTTATTTTGGAATATAACTTCTAAAGGACCACTACAGTATTGAGAATATGACAAGGTGGAGCTGTTTCTACTGAGGTTGTATATTCACGCATAATACAGGAAAACAGGTGGTATGATTTGAGAGGGATGCCTTGGAAGCACTGCATTGTCAAACCGTATTATAGGCTATGTTGCTCGGACTCTTCAAAAGTTTCATCTGGTGCATGGTGGATCCTTCAAAAGTTGTGCAATTTTGGAGGATTTGACACGGGTGTGGTCGGAGCAACTTAGATTATAGGTACTGAATCAGAGAAGGGGAGTTCAAGCTCAGAAGTCAGACCTTTGTGGAGAGGTTTATGAAAGACAAGGCAGCAAAGGAGATGTCATTCTTCATCAAGTTACGCAACTTAAGAAGCAATATTGGTTGTGGCCAATAAAAAGAGAGATTGTATAACAATTTTATCAATAGCAAAAAGAACAAAAAAGCTCTAAGGTACATTGCGCCTTTAGGCGCAAATAAAACATGGGTTTAAATGGAAAAAAGTGCAAGGGGAGAAACAGGACAAATACATACTCCACCTGTCCCAATTTATGTGACATACTTTTGTTTTTAGTCAGTCTCAAAAAGAACGATATATTTTCATATTTAGTAATAATTTAACTTTAAAATATCCATTTTACCCTTAATGAGATGTCTATGACTTGTTTTAGATCACAAATTTCAAAAGTCTTTCTTTCTTTAACTCCATGCCAAGTCAAAGAACATCACATAGATTGGGTTGGAGGGAATTTATTTGTTTAGTCCAAGACTAATAATTATAAGCATGAATGACAGATATATTTTGTACTTTTGCAAAGACACTTACCATCCCCATACCACACTTGTGTGATTACACTGGGTTTGCTGTTATACTTTTGCAAAGACAACACTGTTTTGATGCATTTTTTATGCAATTTTTGGGGAAAAAAAGGTCAAGATATAGAGATACTTGCATGATAATTTTCTAAGTCACCAAATTCTTAATTTTAGACTGAAATATTATACAAATTTTAGTCAACATTTAAAAGAATTTCAAAGTTGGAATATTTTAGGACGTATCGGATGGACAATTCAAGGTGTAAGGTGGCGAACAACTCAAGGTGTAAAGAGTGAAGGGAGTGAACTACTAAGGTGTAAAGAGTGGAATGGATGAGTGCCTTGAGAAGTTAAGAGGCTGCCTCACCCTTAGTCTTGTGCAAATATTAGCTTCACCTTTGAGACATTGGTCAGCACGTAAGTGATTATGCTATTGTTTAATCAACTGGTGAGAAGGATATGTTTTAGTCATTGCCATATTGCTTGTGCTTATATAGTGGGAGCTGTTACTTGCTTCTATCCAATCCCTTACCTGAGGTTGCAATTTTAATAGCTCCATCTTACATATACTAGTCATTAGGGTTGAAACTGCTCCATTTTTTTCTAAATTTCCTGTTTCCACTTGAAGTTATCACTATTTCACCAACTTTTAGACTGAAGTTTGCTTTTTAGACAAATCATTACTGTTTGTTCAGTGCTTATATTCCAGACTAGAGCCATAGAATCTGCTCTACATTCTCCTGGTGGATTGTGCAATTGGAAATGATTTCATAAAAGGTTATGTCATTTATGCTCTTGTAGTGCCCTTGGTGAACATGTTTAGTCTCCTCTCTGGATTCTGATTGCAGTCAACTGTTTTCTGAATTTTGAATAGCCATGTAGTATATCTGAGTTAGTACATAGTTTTTTGCGTTCTTCTGCAAAATCCTTATTGTTGCTTACACTTCAAATGTGTTGGCATGTATGAACCCATTTTTTTTTTTGTAAATTGTTTGTTTGAGGATTTTTTCTGCCCGTCTGCAGGGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAGATAAAAGAAGACATAGAGGACAGTAGAAAGCATAAGAAGAAGAAAAAGGAATGAAGTCATATGGTTTGAATGTGAGCATACTAGTTAGTAATTAGCTGCTATTCTCCTTTTCTATATTTTGCAGGGCTGTTAATTTGAGTAGTCAATTTGCCTGTTAACCATGCTCAAACCTTGACTTTCTAAGTGCTCAAGCAAGGAAAAGCTTTAACATTGAGAAAACATTGCGACCAGAACCAAATAGCATTTTATTTTTTTTAAGTGACCTTTGGTATGGAAATATTATGTTCGAGTAGTAGTGCTACCTTGATATTAGGTTTAAGTGGTCTTACATTCTCACTTTCAACACACATCACATGGTTGGAACATCTCTTTTTCCCAGAGTATGAAACTTGACCTGAGCAAATCTCCAGGTGACATACATGTCTATATCAGTTTGTGTATCACTTTTATATTTCGCTCTTGAACATTCTTCCATGTTCTTGAGGTTGATTTTCTTCCTATTCCATGATCTGGTTGTCAAGGGTTGTGTCTGATGTTTGTGTATGGCCACCGTCTTAATTGCTGATATATCACCGATATCAGTCAATTAAGTACGCCTCAACCCCAAATAAATGTTCATAGCTTCCATAGTAGAAAATTTCTTCGTGAAAATTAACATGCTGCTGTTTGCATCACTGATCTTTCCAATGAATGCAGCCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATGGTAAATTTTTTGGTGCAACCTGTCCTTATATTCTCATGTATTTACTTTTTAATTTTCTAGGTTTTTCTTTCTTCAATTTTGCATGCTACACCAAGAAAGTAAATGCTGATATTCGAATTCCAAGAAGCTATCTGACTTTCTTTTTGTGGCGTCCAGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAAGTGAGTATGTAAAAGGGTCACTGTGCTTAGTTGCGAGTTTGGTGCTACTGTGTGGTCTCATGGTGTAGGAAAGGTGGATATATTATTCTTGTTTGGTTGGGGCAGAAATATGATGCTACTAAGCTTTTTTATGTTTAGTTCTCTTTTAGGTTAACTAGGTTATTCTTTTAATTTGTATGGTTAGTGTTGGTTTTTGGTTATGGCAATACTCTATTCAAAGCAATAAAACCCTGACAGGTAGGTATATCCTACGGTGGTAGTTGCTGTTTAAGAAGTGTAGGTCAATGTAGTCAGTTTTGCAGCAAGTGAATAATAATTCAGCTCAGTACAATATTTGCTGAAAGATGTCCAGCTTTCCATCAGTGCATCACACAGATTTCTCTATTTTTCTAAAGTTGGCCACTATATATGCATATTTCCAACATAATTAAATAATTTTTTTTGTCGAAAGCTAGTTATTTCAGCCTGCATTCTGTATTCATCTCAGAAACTCGAGTTATGTCAAGGAAGTATATGAATGGTCAAACTTCACCTTTTTTTTACCAAATCCAAAAAAGAAAAAGTATATGAATGGTCAAATAGTTCCCACCCACACACTTCTGAGATGAAAACGTAACCCTCTTGAACCCGTGCTTATTAGGTGGCTACTTTCAAGTTTCCAATATATAGGTTGTGCTTACGGAGTGAAATTATGAACACTCATCCTCCTTATTGGAACTTTTGATTATGAACAGGTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTT-GGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAG</genome_strand>
        <mrna_strand>GATGCTTTAATTGGAAATTTCTCTGTTTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACAACATCTGTTGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATG............................................................................................................................................................CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAATAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266075" ref_strand="+" ref_description="SGN-E266075 [cLEI-6-E22]">
      <seq>aacaaacagaatccccaaaaggtcctcttctctttctacacttgttgggttatcccatagccatatatatatatggcgtcatcagcgacagtacttcatcattattctcctcgcccttctttctctaccaattcttcttcttcttcgtcatcttcaccttcctcctcctcatcttcttcctcttttgatcaacggcgatgctttaattggaaatttctctgtttttctgggataaacaacatctgtagaagtcaaagctttagagcccatgcaatgagtacaactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaaggtagggagttttgtttgctcatcctggaaggatgctttcacgtgtctacaaagtttatatacatgtgtgtagatatatgtatgtacatgcaattgaaaaaaaaatgtaatggaaagtgaacatgatatctcgcgagatttagaaaactgtaaggagtctgggtgttggggtcaaaaaaagataaaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84296" stop="79606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83996" g_stop="83768" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80240" g_stop="79906" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="565" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E266075" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83996" e_stop="83768"/>
          <exon e_start="80240" e_stop="79906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTGGTAAATCTTTTCATTTCTCTATCTCTTTCTTTTTGACTTTGCAAATTGATCCAACTTCGATTTTTTTGTCTATTGAATTGAAATTGAGTGAACCCCTTTGTCTATTGAATTGAAATTTGTGCCTATTTTGGATCGTTTCTATTTTAATTAGTAGATTAATTGATTCCTGTTTATGATTTGTCTGATTTATCTTGAAAAAGAAGTTACGGGTGTTTTCAGTGCATATTGATTGGTTTGGTGGTTGAGTACTGAAGTTAATTGTAATGAAGATGGATAGAAATGCTAAAATACACAATCAAACCCTTTCTTATTGAGCAATTTGATTTTATCTCAAAGTAGAGTGTTGAATAAAAAAAGGGAGTAGCTCGTAGATATTTGCAGGTCAGATATGGAAAAATTATCACTGAATCAATAGTTCTAGATTGATTTTTCCTGTTCTTACGGATTTTTGGAGTTGTCTAATGTGAAAGAGGGACTACCATTTGGATTTGCCATCTCTTAAGGTTTCTTTTTTGGACACTTATATTGCGAAGGAAATGAAAGGGAAGTCGTATTTTATATTAACTTCTTGATTCTAAGGTGAGAGGACCTTGCACTGGACATTTAGTTGATTTCTTGCGGTAGAAATCACTTTAGAGATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTGTTGGAGAGTGCAATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTATTGGAGAGTGCAATGTAATTAACTTTCCAATCAAATATTTGGGGCTCCTGCTAGTGGAAAGGTTCAAATTGGGGAAATGTGGTCACCGGTGGTTCAAAATTTTTGGGTAGAAGAAAATCTACTTACAAAAAGTTGGATAAGATCATTTTAATAAAGGCAACATTATCAAATACCAACCCACGTGATATCCTCATTTCTTATCTTTGTTTCAGTTAGTATGAGATTGGAGAAATTAATGGTAACTTTTCTCTGGGATGGTACAAAAGGGAAAAGAAAGTATCATCTTGTGATTTTTTTAATGACAAGGGAAACCCGCAGCCGCTGTCCTTTGGGTGTGCACAAGGTAAAACCCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGTGGTAACCGCACTAGGCAAGCCCCGTGCGACGAGCTCGATCTAGAAGACAAACCCTTGCTTTCGCTGGCAAGGAGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCGAAAGGGTAGTACCATCTTGTGAATTGGGAAAGGGTATGACCCACCATTGGAAGTAGTAGGGGTTGGGAAAATTGGATGCTAGATATCTTAAAAAGATCATTGTCAGGAAAATTGTTATGGAGATTTGCCAACAAAGGGGGAGGTATGTGGAAGTATAAATAAGGTGGTGACCAATATTGGTAGTTCGTGAAGGAAGTAACGCCATCTTATAGGAAAAATCGATGGAAGGAATGAAGCACAAGATGGACTTTTGCAAAGTTCATGGAATATCAAAATCTGAAATATGAATCCAGTTCAGTTCTGGCTAAACTGCTGATGTGGGATAACACTTTGAAAGATGACTTCCTACACCTGGGCCCTGGCTGGCAACAAGGAGGTTGTAGTAGCTGAGATCCTAGAACTCACGGACACATTTATTTTGGAATATAACTTCTAAAGGACCACTACAGTATTGAGAATATGACAAGGTGGAGCTGTTTCTACTGAGGTTGTATATTCACGCATAATACAGGAAAACAGGTGGTATGATTTGAGAGGGATGCCTTGGAAGCACTGCATTGTCAAACCGTATTATAGGCTATGTTGCTCGGACTCTTCAAAAGTTTCATCTGGTGCATGGTGGATCCTTCAAAAGTTGTGCAATTTTGGAGGATTTGACACGGGTGTGGTCGGAGCAACTTAGATTATAGGTACTGAATCAGAGAAGGGGAGTTCAAGCTCAGAAGTCAGACCTTTGTGGAGAGGTTTATGAAAGACAAGGCAGCAAAGGAGATGTCATTCTTCATCAAGTTACGCAACTTAAGAAGCAATATTGGTTGTGGCCAATAAAAAGAGAGATTGTATAACAATTTTATCAATAGCAAAAAGAACAAAAAAGCTCTAAGGTACATTGCGCCTTTAGGCGCAAATAAAACATGGGTTTAAATGGAAAAAAGTGCAAGGGGAGAAACAGGACAAATACATACTCCACCTGTCCCAATTTATGTGACATACTTTTGTTTTTAGTCAGTCTCAAAAAGAACGATATATTTTCATATTTAGTAATAATTTAACTTTAAAATATCCATTTTACCCTTAATGAGATGTCTATGACTTGTTTTAGATCACAAATTTCAAAAGTCTTTCTTTCTTTAACTCCATGCCAAGTCAAAGAACATCACATAGATTGGGTTGGAGGGAATTTATTTGTTTAGTCCAAGACTAATAATTATAAGCATGAATGACAGATATATTTTGTACTTTTGCAAAGACACTTACCATCCCCATACCACACTTGTGTGATTACACTGGGTTTGCTGTTATACTTTTGCAAAGACAACACTGTTTTGATGCATTTTTTATGCAATTTTTGGGGAAAAAAAGGTCAAGATATAGAGATACTTGCATGATAATTTTCTAAGTCACCAAATTCTTAATTTTAGACTGAAATATTATACAAATTTTAGTCAACATTTAAAAGAATTTCAAAGTTGGAATATTTTAGGACGTATCGGATGGACAATTCAAGGTGTAAGGTGGCGAACAACTCAAGGTGTAAAGAGTGAAGGGAGTGAACTACTAAGGTGTAAAGAGTGGAATGGATGAGTGCCTTGAGAAGTTAAGAGGCTGCCTCACCCTTAGTCTTGTGCAAATATTAGCTTCACCTTTGAGACATTGGTCAGCACGTAAGTGATTATGCTATTGTTTAATCAACTGGTGAGAAGGATATGTTTTAGTCATTGCCATATTGCTTGTGCTTATATAGTGGGAGCTGTTACTTGCTTCTATCCAATCCCTTACCTGAGGTTGCAATTTTAATAGCTCCATCTTACATATACTAGTCATTAGGGTTGAAACTGCTCCATTTTTTTCTAAATTTCCTGTTTCCACTTGAAGTTATCACTATTTCACCAACTTTTAGACTGAAGTTTGCTTTTTAGACAAATCATTACTGTTTGTTCAGTGCTTATATTCCAGACTAGAGCCATAGAATCTGCTCTACATTCTCCTGGTGGATTGTGCAATTGGAAATGATTTCATAAAAGGTTATGTCATTTATGCTCTTGTAGTGCCCTTGGTGAACATGTTTAGTCTCCTCTCTGGATTCTGATTGCAGTCAACTGTTTTCTGAATTTTGAATAGCCATGTAGTATATCTGAGTTAGTACATAGTTTTTTGCGTTCTTCTGCAAAATCCTTATTGTTGCTTACACTTCAAATGTGTTGGCATGTATGAACCCATTTTTTTTTTTGTAAATTGTTTGTTTGAGGATTTTTTCTGCCCGTCTGCAGGGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTC-AAAAAAGATAAAAGAAGA</genome_strand>
        <mrna_strand>AACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAAGATAAAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267081" ref_strand="+" ref_description="SGN-E267081 [cLEI-4-M10]">
      <seq>aacaaacagaatccccaaaaggtcctcttctctttctacacttgttgggttatcccatagccatatatatatatggcgtcatcagcgacagtacttcatcattattctcctcgcccttctttctctaccaattcttcttcttcttcgtcatcttcaccttcctcctcctcatcttcttcctcttttgatcaacggcgatgctttaattggaaatttctctgtttttctgggataaacaacatctgtagaagtcaaagctttagagcccatgcaatgagtacaactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaaggtagggagttttgtttgctcatcctggaaggatgctttcacgtgtctacaaagtttatatacatgtgtgtagatatatgtatgtacatgcaattgaaaaaaaaatgtaatggaaagtgaacatgatatctcgcgagatttagaaaactgtaaggagtctgggtgttggggtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84296" stop="79621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83996" g_stop="83768" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80240" g_stop="79921" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="549" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E267081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83996" e_stop="83768"/>
          <exon e_start="80240" e_stop="79921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTGGTAAATCTTTTCATTTCTCTATCTCTTTCTTTTTGACTTTGCAAATTGATCCAACTTCGATTTTTTTGTCTATTGAATTGAAATTGAGTGAACCCCTTTGTCTATTGAATTGAAATTTGTGCCTATTTTGGATCGTTTCTATTTTAATTAGTAGATTAATTGATTCCTGTTTATGATTTGTCTGATTTATCTTGAAAAAGAAGTTACGGGTGTTTTCAGTGCATATTGATTGGTTTGGTGGTTGAGTACTGAAGTTAATTGTAATGAAGATGGATAGAAATGCTAAAATACACAATCAAACCCTTTCTTATTGAGCAATTTGATTTTATCTCAAAGTAGAGTGTTGAATAAAAAAAGGGAGTAGCTCGTAGATATTTGCAGGTCAGATATGGAAAAATTATCACTGAATCAATAGTTCTAGATTGATTTTTCCTGTTCTTACGGATTTTTGGAGTTGTCTAATGTGAAAGAGGGACTACCATTTGGATTTGCCATCTCTTAAGGTTTCTTTTTTGGACACTTATATTGCGAAGGAAATGAAAGGGAAGTCGTATTTTATATTAACTTCTTGATTCTAAGGTGAGAGGACCTTGCACTGGACATTTAGTTGATTTCTTGCGGTAGAAATCACTTTAGAGATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTGTTGGAGAGTGCAATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTATTGGAGAGTGCAATGTAATTAACTTTCCAATCAAATATTTGGGGCTCCTGCTAGTGGAAAGGTTCAAATTGGGGAAATGTGGTCACCGGTGGTTCAAAATTTTTGGGTAGAAGAAAATCTACTTACAAAAAGTTGGATAAGATCATTTTAATAAAGGCAACATTATCAAATACCAACCCACGTGATATCCTCATTTCTTATCTTTGTTTCAGTTAGTATGAGATTGGAGAAATTAATGGTAACTTTTCTCTGGGATGGTACAAAAGGGAAAAGAAAGTATCATCTTGTGATTTTTTTAATGACAAGGGAAACCCGCAGCCGCTGTCCTTTGGGTGTGCACAAGGTAAAACCCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGTGGTAACCGCACTAGGCAAGCCCCGTGCGACGAGCTCGATCTAGAAGACAAACCCTTGCTTTCGCTGGCAAGGAGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCGAAAGGGTAGTACCATCTTGTGAATTGGGAAAGGGTATGACCCACCATTGGAAGTAGTAGGGGTTGGGAAAATTGGATGCTAGATATCTTAAAAAGATCATTGTCAGGAAAATTGTTATGGAGATTTGCCAACAAAGGGGGAGGTATGTGGAAGTATAAATAAGGTGGTGACCAATATTGGTAGTTCGTGAAGGAAGTAACGCCATCTTATAGGAAAAATCGATGGAAGGAATGAAGCACAAGATGGACTTTTGCAAAGTTCATGGAATATCAAAATCTGAAATATGAATCCAGTTCAGTTCTGGCTAAACTGCTGATGTGGGATAACACTTTGAAAGATGACTTCCTACACCTGGGCCCTGGCTGGCAACAAGGAGGTTGTAGTAGCTGAGATCCTAGAACTCACGGACACATTTATTTTGGAATATAACTTCTAAAGGACCACTACAGTATTGAGAATATGACAAGGTGGAGCTGTTTCTACTGAGGTTGTATATTCACGCATAATACAGGAAAACAGGTGGTATGATTTGAGAGGGATGCCTTGGAAGCACTGCATTGTCAAACCGTATTATAGGCTATGTTGCTCGGACTCTTCAAAAGTTTCATCTGGTGCATGGTGGATCCTTCAAAAGTTGTGCAATTTTGGAGGATTTGACACGGGTGTGGTCGGAGCAACTTAGATTATAGGTACTGAATCAGAGAAGGGGAGTTCAAGCTCAGAAGTCAGACCTTTGTGGAGAGGTTTATGAAAGACAAGGCAGCAAAGGAGATGTCATTCTTCATCAAGTTACGCAACTTAAGAAGCAATATTGGTTGTGGCCAATAAAAAGAGAGATTGTATAACAATTTTATCAATAGCAAAAAGAACAAAAAAGCTCTAAGGTACATTGCGCCTTTAGGCGCAAATAAAACATGGGTTTAAATGGAAAAAAGTGCAAGGGGAGAAACAGGACAAATACATACTCCACCTGTCCCAATTTATGTGACATACTTTTGTTTTTAGTCAGTCTCAAAAAGAACGATATATTTTCATATTTAGTAATAATTTAACTTTAAAATATCCATTTTACCCTTAATGAGATGTCTATGACTTGTTTTAGATCACAAATTTCAAAAGTCTTTCTTTCTTTAACTCCATGCCAAGTCAAAGAACATCACATAGATTGGGTTGGAGGGAATTTATTTGTTTAGTCCAAGACTAATAATTATAAGCATGAATGACAGATATATTTTGTACTTTTGCAAAGACACTTACCATCCCCATACCACACTTGTGTGATTACACTGGGTTTGCTGTTATACTTTTGCAAAGACAACACTGTTTTGATGCATTTTTTATGCAATTTTTGGGGAAAAAAAGGTCAAGATATAGAGATACTTGCATGATAATTTTCTAAGTCACCAAATTCTTAATTTTAGACTGAAATATTATACAAATTTTAGTCAACATTTAAAAGAATTTCAAAGTTGGAATATTTTAGGACGTATCGGATGGACAATTCAAGGTGTAAGGTGGCGAACAACTCAAGGTGTAAAGAGTGAAGGGAGTGAACTACTAAGGTGTAAAGAGTGGAATGGATGAGTGCCTTGAGAAGTTAAGAGGCTGCCTCACCCTTAGTCTTGTGCAAATATTAGCTTCACCTTTGAGACATTGGTCAGCACGTAAGTGATTATGCTATTGTTTAATCAACTGGTGAGAAGGATATGTTTTAGTCATTGCCATATTGCTTGTGCTTATATAGTGGGAGCTGTTACTTGCTTCTATCCAATCCCTTACCTGAGGTTGCAATTTTAATAGCTCCATCTTACATATACTAGTCATTAGGGTTGAAACTGCTCCATTTTTTTCTAAATTTCCTGTTTCCACTTGAAGTTATCACTATTTCACCAACTTTTAGACTGAAGTTTGCTTTTTAGACAAATCATTACTGTTTGTTCAGTGCTTATATTCCAGACTAGAGCCATAGAATCTGCTCTACATTCTCCTGGTGGATTGTGCAATTGGAAATGATTTCATAAAAGGTTATGTCATTTATGCTCTTGTAGTGCCCTTGGTGAACATGTTTAGTCTCCTCTCTGGATTCTGATTGCAGTCAACTGTTTTCTGAATTTTGAATAGCCATGTAGTATATCTGAGTTAGTACATAGTTTTTTGCGTTCTTCTGCAAAATCCTTATTGTTGCTTACACTTCAAATGTGTTGGCATGTATGAACCCATTTTTTTTTTTGTAAATTGTTTGTTTGAGGATTTTTTCTGCCCGTCTGCAGGGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAA</genome_strand>
        <mrna_strand>AACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266682" ref_strand="+" ref_description="SGN-E266682 [cLEI-5-L15]">
      <seq>aaccaaaccagaatccccaaaaggtcctcttctctttctaccacttgttgggttatcccatagccatatatatatatggcgtcatcagcgaccgtacttcatcattattctcctcgcccttctttctctaccaattcttcttcttcttcgtcatcttcaccttcctcctcctcatcttcttcctcttttgatcaacggcgatgctttaattggaaatttctctgtttttctgggataaacaacatctgtagaagtcaaagctttagagcccatgcaatgagtaccactgaaggaggtgttatgtctccgaaagtcttgatggatactggggatgaacctgaacatcttctagtccttgttcatggcatcttagcaaggtagggagttttgtttgctcatcctggaaggatgctttcacgtgtctacaaagtttatatacatgtgtgtagatatatgtatgtacatgcaattgaaaaaaaaatgtaatggaaagtgaacatgatatctcgcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84296" stop="79660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83999" g_stop="83768" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80240" g_stop="79960" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="513" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E266682" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83999" e_stop="83768"/>
          <exon e_start="80240" e_stop="79960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTA-CACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTGGTAAATCTTTTCATTTCTCTATCTCTTTCTTTTTGACTTTGCAAATTGATCCAACTTCGATTTTTTTGTCTATTGAATTGAAATTGAGTGAACCCCTTTGTCTATTGAATTGAAATTTGTGCCTATTTTGGATCGTTTCTATTTTAATTAGTAGATTAATTGATTCCTGTTTATGATTTGTCTGATTTATCTTGAAAAAGAAGTTACGGGTGTTTTCAGTGCATATTGATTGGTTTGGTGGTTGAGTACTGAAGTTAATTGTAATGAAGATGGATAGAAATGCTAAAATACACAATCAAACCCTTTCTTATTGAGCAATTTGATTTTATCTCAAAGTAGAGTGTTGAATAAAAAAAGGGAGTAGCTCGTAGATATTTGCAGGTCAGATATGGAAAAATTATCACTGAATCAATAGTTCTAGATTGATTTTTCCTGTTCTTACGGATTTTTGGAGTTGTCTAATGTGAAAGAGGGACTACCATTTGGATTTGCCATCTCTTAAGGTTTCTTTTTTGGACACTTATATTGCGAAGGAAATGAAAGGGAAGTCGTATTTTATATTAACTTCTTGATTCTAAGGTGAGAGGACCTTGCACTGGACATTTAGTTGATTTCTTGCGGTAGAAATCACTTTAGAGATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTGTTGGAGAGTGCAATGGCTTTTGAATTGGATTGAACTGACCATGAGCTTGCAACTATTGGAGAGTGCAATGTAATTAACTTTCCAATCAAATATTTGGGGCTCCTGCTAGTGGAAAGGTTCAAATTGGGGAAATGTGGTCACCGGTGGTTCAAAATTTTTGGGTAGAAGAAAATCTACTTACAAAAAGTTGGATAAGATCATTTTAATAAAGGCAACATTATCAAATACCAACCCACGTGATATCCTCATTTCTTATCTTTGTTTCAGTTAGTATGAGATTGGAGAAATTAATGGTAACTTTTCTCTGGGATGGTACAAAAGGGAAAAGAAAGTATCATCTTGTGATTTTTTTAATGACAAGGGAAACCCGCAGCCGCTGTCCTTTGGGTGTGCACAAGGTAAAACCCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGTGGTAACCGCACTAGGCAAGCCCCGTGCGACGAGCTCGATCTAGAAGACAAACCCTTGCTTTCGCTGGCAAGGAGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCGAAAGGGTAGTACCATCTTGTGAATTGGGAAAGGGTATGACCCACCATTGGAAGTAGTAGGGGTTGGGAAAATTGGATGCTAGATATCTTAAAAAGATCATTGTCAGGAAAATTGTTATGGAGATTTGCCAACAAAGGGGGAGGTATGTGGAAGTATAAATAAGGTGGTGACCAATATTGGTAGTTCGTGAAGGAAGTAACGCCATCTTATAGGAAAAATCGATGGAAGGAATGAAGCACAAGATGGACTTTTGCAAAGTTCATGGAATATCAAAATCTGAAATATGAATCCAGTTCAGTTCTGGCTAAACTGCTGATGTGGGATAACACTTTGAAAGATGACTTCCTACACCTGGGCCCTGGCTGGCAACAAGGAGGTTGTAGTAGCTGAGATCCTAGAACTCACGGACACATTTATTTTGGAATATAACTTCTAAAGGACCACTACAGTATTGAGAATATGACAAGGTGGAGCTGTTTCTACTGAGGTTGTATATTCACGCATAATACAGGAAAACAGGTGGTATGATTTGAGAGGGATGCCTTGGAAGCACTGCATTGTCAAACCGTATTATAGGCTATGTTGCTCGGACTCTTCAAAAGTTTCATCTGGTGCATGGTGGATCCTTCAAAAGTTGTGCAATTTTGGAGGATTTGACACGGGTGTGGTCGGAGCAACTTAGATTATAGGTACTGAATCAGAGAAGGGGAGTTCAAGCTCAGAAGTCAGACCTTTGTGGAGAGGTTTATGAAAGACAAGGCAGCAAAGGAGATGTCATTCTTCATCAAGTTACGCAACTTAAGAAGCAATATTGGTTGTGGCCAATAAAAAGAGAGATTGTATAACAATTTTATCAATAGCAAAAAGAACAAAAAAGCTCTAAGGTACATTGCGCCTTTAGGCGCAAATAAAACATGGGTTTAAATGGAAAAAAGTGCAAGGGGAGAAACAGGACAAATACATACTCCACCTGTCCCAATTTATGTGACATACTTTTGTTTTTAGTCAGTCTCAAAAAGAACGATATATTTTCATATTTAGTAATAATTTAACTTTAAAATATCCATTTTACCCTTAATGAGATGTCTATGACTTGTTTTAGATCACAAATTTCAAAAGTCTTTCTTTCTTTAACTCCATGCCAAGTCAAAGAACATCACATAGATTGGGTTGGAGGGAATTTATTTGTTTAGTCCAAGACTAATAATTATAAGCATGAATGACAGATATATTTTGTACTTTTGCAAAGACACTTACCATCCCCATACCACACTTGTGTGATTACACTGGGTTTGCTGTTATACTTTTGCAAAGACAACACTGTTTTGATGCATTTTTTATGCAATTTTTGGGGAAAAAAAGGTCAAGATATAGAGATACTTGCATGATAATTTTCTAAGTCACCAAATTCTTAATTTTAGACTGAAATATTATACAAATTTTAGTCAACATTTAAAAGAATTTCAAAGTTGGAATATTTTAGGACGTATCGGATGGACAATTCAAGGTGTAAGGTGGCGAACAACTCAAGGTGTAAAGAGTGAAGGGAGTGAACTACTAAGGTGTAAAGAGTGGAATGGATGAGTGCCTTGAGAAGTTAAGAGGCTGCCTCACCCTTAGTCTTGTGCAAATATTAGCTTCACCTTTGAGACATTGGTCAGCACGTAAGTGATTATGCTATTGTTTAATCAACTGGTGAGAAGGATATGTTTTAGTCATTGCCATATTGCTTGTGCTTATATAGTGGGAGCTGTTACTTGCTTCTATCCAATCCCTTACCTGAGGTTGCAATTTTAATAGCTCCATCTTACATATACTAGTCATTAGGGTTGAAACTGCTCCATTTTTTTCTAAATTTCCTGTTTCCACTTGAAGTTATCACTATTTCACCAACTTTTAGACTGAAGTTTGCTTTTTAGACAAATCATTACTGTTTGTTCAGTGCTTATATTCCAGACTAGAGCCATAGAATCTGCTCTACATTCTCCTGGTGGATTGTGCAATTGGAAATGATTTCATAAAAGGTTATGTCATTTATGCTCTTGTAGTGCCCTTGGTGAACATGTTTAGTCTCCTCTCTGGATTCTGATTGCAGTCAACTGTTTTCTGAATTTTGAATAGCCATGTAGTATATCTGAGTTAGTACATAGTTTTTTGCGTTCTTCTGCAAAATCCTTATTGTTGCTTACACTTCAAATGTGTTGGCATGTATGAACCCATTTTTTTTTTTGTAAATTGTTTGTTTGAGGATTTTTTCTGCCCGTCTGCAGGGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAG</genome_strand>
        <mrna_strand>AACCA-AACCAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACCACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACCGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACCACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363479" ref_strand="+" ref_description="SGN-E363479 [cLPP-4-F5]">
      <seq>gacaaacaaagaaaggtgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctacaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84458" stop="86332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84758" g_stop="85035" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86032" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="426" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E363479" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84758" e_stop="85035"/>
          <exon e_start="85885" e_stop="86032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACAAAGAAAGGTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAG</genome_strand>
        <mrna_strand>GACAAACAAAGAAAGGTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTACAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364916" ref_strand="+" ref_description="SGN-E364916 [cLPP-17-E9]">
      <seq>agaaaggtgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccaggcctaaacgattttaaattgaattacaataacattaagagtctatttggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84467" stop="86587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84767" g_stop="85035" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86287" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="672" r_length="403" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E364916" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84767" e_stop="85035"/>
          <exon e_start="85885" e_stop="86287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCG</genome_strand>
        <mrna_strand>AGAAAGGTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTGAATTACAATAACATTAAGAGTCTATTTGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360461" ref_strand="+" ref_description="SGN-E360461 [cLPP-8-A2]">
      <seq>gtgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccatggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccaggcctaaacgattttaaattgaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84473" stop="86560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84773" g_stop="85035" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86260" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="639" r_length="376" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E360461" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84773" e_stop="85035"/>
          <exon e_start="85885" e_stop="86260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTAC</genome_strand>
        <mrna_strand>GTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAA-AGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCATGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTGAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373988" ref_strand="+" ref_description="SGN-E373988 [TUS-33-O13]">
      <seq>tgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccangcctaaacgattttaaattgaattacaataacattaagagtctatttggatcgacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84474" stop="86595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84774" g_stop="85035" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86295" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="673" r_length="411" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E373988" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84774" e_stop="85035"/>
          <exon e_start="85885" e_stop="86295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCGACTTTTGA</genome_strand>
        <mrna_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCANGCCTAAACGATTTTAAATTGAATTACAATAACATTAAGAGTCTATTTGGATCGACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362908" ref_strand="+" ref_description="SGN-E362908 [cLPP-2-P6]">
      <seq>tgctttctaacttctattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84474" stop="86521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84774" g_stop="85035" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86221" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="599" r_length="337" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E362908" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84774" e_stop="85035"/>
          <exon e_start="85885" e_stop="86221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAA</genome_strand>
        <mrna_strand>TGCTTTCTAACTTCTATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363277" ref_strand="+" ref_description="SGN-E363277 [cLPP-4-A12]">
      <seq>tgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccanggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84474" stop="86433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84774" g_stop="85035" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86133" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="511" r_length="249" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E363277" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84774" e_stop="85035"/>
          <exon e_start="85885" e_stop="86133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTG</genome_strand>
        <mrna_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCANGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360935" ref_strand="+" ref_description="SGN-E360935 [cLPP-13-E18]">
      <seq>tgctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84474" stop="86325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84774" g_stop="85035" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86025" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="403" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E360935" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84774" e_stop="85035"/>
          <exon e_start="85885" e_stop="86025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGA</genome_strand>
        <mrna_strand>TGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360465" ref_strand="+" ref_description="SGN-E360465 [cLPP-8-A22]">
      <seq>gctttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaagaaatggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84475" stop="86506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84775" g_stop="85035" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86206" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="583" r_length="322" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E360465" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84775" e_stop="85035"/>
          <exon e_start="85885" e_stop="86206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATA</genome_strand>
        <mrna_strand>GCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAAGAAATGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360286" ref_strand="+" ref_description="SGN-E360286 [cLPP-8-C5]">
      <seq>tttctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtctcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccaggcctaaacgattttaaattgaattacaataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84477" stop="86569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84777" g_stop="85035" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86269" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="644" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E360286" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84777" e_stop="85035"/>
          <exon e_start="85885" e_stop="86269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACT</genome_strand>
        <mrna_strand>TTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAGAAAAA-GGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTCTCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTGAATTACAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361941" ref_strand="+" ref_description="SGN-E361941 [cLPP-11-M1]">
      <seq>ggtctaacttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccanggaattatcaagagttacactgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84479" stop="86402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84777" g_stop="85035" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86102" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="477" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E361941" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84777" e_stop="85035"/>
          <exon e_start="85885" e_stop="86102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAGAGAA-ATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACT</genome_strand>
        <mrna_strand>GGTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCANGGAATTATCAAGAGTTACACTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363702" ref_strand="+" ref_description="SGN-E363702 [cLPP-3-A9]">
      <seq>ttcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84485" stop="86523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84785" g_stop="85035" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86223" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="590" r_length="339" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E363702" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84785" e_stop="85035"/>
          <exon e_start="85885" e_stop="86223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAG</genome_strand>
        <mrna_strand>TTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360425" ref_strand="+" ref_description="SGN-E360425 [cLPP-8-A15]">
      <seq>tcgattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccaaggaattatcaagagttacactgactagcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84486" stop="86411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84786" g_stop="85035" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86111" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="477" r_length="227" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E360425" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84786" e_stop="85035"/>
          <exon e_start="85885" e_stop="86111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAAT</genome_strand>
        <mrna_strand>TCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAAGGAATTATCAAGAGTTACACTGACTAGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364570" ref_strand="+" ref_description="SGN-E364570 [cLPP-18-H18]">
      <seq>gattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatatttttagagaaaaaggaggaagaaaaaatgggaaaatcaataattatctttattgctagtgctatttgcttgttctccctattagggattactcaagccaatgaagaatctgataagtatcaatttattctagaaggaatagtgtattgtgatccttgtcgttcaatattcaaaaccaatcttagtgagccagttgtagatgcgagggtggggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84488" stop="86451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84788" g_stop="85035" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85885" g_stop="86151" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="515" r_length="267" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E364570" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84788" e_stop="85035"/>
          <exon e_start="85885" e_stop="86151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAG-AGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAGGTATGTTTTTTTAAGAAATACTTTTTCAAATAATATTGTTATTATTGGATCAATTTTTAGAGTATATTTAATACAAAATTATCATTTTAAGAGCATTTATAGGTAAGTTAGCAAATTATTATGATGGTGGGATAGAATGCGATTGTGGGTTTCAAGAAGAGTAGAGAAGAGATAATGAGCTTATTTTTTTTAATTTTATCTTTATTAGAAAAGTTGTTTTCCTCGTTAAGAAATTTGTTTTTTTCTAGAGATAATTGGACAAATTTAAAAAAATTTCCTTCCTACATGACACATGTCTTCTCTGGAGAGATAAAACATTGATAAAAGGTAATTAAGACAACTAGTTTTAAAGGTTGTTGCTTTTGATGGATTAATTGACTTGTCCAATATAATTTATTTCGTGTTTGATTGAGATTATAATCTAAAATTAGGAAAAAGTTATACCACGATTTAAGATTATCTATCATATATATAATAAATTAGTAGGTAGAAAATTCTAGTTCATTCTAATTATCATCTCAAGATATATATTCCGTTTAAAATTATTAAAGCTATTAAGGCCTTATTTAGATGGACATACAGATTGTTGCCTTATCTTTTTTGTCTTTTATGAAAAAATTAATAACAAAAGTTTAAATTTTTACGTTAAAAAAAAAACTCTTTTTAAAAGCCAATTTAAACAAACTATATATGTCTTTCAAAAGAAGTGCACAAAAATGATAAAAGTTGCATATAAATTCATAGTTGGAGTTGAAAATAATAATTTATGTTGGTGAATAAATGAGTTCATTTGTAAATTGTAATGTTTAGATTTGCACTAAACAATTTAATTTGTATGTACACATGCAGATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTT</genome_strand>
        <mrna_strand>GATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATATTTTTAGAG-AAAAAGGAGGAAGAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTAGAAGGAATAGTGTATTGTGATCCTTGTCGTTCAATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAGGGTGGGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363136" ref_strand="+" ref_description="SGN-E363136 [cLPP-19-M18]">
      <seq>gattttgcaacctgcagaaagaaacaaggaaaggccaaatatatatatttttttagagaaaaaggaggaataaaaaatgggaaaatcaataattatctttattgctagtgctatatgcttgatctccctattagggattactcaagccaacgaagaatctgataagtatcaatttattctagaaagaatagtgtattgtgatccttgtctatcaatattcaaaaccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="84488" stop="85317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84788" g_stop="85017" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E363136" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84788" e_stop="85017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAA-GAGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATC</genome_strand>
        <mrna_strand>GATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAATATATATATTTTTTTAGAG-AAAAAGGAGGAATAAAAAATGGGAAAATCAATAATTATCTTTATTGCTAGTGCTATATGCTTGATCTCCCTATTAGGGATTACTCAAGCCAACGAAGAATCTGATAAGTATCAATTTATTCTAGAAAGAATAGTGTATTGTGATCCTTGTCTATCAATATTCAAAACCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373987" ref_strand="+" ref_description="SGN-E373987 [TUS-33-O13](-)">
      <seq>ccagttgtagatgcgagggtggggatgcaatgccaacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccaggcctaaacgattttaaattgaattacaataacattaagagtctatttggatcgacttttgacttcatagctaaaatctctaactgatgacttttagcttatttttatcatatagtttacagtcaaattttaataaactctaaaaaaataattaaaataagtcaattcaaacagattctaaatattgtcttacatttaatttatttgttctgtcattaattttgcatctatatatatacaaactttaattaaggacgatatggtcatttaatcatttttatgtaattttgtgttggtttgaattttgattttgaggcttgagaggttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="85576" stop="86861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85885" g_stop="86570" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="695" r_length="685" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E373987" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85885" e_stop="86570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCGACTTTTGACTTCATCGCTAAAATCTCTAACTTATGATTTTTAGTTTATTTTTATCATATAGTTTTAAAGTCAAATTTTAATAAGCTCTAAAAAAGTAATTAAAATAAGTCAATTCAAACAGATTCTAAATATTATCTTACATTTATTTTATTTGTTCTGTCATTAATTTTGCATCTATATATATACAAACTTTAATCAAGGACGATATGGTCATTTAATCATTTTTATGTAATTTTGTGTTAGTTTGTATTTTGATTTTGAGGCTTGAGAGGTTCCTAAACTT</genome_strand>
        <mrna_strand>ATGCGAGGGTGGGGATGCAATGCCAACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTGAATTACAATAACATTAAGAGTCTATTTGGATCGACTTTTGACTTCATAGCTAAAATCTCTAACTGATGACTTTTAGCTTATTTTTATCATATAG-TTTACAGTCAAATTTTAATAAACTCTAAAAAAATAATTAAAATAAGTCAATTCAAACAGATTCTAAATATTGTCTTACATTTAATTTATTTGTTCTGTCATTAATTTTGCATCTATATATATACAAACTTTAATTAAGGACGATATGGTCATTTAATCATTTTTATGTAATTTTGTGTTGGTTTGAATTTTGATTTTGAGGCTTGAGAGGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361987" ref_strand="+" ref_description="SGN-E361987 [cLPP-11-D13]">
      <seq>gggatgcaatgccgacaccctgaaactgaacgagtcacaataaccgtgacagcctcgactaactccactggatattaccacatgttgattgaaggtgatcacgagaacgaaatctgcgagacatatttgataaaaagtccaaaagaagattgcagtgagatcccaactgaaggacataccagggaattatcaagagttacactgactagcaaaaatggcattgctggaaagaatcgtgaatccaacccactctttttcttgaccaaaaaagtagcaccagaatgtcaacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccaggcctaaacgattttaaattgaattacaataacattaagagtctatttggatcgacttttgacttcatagctaaaatctctaactgatgacttttagcttatttttatcatatagtttacagtcaaattttaataaactctaaaaaaataattaaaataagtcaattcaaacagattctaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="85596" stop="86718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85896" g_stop="86417" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="535"/>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E361987" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85896" e_stop="86417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCGACTTTTGACTTCATCGCTAAAATCTCTAACTTATGATTTTTAGTTTATTTTTATCATATAGTTTTAAAGTCAAATTTTAATAAGCTCTAAAAAAGTAATTAAAATAAGTCAATTCAAACAGATTCTAAAT</genome_strand>
        <mrna_strand>GGGATGCAATGCCGACACCCTGAAACTGAACGAGTCACAATAACCGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTGAATTACAATAACATTAAGAGTCTATTTGGATCGACTTTTGACTTCATAGCTAAAATCTCTAACTGATGACTTTTAGCTTATTTTTATCATATAG-TTTACAGTCAAATTTTAATAAACTCTAAAAAAATAATTAAAATAAGTCAATTCAAACAGATTCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362083" ref_strand="+" ref_description="SGN-E362083 [cLPP-11-K17]">
      <seq>gggatgcaaggcccacaccctgaaactgagcgagtcacaataaccgtgacagcctttactaactccactggatattaccacatgttgattgaaggtgatcacgacaacgaaatctgctagacatatttgataaaaagtccaaaagaagattgcagcgagatcccaactgaaggacataccaaggaattatcaagagttacactgactatccaaaatggcattgctggaaagaatacggaattcaacccactctttttcttgaccaaaaaagtagcaccagaatgtgcacaagaattcaaggaaatggaatatctccctgaacttaaagatattaaccacgcctgaacgattttaaattgaattacaatgacattaacagtctatgtggatcgacttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="+" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="85596" stop="86596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85896" g_stop="86296" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="+" ref_id="SGN-E362083" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85896" e_stop="86296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCGACTTTTGAC</genome_strand>
        <mrna_strand>GGGATGCAAGGCCCACACCCTGAAACTGAGCGAGTCACAATAACCGTGACAGCCTTTACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCACGACAACGAAATCTGCTAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGCGAGATCCCAACTGAAGGACATACCAAGGAATTATCAAGAGTTACACTGACTATCCAAAATGGCATTGCTGGAAAGAATACGGAATTCAACCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTGCACAAGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCACGCCTGAACGATTTTAAATTGAATTACAATGACATTAACAGTCTATGTGGATCGACTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267211" ref_strand="+" ref_description="SGN-E267211 [cLEI-4-M4]">
      <seq>gtcccatctctcaaggcatcaaattgtttggtgcaacaatagaaattcaagaaaaacaagccaaagctactcatcaaccaacaaacaaagttgttgttgatgatgatgatgataatgatcaagaaaaaaggccagacaagatcatcccttgccctagatgtaaaagcatggaaacaaaattttgttacttcaacaactacaatgttaaccaacctagacacttctgcaaaggttgtcagagatattggacggccggtggagccctacggaacgtgcccgtaggagccggccgtcgcaaagccaagccaccatgcgggcccggcccgcatggcgacttggctgacggttgtaatctatttgatgtggctaatcagcttgactttgatggatcagtggtggctcatgaagatcaatggcatctttttccggcagctaagaggaggagaagcacctccgatagccaatcttattgattccctctttgtcgtttagtaattatatattttatgtacgtggaattagtaaatggttaattaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122E16-VRrz1/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0122E16.1" temp_strand="-" temp_description="C02HBa0122E16.1  AC215388.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122E16 sequenced_by:kribb upload_account_name:korea">
        <position start="91438" stop="90291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91138" g_stop="90590" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122E16.1" gen_strand="-" ref_id="SGN-E267211" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91138" e_stop="90590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCATCTCTCAAGGCATCAAATTGTTTGGTGCAACAATAGAAATTCAAGAAAAACAAGCCAAAGCTACTCATCAACCAACAAACAAAGTTGTTGTTGATGATGATGATGATAATGATCAAGAAAAAAGGCCAGACAAGATCATCCCTTGCCCTAGATGTAAAAGCATGGAAACAAAATTTTGTTACTTCAACAACTACAATGTTAACCAACCTAGACACTTCTGCAAAGGTTGTCAGAGATATTGGACGGCCGGTGGAGCCCTACGGAACGTGCCCGTAGGAGCCGGCCGTCGCAAAGCCAAGCCACCATGCGGGCCCGGCCCGCATGGCGACTTGGCTGACGGTTGTAATCTATTTGATGTGGCTAATCAGCTTGACTTTGATGGATCAGTGGTGGCTCATGAAGATCAATGGCATCTTTTTCCGGCAGCTAAGAGGAGGAGAAGCACCTCCGATAGCCAATCTTATTGATTCCCTCTTTGTCGTTTAGTAATTATATATTTTATGTACGTGGAATTAGTAAATGGTTAATTAATTAAAAAAAAAG</genome_strand>
        <mrna_strand>GTCCCATCTCTCAAGGCATCAAATTGTTTGGTGCAACAATAGAAATTCAAGAAAAACAAGCCAAAGCTACTCATCAACCAACAAACAAAGTTGTTGTTGATGATGATGATGATAATGATCAAGAAAAAAGGCCAGACAAGATCATCCCTTGCCCTAGATGTAAAAGCATGGAAACAAAATTTTGTTACTTCAACAACTACAATGTTAACCAACCTAGACACTTCTGCAAAGGTTGTCAGAGATATTGGACGGCCGGTGGAGCCCTACGGAACGTGCCCGTAGGAGCCGGCCGTCGCAAAGCCAAGCCACCATGCGGGCCCGGCCCGCATGGCGACTTGGCTGACGGTTGTAATCTATTTGATGTGGCTAATCAGCTTGACTTTGATGGATCAGTGGTGGCTCATGAAGATCAATGGCATCTTTTTCCGGCAGCTAAGAGGAGGAGAAGCACCTCCGATAGCCAATCTTATTGATTCCCTCTTTGTCGTTTAGTAATTATATATTTTATGTACGTGGAATTAGTAAATGGTTAATTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="933" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="933" e_stop="735"/>
            <exon e_start="660" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="933" e_stop="735" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="734" i_stop="661" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="660" e_stop="1" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="933" stop="735"/>
              <exon start="660" stop="118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="567" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTG : GATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAA</gDNA_template>
            <first_frame> E  F  A  D  I  T  S  Q  E  F  L  A  K  F  T  G  L  N  I  P  N  S  Y  L  S  P  S  P  M  S  S  T  E  F  K  K  I  N  D  L  S  D  D  Y  M  P  S  N  L  D  W  R  E  S  G  A  V  T  Q  V  K  H  Q  G  R  C   : G  C  C  W  A  F  S  A  V  G  S  L  E  G  A  Y  K  I  A  T  G  N  L  M  E  F  S  E  Q  E  L  L  D  C  T  T  N  N  Y  G  C  N  G  G  F  M  T  N  A  F  D  F  I  I  E  N  G  G  I  S  R  E  S  D  Y  E  Y  L  G  Q  Q  Y  T  C  R  S  Q  E  K  T  A  A  V  Q  I  S  S  Y  Q  V  V  P  E  G  E  T  S  L  L  Q  A  V  T  K  Q  P  V  S  I  G  I  A  A  S  Q  D  L  Q  F  Y  A  G  G  T  Y  D  G  N  C  A  D  R  I  N  H  A  V  T  A  I  G  Y  G  T  D  E  E  G  Q  K  Y  W  L  L  K  N  S  W  G  T  S  W  G  E  N  G  Y  M  K  I  I  R  D  S  G  D  P  S  G  L  C  D  I  A  K  M  S  S  Y  P  N  I  A  *  H  R  *  A  S  I  S  Y  M  L  L  Y  Y  *  E  L  R  G  K  N  I  D  C  V  H  A  </first_frame>
            <second_frame>  N  L  Q  I  L  L  H  K  S  F  W  L  N  L  L  D  *  T  Y  L  I  H  I  F  H  L  L  Q  C  H  Q  R  N  L  K  K  L  M  I  L  A  M  I  T  C  R  L  T  W  T  G  E  S  L  G  L  S  L  K  *  N  I  K  V  D  V  :  D  V  A  G  R  F  L  Q  L  D  H  *  K  E  P  T  K  L  Q  Q  A  T  *  W  N  S  L  N  R  N  F  S  I  A  P  P  T  I  M  A  A  T  E  V  L  *  R  M  H  S  I  L  S  *  K  M  V  E  F  Q  G  N  Q  I  M  N  T  *  V  N  S  T  H  A  E  A  K  R  K  Q  Q  Q  C  K  *  V  V  I  K  S  C  L  K  V  K  H  H  Y  Y  K  P  *  L  N  S  Q  C  P  L  E  *  L  L  A  K  I  Y  S  F  T  R  E  E  L  M  T  E  T  V  P  I  E  L  T  M  L  *  Q  R  *  D  M  E  L  M  R  K  V  R  N  I  G  C  *  R  I  H  G  E  Q  V  G  V  R  M  G  I  *  K  L  *  E  I  L  G  I  L  Q  V  F  V  I  S  Q  R  C  L  L  I  Q  T  *  R  S  I  D  K  Q  A  F  L  I  C  C  C  I  I  K  N  *  G  E  K  I  L  I  V  Y  M  Q </second_frame>
            <third_frame>   I  C  R  Y  Y  F  T  R  V  F  G  *  I  Y  W  I  K  H  T  *  F  I  S  F  T  F  S  N  V  I  N  G  I  *  K  N  *  *  S  *  R  *  L  H  A  V  *  L  G  L  E  R  V  W  G  C  H  S  S  E  T  S  R  S  M  W :   M  L  L  G  V  F  C  S  W  I  T  R  R  S  L  Q  N  C  N  R  Q  L  D  G  I  L  *  T  G  T  S  R  L  H  H  Q  Q  L  W  L  Q  R  R  F  Y  D  E  C  I  R  F  Y  H  R  K  W  W  N  F  K  G  I  R  L  *  I  P  R  S  T  V  H  M  Q  K  P  R  E  N  S  S  S  A  N  K  *  L  S  S  R  A  *  R  *  N  I  T  I  T  S  R  N  *  T  A  S  V  H  W  N  S  C  *  P  R  F  T  V  L  R  G  R  N  L  *  R  K  L  C  R  S  N  *  P  C  C  N  S  D  R  I  W  N  *  *  G  R  S  E  I  L  V  V  E  E  F  M  G  N  K  L  G  *  E  W  V  Y  E  N  Y  K  R  F  W  G  S  F  R  S  L  *  Y  R  K  D  V  F  L  S  K  H  S  V  A  *  I  S  K  H  F  L  Y  V  V  V  L  L  R  I  E  G  K  K  Y  *  L  C  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="933" stop="735"/>
                    <exon start="660" stop="80"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFADITSQEFLAKFTGLNIPNSYLSPSPMSSTEFKKINDLSDDYMPSNLDWRESGAVTQVKHQGRCGCCWAFSAVGSLEGAYKIATGNLMEFSEQELLDCTTNNYGCNGGFMTNAFDFIIENGGISRESDYEYLGQQYTCRSQEKTAAVQISSYQVVPEGETSLLQAVTKQPVSIGIAASQDLQFYAGGTYDGNCADRINHAVTAIGYGTDEEGQKYWLLKNSWGTSWGENGYMKIIRDSGDPSGLCDIAKMSSYPNIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9170" PGL_stop="6368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9170" e_stop="9144"/>
            <exon e_start="8856" e_stop="8809"/>
            <exon e_start="8648" e_stop="8523"/>
            <exon e_start="7268" e_stop="7176"/>
            <exon e_start="6956" e_stop="6783"/>
            <exon e_start="6693" e_stop="6368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.794" acc_prob="0.150" e_score="1.000"/>
          <exon-intron don_prob="0.666" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.454" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9170" e_stop="9144" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.794" acc_prob="0.150">
            <gDNA_intron_boundary i_start="9143" i_stop="8857" i_length="287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8856" e_stop="8809" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.666" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8808" i_stop="8649" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8648" e_stop="8523" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.981">
            <gDNA_intron_boundary i_start="8522" i_stop="7269" i_length="1254"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7268" e_stop="7176" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.539">
            <gDNA_intron_boundary i_start="7175" i_stop="6957" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6956" e_stop="6783" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.454" acc_prob="0.992">
            <gDNA_intron_boundary i_start="6782" i_stop="6694" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="6693" e_stop="6368" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9170" stop="9144"/>
              <exon start="8856" stop="8809"/>
              <exon start="8648" stop="8523"/>
              <exon start="7268" stop="7176"/>
              <exon start="6956" stop="6783"/>
              <exon start="6693" stop="6368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9169" stop="9144"/>
              <exon start="8856" stop="8809"/>
              <exon start="8648" stop="8523"/>
              <exon start="7268" stop="7176"/>
              <exon start="6956" stop="6783"/>
              <exon start="6693" stop="6606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTACTTCCATCTGCCCTTCTCTG : GTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG : GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT : CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG : GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG : GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCAATGGCCTTATTTTATAGGAAA</gDNA_template>
            <first_frame> L  F  T  S  I  C  P  S  L  :  V  L  L  G  V  G  E  T  I  S  S  Q  S  C  P  K  :  V  L  L  L  N  G  T  H  D  R  E  T  C  G  L  S  A  S  C  F  V  T  A  I  T  D  A  L  N  R  T  Y  G  D  P  H  N  C  L  K  N  P  :  P  N  K  Y  I  N  T  L  L  V  P  K  N  G  L  I  P  M  D  K  E  S  L  A  S  Q  G  I  F  N  V  :  V  T  V  D  S  F  P  D  P  K  L  G  V  L  F  D  P  K  S  L  I  Q  A  L  S  N  L  L  T  D  A  *  T  *  I  L  L  *  F  V  K  P  *  F  I  R  N  F  G  A  C  G  T  V  V  F  A  T  :  D  L  K  R  N  G  L  F  V  R  T  C  R  S  I  T  I  Q  R  P  L  H  *  F  Q  L  H  E  V  R  R  K  R  V  R  L  P  *  F  H  V  G  I  G  L  D  L  I  Q  L  L  L  G  K  N  I  I  V  H  N  *  A  E  T  N  L  M  F  R  I  W  A  R  T  D  Q  *  N  F  F  Q  P  Q  F  V  W  N  *  S  V  M  A  V  V  H  N  K  I  S  F  H  Q  W  P  Y  F  I  G   </first_frame>
            <second_frame>  S  L  L  P  S  A  L  L  W :   F  Y  L  E  W  G  K  P  S  L  H  S  L  V  P  R :   Y  F  C  *  M  V  L  M  I  E  K  L  V  A  L  V  L  L  A  L  *  L  P  L  P  M  P  *  I  E  L  M  E  I  L  I  I  V  L  K  I  L :   Q  T  N  I  S  T  P  F  W  C  R  K  T  D  *  Y  L  W  I  K  K  A  W  L  L  K  E  F  S  M  W :   S  R  W  I  P  F  L  I  Q  N  W  V  C  F  L  I  P  N  H  *  F  K  H  F  P  I  C  *  R  M  H  E  P  E  F  Y  Y  D  L  L  N  L  N  L  S  E  I  L  E  L  V  A  Q  *  F  S  Q  R :   I  *  R  E  T  G  C  L  *  E  L  V  D  R  *  Q  F  K  D  L  C  I  D  F  N  S  M  K  S  E  G  R  G  *  G  F  H  S  F  T  L  A  L  A  *  I  L  F  S  S  Y  W  E  R  I  S  L  F  T  I  E  L  K  Q  I  *  C  F  V  F  G  H  V  Q  I  N  E  I  F  S  N  L  S  L  F  G  I  E  A  *  W  L  L  Y  I  I  K  F  L  F  I  N  G  L  I  L  *  E  </second_frame>
            <third_frame>   L  Y  F  H  L  P  F  S   : G  F  T  W  S  G  G  N  H  L  F  T  V  L  S  Q   : G  T  S  V  E  W  Y  S  *  S  R  N  L  W  P  *  C  F  L  L  C  D  C  H  Y  R  C  L  K  S  N  L  W  R  S  S  *  L  S  *  K  S   : S  K  Q  I  Y  Q  H  P  F  G  A  E  K  R  I  N  T  Y  G  *  R  K  P  G  F  S  R  N  F  Q  C   : G  H  G  G  F  L  S  *  S  K  I  G  C  A  F  *  S  Q  I  I  D  S  S  T  F  Q  S  V  D  G  C  M  N  L  N  S  T  M  I  C  *  T  L  I  Y  Q  K  F  W  S  L  W  H  S  S  F  R  N   : G  S  E  E  K  R  A  V  C  E  N  L  *  I  D  N  N  S  K  T  S  A  L  I  S  T  P  *  S  P  K  E  E  G  K  A  S  I  V  S  R  W  H  W  L  R  S  Y  S  A  L  T  G  K  E  Y  H  C  S  Q  L  S  *  N  K  S  D  V  S  Y  L  G  T  Y  R  S  M  K  F  F  P  T  S  V  C  L  E  L  K  R  N  G  C  C  T  *  *  N  F  F  S  S  M  A  L  F  Y  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9170" stop="9144"/>
                    <exon start="8856" stop="8809"/>
                    <exon start="8648" stop="8523"/>
                    <exon start="7268" stop="7176"/>
                    <exon start="6956" stop="6861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFTSICPSLVLLGVGETISSQSCPKVLLLNGTHDRETCGLSASCFVTAITDALNRTYGDPHNCLKNPPNKYINTLLVPKNGLIPMDKESLASQGIFNVVTVDSFPDPKLGVLFDPKSLIQALSNLLTDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12241" PGL_stop="11703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12241" e_stop="11703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12241" e_stop="11703" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12241" stop="11703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGTTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</gDNA_template>
            <first_frame> A  I  H  N  I  S  F  Q  L  V  I  S  A  *  K  V  I  W  M  P  A  F  C  A  C  *  *  *  G  I  K  E  P  I  H  L  L  *  D  L  F  D  Q  L  H  G  F  L  *  S  I  I  L  G  S  F  Y  N  L  R  F  E  V  I  L  N  N  D  G  Q  T  L  V  L  N  A  K  N  H  G  L  K  V  V  I  S  E  *  L  A  I  *  I  E  *  C  F  H  Q  Q  E  L  Q  L  S  Q  T  P  L  W  G  F  H  *  V  C  C  S  C  *  S  S  T  L  *  L  S  Q  K  *  *  S  *  I  S  I  G  I  *  G  D  D  P  S  R  T  R  L  *  T  V  T  L  K  V  K  I  C  F  L  C  S  K  W  *  I  V  F  V  K  P  F  K  I  S  F  I  C  *   </first_frame>
            <second_frame>  L  F  I  I  S  V  F  N  W  S  *  V  P  E  K  S  F  G  C  L  L  F  V  L  A  N  S  R  E  L  R  N  L  S  T  F  F  E  I  F  L  I  N  Y  T  A  S  Y  N  P  *  S  W  E  V  S  I  I  C  V  L  K  L  S  *  T  M  T  V  K  R  *  C  *  M  L  R  T  M  A  *  K  L  L  S  V  S  N  L  Q  Y  K  L  N  S  V  F  I  S  K  N  C  S  F  L  R  P  H  F  G  D  F  T  R  Y  V  V  L  V  R  V  A  P  C  S  Y  L  R  S  D  E  V  E  F  L  *  E  F  R  V  M  I  L  L  E  Q  G  S  E  Q  *  L  S  K  L  K  S  V  S  C  A  Q  S  G  K  *  C  S  L  N  H  S  K  S  L  L  F  V  D  </second_frame>
            <third_frame>   Y  S  *  Y  Q  F  S  I  G  H  K  C  L  K  S  H  L  D  A  C  F  L  C  L  L  I  V  G  N  *  G  T  Y  P  P  S  L  R  S  F  *  S  I  T  R  L  L  I  I  H  N  L  G  K  F  L  *  F  A  F  *  S  Y  L  K  Q  *  R  S  N  A  S  A  K  C  *  E  P  W  L  E  S  C  Y  Q  *  V  T  C  N  I  N  *  I  V  F  S  S  A  R  I  A  A  F  S  D  P  T  L  G  I  S  L  G  M  L  F  L  L  E  *  H  L  V  V  I  S  E  V  M  K  L  N  F  Y  R  N  L  G  *  *  S  F  *  N  K  A  L  N  S  N  S  Q  S  *  N  L  F  P  V  L  K  V  V  N  S  V  R  *  T  I  Q  N  L  F  Y  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122E16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44017" PGL_stop="44577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44017" e_stop="44577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="44017" e_stop="44577" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44017" stop="44577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTCACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTAGAGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATTAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCATTTTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCTTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAATAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTACTTTTTTAGTCGAAACTCCCAGTGAAATATTGGGGTGAATGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</gDNA_template>
            <first_frame> K  N  S  H  H  Y  W  H  F  *  T  I  T  C  *  H  L  E  S  I  S  N  N  N  S  *  *  L  Q  V  F  H  Y  L  S  R  *  L  *  *  I  Y  L  D  T  T  S  K  L  *  K  Q  C  F  P  C  P  *  S  L  Y  T  H  G  *  E  P  V  Q  H  H  C  *  N  H  *  I  R  *  W  F  G  I  H  *  Q  *  N  H  F  I  F  S  I  Q  R  D  H  P  S  E  I  L  P  L  Y  S  S  T  K  W  C  G  R  N  K  A  Q  I  Y  S  *  N  S  K  G  S  T  F  L  V  E  T  P  S  E  I  L  G  *  M  Y  T  C  F  H  I  S  Y  K  *  T  T  F  F  S  S  P  Q  *  N  S  I  *  N  F  I  *  T  Q  T  Y  L  L  S  P  K  E  F  W  M  F  M  L  S  Y  Y </first_frame>
            <second_frame>  K  T  H  T  T  T  G  I  F  E  L  L  H  V  D  I  *  S  P  Y  Q  T  T  T  H  D  N  F  K  Y  F  I  T  L  V  D  D  F  S  K  S  T  W  T  Q  L  L  S  C  K  S  N  A  F  H  V  L  K  A  F  I  L  M  V  E  N  Q  F  S  T  T  V  K  T  I  R  S  D  N  G  L  E  F  T  S  N  E  T  I  L  F  F  Q  S  K  G  I  I  H  Q  K  S  C  P  Y  T  P  Q  Q  N  G  V  V  E  I  K  H  K  Y  I  L  E  T  A  R  A  L  L  F  *  S  K  L  P  V  K  Y  W  G  E  C  I  L  A  S  T  Y  L  I  N  R  L  P  S  F  P  L  H  N  K  T  P  Y  E  I  L  Y  K  H  K  P  I  Y  S  H  L  K  S  F  G  C  L  C  Y  P  T   </second_frame>
            <third_frame>   K  L  T  P  L  L  A  F  L  N  Y  Y  M  L  T  S  R  V  H  I  K  Q  Q  L  M  I  T  S  S  I  S  L  P  *  *  M  T  L  V  N  L  P  G  H  N  F  *  A  V  K  A  M  L  S  M  S  L  K  P  L  Y  S  W  L  R  T  S  S  A  P  L  L  K  P  L  D  Q  I  M  V  W  N  S  L  A  M  K  P  F  Y  F  F  N  P  K  G  S  S  I  R  N  L  A  P  I  L  L  N  K  M  V  W  S  K  *  S  T  N  I  F  L  K  Q  Q  G  L  Y  F  F  S  R  N  S  Q  *  N  I  G  V  N  V  Y  L  L  P  H  I  L  *  I  D  Y  L  L  F  L  S  T  I  K  L  H  M  K  F  Y  I  N  T  N  L  S  T  L  T  *  R  V  L  D  V  Y  V  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44069" stop="44407"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETILFFQSKGIIHQKSCPYTPQQNGVVEIKHKYILETARALLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="73685" PGL_stop="72852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73685" e_stop="73548"/>
            <exon e_start="73451" e_stop="73354"/>
            <exon e_start="73275" e_stop="73072"/>
            <exon e_start="72863" e_stop="72852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.899" e_score="0.990"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73685" e_stop="73548" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.949">
            <gDNA_intron_boundary i_start="73547" i_stop="73452" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73451" e_stop="73354" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73353" i_stop="73276" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="73275" e_stop="73072" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.899">
            <gDNA_intron_boundary i_start="73071" i_stop="72864" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="72863" e_stop="72852" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73685" stop="73548"/>
              <exon start="73451" stop="73354"/>
              <exon start="73275" stop="73072"/>
              <exon start="72863" stop="72852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73574" stop="73548"/>
              <exon start="73451" stop="73354"/>
              <exon start="73275" stop="73072"/>
              <exon start="72863" stop="72852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTAGTAGATGTGGAGTATTGTCCTCCAGCTTCATGCGAAGGACCTCATTATCCCTTAGAGGCAGCCAAAGCAAAGGAGGCAGCCCAAAATGCACCAAACACACAGAGGACATTGGAATATCATGAAAGCATGGAAG : AGGAAATGATACGTGGCTTGCAACAGTTGGGGTGGAAAAAAATTGATGTCAGCTTTCACTCAGCATTCTGGCCCTTTTTTGCGCATAACAATATCCAT : GTGAAGAATGAGTTTTTTCACAATGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGATGCAATCCGAATCGACCTCCTTAATTACTCCTAGCTTGTAACTCATATAGTAGAAAGCAATCCAGCGTACATTTAAATGAAATCAAAACACTATCATTGATTGGAAATGTATATTTCTCAGAAAACTA : GAAAAGTAAAAC</gDNA_template>
            <first_frame> M  *  *  M  W  S  I  V  L  Q  L  H  A  K  D  L  I  I  P  *  R  Q  P  K  Q  R  R  Q  P  K  M  H  Q  T  H  R  G  H  W  N  I  M  K  A  W  K  :  R  K  *  Y  V  A  C  N  S  W  G  G  K  K  L  M  S  A  F  T  Q  H  S  G  P  F  L  R  I  T  I  S  M :   *  R  M  S  F  F  T  M  L  E  *  E  *  L  L  M  S  Q  T  T  *  S  N  K  R  C  N  P  N  R  P  P  *  L  L  L  A  C  N  S  Y  S  R  K  Q  S  S  V  H  L  N  E  I  K  T  L  S  L  I  G  N  V  Y  F  S  E  N  * :   K  S  K   </first_frame>
            <second_frame>  C  S  R  C  G  V  L  S  S  S  F  M  R  R  T  S  L  S  L  R  G  S  Q  S  K  G  G  S  P  K  C  T  K  H  T  E  D  I  G  I  S  *  K  H  G  R :   G  N  D  T  W  L  A  T  V  G  V  E  K  N  *  C  Q  L  S  L  S  I  L  A  L  F  C  A  *  Q  Y  P   : C  E  E  *  V  F  S  Q  C  W  S  R  S  N  C  S  C  R  R  P  H  K  A  T  R  D  A  I  R  I  D  L  L  N  Y  S  *  L  V  T  H  I  V  E  S  N  P  A  Y  I  *  M  K  S  K  H  Y  H  *  L  E  M  Y  I  S  Q  K  T   : R  K  V  K  </second_frame>
            <third_frame>   V  V  D  V  E  Y  C  P  P  A  S  C  E  G  P  H  Y  P  L  E  A  A  K  A  K  E  A  A  Q  N  A  P  N  T  Q  R  T  L  E  Y  H  E  S  M  E   : E  E  M  I  R  G  L  Q  Q  L  G  W  K  K  I  D  V  S  F  H  S  A  F  W  P  F  F  A  H  N  N  I  H  :  V  K  N  E  F  F  H  N  A  G  V  G  V  I  A  H  V  A  D  H  I  K  Q  Q  E  M  Q  S  E  S  T  S  L  I  T  P  S  L  *  L  I  *  *  K  A  I  Q  R  T  F  K  *  N  Q  N  T  I  I  D  W  K  C  I  F  L  R  K  L  :  E  K  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73683" stop="73548"/>
                    <exon start="73451" stop="73354"/>
                    <exon start="73275" stop="73159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVDVEYCPPASCEGPHYPLEAAKAKEAAQNAPNTQRTLEYHESMEEEMIRGLQQLGWKKIDVSFHSAFWPFFAHNNIHVKNEFFHNAGVGVIAHVADHIKQQEMQSESTSLITPSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83999" PGL_stop="76253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83859" e_stop="83768"/>
            <exon e_start="80240" e_stop="80096"/>
            <exon e_start="79220" e_stop="79153"/>
            <exon e_start="78996" e_stop="78926"/>
            <exon e_start="78191" e_stop="77928"/>
            <exon e_start="76572" e_stop="76409"/>
            <exon e_start="76320" e_stop="76253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.944" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.618" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="83859" e_stop="83768" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80240" e_stop="80096" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.759">
            <gDNA_intron_boundary i_start="80095" i_stop="79221" i_length="875"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79220" e_stop="79153" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.752">
            <gDNA_intron_boundary i_start="79152" i_stop="78997" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78996" e_stop="78926" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78925" i_stop="78192" i_length="734"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78191" e_stop="77928" e_length="264"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.618">
            <gDNA_intron_boundary i_start="77927" i_stop="76573" i_length="1355"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76572" e_stop="76409" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.905">
            <gDNA_intron_boundary i_start="76408" i_stop="76321" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76320" e_stop="76253" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83859" stop="83768"/>
              <exon start="80240" stop="80096"/>
              <exon start="79220" stop="79153"/>
              <exon start="78996" stop="78926"/>
              <exon start="78191" stop="78008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83800" stop="83768"/>
              <exon start="80240" stop="80096"/>
              <exon start="79220" stop="79153"/>
              <exon start="78996" stop="78926"/>
              <exon start="78191" stop="78053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80226" stop="80096"/>
              <exon start="79220" stop="79153"/>
              <exon start="78996" stop="78926"/>
              <exon start="78191" stop="77928"/>
              <exon start="76572" stop="76409"/>
              <exon start="76320" stop="76253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80150" stop="80096"/>
              <exon start="79220" stop="79153"/>
              <exon start="78996" stop="78926"/>
              <exon start="78191" stop="77953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79181" stop="79153"/>
              <exon start="78996" stop="78926"/>
              <exon start="78191" stop="77928"/>
              <exon start="76572" stop="76409"/>
              <exon start="76320" stop="76265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG : GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAG : CCCAAGTGACTGGACATATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTAATATATG : CAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGAAAACGACTAGCAGATGAA : GTCAGGCTGGTTGTAAAGAAGAAAGAAAGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGTGTACTTTATTCATCAGACAACTGTAATGAGCAGTACAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTATGCTCCTCAAATGTAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACGTTGGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAG : CTACCTTTTCTCTTTGGGTTGCCTATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTTGTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACGAAACCACCTCTTTTGCTAAGGATGGCATCAGACTGTGATGATGGAAAATTTAT : ATCAGCGCTTGGTTCTTTCAAATGGCGTGTTCTTTATGCTAATGTCTCTTATGATCGTATCCTGTTGG</gDNA_template>
            <first_frame> F  F  F  V  I  F  T  F  L  L  L  I  F  F  L  F  *  S  T  A  M  L  *  L  E  I  S  L  F  F  W :   D  K  Q  H  L  *  K  S  K  L  *  S  P  C  N  E  Y  N  *  R  R  C  Y  V  S  E  S  L  D  G  Y  W  G  *  T  *  T  S  S  S  P  C  S  W  H  L  S  K  :  P  K  *  L  D  I  C  T  S  R  V  E  K  A  V  G  K  K  L  F  N  I  C :   K  F  M  *  Y  V  H  *  N  L  H  W  D  *  W  S  W  K  T  T  S  R  *   : S  Q  A  G  C  K  E  E  R  K  P  E  E  D  I  L  F  S  S  F  S  W  W  I  D  C  K  I  C  T  W  C  T  L  F  I  R  Q  L  *  *  A  V  Q  *  C  S  H  F  N  *  C  K  P  Q  T  S  M  L  L  K  C  R  I  D  C  W  P  G  A  S  Q  F  Y  H  V  G  N  T  T  S  W  C  E  R  E  K  S   : A  T  F  S  L  W  V  A  Y  L  G  E  T  C  S  T  Y  S  S  Y  I  C  W  S  N  W  *  S  A  L  P  Y  R  W  Q  T  Y  E  T  T  S  F  A  K  D  G  I  R  L  *  *  W  K  I  Y  :  I  S  A  W  F  F  Q  M  A  C  S  L  C  *  C  L  L  *  S  Y  P  V   </first_frame>
            <second_frame>  S  S  S  S  S  S  P  S  S  S  S  S  S  S  S  F  D  Q  R  R  C  F  N  W  K  F  L  C  F  S   : G  I  N  N  I  C  R  S  Q  S  F  R  A  H  A  M  S  T  T  E  G  G  V  M  S  P  K  V  L  M  D  T  G  D  E  P  E  H  L  L  V  L  V  H  G  I  L  A  S :   P  S  D  W  T  Y  V  Q  A  E  L  R  R  R  L  G  R  N  F  L  I  Y   : A  S  S  C  N  T  F  T  K  T  F  T  G  I  D  G  A  G  K  R  L  A  D  E  :  V  R  L  V  V  K  K  K  E  S  L  K  K  I  S  F  L  A  H  S  L  G  G  L  I  A  R  Y  A  L  G  V  L  Y  S  S  D  N  C  N  E  Q  Y  N  D  A  V  T  S  T  S  A  N  L  K  P  V  C  S  S  N  V  G  L  I  A  G  L  E  P  V  N  F  I  T  L  A  T  P  H  L  G  V  R  G  K  N  Q  :  L  P  F  L  F  G  L  P  I  L  E  K  L  A  A  P  I  A  P  I  F  V  G  Q  T  G  S  Q  L  F  L  T  D  G  K  P  T  K  P  P  L  L  L  R  M  A  S  D  C  D  D  G  K  F  I :   S  A  L  G  S  F  K  W  R  V  L  Y  A  N  V  S  Y  D  R  I  L  L  </second_frame>
            <third_frame>   L  L  R  H  L  H  L  P  P  P  H  L  L  P  L  L  I  N  G  D  A  L  I  G  N  F  S  V  F  L  :  G  *  T  T  S  V  E  V  K  A  L  E  P  M  Q  *  V  Q  L  K  E  V  L  C  L  R  K  S  *  W  I  L  G  M  N  L  N  I  F  *  S  L  F  M  A  S  *  Q   : A  Q  V  T  G  H  M  Y  K  Q  S  *  E  G  G  W  E  E  T  F  *  Y  M  :  Q  V  H  V  I  R  S  L  K  P  S  L  G  L  M  E  L  E  N  D  *  Q  M  K :   S  G  W  L  *  R  R  K  K  A  *  R  R  Y  P  F  *  L  I  L  L  V  D  *  L  Q  D  M  H  L  V  Y  F  I  H  Q  T  T  V  M  S  S  T  M  M  Q  S  L  Q  L  V  Q  T  S  N  Q  Y  A  P  Q  M  *  D  *  L  L  A  W  S  Q  S  I  L  S  R  W  Q  H  H  I  L  V  *  E  G  K  I  S :   Y  L  F  S  L  G  C  L  S  W  R  N  L  Q  H  L  *  L  L  Y  L  L  V  K  L  V  V  S  S  S  L  Q  M  A  N  L  R  N  H  L  F  C  *  G  W  H  Q  T  V  M  M  E  N  L   : Y  Q  R  L  V  L  S  N  G  V  F  F  M  L  M  S  L  M  I  V  S  C  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83858" stop="83768"/>
                    <exon start="80240" stop="80096"/>
                    <exon start="79220" stop="79153"/>
                    <exon start="78996" stop="78926"/>
                    <exon start="78191" stop="77928"/>
                    <exon start="76572" stop="76409"/>
                    <exon start="76320" stop="76254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSSSPSSSSSSSSFDQRRCFNWKFLCFSGINNICRSQSFRAHAMSTTEGGVMSPKVLMDTGDEPEHLLVLVHGILASPSDWTYVQAELRRRLGRNFLIYASSCNTFTKTFTGIDGAGKRLADEVRLVVKKKESLKKISFLAHSLGGLIARYALGVLYSSDNCNEQYNDAVTSTSANLKPVCSSNVGLIAGLEPVNFITLATPHLGVRGKNQLPFLFGLPILEKLAAPIAPIFVGQTGSQLFLTDGKPTKPPLLLRMASDCDDGKFISALGSFKWRVLYANVSYDRILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83999" e_stop="83768"/>
            <exon e_start="80240" e_stop="79906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83999" e_stop="83768" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83767" i_stop="80241" i_length="3527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80240" e_stop="79906" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83999" stop="83768"/>
              <exon start="80240" stop="79960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83996" stop="83768"/>
              <exon start="80240" stop="79906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83996" stop="83768"/>
              <exon start="80240" stop="79921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAACAAACAGAATCCCCAAAAGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATATATATGGCGTCATCAGCGACAGTACTTCATCATTATTCTCCTCGCCCTTCTTTCTCTACCAATTCTTCTTCTTCTTCGTCATCTTCACCTTCCTCCTCCTCATCTTCTTCCTCTTTTGATCAACGGCGATGCTTTAATTGGAAATTTCTCTGTTTTTCTG : GGATAAACAACATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGAGTACAACTGAAGGAGGTGTTATGTCTCCGAAAGTCTTGATGGATACTGGGGATGAACCTGAACATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGGTAGGGAGTTTTGTTTGCTCATCCTGGAAGGATGCTTTCACGTGTCTACAAAGTTTATATACATGTGTGTAGATATATGTATGTACATGCAATTGAAAAAAAAATGTAATGGAAAGTGAACATGATATCTCGCGAGATTTAGAAAACTGTAAGGAGTCTGGGTGTTGGGGTCAAAAAAGATAAAAGAAGA</gDNA_template>
            <first_frame> N  N  K  Q  N  P  Q  K  V  L  F  S  F  Y  T  C  W  V  I  P  *  P  Y  I  Y  M  A  S  S  A  T  V  L  H  H  Y  S  P  R  P  S  F  S  T  N  S  S  S  S  S  S  S  S  P  S  S  S  S  S  S  S  S  F  D  Q  R  R  C  F  N  W  K  F  L  C  F  S   : G  I  N  N  I  C  R  S  Q  S  F  R  A  H  A  M  S  T  T  E  G  G  V  M  S  P  K  V  L  M  D  T  G  D  E  P  E  H  L  L  V  L  V  H  G  I  L  A  R  *  G  V  L  F  A  H  P  G  R  M  L  S  R  V  Y  K  V  Y  I  H  V  C  R  Y  M  Y  V  H  A  I  E  K  K  M  *  W  K  V  N  M  I  S  R  E  I  *  K  T  V  R  S  L  G  V  G  V  K  K  D  K  R  R </first_frame>
            <second_frame>  T  T  N  R  I  P  K  R  S  S  S  L  S  T  L  V  G  L  S  H  S  H  I  Y  I  W  R  H  Q  R  Q  Y  F  I  I  I  L  L  A  L  L  S  L  P  I  L  L  L  L  R  H  L  H  L  P  P  P  H  L  L  P  L  L  I  N  G  D  A  L  I  G  N  F  S  V  F  L  :  G  *  T  T  S  V  E  V  K  A  L  E  P  M  Q  *  V  Q  L  K  E  V  L  C  L  R  K  S  *  W  I  L  G  M  N  L  N  I  F  *  S  L  F  M  A  S  *  Q  G  R  E  F  C  L  L  I  L  E  G  C  F  H  V  S  T  K  F  I  Y  M  C  V  D  I  C  M  Y  M  Q  L  K  K  K  C  N  G  K  *  T  *  Y  L  A  R  F  R  K  L  *  G  V  W  V  L  G  S  K  K  I  K  E   </second_frame>
            <third_frame>   Q  Q  T  E  S  P  K  G  P  L  L  F  L  H  L  L  G  Y  P  I  A  I  Y  I  Y  G  V  I  S  D  S  T  S  S  L  F  S  S  P  F  F  L  Y  Q  F  F  F  F  F  V  I  F  T  F  L  L  L  I  F  F  L  F  *  S  T  A  M  L  *  L  E  I  S  L  F  F  W :   D  K  Q  H  L  *  K  S  K  L  *  S  P  C  N  E  Y  N  *  R  R  C  Y  V  S  E  S  L  D  G  Y  W  G  *  T  *  T  S  S  S  P  C  S  W  H  L  S  K  V  G  S  F  V  C  S  S  W  K  D  A  F  T  C  L  Q  S  L  Y  T  C  V  *  I  Y  V  C  T  C  N  *  K  K  N  V  M  E  S  E  H  D  I  S  R  D  L  E  N  C  K  E  S  G  C  W  G  Q  K  R  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83936" stop="83768"/>
                    <exon start="80240" stop="80092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYIYMASSATVLHHYSPRPSFSTNSSSSSSSSPSSSSSSSSFDQRRCFNWKFLCFSGINNICRSQSFRAHAMSTTEGGVMSPKVLMDTGDEPEHLLVLVHGILAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83998" stop="83768"/>
                    <exon start="80240" stop="80235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTNRIPKRSSSLSTLVGLSHSHIYIWRHQRQYFIIILLALLSLPILLLLRHLHLPPPHLLPLLINGDALIGNFSVFLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="84758" PGL_stop="86570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84758" e_stop="85035"/>
            <exon e_start="85885" e_stop="86570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.952"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="84758" e_stop="85035" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85036" i_stop="85884" i_length="849"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="85885" e_stop="86570" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84758" stop="85035"/>
              <exon start="85885" stop="86032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84767" stop="85035"/>
              <exon start="85885" stop="86287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84773" stop="85035"/>
              <exon start="85885" stop="86260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84774" stop="85035"/>
              <exon start="85885" stop="86295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84774" stop="85035"/>
              <exon start="85885" stop="86221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84774" stop="85035"/>
              <exon start="85885" stop="86133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84774" stop="85035"/>
              <exon start="85885" stop="86025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84775" stop="85035"/>
              <exon start="85885" stop="86206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84777" stop="85035"/>
              <exon start="85885" stop="86269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84777" stop="85035"/>
              <exon start="85885" stop="86102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84785" stop="85035"/>
              <exon start="85885" stop="86223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84786" stop="85035"/>
              <exon start="85885" stop="86111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84788" stop="85035"/>
              <exon start="85885" stop="86151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84788" stop="85017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85885" stop="86570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAACAAAGAAAGGTGCTTTCTAACTTCGATTTTGCAACCTGCAGAAAGAAACAAGGAAAGGCCAAAAATATATATATTTTGAGAGAAAAAAGGAGGAAGAGAAATGGGAAAATCAACCATAATCTTTATTGCTAGTGCTATTTGCTTGTTCTCCCTATTAGGGATTACTCAAGCCAATGAAGAATCTGATAAGTATCAATTTATTCTCGAAGGAATGGTGTATTGTGATCCTTGTCGCTCCATATTCAAAACCAATCTTAGTGAGCCAGTTGTAG : ATGCGAGGGTGGGGATGCAATGCCGACACCCCGAAACTGAACGAGTCACAATAACTGTGACAGCCTCGACTAACTCCACTGGATATTACCACATGTTGATTGAAGGTGATCATGAGAACGAAATCTGCGAGACATATTTGATAAAAAGTCCAAAAGAAGATTGCAGTGAGATCCCAACTGAAGGACATACCAGGGAATTATCAAGAGTTACACTGACTAGCAAAAATGGCATTGCTGGAAAGAATCGTGAATCCAATCCACTCTTTTTCTTGACCAAAAAAGTAGCACCAGAATGTCAACAGGAATTCAAGGAAATGGAATATCTCCCTGAACTTAAAGATATTAACCAGGCCTAAACGATTTTAAATTAAATTACAATAACACTGAGAGTCTATTTGGATCGACTTTTGACTTCATCGCTAAAATCTCTAACTTATGATTTTTAGTTTATTTTTATCATATAGTTTTAAAGTCAAATTTTAATAAGCTCTAAAAAAGTAATTAAAATAAGTCAATTCAAACAGATTCTAAATATTATCTTACATTTATTTTATTTGTTCTGTCATTAATTTTGCATCTATATATATACAAACTTTAATCAAGGACGATATGGTCATTTAATCATTTTTATGTAATTTTGTGTTAGTTTGTATTTTGATTTTGAGGCTTGAGAGGTTCCTAAACTT</gDNA_template>
            <first_frame> D  K  Q  R  K  V  L  S  N  F  D  F  A  T  C  R  K  K  Q  G  K  A  K  N  I  Y  I  L  R  E  K  R  R  K  R  N  G  K  I  N  H  N  L  Y  C  *  C  Y  L  L  V  L  P  I  R  D  Y  S  S  Q  *  R  I  *  *  V  S  I  Y  S  R  R  N  G  V  L  *  S  L  S  L  H  I  Q  N  Q  S  *  *  A  S  C  R :   C  E  G  G  D  A  M  P  T  P  R  N  *  T  S  H  N  N  C  D  S  L  D  *  L  H  W  I  L  P  H  V  D  *  R  *  S  *  E  R  N  L  R  D  I  F  D  K  K  S  K  R  R  L  Q  *  D  P  N  *  R  T  Y  Q  G  I  I  K  S  Y  T  D  *  Q  K  W  H  C  W  K  E  S  *  I  Q  S  T  L  F  L  D  Q  K  S  S  T  R  M  S  T  G  I  Q  G  N  G  I  S  P  *  T  *  R  Y  *  P  G  L  N  D  F  K  L  N  Y  N  N  T  E  S  L  F  G  S  T  F  D  F  I  A  K  I  S  N  L  *  F  L  V  Y  F  Y  H  I  V  L  K  S  N  F  N  K  L  *  K  S  N  *  N  K  S  I  Q  T  D  S  K  Y  Y  L  T  F  I  L  F  V  L  S  L  I  L  H  L  Y  I  Y  K  L  *  S  R  T  I  W  S  F  N  H  F  Y  V  I  L  C  *  F  V  F  *  F  *  G  L  R  G  S  *  T  </first_frame>
            <second_frame>  T  N  K  E  R  C  F  L  T  S  I  L  Q  P  A  E  R  N  K  E  R  P  K  I  Y  I  F  *  E  K  K  G  G  R  E  M  G  K  S  T  I  I  F  I  A  S  A  I  C  L  F  S  L  L  G  I  T  Q  A  N  E  E  S  D  K  Y  Q  F  I  L  E  G  M  V  Y  C  D  P  C  R  S  I  F  K  T  N  L  S  E  P  V  V   : D  A  R  V  G  M  Q  C  R  H  P  E  T  E  R  V  T  I  T  V  T  A  S  T  N  S  T  G  Y  Y  H  M  L  I  E  G  D  H  E  N  E  I  C  E  T  Y  L  I  K  S  P  K  E  D  C  S  E  I  P  T  E  G  H  T  R  E  L  S  R  V  T  L  T  S  K  N  G  I  A  G  K  N  R  E  S  N  P  L  F  F  L  T  K  K  V  A  P  E  C  Q  Q  E  F  K  E  M  E  Y  L  P  E  L  K  D  I  N  Q  A  *  T  I  L  N  *  I  T  I  T  L  R  V  Y  L  D  R  L  L  T  S  S  L  K  S  L  T  Y  D  F  *  F  I  F  I  I  *  F  *  S  Q  I  L  I  S  S  K  K  V  I  K  I  S  Q  F  K  Q  I  L  N  I  I  L  H  L  F  Y  L  F  C  H  *  F  C  I  Y  I  Y  T  N  F  N  Q  G  R  Y  G  H  L  I  I  F  M  *  F  C  V  S  L  Y  F  D  F  E  A  *  E  V  P  K  L </second_frame>
            <third_frame>   Q  T  K  K  G  A  F  *  L  R  F  C  N  L  Q  K  E  T  R  K  G  Q  K  Y  I  Y  F  E  R  K  K  E  E  E  K  W  E  N  Q  P  *  S  L  L  L  V  L  F  A  C  S  P  Y  *  G  L  L  K  P  M  K  N  L  I  S  I  N  L  F  S  K  E  W  C  I  V  I  L  V  A  P  Y  S  K  P  I  L  V  S  Q  L  *  :  M  R  G  W  G  C  N  A  D  T  P  K  L  N  E  S  Q  *  L  *  Q  P  R  L  T  P  L  D  I  T  T  C  *  L  K  V  I  M  R  T  K  S  A  R  H  I  *  *  K  V  Q  K  K  I  A  V  R  S  Q  L  K  D  I  P  G  N  Y  Q  E  L  H  *  L  A  K  M  A  L  L  E  R  I  V  N  P  I  H  S  F  S  *  P  K  K  *  H  Q  N  V  N  R  N  S  R  K  W  N  I  S  L  N  L  K  I  L  T  R  P  K  R  F  *  I  K  L  Q  *  H  *  E  S  I  W  I  D  F  *  L  H  R  *  N  L  *  L  M  I  F  S  L  F  L  S  Y  S  F  K  V  K  F  *  *  A  L  K  K  *  L  K  *  V  N  S  N  R  F  *  I  L  S  Y  I  Y  F  I  C  S  V  I  N  F  A  S  I  Y  I  Q  T  L  I  K  D  D  M  V  I  *  S  F  L  C  N  F  V  L  V  C  I  L  I  L  R  L  E  R  F  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84843" stop="85035"/>
                    <exon start="85885" stop="86240"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKGGREMGKSTIIFIASAICLFSLLGITQANEESDKYQFILEGMVYCDPCRSIFKTNLSEPVVDARVGMQCRHPETERVTITVTASTNSTGYYHMLIEGDHENEICETYLIKSPKEDCSEIPTEGHTRELSRVTLTSKNGIAGKNRESNPLFFLTKKVAPECQQEFKEMEYLPELKDINQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="91138" PGL_stop="90590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91138" e_stop="90590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91138" e_stop="90590" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91138" stop="90590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCCATCTCTCAAGGCATCAAATTGTTTGGTGCAACAATAGAAATTCAAGAAAAACAAGCCAAAGCTACTCATCAACCAACAAACAAAGTTGTTGTTGATGATGATGATGATAATGATCAAGAAAAAAGGCCAGACAAGATCATCCCTTGCCCTAGATGTAAAAGCATGGAAACAAAATTTTGTTACTTCAACAACTACAATGTTAACCAACCTAGACACTTCTGCAAAGGTTGTCAGAGATATTGGACGGCCGGTGGAGCCCTACGGAACGTGCCCGTAGGAGCCGGCCGTCGCAAAGCCAAGCCACCATGCGGGCCCGGCCCGCATGGCGACTTGGCTGACGGTTGTAATCTATTTGATGTGGCTAATCAGCTTGACTTTGATGGATCAGTGGTGGCTCATGAAGATCAATGGCATCTTTTTCCGGCAGCTAAGAGGAGGAGAAGCACCTCCGATAGCCAATCTTATTGATTCCCTCTTTGTCGTTTAGTAATTATATATTTTATGTACGTGGAATTAGTAAATGGTTAATTAATTAAAAAAAAAG</gDNA_template>
            <first_frame> V  P  S  L  K  A  S  N  C  L  V  Q  Q  *  K  F  K  K  N  K  P  K  L  L  I  N  Q  Q  T  K  L  L  L  M  M  M  M  I  M  I  K  K  K  G  Q  T  R  S  S  L  A  L  D  V  K  A  W  K  Q  N  F  V  T  S  T  T  T  M  L  T  N  L  D  T  S  A  K  V  V  R  D  I  G  R  P  V  E  P  Y  G  T  C  P  *  E  P  A  V  A  K  P  S  H  H  A  G  P  A  R  M  A  T  W  L  T  V  V  I  Y  L  M  W  L  I  S  L  T  L  M  D  Q  W  W  L  M  K  I  N  G  I  F  F  R  Q  L  R  G  G  E  A  P  P  I  A  N  L  I  D  S  L  F  V  V  *  *  L  Y  I  L  C  T  W  N  *  *  M  V  N  *  L  K  K  K </first_frame>
            <second_frame>  S  H  L  S  R  H  Q  I  V  W  C  N  N  R  N  S  R  K  T  S  Q  S  Y  S  S  T  N  K  Q  S  C  C  *  *  *  *  *  *  *  S  R  K  K  A  R  Q  D  H  P  L  P  *  M  *  K  H  G  N  K  I  L  L  L  Q  Q  L  Q  C  *  P  T  *  T  L  L  Q  R  L  S  E  I  L  D  G  R  W  S  P  T  E  R  A  R  R  S  R  P  S  Q  S  Q  A  T  M  R  A  R  P  A  W  R  L  G  *  R  L  *  S  I  *  C  G  *  S  A  *  L  *  W  I  S  G  G  S  *  R  S  M  A  S  F  S  G  S  *  E  E  E  K  H  L  R  *  P  I  L  L  I  P  S  L  S  F  S  N  Y  I  F  Y  V  R  G  I  S  K  W  L  I  N  *  K  K   </second_frame>
            <third_frame>   P  I  S  Q  G  I  K  L  F  G  A  T  I  E  I  Q  E  K  Q  A  K  A  T  H  Q  P  T  N  K  V  V  V  D  D  D  D  D  N  D  Q  E  K  R  P  D  K  I  I  P  C  P  R  C  K  S  M  E  T  K  F  C  Y  F  N  N  Y  N  V  N  Q  P  R  H  F  C  K  G  C  Q  R  Y  W  T  A  G  G  A  L  R  N  V  P  V  G  A  G  R  R  K  A  K  P  P  C  G  P  G  P  H  G  D  L  A  D  G  C  N  L  F  D  V  A  N  Q  L  D  F  D  G  S  V  V  A  H  E  D  Q  W  H  L  F  P  A  A  K  R  R  R  S  T  S  D  S  Q  S  Y  *  F  P  L  C  R  L  V  I  I  Y  F  M  Y  V  E  L  V  N  G  *  L  I  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122E16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91136" stop="90666"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISQGIKLFGATIEIQEKQAKATHQPTNKVVVDDDDDNDQEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCGPGPHGDLADGCNLFDVANQLDFDGSVVAHEDQWHLFPAAKRRRSTSDSQSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 84 chains have been computed
$ 
$ memory statistics:
$ 73040 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2148 bytes was the average size of a spliced alignment
$ 14520 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1815 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 91 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:06:18
-->
