<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:18:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g16210" ref_strand="+" ref_description="C2_At5g16210">
      <seq>tttcaattggtgtgtgatccatctggagtggtagtggaaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctggctggtgttttaggatctcctaggaagcatgaactactgacagagtacttgagaaatctcttgattcaaacttcaggacaagagagtcagacagtgaagcgcgagattttcttttctgttcgctttctttgcactttcgatgaacatcacaatatgatttttaacatcctctgggaaatggttgtgagttctgaaataacatgaatgcaacagctgccaatcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="198" g_stop="335" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="336" i_stop="421" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="422" g_stop="636" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="353" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="752" g_stop="869" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="471" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="956" g_stop="1088" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="604" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1184" g_stop="1379" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="800" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1380" i_stop="1457" i_length="78">
            <donor d_prob="0.431" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1458" g_stop="1558" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="900" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="C2_At5g16210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g16210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="198" e_stop="335"/>
          <exon e_start="422" e_stop="636"/>
          <exon e_start="752" e_stop="869"/>
          <exon e_start="956" e_stop="1088"/>
          <exon e_start="1184" e_stop="1379"/>
          <exon e_start="1458" e_stop="1558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTGGTTTGTGCCATTTTAATAAAGGCATTACAGTTCTGTGTCTGAACTCCTTAGATGATGGCTGACTATATTTTTCTGCAGCACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</genome_strand>
        <mrna_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG..............................................................................CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAAT-AACATGAATGCAACAGCTGCCAATCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="U146494" ref_strand="+" ref_description="U146494">
      <seq>cttattttcaaacccccacgcgcctctcttggcctccacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaaaatatgaacctttgtggataaatggaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggtttaggagaagaaagggcttagtgtggtgattcctaaattacagagggaaaacaccattaattaatcacctgaggaagttaacatgtgtctgtttatgcaaacaagggatgagcattaactgcagttcctgtgagcgtaattgtaggtgtaaatggttgagttatctgtgccatcaagatataaagtggtgcgggagaaataaagtaattagtgcatcccttttccccctgtataatcaaatgtaacattttgacatgaaaagcttgtagttttatactcatatgagcttccatacttgtatattatgcaagatgtgcaactgtagtatcagaagctcttgcatgtatcatcacctgtgtgtaactgtttgctaaggaaattcgttccatatttttgtaacaaaatctcttcttcttttctcctttagctgtatgatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56174" stop="62543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56474" g_stop="56886" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57959" g_stop="57995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="450" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60763" g_stop="60999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="687" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61086" g_stop="61133" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="735" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61426" g_stop="62243" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="1553" r_length="818" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="U146494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="U146494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56474" e_stop="56886"/>
          <exon e_start="57959" e_stop="57995"/>
          <exon e_start="60763" e_stop="60999"/>
          <exon e_start="61086" e_stop="61133"/>
          <exon e_start="61426" e_stop="62243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAAATCTCTTCTTCTTTTCTCCTTTAGCTGTATGATATTGCT</genome_strand>
        <mrna_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAAATCTCTTCTTCTTTTCTCCTTTAGCTGTATGATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG426-R" ref_strand="+" ref_description="TG426-R">
      <seq>ttcagtaaagattccgacagctgcaataggtaaagcatccctgtgcattccctcaatctgcatttgtacttgatctattaacaatatctatatgcagttgccgcagtttgtatcgcagtgctggccataatatcagttccaatcgtctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="64006" stop="64758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64306" g_stop="64458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="TG426-R" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="TG426-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64306" e_stop="64458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAAGATTCCGACAGCTGCAATAGGTAAAGCATCCCTGTGCATTCCCTCAATCTGCATTTGTACTTGATCTATTAACAATATCTATATGCAGTTGCCGCAGTTTGTATCGCAGTGCTGGCCATAATATCAGTTCCAATCATCTATTGC</genome_strand>
        <mrna_strand>TTCAGTAAAGATTCCGACAGCTGCAATAGGTAAAGCATCCCTGTGCATTCCCTCAATCTGCATTTGTACTTGATCTATTAACAATATCTATATGCAGTTGCCGCAGTTTGTATCGCAGTGCTGGCCATAATATCAGTTCCAATCGTCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG426-F" ref_strand="+" ref_description="TG426-F">
      <seq>gcctgcagtaaaagatggttctgaggcagcatggtgtttccaggaggattcgttgttaccattgtgatcaacgatccagagtgtagtgcacctatggcgttatccttcatttaccacaaggctacgaccataggtgttagtgtaattaatcaaatcaaagtgtggtcaggttgtgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="66338" stop="65561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66040" g_stop="65861" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="TG426-F" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="TG426-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66040" e_stop="65861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAGGTTGTGCCTGC</genome_strand>
        <mrna_strand>GCCTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAGGTTGTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g16160" ref_strand="+" ref_description="C2_At5g16160">
      <seq>gtcgggtctggagctgtttcaatggaagaggacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttacttgtaaatgtatttgttaagtagtactaatatcaatttactacggttaagtgatttaattaattattatatatatgaattctcaatgatagttatatatttattgatgatttggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="86497" stop="89547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86797" g_stop="86928" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88397" g_stop="88457" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="193" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88583" g_stop="88772" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="383" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88967" g_stop="89247" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="664" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="C2_At5g16160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g16160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86797" e_stop="86928"/>
          <exon e_start="88397" e_stop="88457"/>
          <exon e_start="88583" e_stop="88772"/>
          <exon e_start="88967" e_stop="89247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</genome_strand>
        <mrna_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g16150" ref_strand="+" ref_description="C2_At5g16150">
      <seq>ctctcttcgaattcatcgaacctcccaatgcaaattctgctgtaattttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtcttcggttcgtccgcaaaggccagatcacacagaattcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatggaatggtattttctcccgaaagtcctcggtggctctatcagcaagggagaatatctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctgaggttatgggtgatttggaagcttctgcccagggttcttcanaaccagatgctgggtggcttgatctattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="99146" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98846" g_stop="98702" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98411" g_stop="98137" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97130" g_stop="97016" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="533" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95307" g_stop="95240" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="734" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94763" g_stop="94664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="834" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94566" g_stop="94454" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="947" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94453" i_stop="93167" i_length="1287">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93166" g_stop="93126" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="988" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93010" g_stop="92875" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="989" r_stop="1124" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="C2_At5g16150" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1126</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g16150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98846" e_stop="98702"/>
          <exon e_start="98411" e_stop="98137"/>
          <exon e_start="97130" e_stop="97016"/>
          <exon e_start="95307" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94664"/>
          <exon e_start="94566" e_stop="94454"/>
          <exon e_start="93166" e_stop="93126"/>
          <exon e_start="93010" e_stop="92875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATGGTAATTTCTCATTACGTATGCTCATAGCAGAAAACAATTTAGAGTTTTGTAACTTTTAAATGATTGGTACATGATTTTATCCGAAGGCCTTTCAAAAGATTTTGGCAAAAGAAGATTCCAACAAGATGTCATGAATGGTTTTATCTAGACCTGATTAGTCCAGAACCAATAGGGTACCCATTTGGTGGTCCTAACATAATTCTGGAGTAGTTTGAGATTAAAGTGGTGGTAGATGTCAGAATTTAGCACCTTGGTGCCTAATTCCCTAGTCTGCTTATTTTTTCGTTTTTTGTAGTACATGAATCTTCTATTAATAATTTACAACTTAAATACAATTATCACTTTAGTTGAATTACTGGTGTATTTCTCTAATTTCATACAGTGGTGAGGTGAGGTCAGTTAAGCTTAAGTTTATTTATTCGGTTCTTTGATGAAAGTTGTAGATGTCTTTGTTTGCCCTTATATAAGCTACCTGGCAGAGTTCAATTGTTTTAAAATTAATTAAGTACTCAGGTTTGCTTATTATCTATTTTCTTCAATCTTTAAAAGTTTTACATTGATTTTATGATTTTTTTTTCATCAGGGAATTTCATTGTGACTTGAGTTTGTTTGTCCTTGAGAAATAATTTGAAGTAAAATGATTAATGTTTAATTTCTATTAGGAGTGTTGTACTCCAGCTTTTGGGTTCTAAAGCAAATAGCAATACTCTGTTTCTGTAGTTTTGACATTTAGTATCCTTTTCAATGTCCCAGATGCCAAAACTGTTCATGCTTAGGGAATATTTTCTCTAATCAACCGTTTTGATTGTATTGGAAAGAACTATAGGGAATATTTTCTCTAATCAACTTTGTTTATGCTATTGGGAAGAATTAAAATCATGTTGTGTACCTTGACTTTTAACTTTTCTAATTGACGCCAGAGCAAGTGGGACCTCACAGGATTACCCCTTCATGTTATTTGATTTACTTATTTGCTTGTTTCTGGGTTTATTGCTTATTCTACTTCCATATCTCTCATCTGCCGTTTGAATGACTACTATGTCTTATTGGCATTTCTAGATGATACTTTTCCATCTAACTTGTTCACAAATGATTAAGGTACTACAACTAGTAGTTGCCAGACTTCAGAAACTCTAACGAGCATGGAATTTCCCAACCTTCGCAGTTTTCGTGTTAATGCTTAAATATTTGTGTTTAAATCCATTAAGTTACATGTCTCCATTTCATATGTCAGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</genome_strand>
        <mrna_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCAAAGGCCAGATCACACAGAATTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCANAACCAGATGCTGGGTGGCTTGATCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="198" PGL_stop="1558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="198" e_stop="335"/>
            <exon e_start="422" e_stop="636"/>
            <exon e_start="752" e_stop="869"/>
            <exon e_start="956" e_stop="1088"/>
            <exon e_start="1184" e_stop="1379"/>
            <exon e_start="1458" e_stop="1558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="198" e_stop="335" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="336" i_stop="421" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="422" e_stop="636" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="752" e_stop="869" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="956" e_stop="1088" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1184" e_stop="1379" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1380" i_stop="1457" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="1458" e_stop="1558" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="198" stop="335"/>
              <exon start="422" stop="636"/>
              <exon start="752" stop="869"/>
              <exon start="956" stop="1088"/>
              <exon start="1184" stop="1379"/>
              <exon start="1458" stop="1558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g16210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG : CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</gDNA_template>
            <first_frame> F  Q  L  V  C  D  P  S  G  V  V  V  E  T  T  I  K  E  L  V  P  A  L  V  N  W  G  K  E  L  D  H  L  L  Q  V  L  L  S  H  A  L  G  S  A  Q  :  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  </first_frame>
            <second_frame>  F  N  W  C  V  I  H  L  E  W  *  W  K  Q  Q  S  R  N  L  F  Q  L  *  *  T  G  G  R  N  W  I  I  Y  Y  K  S  Y  Y  L  M  L  W  A  L  L  S :   V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K </second_frame>
            <third_frame>   S  I  G  V  *  S  I  W  S  G  S  G  N  N  N  Q  G  T  C  S  S  F  S  K  L  G  E  G  I  G  S  F  T  T  S  L  T  I  S  C  F  G  L  C  S   : A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="198" stop="335"/>
                    <exon start="422" stop="636"/>
                    <exon start="752" stop="869"/>
                    <exon start="956" stop="1088"/>
                    <exon start="1184" stop="1379"/>
                    <exon start="1458" stop="1557"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLVCDPSGVVVETTIKELVPALVNWGKELDHLLQVLLSHALGSAQRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="56474" PGL_stop="62243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56474" e_stop="56886"/>
            <exon e_start="57959" e_stop="57995"/>
            <exon e_start="60763" e_stop="60999"/>
            <exon e_start="61086" e_stop="61133"/>
            <exon e_start="61426" e_stop="62243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.507" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56474" e_stop="56886" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.507">
            <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57959" e_stop="57995" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60763" e_stop="60999" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.962">
            <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61086" e_stop="61133" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61426" e_stop="62243" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56474" stop="56886"/>
              <exon start="57959" stop="57995"/>
              <exon start="60763" stop="60999"/>
              <exon start="61086" stop="61133"/>
              <exon start="61426" stop="62243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="U146494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG : GTATGATTACTCTGGATATGGACAATCAACTGGAAAG : CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG : AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT : GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAAATCTCTTCTTCTTTTCTCCTTTAGCTGTATGATATTGCT</gDNA_template>
            <first_frame> L  I  F  K  P  P  R  A  S  L  G  L  H  A  P  P  *  R  R  R  *  G  K  R  G  L  L  Y  D  W  C  S  N  D  K  L  L  *  I  M  G  G  V  T  S  S  I  A  A  K  F  A  F  F  P  P  T  P  P  S  Y  T  V  V  P  D  D  G  K  F  S  I  P  E  V  A  R  R  D  G  V  D  F  L  K  L  R  T  R  R  G  N  E  I  V  A  V  H  V  K  H  P  K  A  S  A  T  M  L  Y  S  H  G  N  A  A  D  L  G  Q  M  F  E  L  F  V  E  L  S  L  R  L  R  V  N  L  M  G :   Y  D  Y  S  G  Y  G  Q  S  T  G  K  :  P  S  E  C  N  T  Y  A  D  I  D  A  V  Y  K  C  L  K  E  Q  Y  E  V  K  D  E  Q  L  I  I  Y  G  Q  S  V  G  S  G  P  T  V  D  L  A  S  R  V  P  N  L  R  G  V  V  L  H  S  P  I  L  S  G  V  R  V  L  Y  P  V  K  R  T  Y  W  F  D  I  Y  K  :  N  I  D  K  I  S  A  V  N  C  P  V  L  V  I  H  :  G  T  A  D  E  V  V  D  Y  S  H  G  K  Q  L  W  E  L  C  N  E  K  Y  E  P  L  W  I  N  G  G  G  H  C  N  L  E  L  Y  P  E  Y  I  K  H  L  K  K  F  V  L  G  L  G  K  P  K  P  A  A  N  G  P  Q  K  A  S  T  E  S  E  N  Q  S  K  P  A  E  S  G  S  T  T  D  T  F  D  L  K  P  D  L  P  E  I  S  R  N  S  L  D  S  R  L  E  K  T  K  K  S  N  K  P  E  K  S  R  M  S  T  D  R  V  D  R  F  R  R  R  K  G  L  V  W  *  F  L  N  Y  R  G  K  T  P  L  I  N  H  L  R  K  L  T  C  V  C  L  C  K  Q  G  M  S  I  N  C  S  S  C  E  R  N  C  R  C  K  W  L  S  Y  L  C  H  Q  D  I  K  W  C  G  R  N  K  V  I  S  A  S  L  F  P  L  Y  N  Q  M  *  H  F  D  M  K  S  L  *  F  Y  T  H  M  S  F  H  T  C  I  L  C  K  M  C  N  C  S  I  R  S  S  C  M  Y  H  H  L  C  V  T  V  C  *  G  N  S  F  H  I  F  V  T  K  S  L  L  L  F  S  F  S  C  M  I  L   </first_frame>
            <second_frame>  L  F  S  N  P  H  A  P  L  L  A  S  T  R  R  P  E  E  E  D  K  G  K  G  G  C  F  M  I  G  A  V  T  I  S  Y  C  R  *  W  E  E  *  L  L  P  S  L  L  S  S  P  S  S  H  R  L  R  R  L  T  R  L  S  P  T  T  A  S  L  A  Y  L  R  *  L  G  E  M  E  *  T  F  *  N  F  V  L  A  V  E  M  K  S  W  P  F  M  *  S  I  Q  R  H  L  L  L  C  C  I  L  M  V  M  L  L  I  W  V  R  C  L  S  S  L  L  N  *  A  S  V  F  V  L  I  S  W   : G  M  I  T  L  D  M  D  N  Q  L  E  S :   H  L  N  V  I  H  T  R  T  L  M  Q  Y  I  N  A  *  R  S  N  M  R  S  K  M  N  S  *  *  S  M  V  N  L  L  A  V  A  Q  L  L  I  L  H  H  E  Y  P  I  Y  E  V  L  F  Y  I  V  Q  Y  C  L  V  *  E  F  C  T  L  S  S  G  H  I  G  L  T  Y  T  R :   T  L  T  R  L  V  Q  *  I  V  R  F  S  S  F  M :   E  Q  R  M  K  L  L  T  T  P  M  G  N  S  C  G  S  Y  V  T  K  N  M  N  L  C  G  *  M  E  V  D  T  A  I  L  N  F  T  Q  S  I  S  N  I  *  R  N  L  F  L  V  L  A  N  R  S  L  L  L  M  A  P  R  K  H  Q  Q  S  L  K  I  R  V  N  L  P  K  V  V  V  P  P  T  R  L  T  *  N  L  I  F  L  K  F  Q  G  T  V  W  I  V  D  L  K  R  L  R  S  Q  T  N  L  R  S  R  G  *  A  Q  I  V  L  T  G  L  G  E  E  R  A  *  C  G  D  S  *  I  T  E  G  K  H  H  *  L  I  T  *  G  S  *  H  V  S  V  Y  A  N  K  G  *  A  L  T  A  V  P  V  S  V  I  V  G  V  N  G  *  V  I  C  A  I  K  I  *  S  G  A  G  E  I  K  *  L  V  H  P  F  S  P  C  I  I  K  C  N  I  L  T  *  K  A  C  S  F  I  L  I  *  A  S  I  L  V  Y  Y  A  R  C  A  T  V  V  S  E  A  L  A  C  I  I  T  C  V  *  L  F  A  K  E  I  R  S  I  F  L  *  Q  N  L  F  F  F  S  P  L  A  V  *  Y  C  </second_frame>
            <third_frame>   Y  F  Q  T  P  T  R  L  S  W  P  P  R  A  A  L  K  K  K  I  R  E  K  G  A  A  L  *  L  V  Q  *  R  *  V  T  V  D  N  G  R  S  D  F  F  H  R  C  *  V  R  L  L  P  T  D  S  A  V  L  H  G  C  P  R  R  R  Q  V  *  H  T  *  G  S  *  E  R  W  S  R  L  F  E  T  S  Y  S  P  W  K  *  N  R  G  R  S  C  E  A  S  K  G  I  C  Y  Y  A  V  F  S  W  *  C  C  *  F  G  S  D  V  *  A  L  C  *  I  E  P  P  S  S  C  *  S  H  G  :  V  *  L  L  W  I  W  T  I  N  W  K   : A  I  *  M  *  Y  I  R  G  H  *  C  S  I  *  M  L  K  G  A  I  *  G  Q  R  *  T  V  N  N  L  W  S  I  C  W  Q  W  P  N  C  *  S  C  I  T  S  T  Q  F  T  R  C  C  F  T  *  S  N  I  V  W  C  K  S  F  V  P  C  Q  A  D  I  L  V  *  H  I  Q   : E  H  *  Q  D  *  C  S  E  L  S  G  S  R  H  S   : W  N  S  G  *  S  C  *  L  L  P  W  E  T  A  V  G  A  M  *  R  K  I  *  T  F  V  D  K  W  R  W  T  L  Q  S  *  T  L  P  R  V  Y  Q  T  S  K  E  I  C  S  W  S  W  Q  T  E  A  C  C  *  W  P  P  E  S  I  N  R  V  *  K  S  E  *  T  C  R  K  W  *  Y  H  R  H  V  *  P  E  T  *  S  S  *  N  F  K  E  Q  F  G  *  S  T  *  K  D  *  E  V  K  Q  T  *  E  V  A  D  E  H  R  S  C  *  Q  V  *  E  K  K  G  L  S  V  V  I  P  K  L  Q  R  E  N  T  I  N  *  S  P  E  E  V  N  M  C  L  F  M  Q  T  R  D  E  H  *  L  Q  F  L  *  A  *  L  *  V  *  M  V  E  L  S  V  P  S  R  Y  K  V  V  R  E  K  *  S  N  *  C  I  P  F  P  P  V  *  S  N  V  T  F  *  H  E  K  L  V  V  L  Y  S  Y  E  L  P  Y  L  Y  I  M  Q  D  V  Q  L  *  Y  Q  K  L  L  H  V  S  S  P  V  C  N  C  L  L  R  K  F  V  P  Y  F  C  N  K  I  S  S  S  F  L  L  *  L  Y  D  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56588" stop="56886"/>
                    <exon start="57959" stop="57995"/>
                    <exon start="60763" stop="60999"/>
                    <exon start="61086" stop="61133"/>
                    <exon start="61426" stop="61830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGGVTSSIAAKFAFFPPTPPSYTVVPDDGKFSIPEVARRDGVDFLKLRTRRGNEIVAVHVKHPKASATMLYSHGNAADLGQMFELFVELSLRLRVNLMGYDYSGYGQSTGKPSECNTYADIDAVYKCLKEQYEVKDEQLIIYGQSVGSGPTVDLASRVPNLRGVVLHSPILSGVRVLYPVKRTYWFDIYKNIDKISAVNCPVLVIHGTADEVVDYSHGKQLWELCNEKYEPLWINGGGHCNLELYPEYIKHLKKFVLGLGKPKPAANGPQKASTESENQSKPAESGSTTDTFDLKPDLPEISRNSLDSRLEKTKKSNKPEKSRMSTDRVDRFRRRKGLVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61831" stop="62046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNYRGKTPLINHLRKLTCVCLCKQGMSINCSSCERNCRCKWLSYLCHQDIKWCGRNKVISASLFPLYNQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="64306" PGL_stop="64458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64306" e_stop="64458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="64306" e_stop="64458" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64306" stop="64458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG426-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGTAAAGATTCCGACAGCTGCAATAGGTAAAGCATCCCTGTGCATTCCCTCAATCTGCATTTGTACTTGATCTATTAACAATATCTATATGCAGTTGCCGCAGTTTGTATCGCAGTGCTGGCCATAATATCAGTTCCAATCATCTATTGC</gDNA_template>
            <first_frame> F  S  K  D  S  D  S  C  N  R  *  S  I  P  V  H  S  L  N  L  H  L  Y  L  I  Y  *  Q  Y  L  Y  A  V  A  A  V  C  I  A  V  L  A  I  I  S  V  P  I  I  Y  C </first_frame>
            <second_frame>  S  V  K  I  P  T  A  A  I  G  K  A  S  L  C  I  P  S  I  C  I  C  T  *  S  I  N  N  I  Y  M  Q  L  P  Q  F  V  S  Q  C  W  P  *  Y  Q  F  Q  S  S  I   </second_frame>
            <third_frame>   Q  *  R  F  R  Q  L  Q  *  V  K  H  P  C  A  F  P  Q  S  A  F  V  L  D  L  L  T  I  S  I  C  S  C  R  S  L  Y  R  S  A  G  H  N  I  S  S  N  H  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="66040" PGL_stop="65861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66040" e_stop="65861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="66040" e_stop="65861" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66040" stop="65861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG426-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAGGTTGTGCCTGC</gDNA_template>
            <first_frame> H  C  S  K  R  W  F  *  G  S  M  V  F  P  G  G  F  V  V  T  I  V  I  N  D  P  E  C  S  A  P  M  A  L  S  F  I  Y  H  K  A  T  T  I  G  V  S  V  I  N  Q  I  K  V  W  S  G  C  A  C </first_frame>
            <second_frame>  T  A  V  K  D  G  S  E  A  A  W  C  F  Q  E  D  S  L  L  P  L  *  S  T  I  Q  S  V  V  H  L  W  R  Y  P  S  F  T  T  R  L  R  P  *  V  L  V  *  L  I  K  S  K  C  G  Q  V  V  P   </second_frame>
            <third_frame>   L  Q  *  K  M  V  L  R  Q  H  G  V  S  R  R  I  R  C  Y  H  C  D  Q  R  S  R  V  *  C  T  Y  G  V  I  L  H  L  P  Q  G  Y  D  H  R  C  *  C  N  *  S  N  Q  S  V  V  R  L  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="86797" PGL_stop="89247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86797" e_stop="86928"/>
            <exon e_start="88397" e_stop="88457"/>
            <exon e_start="88583" e_stop="88772"/>
            <exon e_start="88967" e_stop="89247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86797" e_stop="86928" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88397" e_stop="88457" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88583" e_stop="88772" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88967" e_stop="89247" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86797" stop="86928"/>
              <exon start="88397" stop="88457"/>
              <exon start="88583" stop="88772"/>
              <exon start="88967" stop="89247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g16160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA : GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG : GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG : GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</gDNA_template>
            <first_frame> V  G  S  G  A  V  S  M  E  E  D  D  G  R  R  E  A  A  I  A  S  V  P  S  L  Q  P  N  F  T  N  K  N  G  V  N  N  A  Q  V  S  K  F  Q  :  E  L  H  R  R  R  L  K  I  K  A  K  S  K  V  K  D  K  T  K   : G  T  V  V  S  T  K  K  Y  N  G  E  D  V  N  A  K  C  K  A  I  M  D  E  K  S  I  E  T  A  K  D  V  R  I  T  L  S  I  S  S  T  T  D  L  S  S  S  Q  E  D  N  T  L  S  K  K  R  Q  K  L  H  W  G :   L  D  T  K  E  R  W  E  R  K  S  N  M  *  R  Y  Q  H  L  N  M  E  C  F  Y  L  A  L  L  L  M  R  R  Y  *  V  S  G  S  G  V  *  S  K  P  T  N  Y  *  *  I  T  L  L  L  V  N  V  F  V  K  *  Y  *  Y  Q  F  T  T  V  K  *  F  N  *  L  L  Y  I  *  I  L  N  D  S  Y  I  F  I  D  D  L  A  </first_frame>
            <second_frame>  S  G  L  E  L  F  Q  W  K  R  T  T  G  G  E  K  L  R  *  H  Q  Y  H  L  Y  N  P  I  S  P  I  K  M  V  S  T  M  L  K  F  P  N  F  K :   S  C  I  E  D  A  *  K  *  K  Q  N  L  R  S  R  I  K  R  K  :  E  L  L  S  P  L  K  S  I  M  V  K  M  S  M  L  N  A  R  Q  S  W  M  K  N  Q  *  K  Q  L  K  M  *  E  L  L  C  Q  *  A  V  Q  Q  T  F  H  P  L  K  K  T  T  H  C  Q  K  S  G  R  S  C  I  G   : G  S  T  P  R  R  D  G  K  G  N  P  I  C  R  D  I  S  I  *  I  W  N  A  S  I  L  P  F  Y  L  *  G  D  T  K  S  R  A  Q  A  C  R  A  N  Q  P  I  T  D  K  *  P  F  Y  L  *  M  Y  L  L  S  S  T  N  I  N  L  L  R  L  S  D  L  I  N  Y  Y  I  Y  E  F  S  M  I  V  I  Y  L  L  M  I  W  R </second_frame>
            <third_frame>   R  V  W  S  C  F  N  G  R  G  R  R  E  E  R  S  C  D  S  I  S  T  I  S  T  T  Q  F  H  Q  *  K  W  C  Q  Q  C  S  S  F  Q  I  S   : R  V  A  S  K  T  L  K  N  K  S  K  I  *  G  Q  G  *  N  E  R :   N  C  C  L  H  *  K  V  *  W  *  R  C  Q  C  *  M  Q  G  N  H  G  *  K  I  N  R  N  S  *  R  C  E  N  Y  F  V  N  K  Q  Y  N  R  P  F  I  L  S  R  R  Q  H  I  V  K  K  A  A  E  V  A  L  G  :  A  R  H  Q  G  E  M  G  K  E  I  Q  Y  V  E  I  S  A  S  E  Y  G  M  L  L  S  C  P  F  T  Y  E  E  I  L  S  L  G  L  R  R  V  E  Q  T  N  Q  L  L  I  N  N  P  F  T  C  K  C  I  C  *  V  V  L  I  S  I  Y  Y  G  *  V  I  *  L  I  I  I  Y  M  N  S  Q  *  *  L  Y  I  Y  *  *  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86797" stop="86928"/>
                    <exon start="88397" stop="88457"/>
                    <exon start="88583" stop="88772"/>
                    <exon start="88967" stop="89009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSGAVSMEEDDGRREAAIASVPSLQPNFTNKNGVNNAQVSKFQELHRRRLKIKAKSKVKDKTKGTVVSTKKYNGEDVNAKCKAIMDEKSIETAKDVRITLSISSTTDLSSSQEDNTLSKKRQKLHWGLDTKERWERKSNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="98846" PGL_stop="92875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98846" e_stop="98702"/>
            <exon e_start="98411" e_stop="98137"/>
            <exon e_start="97130" e_stop="97016"/>
            <exon e_start="95307" e_stop="95240"/>
            <exon e_start="94979" e_stop="94847"/>
            <exon e_start="94763" e_stop="94664"/>
            <exon e_start="94566" e_stop="94454"/>
            <exon e_start="93166" e_stop="93126"/>
            <exon e_start="93010" e_stop="92875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.718" e_score="0.960"/>
          <exon-intron don_prob="0.301" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.582" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="98846" e_stop="98702" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="98411" e_stop="98137" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.718">
            <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97130" e_stop="97016" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95307" e_stop="95240" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94979" e_stop="94847" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.397">
            <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94763" e_stop="94664" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.091">
            <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94566" e_stop="94454" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.582">
            <gDNA_intron_boundary i_start="94453" i_stop="93167" i_length="1287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93166" e_stop="93126" e_length="41"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.906">
            <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="93010" e_stop="92875" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98846" stop="98702"/>
              <exon start="98411" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94454"/>
              <exon start="93166" stop="93126"/>
              <exon start="93010" stop="92875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g16150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACT : GTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG : GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG : GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG : GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG : TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG : ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG : GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG : CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</gDNA_template>
            <first_frame> L  S  S  N  S  S  N  L  P  M  Q  I  L  L  *  F  Y  D  K  A  T  K  K  N  I  H  R  R  G  Y  S  *  Q  L  Y  N  L  S  P  S  T  L  Y  F  A  *  F  H   : C  A  *  H  K  R  L  S  K  C  K  L  Q  L  S  Q  S  K  A  T  Q  H  L  A  F  K  I  E  G  F  C  K  G  L  V  I  C  V  V  G  L  *  L  V  K  V  F  G  *  R  A  V  A  S  E  *  V  W  I  L  L  Q  W  E  S  N  L  A  V  L  G  G  L  F  K  V  S  S  V  R  P  R  R  P  D  H  T  E  F  E  L  L  :  E  R  I  L  R  M  Q  H  L  S  K  F  K  A  N  H  L  D  Q  Y  F  P  M  W  V  *  L  V  W  Q  Q  F  Y  L  D  I  T  *   : G  W  *  M  V  P  L  S  T  *  L  R  I  L  G  L  P  R  T  L  L  Y  K  :  D  G  L  L  A  Q  F  L  L  V  P  L  L  V  H  L  L  V  E  L  W  L  I  N  L  A  E  Q  R  H  L  Y  W  M  Q  F  H  F  Q  L  V  R  F  Y   : V  P  L  P  R  V  F  R  L  *  S  L  D  A  Y  L  L  E  L  A  L  A  S  H  L  L  L  C  H  F  T  Y  L  R :   S  H  P  R  K  F  A  A  H  W  E  R  S  I  S  Y  S  F  A  L  E  F  L  L  H  *  W  L  D  C  L  C  L  E  I  L  H   : G  M  V  F  S  P  E  S  P  R  W  L  Y  Q  :  Q  G  R  I  S  E  A  E  T  S  I  K  R  L  Y  G  K  E  K  V  A  E  V  M  G  D  L  E  A  S  A  Q  G  S  S  E  P  D  A  G  W  L  D  L  F  </first_frame>
            <second_frame>  S  L  R  I  H  R  T  S  Q  C  K  F  C  C  N  F  T  I  K  Q  Q  R  R  T  F  I  E  E  D  T  V  S  N  S  I  I  S  H  L  Q  H  S  T  L  H  N  F  T  :  V  L  S  I  K  G  F  Q  N  A  S  F  N  F  H  S  Q  R  Q  H  S  I  W  P  S  K  S  K  D  F  A  R  G  *  *  F  A  *  *  D  F  S  W  *  K  S  S  D  D  G  Q  L  L  R  S  K  Y  G  F  C  F  N  G  N  R  T  W  P  C  *  E  D  C  S  K  C  L  R  F  V  R  E  G  Q  I  T  Q  S  S  S  C  W :   R  G  Y  *  G  C  S  T  S  Q  S  S  R  P  I  I  W  I  S  T  S  L  C  G  C  S  L  S  G  S  N  F  I  W  I  S  P  R  :  G  G  E  W  C  P  *  V  P  S  *  G  S  W  D  C  R  E  H  C  Y  T  R :   M  D  C  *  H  S  S  C  W  C  L  C  W  F  I  Y  W  W  S  S  G  *  *  I  W  P  N  K  D  I  Y  I  G  C  N  S  T  F  S  W  C  V  S  M  :  Y  H  C  P  E  C  S  G  Y  D  H  W  T  L  T  Y  W  N  W  H  W  H  L  I  C  Y  C  A  T  L  H  I  *   : D  L  T  H  G  N  S  R  H  T  G  N  G  Q  S  A  I  H  L  H  W  N  S  C  C  T  S  G  W  I  A  F  V  W  K  S  F  M  :  E  W  Y  F  L  P  K  V  L  G  G  S  I  S :   K  G  E  Y  L  K  L  R  H  L  L  K  G  Y  M  V  K  K  K  L  L  R  L  W  V  I  W  K  L  L  P  R  V  L  Q  N  Q  M  L  G  G  L  I  Y  L </second_frame>
            <third_frame>   L  F  E  F  I  E  P  P  N  A  N  S  A  V  I  L  R  *  S  N  K  E  E  H  S  S  K  R  I  Q  L  A  T  L  *  S  L  T  F  N  T  L  L  C  I  I  S  L :   C  L  A  *  K  A  F  K  M  Q  A  S  T  F  T  V  K  G  N  T  A  F  G  L  Q  N  R  R  I  L  Q  G  V  S  D  L  R  S  R  T  L  A  G  K  S  L  R  M  T  G  S  C  F  G  V  S  M  D  S  A  S  M  G  I  E  L  G  R  A  R  R  T  V  Q  S  V  F  G  S  S  A  K  A  R  S  H  R  V  R  A  A   : G  E  D  I  E  D  A  A  P  L  K  V  Q  G  Q  S  S  G  S  V  L  P  Y  V  G  V  A  C  L  A  A  I  L  F  G  Y  H  L  G :   V  V  N  G  A  L  E  Y  L  A  K  D  L  G  I  A  E  N  T  V  I  Q   : G  W  I  V  S  T  V  L  A  G  A  F  V  G  S  F  T  G  G  A  L  A  D  K  F  G  R  T  K  T  F  I  L  D  A  I  P  L  S  V  G  A  F  L  C :   T  T  A  Q  S  V  Q  A  M  I  I  G  R  L  L  T  G  I  G  I  G  I  S  S  A  I  V  P  L  Y  I  S  E  :  I  S  P  T  E  I  R  G  T  L  G  T  V  N  Q  L  F  I  C  I  G  I  L  V  A  L  V  A  G  L  P  L  S  G  N  P  S  W :   N  G  I  F  S  R  K  S  S  V  A  L  S   : A  R  E  N  I  *  S  *  D  I  Y  *  K  A  I  W  *  R  K  S  C  *  G  Y  G  *  F  G  S  F  C  P  G  F  F  R  T  R  C  W  V  A  *  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98398" stop="98137"/>
                    <exon start="97130" stop="97016"/>
                    <exon start="95307" stop="95240"/>
                    <exon start="94979" stop="94847"/>
                    <exon start="94763" stop="94664"/>
                    <exon start="94566" stop="94454"/>
                    <exon start="93166" stop="93126"/>
                    <exon start="93010" stop="92994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFKMQASTFTVKGNTAFGLQNRRILQGVSDLRSRTLAGKSLRMTGSCFGVSMDSASMGIELGRARRTVQSVFGSSAKARSHRVRAAGEDIEDAAPLKVQGQSSGSVLPYVGVACLAAILFGYHLGVVNGALEYLAKDLGIAENTVIQGWIVSTVLAGAFVGSFTGGALADKFGRTKTFILDAIPLSVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGTLGTVNQLFICIGILVALVAGLPLSGNPSWNGIFSRKSSVALSARENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 13456 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2242 bytes was the average size of a spliced alignment
$ 12048 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2008 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 13 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:18:12
-->
