<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:16:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1818" ref_strand="+" ref_description="T1818">
      <seq>gccaccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6451" stop="8543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6750" g_stop="6807" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="247" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="308" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8243" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="364" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="T1818" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="T1818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6750" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGC</genome_strand>
        <mrna_strand>GCCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g34470" ref_strand="+" ref_description="C2_At2g34470">
      <seq>caacacctcaaatggcttcttcaggtcaccatatgcatgaccatgaccaccatgaccatgataaccaccatcatcatcaccatacccatgaggacacgaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcaatgagagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaagctcttaagggaaaaatacagtcttgcagcagtaacaaacgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatcagcgggtgacaaaattcctcgaaaaggaggccccggaattacgcaagcagatctccttgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatctgaacattcaatttccctgtttctggagtaatataatctatctactgaataatgcttgttatgtacaagcactaagtatttgtaagtttctatatttaatttggtttgtttgatcatcattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6430" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6791" g_stop="6807" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="91" r_length="17" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="280" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="341" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="543" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="665" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="770" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10351" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="1039" r_length="269" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="C2_At2g34470" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At2g34470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6791" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</genome_strand>
        <mrna_strand>CATCACCATACCCATGA....................................................................................GGACACGAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAATGAGAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAGCTCTTAAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAACGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCAGCGGGTGACAAAATTCCTCGAAAAGGAGGCCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGCTA-TCT-GAACATTCAATTTCCCTGTTTCTGGAGTAATATAATCTATCTACTGAATAATGCTTGTTATGTACAAGCACTAAGTATTTGTAAGTTTCTATATTTAATTTGGTTTGTTTGATC-ATCATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1516" ref_strand="+" ref_description="T1516">
      <seq>aaacctccatacattctctgtccacactaaaaatcacattttttcatcttaaaccaacaacatggaaggaagtgaaatcaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaacacagggaagaggattgttgagcagcttttggctaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctgttttacccgaagcaaacccttttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttagtcaacttcaatccacaaaatagtagtatttaccagatccttcacgcctgatcttgatgatcagcaaagtgagatattttgtgataggcttgatgggagtttccgtctcattttatgcaatgcaacgtcttttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44304" stop="41912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44004" g_stop="43944" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="262" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42212" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="524" r_length="262" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="T1516" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="T1516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44004" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGC-ACGTCTTTTCAGTA</genome_strand>
        <mrna_strand>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTTCATCTTAAACCAACAAC................................................................................................ATGGAAGGAAGTGAAATCAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCAACGTCTTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0187" ref_strand="+" ref_description="T0187">
      <seq>aaaacatcccccagttcaccaatgtgaggtcattgggtgctagaagagtgcctttaacagtaacagcttctgcatctactgtttctgctccaaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgtttgggaatgatgccgatacttactatgacagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaaatttcctacgagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgatagattagaaaagattgataaagagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62531" stop="60952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62231" g_stop="61834" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61252" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="456" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="T0187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="T0187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62231" e_stop="61834"/>
          <exon e_start="61309" e_stop="61252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTT</genome_strand>
        <mrna_strand>AAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAGAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cTOB-9-H18" ref_strand="+" ref_description="cTOB-9-H18">
      <seq>ctttctctctctaaaaatagtacgaatacactcgcatcgttaacatcgaaaagctttttgctgctgcttcttcttcttcttcttgctccgccacctcaaatctgaaaacccatttcagttaacaatggaagcaatccaatctgtatcatttcgtccgtctccactcgaacctctacgaaaaaacatcccccagctcaccaatgtgaggtcattgggtgctagaagagcgcctttaacagtaacagcttctgcatctactggttctgctccaaaaagagagaaagacccaaagaaaagggtcggtataactgggacgggtcttggttctgagtttgggaatgatgccgatacttactatgacagactctgggctggtgaaagtgggattgcgcttattgatcgccgtgatgctcttaaactgactacgagatgtgggggacaaattcgcgggtatacatctgaagggtgtattgatgggaagaatgataggaggctggatgattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62710" stop="61605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62410" g_stop="61905" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="cTOB-9-H18" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="cTOB-9-H18" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62410" e_stop="61905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTT</genome_strand>
        <mrna_strand>CTTTCTCTCTCTAAAAATAGTACGAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTGTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGCTCACCAATGTGAGGTCATTGGGTGCTAGAAGAGCGCCTTTAACAGTAACAGCTTCTGCATCTACTGGTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTCGGTATAACTGGGACGGGTCTTGGTTCTGAGTTTGGGAATGATGCCGATACTTACTATGACAGACTCTGGGCTGGTGAAAGTGGGATTGCGCTTATTGATCGCCGTGATGCTCTTAAACTGACTACGAGATGTGGGGGACAAATTCGCGGGTATACATCTGAAGGGTGTATTGATGGGAAGAATGATAGGAGGCTGGATGATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g40480" ref_strand="+" ref_description="C2_At5g40480">
      <seq>tttgagtgttcgaatatgaaactgcaaactacagttacggtgtcacagccagagatgatgtctgttgatgctccaagggaaatcctgacaaatgtgccgcttcctgcaaatggatatagctttcttgtaaaactcaatgatgcttatcgccacaagtataaatctgctaaaaacagtgcaattttcttgtttgattgcctggttgatccaccttatgttggttatgtgaagccgtgggttgatcttgatactggtaattcatattgccttttctttccttactctccagaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttatctgttactattaaggcatcactcatcggagagcagaatatctcaggatctgcatcagcactttttgttggaggtttcatcattccgggaacagaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaacacagatgtgagtatctactggcatgatcgggaacggctagctgtcagacccatacatggagaagattctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagaaaagtttaaagacaaactgatttttacactcccagcaactggtcagatcatggaagttaatgttaactatgaacctgaagagagaagagcaacaactgctaaccttaatctatgggttactgcagctgcttgtttcatcttgcttattgtcacagccactgtattcatttcttacttggatcaacctgtgagatcccgaccatctgctcctcctggcacgccgagtgtagctgcacctgtaactcctgagcgaagcagtcctgctggagtaagcgaacattcccctcggacacctcaacctttcttggattatgttaggaggacaattgatgaaactccatactacagacaagactttaggaggagggctaaccctcagaacacttactagcatattggggggccaattctccccttccctcctcccccttttgcctttgcctttgccagatatgccaaatggtttctcaggtaattgccaaaggtcttgaatctggctgcaaactttacaatgatagtggtgtagttttgtaggtgtaattttgtgtagagtattgcaagctgtgtcattggatactttcttgagaagcaggctcatctgccaaaaaattgtgtcctgctttctgctggaaaaggcaatataatagcactttctacagtataacttgcctatgcacaactcctgatgaagcagttgtgattttgtgctcatcatatttggtaaaatcaggtctgaatgtgaaaacgatttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71673" stop="69689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71373" g_stop="69985" g_length="1389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1379" r_length="1379" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="C2_At5g40480" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1389</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g40480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71373" e_stop="69985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGAGAAATCCTGACAAATGTGCCACTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTG-C--T---AGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTACAGTACAACTTGCCTATGCACAAACTAGAAAACATCTCTCTGATGAAGCAGTTGAGATTGTGCTCATCATATTTGGTAAAATCAGGTTTGAATGTGAAGAGAATTTTTAAATAGCTG</genome_strand>
        <mrna_strand>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGGGAAATCCTGACAAATGTGCCGCTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGTGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACTGGTAATTCATATTGCCTTTTCTTTCCTTACTCTCCAGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTATCTGTTACTATTAAGGCATCACTCATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACAGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGGCTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAAAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCATGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAACTGCTAACCTTAATCTATGGGTTACTGCAGCTGCTTGTTTCATCTTGCTTATTGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACGCCGAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCCCCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGGGGGGCCAATTCTCCCCTTCCCTCCTCCCCCTTTTGCCTTTGCCTTTGCCAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGGTGTAGTTTTGTAGGTGTAATTTTGTGTAGAGTATTGCAAGC--TGTGTCATTGGATACTTTCTTGAGAAGCAGGCTCATCTGCCAAAAAA---TTGTGTCCTGCTTTCTGCTGGAAAAGGCAATATAATAGCACTTTCTACAGTATAACTTGCCTATGCAC-AACT------C--CT-GATGAAGCAGTTG-TGATTTTGTGCTCATCATATTTGGTAAAATCAGGTCTGAATGTGAAAACGATTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR82" ref_strand="+" ref_description="SSR82">
      <seq>gcaaattcaaagaaaaagataccatcgaggctgcataaagagaaaaaaaagtaaggggaattaggagaatatcgttttggataccatttcattttcttttttacttcttcaagacttgtttgttgtaagtgttttgggtacatatatatgcatatatatatatatatatatatatatatatatatatatatacaagcttatcatcatattgtgtgtccacgtttttttctctgtattagaggggaaagggggtaagaaggattgaggcagtggatggttttttaaaaggtaaagaaaaagagtgagaagaacatgattgagtggagagaagggacttgttatcctaaggctttaatgggagtgaatgtgggtcttgcttctgtcgatgccgttattgcagttcttgcttttgctcagttaatgagaattcactctcggaatacacacaatggctggactcgtcagaaagtatttcacttgatgattggatcttcaaatttgggttatttcctttattttattttgacaattgttgccgcatgtaagggttggattttctggtcgcactcctgtggctttgtggttatggctttccccaaaattcttttccttgcggcatttcttcttctcctttctttctgggttgatctttgtcatcagtcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="116377" stop="126597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116677" g_stop="117097" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117098" i_stop="121151" i_length="4054">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121152" g_stop="121202" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="468" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121203" i_stop="123275" i_length="2073">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123276" g_stop="123309" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="502" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123310" i_stop="124865" i_length="1556">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124866" g_stop="124952" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="589" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124953" i_stop="125023" i_length="71">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125024" g_stop="125075" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="641" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125076" i_stop="126272" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="126273" g_stop="126297" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="666" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SSR82" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SSR82" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116677" e_stop="117097"/>
          <exon e_start="121152" e_stop="121202"/>
          <exon e_start="123276" e_stop="123309"/>
          <exon e_start="124866" e_stop="124952"/>
          <exon e_start="125024" e_stop="125075"/>
          <exon e_start="126273" e_stop="126297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAA-GGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAGGTACTCTTCTCTCCCCCCTGTTCTTCATTGTTTCAGAGGGTGTTGTTATATATGTGGAGTTTCTGCTAAAAATTCTGTATTGATTATTGGAATTTTTTGTGTTGGGTGTTCGTTTCTTGTTCCCAATTTGGGATTTTGGGAATGCATTCCAATTGGGATTTTTGAAGGGTTTTAATGGATTCTGAATGATAATCTTGTTTGTGATGGGCAATGGAAAGGTGCTGTTTCGGCTAGGTTTGTGATATTGATTGAAAAATTGAGTCCTTTTGCTAAATTTTCTTCCTGTGGCTTATTAGTTTCTGGTTTCTGTGTTGTCAATTCCGTTAATATGCTTGAATTCGAAGGAATGTAAGTTCATTTGTCACAATGGGGTTAAGTTTTTTGCTTTCTAATTTATCATGGGTTTATACAGACGCATTTTCTTGAGACAGTTTTCTGCCATTGTCATGCATAGTTTAATATAATAAGTAGTGTATCTCTTTGACAAGTTCTGCTGAATTTAGTAATTTAAAGTTGCAAAGATTCGATTCGAAGAGACCAAATGTAATCTTGTTCTGAATATGGATTTTCTGAAGCAGAAAGCTTATTTTTCACGGGGACTTTGCCATAGATCACTTGCATAGCGATTTTTACTATGATTTCTCTTCCTCTTCTCTGGGAGGAGTAGGATGCAGTTTTTCTGGGCCAAATTGTGATATGTTTTGTCATATAGGGCTTGCAGCAACATTTAGGGAGTTATCGAGAAGTGATTTTCACTGTTTTGAGGGACTTTACCAGTATTATGGCATTTATGGCCAATATGATTACCCATGGAGATTGCATTAAGTATATGATTATTATCTCCACATTCAATAGATTTTGCTGCATTTGGTGAAAATGGTTAGTTTCATTGTTACAATACCATCTAAGATACTAGCTAAATGTGGAACTTTTGAATCATTGGTATTCGTATACCCGCTCTGCATTTGTGTAGGTGAACATGATTTTTGATGTCCTTGAGAATGGGCTAAAATTGGGATTGTTCTTGAAGCAGACTACTGGGATTCAACCATGTGTTGTTTTTCTGTTAATGCTTATCAAATACCATATTAGTCCTACGCTTGCATATTATTTGATTAAAAATGGAATAAAAAACAATTTTATCTGAAATTATATTGTTAAATGATTCTCGGAGAATCAAGAAGATTGTGGGTACTAATTTTATTCATGACAAAGAGATCTTATATGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGGGTATGCCTTCTGGGTCGAGATCGCCTGGTGCGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTGTGCGCACCCAAAAGGGTAGTAGCTGCGGGTTTCCCTTGTAGTAAAAAAAAAAAAAGAAGAGAGATCTTATATTTCAATTTTGGACCAGAGATGATACGTGTAAAACTCTTCTTTCTCATTGAGAGTGCAAGATATCATTCCAAAGAATAGTTTGAAAGCTATTCAGAAAGTAGCCAATTTTTTAGAGCTAATGGCTCTTGTTTAAGGCAGGAGAGTACCTTGCTTTTCCTTTTGAGATATCCGGTACTCTAACAGAATTTTGTGATCCTTTTGTTCACTATCCAAATGCAGTTAAAGCAAAAACTTGGTACGTTGGGATAACCTTTAATTGAAAGCTAATATGGTGTAAGCATAACTCAGGGTATGGATCTTTTTTTCCCATCCATGTTGTTGTCAATGCTTCCTGAACTGCAAACCGAATCTCCAAATATCTTCCTTACTCCTCCTCCTTTAGGCATGACCTCTTTGAAGGTTTTTTTTTTCTTTTGATGAAGTAATTAGTTCTATTGCAGGCATCAAGTAGATGCATAATAGTTAGAAAAGCTTAGTAGCAAAAGGTCAGCTCTCCTTTACATTGTTAATTGAGAATCAGGGAGCGGACATGGTTCAGAAATCAGGGCAATCTAGAGGGGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTAGGTAGTTGATTCCATCAAAGCATCTTCTATTCCTTTCGTTCCAGATACTCCAAAAAATGGCTGCAGGTATCTTTGAAGGTTAACTGACGTACCCCACTTCATATCCCAAGATCATGGTGGATGATGGTTAACTGCAGTGAGGAAGCATTCCCTTTTTCTAATTATTTTTTAAAAAGTCTACTTCTTAAGAAGAAAAAGACATTGCAGACCTGTATCAAAATATTTCATCACTGCTTGGTGCAGCTTTCTGCGACTTAGGTTGCAACTTTCTCCAGTTCTTCTTCTTCAAGCTCCAGCTATGCTGTGTTGCTGCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTACCATGCTGCTATGTTTTTTTTGCTGCTGCTTTCTTTTTTTCTCTTCTCTTGTTTCGGTCTTCTTCAGCTTTTATATTCTTTATTTGTTTCTCTTTTTTTTCTTCTTCAGTATGTTAATTTATTTGGATTTTGTTTATTTGTTGTCTTCTTCTTTTTTTTTCTTTCATGTGTTGCGTGTACTTCTTGTGTCTAATTTTAATTATTTTATTTCCATTTTCTTCTCATATTCATTTTATTCTCTTCTTTTTCAGTAGCTTTTTTTGAATTACAGTTGTTTTTTAATTTTTTGTTCTCTTAACAGCAATTTCAAATGGTATCATCTGAGCAAAATAGAGCCATCAATTTTTTCAATGGCATCATCCATTTATGTTTTGTTTTTTATTTTGCTTGTTCTATCAAGCATTTCTGGCTATCAACTTTCTAGTTTTAAAATTGAAAGATTTGCTTCTATATATTATTTCTGTTGATGTCTTTTTTGATTTAGTTATTTTACTCATATGTGCGAGGTTTATTTTATTTTTGAAATGGTGCTTCACTTCAATGAAGAGAGTGAAGGGAGCTTTTGTTGCTTTTTTGCGCTTCATGCTCTCAAAAACACTGCCTCCCAGCAAACTACTCTATAATTAGTCCAAGGGGAGGGCTAGATTGGTTTTCTTCTACAAGTATAAGTGTCTTCTCCTCATGTATCTTGATTGGTTCAAGATGGAAATCGTTAAGAGTCCCTTGATTATTTGTCCCACTTGAATAAAGAAATTGTTTCTTCGGCTTGGTAACTCTTAAAGGAGGTGTTTGACACATCCCTCGGCAGAAGATGTTACATATGCCTTGTTTTTGCATTGCTCAGTTGCAGCCGATATATGGAAGTATATTCCTGTCCTTTTGTCATTCAATGAGTTATGCCTCATGGTCATAGCATAAAAGCACATACATAAGTGGGGACAATAGAATGTAAGGGAACAATTAAAAAGTTTTGACAGACTGTTCCAGCTTTTATTTTATTTTTTGGTGCCTATGGCTGGAAAGAAATAGCAGAATATGCTTCTCAAGGAGCCTCTTCTCCTATTCATGCTTTGAAGTATGGATGTCTTGGGAACATTTTTTTCTGGAGTAACCATTATATTCTGAATAATTTTGACCAGCTTTTACACTTTGTTAGCTCCTTAGGCGGCATAAAGGAGGATCACTGTTTAATTTAGGTGCTTGCTTAATATGACTAGTTGCTAAGATTGAAAACCAGAGAGGCAGGGGGTGGGGGTTGTGGGAGAGTTTGATGTTGTCAATGAGTTATCAGCATTCAACTACAATCTAGGACCATTGTGAAGATGAGGAATGAATCGAGCAGAGTACTTTTTGACACCAACTGGGTGACTAACTGAAAAAGAGGAAACCTTAATCTAGCTCAATTCTAACCTTGGGATACTGAAGCAATCGAATGGCTGCAAACCAGTTTGGTGCTTCTGTTTAGGTTGCTGCTCGTGCCTTCCGTGGTTGCATAATATTGGTGCAACTCTATTAGAGTATATTCTTGTGCTGTTAATGACACTCACATTTCCAGTGTGGTAGTGATAATTTCTGGTTAAATAGATTGTGCCATCATATTTTTGTGCAACTAAACTTGCTTATCTATTTTTCCAGTTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAAGTAAGTATTTCATCCTCGATTCTCTTGCTGATTTTATTGGTATCTGAGCTGGATGAAAACATTCTGTCCCTCCTACTTTAAATTAAAGTACTTTCCCAAGGTTTAAGTAATTATTGAACAATGTGAAAGCAGGCCAATTTGCTGCCGACACTTTTTGCCTAGTTCCAATTATGAATAGCAAATATACTAATGAAGCATGTTGCTAGATGCTTATATGCGACCGACTTTCCCTTTGATACCGAAAGTTACTGTGATTTGGGTGTTGTTAATTCTCTTTGGGAATTGCACCGAGGGTGTGGCCTAACTGTCAATGAAGATGAAAACCATGGAACATAGAAGAGACAAAGACTCCTAAGTGAGTTCTTCCCATTTGCCTAAGCCTCAGAGGGTAAAGTTACCCTGTATTTGTGTTGGTGTGCGGTAGTCGAAGTGCTCGCAAACTGGTCTAAACACCACAATTACAATAATAGTAGTTTTCTTCGGCAACTAAGACTTAGGTATGCATGTTCATGTGTGTAATCATTTGTATCTTTACATTAACCATAAGTGACAAGGATAAAATCGTGGAGGAGGTGTGCGTATAGGGAGTATAGTTTGAGTAAATGACTGGTTATGTGAGCTCTATTACTGTTGGTACTTGGTATTATTTTATTTTATTTTTGCATACTTATTAGGAACACTTCCCTCATCTGTTTTCCTTCCAGCCAAGCTCCTCACTTATGTTGCCGGTTTACCTATTAAGAGTGTAGAAGAGAGGAGAATGTGAAAAGTCCCAGAACCCATGTTGATGATATTCAACTAAATACTCTTGTCTAAACCATTAGTATTATAATGTTCAAAACGCGTGCCTAGCATTTACGGTTCAGGTGACTTATCATCTCTTTTTAATAATATTAGATAATTCAGGTGACATAACAGTGGTCTTCAGAAGCGAAAATATACTTCAGATTCCTTTACAGTTGTGGTATTAAGTTGCTTCTTTCTCACTATTGCCATAGTAATGAGTAACGATCCTTATCCTCCGTTTCTACAACTTGATAACTATTACCTAAAATTTTCTTTTTTGATAACCATTGCCTAAATTACTGTTCATCATGTAGGTTTTCAAAATTTTAGTATTCATACCAGGTTAGTCTCCAATTTTTTCCATGTGATCTAGTTGTACTCTCTTAATGTATCTCTCTTCCCCTCTCAGTCCTCTGATGAGTACAAATCCAAACTTCAGGATATTAAACCCAGCCTAATTACTTGGCCATTATGGTATTAGTGGTTCATTTATGCTCACATCTAAATTCTTTGGTGTTAGAGATGAGGGGTGTCTATGCTCAGTTCTTGGTGCAAGATCAGTCTATTGATGATTGACCATGGAGGTTTTACGAGTGTGATAATGGTGATATTGAGCTCTGTAACAGTCAGGGTCATAGTAGTGATCGTCTTGTGGAGTTAACCGGTAAATGCTGGCCACTGCTACGTTCTACCATGTTAACTTCCAGCCAAGTGGTACAATGTGTAGTGCAGATTGGGTTGAATATTCTGGTGATGTTACTTCTTCAAAAGAACACAAATGCATCTTTGAATAGCTGAAATTAGTGAATATCGAGGAGTCTTGTTCTGCATGAAATGATCCAAGTATGGTGCAACAAGACGCTTCTTCCACTCATTTGAAGGCACTACCAAAAAACGAGAGTCAGTTTACCTCCTTGTTCTTCTAATACCTGACTGTGAAGTGGCGCATGCTTGATATACCAATTGGAAACGAAACTGGGCTAAACTTGATAATATCTACATAGACTAGCTCCGTGTAATAACAAATAAAAGACTTCATCAACTCTGAGGTAGCACTACATCTCTTGGAGGATATACACATATATTAGAATTTGGAAATATATTGCCTTAATTAGTTTAGTTTACTGCTATGAAGCGACAGTCATCAAGATTTTTCAATGATTCTTCTTCCTTTTGTCCTGGTTAGCCTTAAAAAAAATTCTTTAGTAGATTCAATGAGGCTTCCTTCTTGTTCACTTATGTGCTAATTACAAATCATGCTTACTGGACTTCGCTATGAAATTGCAGGTATTTCACTTGATGATTGGATCTTCAAATTTGGGTAAGCATCTTATTTTCTCTGTTGTATCATCATTCTATCTATGGATTATTTTTCCCTGAGATCTCCCCGGGAGCTCTTATCAAAAGAAAATATTTGCACTCTTACTCATAATATTGAGTTTCTTAAGCCAATTGTTGATGCATATTTTGTTTTGAATGCACATGGGAGAGATTAAATAATGTGAAGCACAAAATGATAAGCAATTTTAAGAGTTAATGCAATGATATGACTTAGATTAATTTGGAAAATATGAAGTTGGGCAAGATTAAGTAATATGTCGCTTTTCTTTATCATTTATGGGAATACAAGCTTCCTGCAAACCTTTCATCCATATGGGGTAACTGAGTTTTTTTTGAGAAAGGTAAAGTTAATTCTATATATCCACATGTATACTACATCAAAGCGTAGTCACAAGGAACAAATATCAAGAATATTTGTTCCTTGTGTAGCTTCTCACTAACATTTGACTCAATGGTGGAAGTGTTGAAAAGCAACATGTTATGCTTTAATTAAACGTAATTAAAATGTGGGTTCTTCTGAAAAATGTGCTGATACGAAGTAAGAAGGATTTTAATCTAGTGCAATCTATAAAAATAGAAGAAAGAAATATGTATCCAGCACCAGAAAACATAATTATGAACAAAAACAACTAACTCAGACAAATGAGTTGGTAGATACACAACTAGATGAGATATTTAGAGGTAAGACGATGTAAATTAAGTTCAAAGATCATGCCAGTTTTCTAATTTAGATGCAAATTTGCTGCTTTAAGTTTCTGCTGCACTGCATTCTAACTTCTATTCCTAATAGTAACAATTCATTTGTTTTGTTCTTTGTAACAAAGTAAGATATTAACATGCAGGCTGCGTTTCAGCCCAGTATTAAAATGAGTTGAACAAAGCGGGTCAAAATGAGCCCGCTTAATAAAATAAGTGGGTTATTAATCTGTCCGAATCTAAACAGGCTGGGTGGGTTATGATTTTGGGCTGATTTTATAGTATCTTGTTTTCAAAGTAAACAAGCTCAGTTATTTACCTCATTGAGTTTGAGATGACGTGTTAAAGTATCATTACTATTATTATCATATTCTTCAATTAGATCACTGGTGTTGTTTCTTTTACTTGGGTTATCTTCACTATTTTTGTTTTCAGTACTACTCTTTTCTACAATATTTTTACAATAGCTTTTACTCTTGTATATGCCAAACCTGTTTTCGAAAATGTTTTTCTTGATCCGAGGGTCTATCAGGAACCTCTCTACAAGGTTGGGGTAAGGTCTGTGTACACCCCAACCTTCCCAGACCCCACTAGGTATGTCATTGTAGAAGATCTAGCTTCTCGTTTGGTAGAAATTAAGGGCACAAAGTGTATAAGCTAATTTGGACATGGAACTTTGATAAACCACCTGTGCTCGTGTATACAATTATCTTTAATACCTTACCTTTATCTTTTATTTTTTGCTTTCTATGCATTTCATAATGATAAAGTAAGTTACTGTCCAGCAAGTGATCTGTTTGAATTTAGTTGCATTTCATAATGAATTTAATTCTCCTGCAGGTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGGGTATGTGCAAACCCGCCGTTCTTTTTCAACTGAGGCTATTTTAACTAAGACTTATGAAAACTATTTTGCAGCTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTATATCCTTTAACGAGTGAAAATTATTGTTGTGAATTTAACGATTTACCTTCTTTTTATAATTCTAATTTTGAGGAAAAGAAACTAATTTATGAGGGAAATTCAGTATCATGATCTTCCTATTTTTTCTCAGTCATCTTCATTCCAGAAAATAATCTTGGGGCAGAGAAGCAGTACCTGTTGCTTTAATCAGTAAGCTGACAAAACCAGCAGTTTGCGAGACACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTACTTGCTAAAGTTGCGTGACTTCACTTTCAATGCCACACCCGTGTCGGATTCTCCAAAAATCCACTACTTTTGGAGAATCCGACATGCACCCATTGTCATTTATGAAGAGTCTGAGCAACATAGGTTACTTGAGCCTAGTGCTGTTTGTAGATTATAGATACTTCTGCTCTACACCAACAAAGTTGTCACTTGTCATGTATCTCTTTTTTTTAATATCCGATCAGTGGTGCAACATTCAGTGCTTGGTTGATAATGGGCACACTCCTTTATACTTTCTCCACTTAAACAACAACAACAACAAACCCTGTGTGATCCCACAAGTGGGGTCTGGGAAGGGTGGGGTATACCGTATACGCAGACCTTACCTTACCTTTATGGTGGGGTAAAGTTGTTTTCGATAGACTCTCGGCTCAAAAATGGGAAAGAGTGTTTTACAAAACAGGTTTGAAAAATACAAGAGTAGGAGAACTATGATGCAACTATCAAAGAAAAGAAAAATATCGACAACAAAATAGAAAAGATAAGCAAAGTAAAAGAAATAACAGTAGTTCTAAATCTTAAAGAAAAAGGTAACGATACAACAAGAATTATAGTACTGATAAGTATAAGAAGGAGAAAATAATGAACTTCTCCACTTACATACCAGTTCTTTATTTGCAGTGGAATATATACCCGTGACATGCGCCTGACCCACATATCATGACATCACACACTATGTTCTCACCTTTAGACCAAAACCTTGGTGGCCAAAGTTGTCGTGCGTCTTATATCCTTTTGCACTTGAATCTACAAAAATATTACTATACAAGAACCTCTGAAATAAAAGAAAATGTGCAGGGGTCCAAGCCATGAACTCTATCTTCATGTAGAAATTAAATATTGATGAAGTCTAAAATCCTTTTCTGTAAATGAATTTAGGGTTGATCTTTGTCATCAGTCAAAT</genome_strand>
        <mrna_strand>GCAAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAATATCGTTTTGGATACCATTTCATTTTCTTTTTTACTT-CTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATGC--ATAT--ATATATATATATATATATATATATATATATATATATACAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGGGTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCACTTGATGATTGGATCTTCAAATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAAGGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTGGTTATGG.......................................................................CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGATCTTTGTCATCAGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g29950" ref_strand="+" ref_description="C2_At1g29950">
      <seq>cagtgagagaaaacgccggcaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccaggaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatctcctgtgtggtatgggtaacttcgcttcctttatcaccatctcagtcgaagtgattatgaaccctagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttactgctctggagggggtaacgtaacgtagaatatggtcctttgtctggcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgcaaactctattaaggtatttgaataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143103" stop="144156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143403" g_stop="143856" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="C2_At1g29950" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g29950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143403" e_stop="143856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</genome_strand>
        <mrna_strand>CAGTGAGAGAAAACGCCGGCAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGGAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATCTCCTGTGTGGTATGGGTAACTTCGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCCTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTACTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCTGGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCAAACTCTATTAAGGTATTTGAATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6750" PGL_stop="10351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6750" e_stop="6807"/>
            <exon e_start="6892" e_stop="7080"/>
            <exon e_start="7584" e_stop="7644"/>
            <exon e_start="8188" e_stop="8389"/>
            <exon e_start="8538" e_stop="8659"/>
            <exon e_start="8764" e_stop="8868"/>
            <exon e_start="10088" e_stop="10351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.971"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="6750" e_stop="6807" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6892" e_stop="7080" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7584" e_stop="7644" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="8188" e_stop="8389" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="8538" e_stop="8659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="8764" e_stop="8868" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219"/>
          </intron>
          <exon e_serial="7" e_score="0.864">
            <gDNA_exon_boundary e_start="10088" e_stop="10351" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6750" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6791" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g34470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA : GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG : GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</gDNA_template>
            <first_frame> T  T  I  *  M  T  T  T  T  I  I  I  M  T  M  T  I  T  M   : R  T  Q  K  R  H  H  G  *  E  Q  M  G  K  Y  T  I  V  M  M  G  W  L  L  T  L  M  N  L  F  I  H  L  A  T  L  A  E  G  H  L  H  L  M  T  G  I  S  V  K  E  P  L  L  L  E  L  V  A  L  L  V  L   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W  H  Q  L  W  G  Q  I  C  P  S  W  S  V  M  H  F  R  C  G  M  V  A  L  L  F  L  L  R :   *  S  M  G  L  A  *  R  T  *  *  T  I  S  Y  N  P  G  K  L  Q  Q  A  I  R  S  A  N  *  K  L  H  L  N  I  V  D  L  L  A  Y  P  V  L  L  Y  N  I  Q  F  P  C  F  W  T  N  I  I  C  L  L  N  N  A  C  Y  V  Q  A  P  S  I  Y  K  F  L  Y  L  I  W  F  V  *  S  I  I  N   </first_frame>
            <second_frame>  P  P  Y  E  *  P  P  P  P  S  S  S  *  P  *  P  *  P  *  :  G  H  K  S  D  I  M  G  R  S  R  W  E  S  I  P  *  S  *  W  V  G  S  S  L  S  *  T  Y  L  F  T  W  L  L  *  Q  K  G  T  S  T  *  *  Q  E  F  Q  *  K  S  L  Y  Y  W  N  W  W  P  C  W  Y  W  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  T  S  C  G  G  R  F  V  R  H  G  A  *  C  T  S  D  A  G  W  W  P  F  C  F  C  S   : G  E  A  W  G  W  R  R  G  H  S  E  P  Y  L  T  I  L  G  S  C  N  R  Q  *  E  A  L  I  E  N  F  T  *  T  L  W  I  F  W  L  I  Q  C  Y  Y  I  T  F  N  F  P  V  S  G  L  I  *  S  V  Y  *  I  M  L  V  M  Y  K  H  L  V  F  I  S  S  Y  I  *  F  G  L  F  D  Q  S  L  I  </second_frame>
            <third_frame>   H  H  M  N  D  H  H  H  H  H  H  H  D  H  D  H  N  H  E :   D  T  K  A  T  S  W  V  G  A  D  G  K  V  Y  H  S  H  D  G  L  A  P  H  S  H  E  P  I  Y  S  P  G  Y  F  S  R  R  A  P  P  L  N  D  R  N  F  S  E  R  A  F  T  I  G  I  G  G  P  V  G  T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A  P  A  V  G  A  D  L  S  V  M  E  R  D  A  L  Q  M  R  D  G  G  P  F  V  F  A  Q  :  V  K  H  G  V  G  V  E  D  I  V  N  H  I  L  Q  S  W  E  V  A  T  G  N  K  K  R  *  L  K  T  S  L  E  H  C  G  S  F  G  L  S  S  A  I  I  *  H  S  I  S  L  F  L  D  *  Y  N  L  S  T  E  *  C  L  L  C  T  S  T  *  Y  L  *  V  P  I  F  N  L  V  C  L  I  N  H  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6752" stop="6807"/>
                    <exon start="6892" stop="7080"/>
                    <exon start="7584" stop="7644"/>
                    <exon start="8188" stop="8389"/>
                    <exon start="8538" stop="8659"/>
                    <exon start="8764" stop="8868"/>
                    <exon start="10088" stop="10171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHMNDHHHHHHHDHDHNHEDTKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTIGIGGPVGTGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLSVMERDALQMRDGGPFVFAQVKHGVGVEDIVNHILQSWEVATGNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="44004" PGL_stop="42212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44004" e_stop="43944"/>
            <exon e_start="43847" e_stop="43647"/>
            <exon e_start="42472" e_stop="42212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="44004" e_stop="43944" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="43847" e_stop="43647" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="42472" e_stop="42212" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44004" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAAC : ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT : GTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTA</gDNA_template>
            <first_frame> K  P  P  Y  I  L  C  P  H  *  K  S  H  F  S  I  L  N  Q  Q   : H  G  R  K  *  N  *  G  G  K  R  S  R  Y  W  S  E  E  E  N  I  C  C  W  C  N  W  E  H  R  E  E  D  C  *  A  A  F  G  *  G  F  C  C  *  S  W  G  S  *  C  *  Q  G  *  I  C  F  T  R  S  K  P  F  S  S  N   : C  E  N  R  C  D  R  G  I  S  *  T  S  R  C  H  W  *  *  F  Q  C  G  N  M  C  Y  R  F  P  A  F  V  E  L  V  D  T  L  E  G  *  S  T  S  I  H  K  I  V  V  F  T  R  S  F  T  P  D  L  D  D  Q  Q  S  E  I  F  C  D  R  L  D  G  S  F  R  L  I  L  C  N  A  R  L  F  S  </first_frame>
            <second_frame>  N  L  H  T  F  S  V  H  T  K  N  H  I  F  P  S  *  T  N  N  :  M  E  G  S  E  I  K  E  E  K  E  A  G  I  G  Q  K  K  K  I  F  V  A  G  A  T  G  N  T  G  K  R  I  V  E  Q  L  L  A  K  G  F  A  V  K  A  G  V  R  D  V  D  K  A  K  S  V  L  P  E  A  N  P  F  L  Q  I  :  V  K  T  D  V  T  E  G  S  A  K  L  A  D  A  I  G  D  D  S  N  A  V  I  C  A  T  G  F  Q  P  S  W  N  L  L  T  P  W  K  V  S  Q  L  Q  S  T  K  *  *  Y  L  P  D  P  S  R  L  I  L  M  I  S  K  V  R  Y  F  V  I  G  L  M  G  V  S  V  S  F  Y  A  M  H  V  F  S  V </second_frame>
            <third_frame>   T  S  I  H  S  L  S  T  L  K  I  T  F  F  H  L  K  P  T  T :   W  K  E  V  K  L  R  R  K  K  K  Q  V  L  V  R  R  R  K  Y  L  L  L  V  Q  L  G  T  Q  G  R  G  L  L  S  S  F  W  L  R  V  L  L  L  K  L  G  F  V  M  L  T  R  L  N  L  F  Y  P  K  Q  T  L  F  F  K  L :   *  K  P  M  *  Q  R  D  Q  L  N  *  P  M  P  L  V  M  I  P  M  R  *  Y  V  L  Q  V  S  S  L  R  G  T  C  *  H  L  G  R  L  V  N  F  N  P  Q  N  S  S  I  Y  Q  I  L  H  A  *  S  *  *  S  A  K  *  D  I  L  *  *  A  *  W  E  F  P  S  H  F  M  Q  C  T  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43952" stop="43944"/>
                    <exon start="43847" stop="43647"/>
                    <exon start="42472" stop="42326"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMEGSEIKEEKEAGIGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKTDVTEGSAKLADAIGDDSNAVICATGFQPSWNLLTPWKVSQLQSTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="62410" PGL_stop="61252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62410" e_stop="61834"/>
            <exon e_start="61309" e_stop="61252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.947"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="62410" e_stop="61834" e_length="577"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61309" e_stop="61252" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62410" stop="61905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cTOB-9-H18" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62231" stop="61834"/>
              <exon start="61309" stop="61252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG : ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTT</gDNA_template>
            <first_frame> L  S  L  S  K  N  S  S  N  T  L  A  S  L  T  S  K  S  F  L  L  L  L  L  L  L  L  L  A  P  P  P  Q  I  *  K  P  I  S  V  N  N  G  S  N  P  I  S  I  I  S  S  V  S  T  R  T  S  T  K  K  H  P  P  V  H  Q  C  E  V  I  G  C  *  K  S  A  F  N  S  N  S  F  C  I  Y  C  F  C  S  K  K  R  E  R  P  K  E  K  G  C  Y  N  W  D  G  S  C  F  C  V  W  E  *  C  R  Y  L  L  *  Q  T  F  G  W  *  K  W  D  F  A  Y  *  S  F  *  C  F  *  I  S  Y  E  I  W  G  T  N  S  W  V  Y  I  *  R  V  Y  *  W  E  E  *  *  E  A  *  *  L  F  K  V  C  H  C  C  W  Q  E  S  F  G  K  C  R  S  W  W  *  *  I  R  K   : D  *  *  R  E  S  R  C  S  C  R  N  R  N  G  W  S  Y  S   </first_frame>
            <second_frame>  F  L  S  L  K  I  V  V  I  H  S  H  R  *  H  R  K  A  F  C  C  C  F  F  F  F  F  L  L  R  H  L  K  S  E  N  P  F  Q  L  T  M  E  A  I  Q  S  L  S  F  R  P  S  P  L  E  P  L  R  K  N  I  P  Q  F  T  N  V  R  S  L  G  A  K  R  V  P  L  T  V  T  A  S  A  S  T  V  S  A  P  K  R  E  K  D  P  K  K  R  V  V  I  T  G  T  G  L  V  S  V  F  G  N  D  A  D  T  Y  Y  D  R  L  L  A  G  E  S  G  I  S  L  I  D  R  F  D  A  S  K  F  P  T  R  F  G  G  Q  I  R  G  F  T  S  E  G  Y  I  D  G  K  N  D  R  R  L  D  D  C  L  R  Y  A  I  V  A  G  K  K  A  L  E  N  A  D  L  G  G  D  R  L  E  K  :  I  D  K  E  R  A  G  V  L  V  G  T  G  M  G  G  L  T  V  </second_frame>
            <third_frame>   F  S  L  *  K  *  *  *  Y  T  R  I  V  N  I  E  K  L  F  A  A  A  S  S  S  S  S  C  S  A  T  S  N  L  K  T  H  F  S  *  Q  W  K  Q  S  N  L  Y  H  F  V  R  L  H  S  N  L  Y  E  K  T  S  P  S  S  P  M  *  G  H  W  V  L  K  E  C  L  *  Q  *  Q  L  L  H  L  L  F  L  L  Q  K  E  R  K  T  Q  R  K  G  L  L  *  L  G  R  V  L  F  L  C  L  G  M  M  P  I  L  T  M  T  D  F  W  L  V  K  V  G  F  R  L  L  I  V  L  M  L  L  N  F  L  R  D  L  G  D  K  F  V  G  L  H  L  K  G  I  L  M  G  R  M  I  G  G  L  M  I  V  *  G  M  P  L  L  L  A  R  K  L  W  K  M  Q  I  L  V  V  I  D  *  K  R :   L  I  K  R  E  Q  V  F  L  *  E  Q  E  W  V  V  L  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62367" stop="61834"/>
                    <exon start="61309" stop="61253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKAFCCCFFFFFLLRHLKSENPFQLTMEAIQSLSFRPSPLEPLRKNIPQFTNVRSLGAKRVPLTVTASASTVSAPKREKDPKKRVVITGTGLVSVFGNDADTYYDRLLAGESGISLIDRFDASKFPTRFGGQIRGFTSEGYIDGKNDRRLDDCLRYAIVAGKKALENADLGGDRLEKIDKERAGVLVGTGMGGLTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="71373" PGL_stop="69985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71373" e_stop="69985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="71373" e_stop="69985" e_length="1389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71373" stop="69985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g40480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGAGAAATCCTGACAAATGTGCCACTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTACAGTACAACTTGCCTATGCACAAACTAGAAAACATCTCTCTGATGAAGCAGTTGAGATTGTGCTCATCATATTTGGTAAAATCAGGTTTGAATGTGAAGAGAATTTTTAAATAGCTG</gDNA_template>
            <first_frame> F  E  C  S  N  M  K  L  Q  T  T  V  T  V  S  Q  P  E  M  M  S  V  D  A  P  R  E  I  L  T  N  V  P  L  P  A  N  G  Y  S  F  L  V  K  L  N  D  A  Y  R  H  K  Y  K  S  A  K  N  R  A  I  F  L  F  D  C  L  V  D  P  P  Y  V  G  Y  V  K  P  W  V  D  L  D  T  G  N  S  Y  C  L  F  F  P  Y  S  P  E  S  L  V  L  A  T  P  K  S  G  G  I  K  Q  D  L  A  V  T  I  K  A  S  L  I  G  E  Q  N  I  S  G  S  A  S  A  L  F  V  G  G  F  I  I  P  G  T  E  G  D  S  L  Q  L  N  L  T  P  Q  F  N  R  S  V  L  T  V  V  G  N  T  D  V  S  I  Y  W  H  D  R  E  R  L  A  V  R  P  I  H  G  E  D  S  Q  G  R  S  R  A  Q  Y  E  I  K  I  R  R  A  E  K  F  K  D  K  L  I  F  T  L  P  A  T  G  Q  I  T  E  V  N  V  N  Y  E  P  E  E  R  R  A  T  I  I  N  L  N  L  W  A  T  A  A  A  C  F  I  L  L  I  V  T  A  T  V  F  I  S  Y  L  D  Q  P  V  R  S  R  P  S  A  P  P  G  T  P  S  V  A  A  P  V  T  P  E  R  S  S  P  A  G  V  S  E  H  S  P  R  T  P  Q  P  F  L  D  Y  V  R  R  T  I  D  E  T  P  Y  Y  R  Q  D  F  R  R  R  A  N  P  Q  N  T  Y  *  H  I  V  G  P  I  H  L  F  P  T  P  P  F  A  F  A  R  Y  A  K  W  F  L  R  *  L  P  K  V  L  N  L  A  A  N  F  T  M  I  V  L  *  F  C  W  C  N  F  V  *  S  I  A  S  C  V  S  L  D  T  F  *  R  S  S  L  I  C  Q  K  I  L  M  S  C  F  L  L  E  K  A  I  Q  Q  H  F  L  Q  Y  N  L  P  M  H  K  L  E  N  I  S  L  M  K  Q  L  R  L  C  S  S  Y  L  V  K  S  G  L  N  V  K  R  I  F  K  *  L </first_frame>
            <second_frame>  L  S  V  R  I  *  N  C  K  L  Q  L  R  C  H  S  Q  R  *  C  L  L  M  L  Q  E  K  S  *  Q  M  C  H  F  L  Q  M  D  I  A  F  L  *  N  S  M  M  L  I  A  T  S  I  N  L  L  K  T  G  Q  F  S  C  L  I  A  W  L  I  H  L  M  L  V  M  *  S  R  G  L  I  L  I  R  V  I  H  I  A  F  S  S  L  T  L  L  K  V  W  Y  L  P  L  Q  S  Q  E  A  L  N  R  I  *  L  L  L  L  R  H  H  *  S  E  S  R  I  S  Q  D  L  H  Q  H  F  L  L  E  V  S  S  F  R  E  R  K  E  I  H  C  S  *  I  *  P  H  N  L  T  G  V  S  S  L  L  *  E  T  Q  M  *  V  S  T  G  M  I  G  N  D  *  L  S  D  P  Y  M  E  K  I  L  K  E  E  A  V  H  S  M  R  S  K  F  A  E  Q  R  S  L  K  T  N  *  F  L  H  S  Q  Q  L  V  R  S  R  K  L  M  L  T  M  N  L  K  R  E  E  Q  Q  L  L  T  L  I  Y  G  L  L  Q  L  L  V  S  S  C  L  *  S  Q  P  L  Y  S  F  L  T  W  I  N  L  *  D  P  D  H  L  L  L  L  A  H  Q  V  *  L  H  L  *  L  L  S  E  A  V  L  L  E  *  A  N  I  H  L  G  H  L  N  L  S  W  I  M  L  G  G  Q  L  M  K  L  H  T  T  D  K  T  L  G  G  G  L  T  L  R  T  L  T  S  I  L  W  G  Q  F  T  S  S  L  L  P  L  L  P  L  L  D  M  P  N  G  F  S  G  N  C  Q  R  S  *  I  W  L  Q  T  L  Q  *  *  C  C  S  F  V  G  V  I  L  C  R  V  L  Q  A  V  C  H  W  I  L  S  R  E  A  A  S  S  A  K  K  F  L  C  P  A  F  C  W  K  R  Q  Y  N  S  T  F  Y  S  T  T  C  L  C  T  N  *  K  T  S  L  *  *  S  S  *  D  C  A  H  H  I  W  *  N  Q  V  *  M  *  R  E  F  L  N  S   </second_frame>
            <third_frame>   *  V  F  E  Y  E  T  A  N  Y  S  Y  G  V  T  A  R  D  D  V  C  *  C  S  K  R  N  P  D  K  C  A  T  S  C  K  W  I  *  L  S  C  K  T  Q  *  C  L  S  P  Q  V  *  I  C  *  K  Q  G  N  F  L  V  *  L  P  G  *  S  T  L  C  W  L  C  E  A  V  G  *  S  *  Y  G  *  F  I  L  P  F  L  P  L  L  S  *  K  F  G  T  C  H  S  K  V  R  R  H  *  T  G  F  S  C  Y  Y  *  G  I  T  D  R  R  A  E  Y  L  R  I  C  I  S  T  F  C  W  R  F  H  H  S  G  N  G  R  R  F  I  A  V  K  S  N  P  T  I  *  Q  E  C  P  H  C  C  R  K  H  R  C  E  Y  L  L  A  *  S  G  T  T  S  C  Q  T  H  T  W  R  R  F  S  R  K  K  P  C  T  V  *  D  Q  N  S  Q  S  R  E  V  *  R  Q  T  D  F  Y  T  P  S  N  W  S  D  H  G  S  *  C  *  L  *  T  *  R  E  K  S  N  N  Y  *  P  *  F  M  G  Y  C  S  C  L  F  H  L  A  Y  S  H  S  H  C  I  H  F  L  L  G  S  T  C  E  I  P  T  I  C  S  S  W  H  T  K  C  S  C  T  C  N  S  *  A  K  Q  S  C  W  S  K  R  T  F  T  S  D  T  S  T  F  L  G  L  C  *  E  D  N  *  *  N  S  I  L  Q  T  R  L  *  E  E  G  *  P  S  E  H  L  L  A  Y  C  G  A  N  S  P  L  P  Y  S  P  F  C  L  C  *  I  C  Q  M  V  S  Q  V  I  A  K  G  L  E  S  G  C  K  L  Y  N  D  S  V  V  V  L  L  V  *  F  C  V  E  Y  C  K  L  C  V  I  G  Y  F  L  E  K  Q  P  H  L  P  K  N  S  Y  V  L  L  S  A  G  K  G  N  T  T  A  L  S  T  V  Q  L  A  Y  A  Q  T  R  K  H  L  S  D  E  A  V  E  I  V  L  I  I  F  G  K  I  R  F  E  C  E  E  N  F  *  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71373" stop="70366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FECSNMKLQTTVTVSQPEMMSVDAPREILTNVPLPANGYSFLVKLNDAYRHKYKSAKNRAIFLFDCLVDPPYVGYVKPWVDLDTGNSYCLFFPYSPESLVLATPKSGGIKQDLAVTIKASLIGEQNISGSASALFVGGFIIPGTEGDSLQLNLTPQFNRSVLTVVGNTDVSIYWHDRERLAVRPIHGEDSQGRSRAQYEIKIRRAEKFKDKLIFTLPATGQITEVNVNYEPEERRATIINLNLWATAAACFILLIVTATVFISYLDQPVRSRPSAPPGTPSVAAPVTPERSSPAGVSEHSPRTPQPFLDYVRRTIDETPYYRQDFRRRANPQNTY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70222" stop="69992"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCVEYCKLCVIGYFLEKQPHLPKNSYVLLSAGKGNTTALSTVQLAYAQTRKHLSDEAVEIVLIIFGKIRFECEENF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="116677" PGL_stop="126297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116677" e_stop="117097"/>
            <exon e_start="121152" e_stop="121202"/>
            <exon e_start="123276" e_stop="123309"/>
            <exon e_start="124866" e_stop="124952"/>
            <exon e_start="125024" e_stop="125075"/>
            <exon e_start="126273" e_stop="126297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.568" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="116677" e_stop="117097" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="117098" i_stop="121151" i_length="4054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121152" e_stop="121202" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="121203" i_stop="123275" i_length="2073"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123276" e_stop="123309" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.541">
            <gDNA_intron_boundary i_start="123310" i_stop="124865" i_length="1556"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="124866" e_stop="124952" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.568">
            <gDNA_intron_boundary i_start="124953" i_stop="125023" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125024" e_stop="125075" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="125076" i_stop="126272" i_length="1197"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="126273" e_stop="126297" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116677" stop="117097"/>
              <exon start="121152" stop="121202"/>
              <exon start="123276" stop="123309"/>
              <exon start="124866" stop="124952"/>
              <exon start="125024" stop="125075"/>
              <exon start="126273" stop="126297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR82" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG : TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA : GTATTTCACTTGATGATTGGATCTTCAAATTTGG : GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGG : CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG : GGTTGATCTTTGTCATCAGTCAAAT</gDNA_template>
            <first_frame> A  N  S  K  K  K  I  P  S  R  L  H  K  E  K  K  K  *  G  E  L  G  E  Y  R  F  G  Y  H  F  I  F  F  F  T  Y  F  K  T  C  L  L  *  V  F  W  V  H  I  Y  T  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  K  L  I  I  I  L  C  V  H  V  F  F  S  V  L  E  G  K  G  L  R  R  I  E  A  V  D  G  F  L  K  G  K  E  K  E  *  E  E  H  D  *  V  E  R  R  D  L  L  S  *  G  F  N  G  S  E  C  G  S  C  F  C  R  C  R  Y  C  S  S  C  F  C  S   : V  N  E  N  S  L  S  E  Y  T  Q  W  L  D  S  S  E   : S  I  S  L  D  D  W  I  F  K  F  G :   L  F  P  L  F  Y  F  D  N  C  C  R  M  *  W  L  D  F  L  V  A  L  L  W  L  C  R  Y  G :   F  P  Q  N  S  F  P  C  G  I  S  S  S  P  F  F  L  :  G  *  S  L  S  S  V  K  </first_frame>
            <second_frame>  Q  I  Q  R  K  R  Y  H  R  G  C  I  K  R  K  K  S  K  G  N  *  E  S  I  V  L  D  T  I  S  F  S  F  L  L  T  S  R  L  V  C  C  K  C  F  G  Y  I  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  S  L  S  S  Y  C  V  S  T  F  F  S  L  Y  *  R  G  K  G  *  E  G  L  R  Q  W  M  V  F  *  K  V  K  K  K  S  E  K  N  M  I  E  W  R  E  G  T  C  Y  P  K  A  L  M  G  V  N  V  G  L  A  S  V  D  A  V  I  A  V  L  A  F  A  Q  :  L  M  R  I  H  S  R  N  T  H  N  G  W  T  R  Q  K  :  V  F  H  L  M  I  G  S  S  N  L   : G  Y  F  L  Y  F  I  L  T  I  V  A  A  C  N  G  W  I  F  W  S  H  S  C  G  F  V  V  M   : A  F  P  K  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   V  D  L  C  H  Q  S  N </second_frame>
            <third_frame>   K  F  K  E  K  D  T  I  E  A  A  *  R  E  K  K  V  R  G  I  R  R  V  S  F  W  I  P  F  H  F  L  F  Y  L  L  Q  D  L  F  V  V  S  V  L  G  T  Y  I  Y  I  Y  T  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  A  Y  H  H  I  V  C  P  R  F  F  L  C  I  R  G  E  R  A  K  K  D  *  G  S  G  W  F  F  K  R  *  R  K  R  V  R  R  T  *  L  S  G  E  K  G  L  V  I  L  R  L  *  W  E  *  M  W  V  L  L  L  S  M  P  L  L  Q  F  L  L  L  L  S :   *  *  E  F  T  L  G  I  H  T  M  A  G  L  V  R  K :   Y  F  T  *  *  L  D  L  Q  I  W  :  V  I  S  F  I  L  F  *  Q  L  L  P  H  V  M  V  G  F  S  G  R  T  P  V  A  L  S  L  W  :  L  S  P  K  F  F  S  L  R  H  F  F  F  S  F  L  S   : G  L  I  F  V  I  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116966" stop="117097"/>
                    <exon start="121152" stop="121202"/>
                    <exon start="123276" stop="123309"/>
                    <exon start="124866" stop="124952"/>
                    <exon start="125024" stop="125075"/>
                    <exon start="126273" stop="126297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKKKSEKNMIEWREGTCYPKALMGVNVGLASVDAVIAVLAFAQLMRIHSRNTHNGWTRQKVFHLMIGSSNLGYFLYFILTIVAACNGWIFWSHSCGFVVMAFPKILFLAAFLLLLSFWVDLCHQSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="143403" PGL_stop="143856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143403" e_stop="143856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="143403" e_stop="143856" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143403" stop="143856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g29950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</gDNA_template>
            <first_frame> Q  *  E  K  T  Q  E  T  *  E  D  G  Q  G  I  K  G  N  R  P  W  C  Q  Q  D  E  Y  C  H  R  S  *  *  S  C  Q  I  P  Q  V  T  *  G  G  S  A  E  A  W  S  R  *  S  E  D  I  C  L  I  S  F  V  V  *  V  I  S  L  P  L  S  P  S  H  D  Y  E  P  *  S  Y  L  L  L  M  *  R  R  T  T  Y  T  V  V  L  L  S  C  C  S  G  G  G  N  V  T  *  N  M  V  L  C  P  A  I  G  Q  *  V  C  C  S  S  *  L  L  Y  L  I  S  H  S  S  I  *  Y  V  S  T  S  C  K  L  Y  *  G  I  *  I  I  S  </first_frame>
            <second_frame>  S  E  R  K  R  R  K  L  K  K  M  V  K  A  L  K  G  I  V  P  G  A  S  R  M  N  T  V  T  V  L  D  E  A  V  R  Y  L  K  S  L  K  V  E  V  Q  K  L  G  V  D  N  L  K  T  Y  A  *  Y  P  L  W  Y  R  *  F  R  F  L  Y  H  R  H  M  I  M  N  P  S  H  I  F  C  L  C  E  E  E  L  L  I  P  S  Y  C  *  V  A  A  L  E  G  V  T  *  R  R  I  W  S  F  V  Q  R  *  D  N  K  S  A  V  V  A  S  C  Y  I  *  F  L  I  L  A  Y  S  M  F  P  L  V  A  N  S  I  K  A  F  E  *  F  L </second_frame>
            <third_frame>   V  R  E  N  A  G  N  L  R  R  W  S  R  H  *  R  E  S  S  L  V  P  A  G  *  I  L  S  P  F  L  M  K  L  S  D  T  S  S  H  L  R  W  K  C  R  S  L  E  S  I  I  *  R  H  M  P  D  I  L  C  G  I  G  N  F  A  S  F  I  T  V  T  *  L  *  T  L  V  I  S  F  A  Y  V  K  K  N  Y  L  Y  R  R  I  A  E  L  L  L  W  R  G  *  R  N  V  E  Y  G  P  L  S  S  D  R  T  I  S  L  L  *  *  L  A  A  I  S  N  F  S  F  *  H  I  V  C  F  H  *  L  Q  T  L  L  R  H  L  N  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 38 chains have been computed
$ 
$ memory statistics:
$ 18032 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2254 bytes was the average size of a spliced alignment
$ 11856 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1976 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:16:42
-->
