<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:17:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314771" ref_strand="+" ref_description="SGN-E314771 [cTOA-20-O24]">
      <seq>ttttagaaagtattataagtgttcgcatttctttcaccccttcactaaatcccctagcctaattttgtcagtgtatgtgcacataaatatgtatttactcacacatttttctactaatttgtatgtggtgcaaattttgtttgttttgttgtggtgcattcagagtttagactatgcaaatgcagcaattccaacagtgaaagttgggaatatatcaaaagtgggagattctgcatattttaggatatactatggacaaaccttcaaagttattaagaacacccttgatggaaagagttatcttcttatccagaacaacacaagaatggccagtagaacaaaatattgcacctcaagaataaagtcttttgttatcccactagcaaactactcgatcgagactgactacttttttccaggtacaccatttttaaccatcctccttgttttttttcccactttataacatcatattataagctttatatgtctttttggtacgcgttgataactcatgcactgactgtttctctctttttcttctctttctttccttcaattcacagtttcctttttcgaggtaagaatgcacagttttagtattattctgatagctgtattactagattgaaaatttttgcgtggaatattgcagcttctangcctattgggaaacttgaaangcataacatcaacatacgtggcctcccaatgtgtactgaaactatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="26552" stop="29172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26852" g_stop="27164" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27165" i_stop="28455" i_length="1291">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28456" g_stop="28872" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="730" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E314771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26852" e_stop="27164"/>
          <exon e_start="28456" e_stop="28872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAGGTAACTACATTTATTTCGAACAGATTATGTAATTGTTATTGTATAGTTCATTGCTAGAACAGACTCTGGCAAGAAGTAGGATTTAAGTGATATACACCGACAATGTCCGCGTATATTTAAGTTATAATAGTAGGTTATTGTTACCAATTCTAATTGGGTGAATACTTTTCACACCTTTAGTCTTGTTTGAATTTAGTTAGAACTGTAAAAAAAAAAGATGAAGATATTTCCAGGCTAGAATTTACTTGAAAAGAAGATGATAAGGGTTACTGGACCACAAAAGTTGGACATTGGAAGTAGTAGGGTCAAGAATATTTTTTTAAAATGAAAAAGAGTTATACTTCTTTTCATTTGGTCCTCTGTAGTTGGCAATCCAACAACTCACAAAGTACTTCTTGGTTGCTGAATTCCATGGCACAAGTTGCTTTGTTTTGAACTTTCTGTTGGTGTTGTTTTCTTGGCTAAATGATCAATCTGCAGAAAAAAAAGTAAAAGTGTCACTACCTACAGCTACATTATTCTTATTGATCAATACAGTCATGAATTAGCTCGTTTTCGTCTTCTATTGTTCCCTTTTTAGGAGAAGCCAGGGGATTTTACAGCCATGTATAAGAGCATACCTTTGACAGAACCAGAACTTATAGAGATTGAAGATTCTTTGTTTTAAAATTCTTTCAACTAGATCTATATATTTATCCGCAATCAGGGAGAGAGGGGGTTCATTGCTGGAATATGCATATATAGTAATTTTGAACACCCTTGGTGTCCGCGTTGATATTGGAATTCAGAACTGGTCATATACTCTAACAAAATGCTTTTGTGTGAATTCCAGCTAGTTGCAAGTTCTTAGTTCTTTTGTAATCTAAGAATACGTGATACAACCTTGGGAGAACAACATCTTTAAAGCTAGCTATTAAGGTGGGAGAGCCCAAGGCTATATAGCCACACGCCCACACCTTTAAAGCTAGCTATTAAGGTGGGAGAGTCCAGGGCTATACAGCCACACGCTGCACACTTTTAAAGCTAGTTATTAAGGTGGGAGAGTCCAAGGCTATACAGCCACACGCTGCACACCTTTAAAGCTAGCTATTAAGGTGGGGGATCCCAAGGCTACATAGCCACATGCCCACACCTTTAAAGCTAGCTATTATGGTGGGGGAGCCCAAGGCTATATGAGCCCCGCATCAGCTCTTCATTTAACCAAAGTCCCATACCTAGCAATAGGATCATAACAATATGATTCTAGGAAACCAATTCTCTCCTGATTTACTAGAATGTAAATTTTATGCAGAACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTAGGCCTATTGGGAAACTTGAAAGGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATAC</genome_strand>
        <mrna_strand>TTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTANGCCTATTGGGAAACTTGAAANGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314689" ref_strand="+" ref_description="SGN-E314689 [cTOA-20-P24]">
      <seq>ttttagaaagtattataagtgttcgcatttctttcaccccttcactaaatcccctagcctaattttgtcagtgtatgtgcacataaatatgtatttactcacacatttttctactaatttgtatgtggtgcaaattttgtttgttttgttgtggtgcattcagagtttagactatgcaaatgcagcaattccaacagtgaaagttgggaatatatcaaaagtgggagattctgcatattttaggatatactatggacaaaccttcaaagttattaagaacacccttgatggaaagagttatcttcttatccagaacaacacaagaatggccagtagaacaaaatattgcacctcaagaataaagtcttttgttatcccactagcaaactactcgatcgagactgactacttttttccaggtacaccatttttaaccatcctccttgttttttttcccactttataacatcatattataagctttatatgtctttttggtacgcgttgataactcatgcactgacaggttctctctttttcctctctttctttccctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="26552" stop="29001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26852" g_stop="27164" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27165" i_stop="28455" i_length="1291">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28456" g_stop="28701" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="559" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E314689" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26852" e_stop="27164"/>
          <exon e_start="28456" e_stop="28701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAGGTAACTACATTTATTTCGAACAGATTATGTAATTGTTATTGTATAGTTCATTGCTAGAACAGACTCTGGCAAGAAGTAGGATTTAAGTGATATACACCGACAATGTCCGCGTATATTTAAGTTATAATAGTAGGTTATTGTTACCAATTCTAATTGGGTGAATACTTTTCACACCTTTAGTCTTGTTTGAATTTAGTTAGAACTGTAAAAAAAAAAGATGAAGATATTTCCAGGCTAGAATTTACTTGAAAAGAAGATGATAAGGGTTACTGGACCACAAAAGTTGGACATTGGAAGTAGTAGGGTCAAGAATATTTTTTTAAAATGAAAAAGAGTTATACTTCTTTTCATTTGGTCCTCTGTAGTTGGCAATCCAACAACTCACAAAGTACTTCTTGGTTGCTGAATTCCATGGCACAAGTTGCTTTGTTTTGAACTTTCTGTTGGTGTTGTTTTCTTGGCTAAATGATCAATCTGCAGAAAAAAAAGTAAAAGTGTCACTACCTACAGCTACATTATTCTTATTGATCAATACAGTCATGAATTAGCTCGTTTTCGTCTTCTATTGTTCCCTTTTTAGGAGAAGCCAGGGGATTTTACAGCCATGTATAAGAGCATACCTTTGACAGAACCAGAACTTATAGAGATTGAAGATTCTTTGTTTTAAAATTCTTTCAACTAGATCTATATATTTATCCGCAATCAGGGAGAGAGGGGGTTCATTGCTGGAATATGCATATATAGTAATTTTGAACACCCTTGGTGTCCGCGTTGATATTGGAATTCAGAACTGGTCATATACTCTAACAAAATGCTTTTGTGTGAATTCCAGCTAGTTGCAAGTTCTTAGTTCTTTTGTAATCTAAGAATACGTGATACAACCTTGGGAGAACAACATCTTTAAAGCTAGCTATTAAGGTGGGAGAGCCCAAGGCTATATAGCCACACGCCCACACCTTTAAAGCTAGCTATTAAGGTGGGAGAGTCCAGGGCTATACAGCCACACGCTGCACACTTTTAAAGCTAGTTATTAAGGTGGGAGAGTCCAAGGCTATACAGCCACACGCTGCACACCTTTAAAGCTAGCTATTAAGGTGGGGGATCCCAAGGCTACATAGCCACATGCCCACACCTTTAAAGCTAGCTATTATGGTGGGGGAGCCCAAGGCTATATGAGCCCCGCATCAGCTCTTCATTTAACCAAAGTCCCATACCTAGCAATAGGATCATAACAATATGATTCTAGGAAACCAATTCTCTCCTGATTTACTAGAATGTAAATTTTATGCAGAACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAA</genome_strand>
        <mrna_strand>TTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACAGGTTCTCTCTTTTTCCTCTCTTTCTTTCCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="32428" stop="33180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32728" g_stop="32880" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32728" e_stop="32880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACGAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702437" ref_strand="+" ref_description="SGN-E702437 [FA18CH04]">
      <seq>gcgattttttcccttttacaagaaccctatctgcatcagccggacgatatgagtcggtcagtggacgagctcggaactaccaaaccggatccgacgaagaagcccgtcttcctcaccaaagcacagcgagagcagctagccctacagcgccgccacgatgaaatcgccgaacagaaacggcgggccgaacagcttctccaacaacagggtaacaaccgcccttcctccaccgataacgaccatgaacgagatcatcgtgacagagatagtaggggtgaccaccatcgctccagggaccgggacagggacagagacagagacagagatagggaaagagaaagggagtcgagggaccgggaggtggagcgccggaagcgcgagagggagcgtgacgaagaggtgaaggaacgagagcgagctcgactggacaaattagctgagcgagagcgagagaaagagcttgatgcaatcaaagagcagtaccttggctccaaaaaacctaagaagcgggtgattaaacctagtgagaaattccgattttcgtttgattgggagaacaccgaggacacatctcgcgacatgaacgctctataccaaaaccctcacgaagcccgcttactctttggtcgcggattccgtgctggaatggaccggagggagcagaagaagcttgctgcccagaatgagagagagctgcgggaggagatctggaaaaaggatggcgttgaggagtctgccgtanaagcagctgccctgaagaagaaggaacaggatgccgacatgtatgacacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="33542" stop="34938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33842" g_stop="34638" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E702437" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33842" e_stop="34638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTAGAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGA</genome_strand>
        <mrna_strand>GCGATTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCCAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTANAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301311" ref_strand="+" ref_description="SGN-E301311 [cLEW-24-A11]">
      <seq>ttttacaagaaccctatctgcgtgagccggactatatgagtcggtcagtggacgagctcggaactaccaaaccggatccgacgaagaagcccgtcttcctcaccaaagcacagcgagagcagctagccctacagcgccgccacgatgaaatcgccgaacagaaacggcgggccgaacagcttctccaacaacagggtaacaaccgcccttcctccaccgataacgaccatgaacgagatcatcgtgacagagatagtaggggtgaccaccatcgctccagggaccgggacagggacagagacagagacagagatagggaaagagaaagggagtcgagggaccgggaggtggagcgccggaagcgcgagagggagcgtgacgaaaaggtgaaggaacgagagcgagctcgactggacaaattagctgagcgagagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="33555" stop="34592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33855" g_stop="34292" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E301311" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33855" e_stop="34292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAG</genome_strand>
        <mrna_strand>TTTTACAAGAACCCTATCTGCGTGAGCCGGACTATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAAAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343233" ref_strand="+" ref_description="SGN-E343233 [cTOF-17-P18]">
      <seq>tcaacaaattgaggatgagactgtcaagttcgcacactatttgggtatcaaagttgtttctattgttggtgggcagtccatagaggagcaaggttttaggattaggcaaggttgtgaagttgtgattgcaacccctgggcgacttcttgattgcttggagagacgttattgtgttctgaaccagtgtaattatgttgttcttgatgaagcggaccgtatgattgacatgggttttgagcctcaagttgttggtgtactggatgctatgccttcaagtaatatgaaaccggagaatgaggatgaagagcttgatgagaagagaatttatcgaaccacttatatgttcagtgctaccatgccacctgctgtggagcggctggctagaaaatacttgagaaatcctgttgttgtgactattggcactgctggaaagactactgacctcatcactcagcacgtgtttatggtaaaggaatcagagaaaatgtataaactgcagaaattgctggatgagcttggagataagacagctattgtgttcatcaacactaagaagcaggctgattttgttgccaagaatctggataaaaacggctacagggtaaccacactgcatggtggaaagtctcaggagcaaagagaaatcagccttgaaggatttaggaccaagaagtacaatgtgttagttgctactgacgttgctggtcgtggtattgatatacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="34729" stop="36056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35029" g_stop="35756" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E343233" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35029" e_stop="35756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAGGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTGATATACCTGATG</genome_strand>
        <mrna_strand>TCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAAGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTGATATACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732215" ref_strand="+" ref_description="SGN-E732215 [LB01CC12]">
      <seq>cttttattggacgtacaggtcgtgcaggaaagacgggtgtagccacaacattcttgaccatgcaggatactgaagtcttttatgatcttaaacaaatgctcacacaaagcaacagtcctgttcccccagaacttgcccggcacgaggcttcgaagttcaagccaggaagtattcccgacagaccacctaggaggaatgatactgtatttgttcattaaagttggaattgctacatatgctattgtaggggtcaagtgttgggagtttctataatggtatctgctgaaaaaaatgagctaggtgggtgattgatggagttggtagatagataggagggttcaaacataatggaagtgaagtggtaacaatgtttggtaatgagtttttttctgttactaacaagtaatgtgctgtcagctttgctgaagggatttgcttttttattctgattccgtttgtcgatgcctaggctttactgaagagcttcctgtaaactcttaaacatttcttgtgttccctttctttattacttaatcttaagatagtctcaggaacttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="35512" stop="56125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35808" g_stop="36365" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36366" i_stop="37436" i_length="1071">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37437" g_stop="37467" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="589" r_length="31" r_score="0.548"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E732215" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35808" e_stop="36365"/>
          <exon e_start="37437" e_stop="37467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTAAATTTATCGCCAAAGTATGAAGTTTATCGCCAATTAGTTAGCAAGTTCTTTGGACAACAGGTACATGTGAGTATGGAATTTGGTAAACCAGTCCATATTCTAGTAGATATAACCTACTTCCTTTATGATTGTTTTACGTTATTATGTTATGTTGTGTGGTTCTCATTTGCTTCAACTCTATCTAGCCTCACTTAACTGCACTTAATATTCTTCATTTGTGTAATCCAAAGTTTTTACCGAAATGCACTCTCAGTAATCTGTCAATCAAGTCATGCACCACCATTTCAACCTCCTTTCTTAAAAGTTTTGGGGTAGACACCGAAGTCTGTAAGCTGGTGTTATTTCTGTTTAAGAATTTGATTGTCATTGTTTTTTTAATTTACAATTTGAGAAAAATTGATTGAAATCTGAAACATCTTCTATAATTTCTGTCATTGCTTTTAGTTGGGTTTTACACTTTTTGAATAAGAGGGATTTACTTGCTGAGAATGTCCATGCTCGTGCAAGTAAACACTACTGGACTTCCAATATTCAAAAAGATAGATTTGAGCAATCAATCTGGAATTTGGAAGCAAGAAAGACACAGCCACTGCTGGTTTTCACTTATTCTGTCTTGAAATTGAATTACAAATCACACTTAAAAAAGAAAATTACACTCTTTATTTGCGTGTTATGGTTGACAATGAGGGAACAAGTATCATGACTGGCTGTTCGATGATCCAAACAACCTGCAGTATGACACTTCAAATCGTTAGTAACCTCCTCAAAAGGGGAGGGAGGATAAAAGAAATAGACACATCCGTGATCCATGCAGTAGCAATTGTATTAAATCTTACTTCTGCAACCTTGATTGTGAGCGCCTGGTACCATAGAAAAAATTGCATACATCAGTACCGTTGCTGTGTGGTTCTAATTTACTACTAGAATATTCTAGGACCCTTGAAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAA</genome_strand>
        <mrna_strand>CTTTTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251008" ref_strand="+" ref_description="SGN-E251008 [cLEG-17-O7]">
      <seq>aaaaattgtgggcaaaagttctagagcgtacctctgtgataactgtggcttaactttcaccctctcgggtctctcctttggcccttctgttttttcatcaattttgatcggcacatcttttatctgcagcaagtgtaatttaggaagcaaaataagaaaagtatatctcacaaggatgtttggagtagaatgtaatgcaggcatgcagaaatataccaagtttctgaactcgagattgtagaaagtatcgatgtatctttgctttgcttgtttctgatctttgtacaatgtcctccaaaaagtgtagattgaccccatattcaataccttgtttgcatagatcttccatgtgtaactgcaaaatataaggattaagaaaatttcaaccagatatatgcctctctgcaatttgaacaattgtttatttgtgagttaccattcatatatacgctttagaccctgggctgaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="37008" stop="38081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37308" g_stop="37781" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E251008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37308" e_stop="37781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCT</genome_strand>
        <mrna_strand>AAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691989" ref_strand="+" ref_description="SGN-E691989 [LH_Ea07I19]">
      <seq>atacaaacttgggttgcgggcactactgaaacctgagtggttcgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgccccaaccaagccacttccttttgtagttgaagaggctgagtccgtgtctgctgccccggcttgatagtgactagctctcttcatgttttatagatctaggttccattgcaagggagcagtttttggcttcatgtagcttccctaaagcctttatacttggttttgagtgttccccaattgccatagatattcagaaataaaatctcacttgctgaattttttgagtgaccttaagttaactcaaggatgtattttcataggtatttctggattcccaacaataaccttcgcttctttagattgaaacagagtgtcttaatatttcattccaaaagcaggcatatgaagatgaaacttctctctagagatggtatctcttttcttttacattccagtgtctgccttttctattgataaagctttgatgctctgaagatgacaatttgtacaatttagagcaaagtggactaattaattaatgagaagattgatttcatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="45123" stop="43896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44825" g_stop="44188" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E691989" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44825" e_stop="44188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTCACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCACTCCAAAAGCAGGCATATGAAGATGAAACATCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGCCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGACTAATTAATTAATGAGAAGATTGATTTCATCTAATGTATGAT</genome_strand>
        <mrna_strand>ATACAAACTTGGGTTGCGGGCACTACTGAAACCTGAGTGGTTCGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTCTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTAACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCATTCCAAAAGCAGGCATATGAAGATGAAACTTCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGTCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGACTAATTAATTAATGAGAAGATTGATTTCATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695829" ref_strand="+" ref_description="SGN-E695829 [LH_Ea07I19](-)">
      <seq>aacaaacttgggttgcgggcactactgaaacctgagtggttcgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgccccaaccaagccacttccttttgtagttgaagaggctgagtccgtgtctgctgccccggcttgatagtgactagctctcttcatgttttatagatctaggttccattgcaagggagcagtttttggcttcatgtagcttccctaaagcctttatacttggttttgagtgttccccaattgccatagatattcagaaataaaatctcacttgctgaattttttgagtgaccttaagttaactcaaggatgtattttcataggtatttctggattcccaacaataaccttcgcttctttagattgaaacagagtgtcttaatatttcattccaaaagcaggcatatgaagatgaaacttctctctagagatggtatctcttttcttttacattccagtgtctgccttttctattgataaagctttgatgctctgaagatgacaatttgtacaatttagagcaaagaagaggtaattaattaatgagaagatgatttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="45124" stop="43896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44824" g_stop="44188" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E695829" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44824" e_stop="44188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTCACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCACTCCAAAAGCAGGCATATGAAGATGAAACATCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGCCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGA-CTAATTAATTAATGAGAAGATTGATTTCATCTAATGTATGAT</genome_strand>
        <mrna_strand>AACAAACTTGGGTTGCGGGCACTACTGAAACCTGAGTGGTTCGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTCTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTAACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCATTCCAAAAGCAGGCATATGAAGATGAAACTTCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGTCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGAAGAGGTAATTAATTAATGAGAAGA-TGATTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745191" ref_strand="+" ref_description="SGN-E745191 [GI|47105855]">
      <seq>gatagcagtaaggtgattacattgctcaactataaaccctagaagaaatgttgagaagaagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaacttattcaatggcccatccatctagaggtttcaagggtgaccgctagagctaaagcagctgtggaagcagcgggtgggtctgtaaggagagtgcattacaacaaacttgggttgcgggcactactgaagcctgagtggtttgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgccccaaccaagccacttccttttgtagttgaagaggctgagtccgtgtctgctgccccggcttgatagtgactagctttcttcatgttttatagatctaggttccattgcaagggagcagtttttggcttcatgtagcttccctaaagcctttatacttggttttgagtgttccccaattgccatagatattcagaaataaaatctcacttgctgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48224" stop="44181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47925" g_stop="47468" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="542" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45614" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="632" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44896" g_stop="44482" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="1047" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1048" polyA_stop="1066"/>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E745191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1047</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47925" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45614"/>
          <exon e_start="44896" e_stop="44482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAGGTAATATTCAGTCAAGACTAATTAATATAGCTTTTTTATTCAATTTTGTATTCATTGTTAAAAAACAATACTCCCTCTATTCCATATTGACTGAATTTCTGACGCAATGATCACTTATTAAGAAAAATATTCATGGAAATATTTTAAACTATACTTTCCACTATTGTCCTTTGTGAAATTATAAAGATAACTTTGCTGGTAGTGAAAGTTATCTCCTAGAAATATCAAACATCATTAAAGGAATGAGCAAAAAATTTCAAACATCCATCCATCTTGAACTTTGAACAATTCAATTATTTTGAACAATGATAAAAGACCCAAAAATTCAACTAATGTGGAATAGGACGAGTAATATTAAATTTGGTATTGCACTTCATATAAAGGTCATTTGGTAGAAATAACATAAGTTGCATTTTGCATTTGAGTTGCTAAGTGGTTCTTGACATGTACTGCTATTTATATTAAATGTGTTGCAATGTATAAGTATTTGTAAAAGCTCACGTCAGTTCAGCACTATTAGAAATGTGCTTTGCACAAATATTGATGGTGGAGAGGGGATATTTTCATGTTCCTTAAACATAGATGTTTGGCATGATCCTTTTTTCTCTTTGTTTATGGTGTCGATTTATTGAGAATATGCATTACATTTACTTGTTAAAATGGCAAATGATGTCTGTCCTCTCAGCGTACTCATCCAACATCAACTGTTGATGACAGGTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGA</genome_strand>
        <mrna_strand>GATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708734" ref_strand="+" ref_description="SGN-E708734 [FA36CE06]">
      <seq>cattagaaatgttgagaagaagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaacttattcaatggcccatccatctagaggtttcaagggtgaccgctagagctaaagcagctgtggaagcagcgggtgggtctgtaaggagagtgcattacaacaaacttgggttgcgggcactactgaagcctgagtggtttgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgccccaaccaagccacttccttttgtagttgaagaggctgagtccgtgtctgctgcccccggctgatagtgactagctttcttcatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48182" stop="44308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47886" g_stop="47468" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="503" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45614" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="593" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44896" g_stop="44608" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="882" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E708734" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47886" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45614"/>
          <exon e_start="44896" e_stop="44608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAGGTAATATTCAGTCAAGACTAATTAATATAGCTTTTTTATTCAATTTTGTATTCATTGTTAAAAAACAATACTCCCTCTATTCCATATTGACTGAATTTCTGACGCAATGATCACTTATTAAGAAAAATATTCATGGAAATATTTTAAACTATACTTTCCACTATTGTCCTTTGTGAAATTATAAAGATAACTTTGCTGGTAGTGAAAGTTATCTCCTAGAAATATCAAACATCATTAAAGGAATGAGCAAAAAATTTCAAACATCCATCCATCTTGAACTTTGAACAATTCAATTATTTTGAACAATGATAAAAGACCCAAAAATTCAACTAATGTGGAATAGGACGAGTAATATTAAATTTGGTATTGCACTTCATATAAAGGTCATTTGGTAGAAATAACATAAGTTGCATTTTGCATTTGAGTTGCTAAGTGGTTCTTGACATGTACTGCTATTTATATTAAATGTGTTGCAATGTATAAGTATTTGTAAAAGCTCACGTCAGTTCAGCACTATTAGAAATGTGCTTTGCACAAATATTGATGGTGGAGAGGGGATATTTTCATGTTCCTTAAACATAGATGTTTGGCATGATCCTTTTTTCTCTTTGTTTATGGTGTCGATTTATTGAGAATATGCATTACATTTACTTGTTAAAATGGCAAATGATGTCTGTCCTCTCAGCGTACTCATCCAACATCAACTGTTGATGACAGGTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTT</genome_strand>
        <mrna_strand>CATTAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCCGGCTGATAGTGACTAGCTTTCTTCATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705480" ref_strand="+" ref_description="SGN-E705480 [FA27BB02]">
      <seq>cggtagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcgtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaacttattcaatggcccatccatctagaggtttcaagggtgaccgctagagctaaagcagctgtggaagcagcgggtgggtctgtaaggagagtgcattacaacaaacttgggttgcgggcactactgaagcctgagtggtttgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgcccccaccaagccactttcctttgtagttgaagaggctgagtccgtgtctgctgccccggcttgatagtgactagctttcttcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48168" stop="44309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47870" g_stop="47468" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="486" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45614" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44896" g_stop="44609" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="864" r_length="288" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E705480" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47870" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45614"/>
          <exon e_start="44896" e_stop="44609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAGGTAATATTCAGTCAAGACTAATTAATATAGCTTTTTTATTCAATTTTGTATTCATTGTTAAAAAACAATACTCCCTCTATTCCATATTGACTGAATTTCTGACGCAATGATCACTTATTAAGAAAAATATTCATGGAAATATTTTAAACTATACTTTCCACTATTGTCCTTTGTGAAATTATAAAGATAACTTTGCTGGTAGTGAAAGTTATCTCCTAGAAATATCAAACATCATTAAAGGAATGAGCAAAAAATTTCAAACATCCATCCATCTTGAACTTTGAACAATTCAATTATTTTGAACAATGATAAAAGACCCAAAAATTCAACTAATGTGGAATAGGACGAGTAATATTAAATTTGGTATTGCACTTCATATAAAGGTCATTTGGTAGAAATAACATAAGTTGCATTTTGCATTTGAGTTGCTAAGTGGTTCTTGACATGTACTGCTATTTATATTAAATGTGTTGCAATGTATAAGTATTTGTAAAAGCTCACGTCAGTTCAGCACTATTAGAAATGTGCTTTGCACAAATATTGATGGTGGAGAGGGGATATTTTCATGTTCCTTAAACATAGATGTTTGGCATGATCCTTTTTTCTCTTTGTTTATGGTGTCGATTTATTGAGAATATGCATTACATTTACTTGTTAAAATGGCAAATGATGTCTGTCCTCTCAGCGTACTCATCCAACATCAACTGTTGATGACAGGTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTT</genome_strand>
        <mrna_strand>CGGTAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTC-GTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCCACCAAGCCACTTTCCTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314456" ref_strand="+" ref_description="SGN-E314456 [cTOB-1-E7]">
      <seq>ttacattgctcaactataaaccctagaagaaatgttgagaagaagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaacttattcaatggcccatccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48209" stop="45318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47909" g_stop="47468" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="526" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45618" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="612" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E314456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47909" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCT</genome_strand>
        <mrna_strand>TTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337922" ref_strand="+" ref_description="SGN-E337922 [cTOE-14-H12]">
      <seq>aatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaagattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48130" stop="45340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47830" g_stop="47468" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="447" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45640" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="511" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E337922" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47830" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAAC</genome_strand>
        <mrna_strand>AATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAA.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311584" ref_strand="+" ref_description="SGN-E311584 [cTOA-6-M17]">
      <seq>aaatgttgagaagaagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcanccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48180" stop="45527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47880" g_stop="47468" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="497" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45699" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="502" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E311584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47880" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTC</genome_strand>
        <mrna_strand>AAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAN...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396194" ref_strand="+" ref_description="SGN-E396194 [TUS-24-L18](-)">
      <seq>ataatgagtcactatacattcatccagatgggaagccatcctttgcactactatcaacattgcgattctgggcagtccctaaaaccagtcgcaaatctgttgtacaccttgtttattcagggaacagactttcaacagagagtgaagttgttgcaatgagatggctaattatgaaatgcagaaccacattggaagttcttcaaacaactgctccagaagattgtaggttgctcaacatcctatataagtttcaagacattcataaattccccgaggtcaaagagataccaccaccccttgctagtgagctttgtgcttttattgaaaaaaacaagaatgtggccagtgaaggaatttgctccttgtcaagtgtagctagaaggtccactgagagatggaaattagctattctgtggaggtatctctacaagcaaatactttgcagttgcattatacattgtagtgctgtaatttattatttaggggtcgatcggtaggaagcattaggagaagtaattcatatattatttagtactatatttgaaaggaattttggacccaagtaaaattaattcatggattagttatacatccttcatggtttcgtaggatgcattactaatacatatgatttaataccatggaatttatctatgtaagattttcttgattttatattttatatttatacaaataatattaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="49794" stop="48484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49494" g_stop="48780" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E396194" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49494" e_stop="48780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATACATATGATTTAATACCATGGAATTTATCTATGTAAGATTTTCTTGATTTTATATTTTATATTTATACAAATAATATTAAATAAATAAGCTT</genome_strand>
        <mrna_strand>ATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATACATATGATTTAATACCATGGAATTTATCTATGTAAGATTTTCTTGATTTTATATTTTATATTTATACAAATAATATTAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691797" ref_strand="+" ref_description="SGN-E691797 [LH_Ea07A19]">
      <seq>taagaaattcttaaatagatgaattccatggtattaaatcatatgtattactaataccatctaattgaaggtattagcaatgcattctacaataccatgaaggatgtataactaatccatgaattaattttacttaggtccaaaattcctctcaaacatagtactaaataatatatgaattacttctcctaatacttcctaccgatcgacccctaaataataaattacagcactacaatgtatgatgcaactgcaaagtatttgcttgtagagatacctccacagaatagctaatttccatctctcagtggaccttctagctacacttgacatggagcaaattccttcactgaccacattcttgtttttttcaataaaagcacaaagctcactagcaaggggtggtggtatctctttgacctcggggaatttatgaatgtcttgaaacttaaataggatgttgagcaacctacaatcttctggagcagttgtttgaagaacttccaatgtggttctgcatttcgtaattagccatctcattgcaacaacttcactctctgttgaaagtctgttccctgaataaacaaggtgtacaacagatttgcgactggttttagggactgcccagaatcttaatgttgatagtagtgcaaaggatggcttcccatctggatgaatgtatagtgactcattatcccatgagcagagagaatacatatctggttctaaaggtataaaggccttgtcatttgggttctcagtcagaagaaatccgtagtgttgtagaagctccagattggtgtaggttccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48527" stop="49911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48870" g_stop="49611" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="812" r_length="742" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E691797" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48870" e_stop="49611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAGTAATGCATCCTACGAAACCATGAAGGATGTATAACTAATCCATGAATTAATTTTACTTGGGTCCAAAATTCCTTTCAAATATAGTACTAAATAATATATGAATTACTTCTCCTAATGCTTCCTACCGATCGACCCCTAAATAATAAATTACAGCACTACAATGTATAATGCAACTGCAAAGTATTTGCTTGTAGAGATACCTCCACAGAATAGCTAATTTCCATCTCTCAGTGGACCTTCTAGCTACACTTGACAAGGAGCAAATTCCTTCACTGGCCACATTCTTGTTTTTTTCAATAAAAGCACAAAGCTCACTAGCAAGGGGTGGTGGTATCTCTTTGACCTCGGGGAATTTATGAATGTCTTGAAACTTATATAGGATGTTGAGCAACCTACAATCTTCTGGAGCAGTTGTTTGAAGAACTTCCAATGTGGTTCTGCATTTCATAATTAGCCATCTCATTGCAACAACTTCACTCTCTGTTGAAAGTCTGTTCCCTGAATAAACAAGGTGTACAACAGATTTGCGACTGGTTTTAGGGACTGCCCAGAATCGCAATGTTGATAGTAGTGCAAAGGATGGCTTCCCATCTGGATGAATGTATAGTGACTCATTATCCCATGAGCAGAGAGAATACATATCTGGTTCTAAAGGTATAAAGGCCTTGTCATTTGGGTTCTCAGTCAGAAGAAATCCATAGTGTTGTAGAAGCTCCAGATTGGTGTAGGTTCCGT</genome_strand>
        <mrna_strand>GTATTAGCAATGCATTCTACAATACCATGAAGGATGTATAACTAATCCATGAATTAATTTTACTTAGGTCCAAAATTCCTCTCAAACATAGTACTAAATAATATATGAATTACTTCTCCTAATACTTCCTACCGATCGACCCCTAAATAATAAATTACAGCACTACAATGTATGATGCAACTGCAAAGTATTTGCTTGTAGAGATACCTCCACAGAATAGCTAATTTCCATCTCTCAGTGGACCTTCTAGCTACACTTGACATGGAGCAAATTCCTTCACTGACCACATTCTTGTTTTTTTCAATAAAAGCACAAAGCTCACTAGCAAGGGGTGGTGGTATCTCTTTGACCTCGGGGAATTTATGAATGTCTTGAAACTTAAATAGGATGTTGAGCAACCTACAATCTTCTGGAGCAGTTGTTTGAAGAACTTCCAATGTGGTTCTGCATTTCGTAATTAGCCATCTCATTGCAACAACTTCACTCTCTGTTGAAAGTCTGTTCCCTGAATAAACAAGGTGTACAACAGATTTGCGACTGGTTTTAGGGACTGCCCAGAATCTTAATGTTGATAGTAGTGCAAAGGATGGCTTCCCATCTGGATGAATGTATAGTGACTCATTATCCCATGAGCAGAGAGAATACATATCTGGTTCTAAAGGTATAAAGGCCTTGTCATTTGGGTTCTCAGTCAGAAGAAATCCGTAGTGTTGTAGAAGCTCCAGATTGGTGTAGGTTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327040" ref_strand="+" ref_description="SGN-E327040 [cTOC-18-F11]">
      <seq>atttcttcaattatgcagcacctgaagaggaaacatctatttatgaagatcaaggtgctggaaagccttattttatgcaagaaaacagtacacttaaatcagaaactgaattggattctaccactaggctaatagatgctggatatgagaaagacgtttcttcataccatttctatgctagaagaaactaccggaaaggagaccaggttcttctaagctacggaacctacaccaatctggagcttctacaacactatggatttcttctgactgagaacccaaatgacaaggcctttatacctttagaaccagatatgtattctctctgctcatgggataatgagtcactatacattcatccagatgggaagccatcctttgcactactatcaacattgcgattctgggcagtccctaaaaccagtcgcaaatctgttgtacaccttgtttattcagggaacagactttcaacagagagtgaagttgttgcaatgagatggctaattatgaaatgcagaaccacattggaagttcttcaaacaactgctccagaagattgtaggttgctcaacatcctatataagtttcaagacatttcataattccccgagggtcaagagataccaccaccccttgctagtgagctttgtgcttttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="50402" stop="48871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50102" g_stop="49897" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49896" i_stop="49625" i_length="272">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49624" g_stop="49171" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="660" r_length="454" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E327040" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50102" e_stop="49897"/>
          <exon e_start="49624" e_stop="49171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATGAGAAAGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTG</genome_strand>
        <mrna_strand>ATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATGAGAAAGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAG................................................................................................................................................................................................................................................................................GTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTTCATAATTCCCCGAGGGTCAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333952" ref_strand="+" ref_description="SGN-E333952 [cTOD-24-L3]">
      <seq>acgtttcttcataccatttctatgctagaagaaactaccggaaaggagaccaggtgattctgaaatgcttccttccttttaatacttcttttctttatgtgtggcattcagtaaattaatagaagtggttcctttccattaataagttgtgaggtggatgctccattacttgatattcaggatattaagaactacaaaaatgaacagcgcttgcattgcatcaaatgtaaagtgtcattatcacgacagtttgccatctcagtttgaattattttcttgtttgaaggagttgctttgatcccactagcttgattgatcactgcaggttcttctaagctacggaacctacaccaatctggagcttctacaacactatggatttcttctgactgagaacccaaatgacaaggcctttatacctttagaaccagatatgtattctctctgctcatgggataatgagtcactatacattcatccagatgggaagccatcctttgcactactatcaacattgcgattctgggcagtccctaaaaccagtcgcaaatctgttgtacaccttgtttattcagggaacagactttcaacagagagtgaagttgttgcaatgagatggctaattatgaaatgcagaaccacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="50249" stop="49002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49949" g_stop="49302" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E333952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49949" e_stop="49302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGA</genome_strand>
        <mrna_strand>ACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333546" ref_strand="+" ref_description="SGN-E333546 [cTOD-22-K19]">
      <seq>acgtttcttcataccatttctatgctagaagaaactaccggaaaggagaccaggtgattctgaaatgcttccttccttttaatacttcttttctttatgtgtggcattcagtaaattaatagaagtggttcctttccattaataagttgtgaggtggatgctccattacttgatattcaggatattaagaactacaaaaatgaacagcgcttgcattgcatcaaatgtaaagtgtcattatcacgacagtttgccatctcagtttgaattattttcttgtttgaaggagttgctttgatcccactagcttgattgatcactgcaggttcttctaagctacggaacctacaccaatctggagcttctacaacactatggatttcttctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="50249" stop="49258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49949" g_stop="49558" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E333546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49949" e_stop="49558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTG</genome_strand>
        <mrna_strand>ACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277044" ref_strand="+" ref_description="SGN-E277044 [cLEN-22-B13]">
      <seq>aaagtgaatcaaatctccaatatcagagtgttaaacagctgctctaccctatgtgatttgtttggaaagtaatgatgattccattcaatttcatgtttatgttatttgatcttatttctactgcagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctcaagccacaattcctcgctcttaaggcatggctctgggcctctggttctatatcctcgcggaccatgcatataccttgggatgaagctggatgtttatgccctgtgggagatttcttcaattatgcagcacctgaagaggaaacatctatttatgaagatcaaggtgctggaaagccttattttatgcaagaaaacagtacacttaaatcagaaactgaattggattctaccactaggctaatagatgctggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51244" stop="49656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50944" g_stop="50659" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50536" g_stop="50396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="427" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50163" g_stop="49956" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="635" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E277044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50944" e_stop="50659"/>
          <exon e_start="50536" e_stop="50396"/>
          <exon e_start="50163" e_stop="49956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACTTGAGCACCACTGTCTATCAATTAGACAATTTCGTGTCATATTCATGGTTTAACATGAAAAAAGTTTCTTACTGAAGATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATG</genome_strand>
        <mrna_strand>AAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT..........................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT........................................................................................................................................................................................................................................ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328762" ref_strand="+" ref_description="SGN-E328762 [cTOC-23-P19]">
      <seq>tacaacccaatcagattcatgtttgggaaaaaccctttgttttgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctcaagccacaattcctcgctcttaaggcatggctctgggcctctggttctatatcctcgcggaccatgcatataccttgggatgaagctggatgtttatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51736" stop="49811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51436" g_stop="51371" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51130" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="217" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50818" g_stop="50659" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="377" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50536" g_stop="50396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="518" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50163" g_stop="50111" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="571" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E328762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51436" e_stop="51371"/>
          <exon e_start="51280" e_stop="51130"/>
          <exon e_start="50818" e_stop="50659"/>
          <exon e_start="50536" e_stop="50396"/>
          <exon e_start="50163" e_stop="50111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACTTGAGCACCACTGTCTATCAATTAGACAATTTCGTGTCATATTCATGGTTTAACATGAAAAAAGTTTCTTACTGAAGATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCC</genome_strand>
        <mrna_strand>TACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTTTTGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT..........................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT........................................................................................................................................................................................................................................ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212739" ref_strand="+" ref_description="SGN-E212739 [cLEC-73-B4]">
      <seq>ttgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctcaagccacaattcctcgctcttaaggcatggctctgggcctctggttctgtaagtatggagtgaactcaagtgctaatctggaatagtgcgatgtcatttcttactctagtggtctgattagatatccctaatcattgcaagattcaaatgcggtgtttgattcgtgatctatctaacactgtctgtcttcattcacaatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51540" stop="49940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51240" g_stop="51130" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50818" g_stop="50659" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="271" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50536" g_stop="50240" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="568" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E212739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51240" e_stop="51130"/>
          <exon e_start="50818" e_stop="50659"/>
          <exon e_start="50536" e_stop="50240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACT</genome_strand>
        <mrna_strand>TTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT..........................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277979" ref_strand="+" ref_description="SGN-E277979 [cLER-4-K20]">
      <seq>aaagccggagggtatgtattaatcacaattcttttctttttattttttgattttctggtatgaagctgatgaggaatgaatgattttttgaattgatgaaggagaggcttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgctaatgactagtcaaaatcttatgatgaacgatgtggcattctccatttctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagcgaacaaggattgatgatgccatatgggttgcacaaaaagcttctaggaaggctgaacaggagtggaatgaagtgactcancttatgcatgaactgaagctcaagccacaattccttgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51681" stop="50123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51381" g_stop="51130" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50818" g_stop="50782" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="289" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50781" i_stop="50537" i_length="245">
            <donor d_prob="0.155" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50536" g_stop="50423" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="403" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E277979" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51381" e_stop="51130"/>
          <exon e_start="50818" e_stop="50782"/>
          <exon e_start="50536" e_stop="50423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTT</genome_strand>
        <mrna_strand>AAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTTTTTGATTTTCTGGTATGAAGCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGCTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGCTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTTCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGCGAACAAGG.....................................................................................................................................................................................................................................................ATTGATGATGCCATATGGGTTGCACAAAAAGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCANCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259987" ref_strand="+" ref_description="SGN-E259987 [cLEG-51-B14]">
      <seq>aagaattgaacctgaagagctttctgaaatgggcagcggagctgggaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaaattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacangagtggaatgaagtgactcagcttatgcatgaactgaagctcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51806" stop="50140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51506" g_stop="51371" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51130" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="287" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50818" g_stop="50687" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="419" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50686" i_stop="50537" i_length="150">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50536" g_stop="50440" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="516" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E259987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51506" e_stop="51371"/>
          <exon e_start="51280" e_stop="51130"/>
          <exon e_start="50818" e_stop="50687"/>
          <exon e_start="50536" e_stop="50440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGC</genome_strand>
        <mrna_strand>AAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAA......................................................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACANGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206548" ref_strand="+" ref_description="SGN-E206548 [cLEC-23-L22]">
      <seq>aatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51760" stop="50144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51460" g_stop="51371" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51130" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="241" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50818" g_stop="50659" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="401" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50536" g_stop="50444" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="494" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E206548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51460" e_stop="51371"/>
          <exon e_start="51280" e_stop="51130"/>
          <exon e_start="50818" e_stop="50659"/>
          <exon e_start="50536" e_stop="50444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTC</genome_strand>
        <mrna_strand>AATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT..........................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246570" ref_strand="+" ref_description="SGN-E246570 [cLEF-45-H17]">
      <seq>aatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacaggttattctttggagtataagaattagaattttgagttaggaactttatgtttttggggttttatatgatcacctagtaatatgaacttaactcaatctgattgttgtactttgtaccgaaaggctggatttttatgatgagcctgcagtttcttcaagtgtttatagttaacgcgttggttgtgcaaagtgaatcaaatctccaatatcagagtgttaaacagctgctctaccctatgtgatttgtttggaaagtaatgatgattccattcaatttcatgtttatgttatttgatcttatttctactgcagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatgtatttcatagtttgaaaaccttcttctgttcactgcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51760" stop="50315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51460" g_stop="51371" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="50615" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="755" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E246570" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51460" e_stop="51371"/>
          <exon e_start="51280" e_stop="50615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCT</genome_strand>
        <mrna_strand>AATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAAC-CTTCTTCTGTTCACTGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396195" ref_strand="+" ref_description="SGN-E396195 [TUS-24-L18]">
      <seq>gaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacaggttattctttggagtataagaattagaattttgagttaggaactttatgtttttggggttttatatgatcacctagtaatatgaacttaactcaatctgattgttgtactttgtaccgaaaggctggatttttatgatgagcctgcagtttcttcaagtgtttatagttaacgcgttggttgtgcaaagtgaatcaaatctccaatatcagagtgttaaacagctgctctaccctatgtgatttgtttggaaagtaatgatgattccattcaatttcatgtttatgttatttgatcttatttctactgcagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51761" stop="50447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51461" g_stop="51371" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="50747" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="625" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E396195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51461" e_stop="51371"/>
          <exon e_start="51280" e_stop="50747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAG</genome_strand>
        <mrna_strand>GAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299693" ref_strand="+" ref_description="SGN-E299693 [cLEW-1-C18]">
      <seq>ggaaagccgccatggaagaagctgaagaattgaacctgaagagctttctgaaatgggcagcggagctgggaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51830" stop="51071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51530" g_stop="51371" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E299693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51530" e_stop="51371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG</genome_strand>
        <mrna_strand>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317715" ref_strand="+" ref_description="SGN-E317715 [cTOB-8-H17]">
      <seq>tcaattctaatcagcacgagtaaacaaaaaacaaaaaacaaaaaaaagattgaatggtctaaagtattcaaaaatatataggagtaatttgaacaagaaaatgctgctaaaattcttgtgatcagcaacaagcaacaaggaggccatttttttttgttttaactttctttcaactgatgttgatgtgttaaaaaaaaaccttgttcaactaataggagctttctttctattgctattcgcagaaactcagaaatacaaggtttttggttgttgttgatgagtgagtgcattatacatctgtttgtgtaagccaaagtcggttaactttcttattatgcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="55817" stop="57125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56117" g_stop="56358" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56359" i_stop="56725" i_length="367">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56726" g_stop="56825" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="342" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E317715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56117" e_stop="56358"/>
          <exon e_start="56726" e_stop="56825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAGGTTATTTCTTTAAATTCCCCCGTACCTTTCATTATTAATCTGTTTTTTTTTTAACTTAATATAATATTAAAGATTTGAACACCCTTTTCCTTTTCTAGATAGTCTCTACGTGTATCAAAGGTAGTAAGGGAACTTATTATAATCTAATTGACTATATATAGTAAGCTCCAATCCAATTACTTGAAGAAAGTGTGAAAAAGCATATTCATTTGGGGTGAGTTGAGTAATTGGCTTTGTGCTGTTGCTGATTTGAATTCTTGGTATTGGGATACTTTTTTTAATTTGTTGATAAAGTTTCAATCTTTATGATTTTTGTGTGGTCATAACTGTATCTCATTGTGTTTATTTGGTTTATCTCATTGTGCAGAAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATT</genome_strand>
        <mrna_strand>TCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAG...............................................................................................................................................................................................................................................................................................................................................................................AAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329448" ref_strand="+" ref_description="SGN-E329448 [cTOD-11-A22]">
      <seq>ctctagtgggtatctactaggctgaggtgacaaggtaacataaaggaaagacaaaaacttgggaattgtaggtgtctgttgtttcagcatgtctgttgctttgttgtgggttgtttctccgaattccgaggtctcatacgggacaggattcttggattcagtccgagaagggaaccggggtttggaatcatccaggttcccatctcgggataggaattcgatgtggaaaggaggattcaagaaaggtgggagacaggggtggaattttgggtttttaaatgcagatttgagatattcgtgtttaggaagatcaagaactgagaatggaaggagtttttctgtacagtctagtttggtggctagtccagctggagaaatggctgtgtcatcagaaaaaaaagtgtatgaggtggtattgaagcaggcagctttagtgaagaggcatctgatatctactgatgacatacaagtgaagccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="56564" stop="57693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="57393" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E329448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="57393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTT</genome_strand>
        <mrna_strand>CTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212846" ref_strand="+" ref_description="SGN-E212846 [cLEC-73-K6]">
      <seq>ttctccgaattccgaggtctcatacgggacaggattcttggattcagtccgagaagggaaccggggtttggaatcatccaggttcccatctcgggataggaattcgatgtggaaaggaggattcaagaaaggtgggagacaggggtggaattttgggtttttaaatgcagatttgagatattcgtgtttaggaagatcaagaactgagaatggaaggagtttttctgtacagtctagtttggtggctagtccagctggagaaatggctgtgtcatcagaaaaaaagtgtatgaggtggtattgaagcaggcagctttagtgaagaggcatctgatatctactgatgacatacaagtgaagccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="56678" stop="58669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56978" g_stop="57435" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="508" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58304" g_stop="58369" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="574" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E212846" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56978" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTT</genome_strand>
        <mrna_strand>TTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAG-AAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737011" ref_strand="+" ref_description="SGN-E737011 [LC08AF04]">
      <seq>cagtctagtttggtggctagtccagctggagaaatggctgtgtcatcagaaaaaaaagtgtatgaggtggtattgaagcaggcagctttagtgaagaggcatctgatatctactgatgacatacaagtgaagccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctttagataggtgggaggcaaggctggaagatatttttaacgggcggccatttgatatgcttgatgcagctttatccgacactgtttccagatttccggttgatattcagccattcagagatatggttgaaggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagaggggcaggaaattctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="56907" stop="59656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57207" g_stop="57435" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="280" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58304" g_stop="58476" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="453" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="689" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59213" g_stop="59356" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="833" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E737011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57207" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58476"/>
          <exon e_start="58750" e_stop="58985"/>
          <exon e_start="59213" e_stop="59356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAGGTTAATCTCTCTAAGTGGATCACCATTATCTTCGCCAGATTCAGATGCTATTCTCTTTTGCTGAGTGCTTTTCCGATGCAAGTACTTATAGAATTTGATATACTTTTCTTCTTTGTATCTCTCTCTCTCTCTCTAATAACATTTACTTATATTTGTTATTTGATTAGCAAATTAGGCAACTAGTTTTCATTTGCTATCACTGCAGCTGACGTTTATCTTGTGTTTAATAACCTCCCCATGTGAAGTGTCTGATTATTCATTTATCTGGTGCAGCCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGA</genome_strand>
        <mrna_strand>CAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG.................................................................................................................................................................................................................................................................................CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGGCAGGAAATTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739713" ref_strand="+" ref_description="SGN-E739713 [LC18CC09]">
      <seq>cagtctagtttggtggctagtccagctggagaaatggctgtgtcatcagaaaaaaaagtgtatgaggtggtattgaagcaggcagctttagtgaagaggcatctgatatctactgatgacatacaagtgaagccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctttagataggtgggaggcaaggctggaagatatttttaacgggcggccatttgatatgcttgatgcagctttatccgacactgtttccagatttccggttgatattcagccattcagagatatggttgaaggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaaaaagcaaatccagagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="56907" stop="59643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57207" g_stop="57435" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="280" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58304" g_stop="58476" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="453" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="689" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59213" g_stop="59343" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="820" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E739713" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57207" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58476"/>
          <exon e_start="58750" e_stop="58985"/>
          <exon e_start="59213" e_stop="59343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAGGTTAATCTCTCTAAGTGGATCACCATTATCTTCGCCAGATTCAGATGCTATTCTCTTTTGCTGAGTGCTTTTCCGATGCAAGTACTTATAGAATTTGATATACTTTTCTTCTTTGTATCTCTCTCTCTCTCTCTAATAACATTTACTTATATTTGTTATTTGATTAGCAAATTAGGCAACTAGTTTTCATTTGCTATCACTGCAGCTGACGTTTATCTTGTGTTTAATAACCTCCCCATGTGAAGTGTCTGATTATTCATTTATCTGGTGCAGCCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAA</genome_strand>
        <mrna_strand>CAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG.................................................................................................................................................................................................................................................................................CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAAAAGCAAATCCAGAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744482" ref_strand="+" ref_description="SGN-E744482 [GI|437019]">
      <seq>ggatccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctttagataggtgggaggcaaggctggaagatatttttaacgggcggccatttgatatgcttgatgcagctttatccgacactgtttccagatttccggttgatattcagccattcagagatatggttgaaggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttctgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctctagtgccccctaagtcaacttcttgcccactagcaaagacatgaatgaagtttctaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagctatctttgctacatgtgtttcatcatatcattaaaagtagattgtaaattcaatatgcctatttcttggtagattaatgtgtcttcactcttcacactcaaatcctcaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="57035" stop="60468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57335" g_stop="57435" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="152" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58304" g_stop="58476" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="325" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="561" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59213" g_stop="59405" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="754" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59804" g_stop="60168" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="1119" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E744482" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1119</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57335" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58476"/>
          <exon e_start="58750" e_stop="58985"/>
          <exon e_start="59213" e_stop="59405"/>
          <exon e_start="59804" e_stop="60168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAGGTTAATCTCTCTAAGTGGATCACCATTATCTTCGCCAGATTCAGATGCTATTCTCTTTTGCTGAGTGCTTTTCCGATGCAAGTACTTATAGAATTTGATATACTTTTCTTCTTTGTATCTCTCTCTCTCTCTCTAATAACATTTACTTATATTTGTTATTTGATTAGCAAATTAGGCAACTAGTTTTCATTTGCTATCACTGCAGCTGACGTTTATCTTGTGTTTAATAACCTCCCCATGTGAAGTGTCTGATTATTCATTTATCTGGTGCAGCCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</genome_strand>
        <mrna_strand>GGATCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG.................................................................................................................................................................................................................................................................................CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTGCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747044" ref_strand="+" ref_description="SGN-E747044 [GI|84874997]">
      <seq>gatatggttgatggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagtgatgttggagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="58459" stop="59285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58759" g_stop="58985" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E747044" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58759" e_stop="58985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA</genome_strand>
        <mrna_strand>GATATGGTTGATGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGTGATGTTGGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395191" ref_strand="+" ref_description="SGN-E395191 [TUS-41-K22]">
      <seq>ggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttctgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctctagtgccccctaagtcaacttcttccccactagcaaagacatgaatgaagtttctaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagctatctttgctacatgtgtttcatcatatcattaaaagtagattgtaaatttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="58579" stop="60410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58879" g_stop="58985" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59213" g_stop="59405" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="300" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59804" g_stop="60109" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="606" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="620"/>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E395191" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58879" e_stop="58985"/>
          <exon e_start="59213" e_stop="59405"/>
          <exon e_start="59804" e_stop="60109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAAT</genome_strand>
        <mrna_strand>GGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293702" ref_strand="+" ref_description="SGN-E293702 [cLET-21-F22]">
      <seq>gcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttctgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctctagtgccccctaagtcaacttcttccccactagcaaagacatgaatgaagtttctaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="58580" stop="60357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58880" g_stop="58985" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59213" g_stop="59405" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="299" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59804" g_stop="60057" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="553" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E293702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58880" e_stop="58985"/>
          <exon e_start="59213" e_stop="59405"/>
          <exon e_start="59804" e_stop="60057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTA</genome_strand>
        <mrna_strand>GCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398792" ref_strand="+" ref_description="SGN-E398792 [TUS-41-K22](-)">
      <seq>aaaggcgagtaataagtggagaatttttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttttgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctttagtgccccctaagtcaacttcttccccactagcaaagacatgaatgaagtttttaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagctatctttgctacatgtgtttcatcatatcattaaaagtagattgtaaattcaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="58991" stop="60410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59291" g_stop="59405" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59804" g_stop="60109" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="421" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="436"/>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E398792" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59291" e_stop="59405"/>
          <exon e_start="59804" e_stop="60109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAAT</genome_strand>
        <mrna_strand>AAAGGCGAGTAATAAGTGGAGAATTTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTTTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTTTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTTTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282253" ref_strand="+" ref_description="SGN-E282253 [cLES-4-G22]">
      <seq>acctggtgtactaggacatcacaacaaaaaaaaaaaagaggaaaaatggtagtgaaagtgtatggttcagcaatggctgcatgtccacaaagggtcatggtttgtcttatagaattgggagtcgattatgaacttatacatgttgatcttgattctctccagcagaaaaaacctgatttcttgcttttacagccatttggacaggttcctgtcattgaagagggcgatttcaggcttttcgaatctagagcaataataaggtactatgcagcaaaatatgaagacaagggaaagaaactaaccggaacgacattggaagaaaaagctctagtagatcaatggctagaagtggaatccaacaactacaatgacttggtatacaacatggtactccaactcctcgtattccctaaaatgggacacaaaagtgacttgatcgtcgtacaaaaatgtgccaacaatttagagaaagtgttcgatatctatgaacaaaggttgtccaagagtaaatacttagcaggagattttttctccttaactgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="61866" stop="63410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62166" g_stop="62356" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62357" i_stop="62458" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62459" g_stop="62507" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="241" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62508" i_stop="62805" i_length="298">
            <donor d_prob="0.629" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62806" g_stop="63110" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="546" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E282253" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62166" e_stop="62356"/>
          <exon e_start="62459" e_stop="62507"/>
          <exon e_start="62806" e_stop="63110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGGTGTACTAGGACATCACAAC-AAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAGGTAATATTTTAGTTGTCGCTTTTAACTTATCAAAAGAAAATCATATTTACTCATAACATTAATTACTTATGCTTCGAATCGCTTTGTTATATATTCTTGCAGCCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCGGTAACTATATACTATCATTATTAAAGCCAGGCCCATTGAGGCAAATCAGCCCACTCCACTAGAAGTACCAATATTAGTTCAAGATAACATAACCCACTTAGTTATTAACTCAACGTATTTGGATCCACCCAATTAAGAGTCGAGGGAATTGAGTTATGGCCCATTATTTTAGGAGATTTATTAAGTCAATTGATTTTAACGCTCAAATCCTCTTATTGATGTGGGTGAACTAGGTCGGTTTTTTTCTTTATTTAATTAAAGATGGTAACACGTAAATTTTGTTTTTGATTACTTTCAGAATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAGCTGATCTA</genome_strand>
        <mrna_strand>ACCTGGTGTACTAGGACATCACAACAAAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAG......................................................................................................CCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCG..........................................................................................................................................................................................................................................................................................................AATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAACTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712465" ref_strand="+" ref_description="SGN-E712465 [FB04DG04]">
      <seq>gtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaattcagccctaacagccaacttcaaattgtgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgatagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgtttttgctcctttaattctctagatttggtgcaattttattttgttgttgctcgttgtttggcacttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggtcccgtggttttttactcttcacatcgaaaggtttttcncgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggggccgggacccctttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="64630" stop="81666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64920" g_stop="65472" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65473" i_stop="67829" i_length="2357">
            <donor d_prob="0.836" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67830" g_stop="67857" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="577" r_length="28" r_score="0.679"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67858" i_stop="69046" i_length="1189">
            <donor d_prob="0.616" d_score="0.00"/>
            <acceptor a_prob="0.161" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69062" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="593" r_length="16" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69063" i_stop="71927" i_length="2865">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71928" g_stop="71960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="626" r_length="33" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E712465" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64920" e_stop="65472"/>
          <exon e_start="67830" e_stop="67857"/>
          <exon e_start="69047" e_stop="69062"/>
          <exon e_start="71928" e_stop="71960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCAAGGTAATGTTGGGTTATGGGTCTTTTTTCCCTTCCTATGTAGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTGTGCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTCAGCAGCCAAAAGAGAGAAAAAGAAAGAAATTCGCAGTAAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTGTTAGTGCCTTGTCTTTCCCAACAGGTAATTGGATCCCATTCATCATCAATATTCTCAACGACATATTCAGGGTTCCCTTGGAATACCAACTGCTCGTATTCAAGCTCCCCTAACCGGATTCCAGCAGGGGAATCAAGGTCATCAATGACAACGACAAGAGGTATTGGCATTTGAAAGTCAGACATTAGTATTTCAATGGCCTTTTTAGCTTTGTCAATGTATTCATAGTCGATAAAAAAGATCTTGGCTTCGGAGTGCTTGAGAATAAGGGCAACATTTTTAGCGTCCAGCCTCGTATTGATGGCGTTGAGTACAGCCCCTGCCATCGGCACAGCAAAATGCATTTCTAATAAGGCGGGTACATTTGGTGCAAGGACCGAGACCTACATGATCATAAAATATTTAACCTTATTTAAAATATGATCATATATACTAATTACACAGGTTAATTAATTTAAAATGTGAATCTAGATAGACTTACCACGTCGTTCTTGACAATATTTAAGGACTTTAACGAGGAAGCGAGGCGACGACAACGCTCATGGTTTTCACGCCAAGTGAATCGAATATTTGCATAAATAATAGAGGTGCGGTTGGCATAAGAATTAGAGGCTCTGGTTAAGAAGGTGAGAGGAGTAAGAGGCACATAATTAGCTCCACATTTAGGTAAATTGTCCATGGGATCTAAAAGTGTAAAGTTGAATTGATTTATAATTTGTTACTAATAAAAGTGTATGTTATGGAAAAGGTTTGTAAAGATAGGCTATAGAATTTGTGTAAGAGATGCAGCTCAGCGTTCTGTTTATATAGAGAAGAATCTCAGCCTAATTTCCCATGTCCATTTGGCCCCCTAATGGTTGTTTAGATGGAAATAATAAGGAAGTTGCGGTGAATGTGTAATACTAAAACCATATGCATCGACCTATACTACAGACGCGCGCACAAAAAAAAACAGTTCTTAAAAAAGGGACTAATAATCTTGAATGTTCTAATGTCTGGTAATTTTCACAATTTTTTTATAACGACAAGAGATTGTTACTTTAGATGTGTATAAGTAAAATCTCGCTTCAATACGAAAGCTGGCAAATTTTATTGGGAAAATTTTGGCGGGACGAGCCTAAACCACTGAGTCAGTTGTCACACAACTTTTTGTCACTTGGCGTCACCAATTTACCCAACTGGGACAATAACCTTAAGCCACTTATGTTTTAAACAATTCACCAATCCATCACTATTCGGATCGCTAGAGTAAACTTCTTAGTTTTGCGTTAAAATAATAATTTCAAAAAATATATAAAAAACATTATACTCTCTTCATTTCATATTAATTGAATTTTTGAATGTTTCACACCTCCCTATGTCCACAATTGTTATCATAGTAAGGTCATGCATACCTCTCAAGAAAAATTTAATGCGAAATTTAATTTGACTAATATAATCCTACAATATCAAGAATATCAAAAGTCCACATAACTTTTCAATTGAACTACACAATCATTAAGGGAAAATTTGAAAAAAAAAGACTAATTGTTTCTTGACTATTTAAATTGATAATTAATCTTGAACATCTACTTTTAATAAATTTACCAAATAATTGTAGACGGATGAAGTAATTAAATATAATTTTCATTTTTACCTTTATTAATTGTTGTCAAATTCAATGAAGTCATCACAAAGGATAAAATTAAAAGAATATTTTAAAAATTGAACAACTAAATTAATTTTAAAAATAAAAAATATCTCAAAAGTTTAAACAAAAAATAATTATTTAATTCCTCAAATTCAAATAATATCACACAAATTACGACACAAACCCATTTATACTGAGACGCTAAATTCTACTCATTAAGGATAAGATAATCGATACAGACGAAGACATAAAATGGGTTGTTGATTGAAGCAAAAACAAAAAAAAATGATTTTGTTTTTGTTCCATATGACGTGGGGTCAACTGATTTCATATTACATAGCAGCTCCCCTAAGGAACATAACTACCAAAAGAATATTATTTTAGTGCAACTTCATTAATTTATTTTATTTATCGATACATTCACACCACAAATTCAAATTTCAAGATATTGTCCAACATAAATAATGCTTCTACTTTTCCAACTTCTTAACAAAGAGTGTGTATTTACTTACTTATTTTCACGAAAAACAAAGAGCTGTTTGTTACACTTAAATAGAGTATCACAAAAAACAAAAAGTATAACTTAGATATCATTAATTCACAATTTATGTGATAAAGTTTATTTTTAATTTATATAAAAGAAACTATTTTTTATTTAATAAAATAATTTATAATCATATAAAATATTTTTTATAAATCAGACTTTTATGTTTTAATATTTATATGTATATTTTTAAAGTTAACACCAAACAAATAATACTCACATGAATTACGAGAAAGAAAATAATTTTTGGAGTTCTTCCCCTCTCCCTATATATATTATATAATAATACAAAATTAACCACATCATTTCAAGCCACCTGTTTTTGTTAAAAAAAATTATTTAGTTTTATTTAATCCACATGTTTTGGTTTAAAAAATATTATTTCGTTTTACTTAAGCCACATGCTCCTGTTACCCAATTCACTGTTATACTTGGTTGCTGTTTATTTCTCTTCTCTCACGTCTACTTTGAACGAATTCTATTAAATGTACACCAAAAAAATCTTTTTTTAAATTTTTTTTTGATAACAACTTTTTACGTTATATATTTAAGATCACAAAATTAAAGATAATTTTGTGAATTTGACATAAATTTAATTTAGGACTACATATTCAAAAACTTTTTTTATTTTTTAAAATTTCGTATCAAGTCAAACTATATAATTCTTTATGAAACGAAAGGAGTATTAAAAAGTGTTTTTTAATATAATGATAAAACTTTTCCTTGGGAAGAAATGTTCCTACATTTCTCAATTTACACTTTACTTAAACAAATACCCGTGATTTTACAAAGATTTGTTGATCCAAAAAATTAACAATATTAGTAGTAATTAATTACCATTTTAATAGAATCCCCTCATGTGATATGAATAATCTATTTATATCAAACATGAGTTACTTCTAACTAAATATCAAATACTGAATTATTTTTAAAATATACATAAAATATGAATTTACGGATAATGATATATTTACATTCAAAATAATAACTGAAATCACAATTTGAAACCTGAAGTCCTATTTTATTTTTGAAGACTCATTTTAAATTGAAGTTAAAACTTATGCGGATTCATAAACTAGCATTTTATTTTTGAAGGATATTTGAAAATAAAGCTAAAATATTATTTTTTTAAAAAATGATTTAATGTTTTTTAAAAAAGTTGAATTATTTTTTTTGAATTTGATAAGTAAATAAAAATATATTTCTCTAAAAAAAATTTAGATAAAAATAAAAGAAGGTCAACTAATATAAAATATTAATTTCTCGAATGAAATTTGTTTTGCCTATACTCATCGGAAGAGATATATTCCTTTATTCATAAAAAATAATAAAATAATTTAGGAAAAATGCAAGAAAAGTATGTTTCAACTATACTTACGGCCCATGGGCTTAATAAAAGTAGCTTTAAAAAAGTACTTTTGAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGTGTTTGGATAAAAGTGCTGAAGTTGTTATGCCAAACGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGGAAAAAAACATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTATTTTGAATATTGTCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTATACTAGAAAAATGACTACTAGCTTGGATTCATACATAATTTGACTAAAATATAATCTAGAATATGGTCCCATGAACAAGTACAGTTAGTCATGACTTTCATTGACTACAAAATCTAGCTTTTAACAATCAATTTGTGTTAAAAGAAAAAAGTTTGAATGAGAGAACTTTGAATTCCATGCTTTCACATATGCAACTAATAAACCCCTTCTTCACTTTAATATCTTTTATTCCTACTTAACAAACTTCACAAAAAGAAATTAATATCCTTCTTGGTCTATATATCAAACAAAGTAGTTTATCTTTATCTTTTTAATCAATTTTATTTGGTAATATTTTCAATATATAAAAAAATAAGACTCATAATTATCAAACATAGAAAGATGTATCGTTACCAAATATAGCAAGTATATATATTTTTTCTAAACATATAGTACAAAACAACACTTCAAATCTCACTGCATAATTTTTAAAAAGTGAAAAGGTGGATTCGATAAAAAAAATTCTGACTCCGTTAGTAATAATAACAATATGCTATTTTATTTGTATTTTACCATGAAATTGATGTTTTAATTAAGTGGGCTCCTTTTAGTTTGTTCAGTAGTATTGTTCAAACGCTTCATCAATCATACAAAGAACATAGAAATAAAGGCAATTATTTAATTTGACGTAATGATGTCCCCCTCCACTCCCCATCAACATCCAATCCCAAATTATTTTCTTAGTTAAATTACTATAGATATTTTCAAAATATTCATTTTTCAAAAAATAATGTAATATAATTTTCCTTGTACCAAACACACTCTAAGACCAAGTCTCGATCTTAACCTACATTTTCTTCTTGGGAAGTTTCAAGTTTGTTACTAAGTAAGAATTTAAAAAAAAAAAACGAAAAAATGAGTTTGTTGCATGTGGAAGTCAAATAATTGCCATGCAATTAGTCCTTTTGAATTTTGATTAGTAATAAAATATATTTGTTGACTCTATTTTTAAAAGCTAAATTCTATATTCAATGAAAGTCATGCTTCTAACTGTCCTTTGTTTTTTAAAAAATAAATTTCTACTTTGATCAACTTATGTCCCAATTATATATTTAATATATATGGTCTTTAATTCCGATCATGAGAATTATGGTAAAATAAATGTATTTTTAAATTTCGTATTCCTTCAATTAAATATTATTAACATTATTATTTGGAGAGTTTCACCAAAAAAAAAAACATAGCTTAAAGTTTTTCAAGAGGCTTGTATCAAATTCTGAAATCCGTCAAAAAAAATAGTATTAAATAACTACTTCCGATAAAAGTTAGGATAGAATATTTATTCCTAGTATTTCAACTATGTACATTTTCTATTGATTAAAGATCTGACCTAATCGACTCAATTAAAAGACCGTGGTTGTTATCTCTTATCTAATTCAATAATTTTCTTATTCCATGGAAGTTCATGATGAACATACAAGGAAAAGACTTTATAAATTATTCCAAATATCTTGTTCAAGAGAAAAGTGTTAGAAAAAAAGTTCTGAAAAAGAAAGCAACATGACAAGGGATTATATTGGCCCCTCCCCTCATTCTTCCACTATTGTGCTTGGTAAAGTTTCTGAAAAATTCACTATAAATATCCATTAATCATAATATTGGAAGACAATAAAGAATAATTGGTGATAGGCATTATAATAATTAATAGTAGCCACCACTCTAGTTTCTCTTCTTGTAATCACAACGACCTCATAATTTGCTATTTCTCTATTTCCAAATCAATTAGTATAACTAGTTCTTTTAAAAAATAAATATTAAATCACTAATTAAATTTTTATCTATCAACATACTACGAATAGTCTATTTTCTATTAAAAGCCACTCAGATGTGTTACTTCTGTATCAAAATACTTTTATTTTTATTTTTTAATGTCAAACCACATAATTTTCTTAAATATTTAATATATTGTATGAAAAAAATTGTAATTTATAATATTTTTCGTAGAAATTTTTGAATATCTTAACTTTTTTGTTGGTATTAAATAAATTCAATCAAATTTAACATTTATAAATTTGTTAAATGAATTCTTAAGACACAAAATATTTTCTCTGTCCAATAATACTTGTTCACCATTGATTTTTCACATGCACACATTAAAAGATACTCCCAAACATTTCTAAAGGAAATTTATTTAATAATAAAAATAAAATAGATAAAAAATAATAAATTATTTCTTAATTTTTCAAATAGGACGTTTCAATATATATAGTTTGAAAGGAATTGATTATGATTCTAAACTATTGTTGGTTTTGTATGATGAAAAATATCATAACCAGTGTTGAACAGACAATGGAGGGTGGTAATCAATCACCTTTTGTA</genome_strand>
        <mrna_strand>GTCGCTCTTAGTACTGTTGGGTTATG-GACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTG-TTTTTTCAGCAGCCAAAA-AGAGAGAAAGAGAGATTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGTGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGATAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGTTTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATTTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAAGGTTTTTCNC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCGGGGGGGGGGGCCGGGACCCCTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="65785" stop="64762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65485" g_stop="65062" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65485" e_stop="65062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTTACTGCGAATTTCTTTC-TTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTAAAAAAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577579" ref_strand="+" ref_description="SGN-E577579 [LE15AC07]">
      <seq>acaggggatatgggagtgattcatccagatgggtatttggaaatcaaagatagatgcaaagatgtaatcatatcaggtggagagaacattagcagcgttgaagtagaaagtgcaatactaaaacatccatatgtaatagaggcctctgttgtggcaatgccacatccaaggtggggtgaaagtccatgcgcctttgttatattgaggaaagactcgaacttgaaagaatcagatgtcatagcacactgtaggaaaaacttgccgggattcatggtaccaaagaaggttcaatttgtggatgaattgcctaaaacaggaaccgggaaagtgcagaagaatcatttgagagcagtggcaaagacatttgtcgtgtctgatcaaacaagcaaaaaatcaagccaaataaaaagggaaaatcctagatcatacaatcaaaattatgagcagattcttgctctgtctcgtctctagagattgaagaaagacttaacaagtgtttgaactttttcttttttctccttttggctgcagctgagttgtttaactctctctaatcacatctgtaattggtgttaactgtatgcgttgtcttcggatatttagtttttaatacttcaagaatttgtttataatttcatgttaatattttttttttgagtgttagtttatacaagttgacaagaaggtgattattatttctcagtataatcactaacactaccatctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="75493" stop="76822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75793" g_stop="76522" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-E577579" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75793" e_stop="76522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGGATATGGGAGTGATTCATCCAGATGGGTATTTGGAAATCAAAGATAGATGCAAAGATGTAATCATATCAGGTGGAGAGAACATTAGCAGCGTTGAAGTAGAAAGTGCAATACTAAAACATCCATATGTAATAGAGGCCTCTGTTGTGGCAATGCCACATCCAAGGTGGGGTGAAAGTCCATGCGCCTTTGTTATATTGAGGAAAGACTCGAACTTGAAAGAATCAGATGTCATAGCACACTGTAGGAAAAACTTGCCGGGATTCATGGTACCAAAGAAGGTTCAATTTGTGGATGAATTGCCTAAAACAGGAACCGGGAAAGTGCAGAAGAATCATTTGAGAGCAGTGGCAAAGACATTTGTCGTGTCTGATCAAACAAGCAAAAAATCAAGCCAAATAAAAAGGGAAAATCCTAGATCATACAATCAAAATTATGAGCAGATTCTTGCTCTGTCTCGTCTCTAGAGATTGAAGAAAGACTTAACAAGTGTTTGAACTTTTTCTTTTTTCTCCTTTTGGCTGCAGCTGAGTTGTTTAACTCTCTCTAATCACATCTGTAATTGGTGTTAACTGTATGCGTTGTCTTCGGATATTTAGTTTTTAATACTTCAAGAATTTGTTTATAATTTCATGTTAATATTTTTTTTTTGAATGTTAGTTTATACAAGTTGACAAGAAGGTGATTATTATTTCTCAGTATAATCACTAACACTACCATCTATCA</genome_strand>
        <mrna_strand>ACAGGGGATATGGGAGTGATTCATCCAGATGGGTATTTGGAAATCAAAGATAGATGCAAAGATGTAATCATATCAGGTGGAGAGAACATTAGCAGCGTTGAAGTAGAAAGTGCAATACTAAAACATCCATATGTAATAGAGGCCTCTGTTGTGGCAATGCCACATCCAAGGTGGGGTGAAAGTCCATGCGCCTTTGTTATATTGAGGAAAGACTCGAACTTGAAAGAATCAGATGTCATAGCACACTGTAGGAAAAACTTGCCGGGATTCATGGTACCAAAGAAGGTTCAATTTGTGGATGAATTGCCTAAAACAGGAACCGGGAAAGTGCAGAAGAATCATTTGAGAGCAGTGGCAAAGACATTTGTCGTGTCTGATCAAACAAGCAAAAAATCAAGCCAAATAAAAAGGGAAAATCCTAGATCATACAATCAAAATTATGAGCAGATTCTTGCTCTGTCTCGTCTCTAGAGATTGAAGAAAGACTTAACAAGTGTTTGAACTTTTTCTTTTTTCTCCTTTTGGCTGCAGCTGAGTTGTTTAACTCTCTCTAATCACATCTGTAATTGGTGTTAACTGTATGCGTTGTCTTCGGATATTTAGTTTTTAATACTTCAAGAATTTGTTTATAATTTCATGTTAATATTTTTTTTTTGAGTGTTAGTTTATACAAGTTGACAAGAAGGTGATTATTATTTCTCAGTATAATCACTAACACTACCATCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714008" ref_strand="+" ref_description="SGN-E714008 [FB10BA11]">
      <seq>agaagatcgaaggaacgttcctgcagaggaggcacgcttgtatgcagaggaaaatggcctctttttcatggagacctctgccaaaactgctgcgaatgtcaatgatattttctatgaaatagctaaacggttgcctacagctcaacccactcaaaatccagcaggaatggttcttgaaaacagaccagcagaaggatctcgaactgcatcatgttgtacttgaaaatcatcatctctcataaattcattgaacctttcctaatccttgtctagagttcacttgttctttcatgctgtgcttgtaccgatgaacatgaagtctggaagtgggagtggcatggttcatatggagtagaatatgtaaaaaagaagaaaacgatttctttagaagttcccttaatagaggcaggaggcacctgatttagtgcacgttggcttggtcctcacctcatgcttctggtttctctcttttcctattttgtaaatgattcaacctttacctcttcatttccacctgatgaagtccgaactctgttatgttattccttgaatcttgaataacctgctttggtttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="92037" stop="89651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91733" g_stop="91640" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="122" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91639" i_stop="90406" i_length="1234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90405" g_stop="89938" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="590" r_length="468" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E714008" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91733" e_stop="91640"/>
          <exon e_start="90405" e_stop="89938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAGGTATGATGATTTCTTTTCTCGTTTAAATATTTCCTTTTGTTGCTCTGTGTGTTTTTCATTTATTTCTAATGGTATATTAAGAGCAGGCAACATTATTATGCATCCAAGTGATTGAATCTTAAGGTGCAAGTCAAATGTAATTTTATCTTCAGTGGTTGTCATCTTGTGCTTATCCTATTATATCTGTTTCTTTTTCTTCGATTAATATCATATGTTAAGTTATTTTCTTTCGGGTTTAGCAACATAGGATTACTATTATATTTAAAAAACATTAGGCTTATTGTTTAACCTACACTCGAAGGGTTGAAAGGAGATAGTGCAACAACCTTGCCTTGGTGTTTGCACTTAAGTGCTGCCTAAGCAAGGTGAGCTGAAGCACTCAGTTCTTGTTATACCTAGCTTTAAAGCTTTAAGCACGCCTATTTGCTTTAGCCTAGTTTTACTTATACTATAGTTAGGCATCTCCAGTAGCTTAGTTCGTAAAGTGGAACTTTGTGGGATTCAACTTGTCTGAAAGTAGTGTTCTTCCCTTCCTGTTGTTTGGGATGATGAGAAGAGAGCAGTGTACATTTCTCTTTCCCCTTCATTTTCAATCGGAAAAGCTTGGAAAGACTAATGAGTTTCTCGCTCTGTTAAGAAAATGAGTTCTCGCTACACCTTTTTCACAACAAACCACCTTCAACCTTGCTCAAATATTTTATCTTACTGAATTCGAGCATAGTAATTTTACCCTATGTTTATTACAGTTTGTGATATATATATATATACAAGGGAAACCCGGAATCCCGCAGCTGCTACCCTTTGGGTGCTCACAGGGTAAAAACCCACTCCTATCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCGCACTAGGCAAGCTTGGTGCGACGAGCTCAACTCAGAAGGCAAATCCCTAGCTTTTGCTGGCAAGGGGTTCAAACCTAGACCTCCAACATGGAAGTCCCAAGCCCCAACATGGAGACCTCCAACATTTTTATCAATCTTTCTAAAAGTATGCTAATATTGAATGGGGAGAAACATCTCAAGTCTTTTACAAGTGTTAAAGTTATTTTTCTACACATGCCTAAACTCTAGCAGGTTAAAATTCTGAAAACTTTTATTCTTTTAGGGCTTGCACTTTATGTAGGTCTTTTACTTCTGTGTAAGAAAAATAGCATGTCTTTTTTATTTGCTTCGACTCCCTTAATCTTTGGAGTTTGCCATTTTGCAGCTAAACGGTTGCCTACAGCTCAACCCACTCAAAATCCAGCAGGAATGGTTCTTGAAAACAGACCAGCAGAAGGATCTCGAACTGCATCATGTTGTACTTGAAAATCATCATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTCTTCATTTCCACCTGATGAAGTCCGAACTCTGTTATGTTATTCCTTGAATCTTGAATAACCTGCTTTGGTTTCTTTTTAGCATATTGG</genome_strand>
        <mrna_strand>GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAACGGTTGCCTACAGCTCAACCCACTCAAAATCCAGCAGGAATGGTTCTTGAAAACAGACCAGCAGAAGGATCTCGAACTGCATCATGTTGTACTTGAAAATCATCATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTCTTCATTTCCACCTGATGAAGTCCGAACTCTGTTATGTTATTCCTTGAATCTTGAATAACCTGCTTTGGTTTCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215802" ref_strand="+" ref_description="SGN-E215802 [cLEL-15-G12](-)">
      <seq>atctctcataaattcattgaacctttcctaatccttgtctagagttcacttgttctttcatgctgtgcttgtaccgatgaacatgaagtctggaagtgggagtggcatggttcatatgaagtagaatatgtaaaaaagaagaaaacgatttctttagaagttcccttaatagaggcaggaggcacctgatttagtgcacgttggcttggtcctcacctcatgcttctggtttctctcttttcctattttgtaaatgattcaacctttacctcttcatttccacctgatgaagtccgaactctgttatgttattccttaaatcctgaataacctgctttggtttctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="90596" stop="89642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90296" g_stop="89945" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="366"/>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E215802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90296" e_stop="89945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTCTTCATTTCCACCTGATGAAGTCCGAACTCTGTTATGTTATTCCTTGAATCTTGAATAACCTGCTTTGGTTTCTTTTTAGC</genome_strand>
        <mrna_strand>ATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGAAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTCTTCATTTCCACCTGATGAAGTCCGAACTCTGTTATGTTATTCCTTAAATCCTGAATAACCTGCTTTGGTTTCTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357037" ref_strand="+" ref_description="SGN-E357037 [cTOS-22-G2]">
      <seq>gcttgtatgcagaggaaaatggcctctttttcatggagacctctgccaaaactgctgcgaatgtcaatgatattttctatgaaatagctaaacggttgcctacagctcaacccactcaaaatccagcaggaatggttcttgaaaacagaccagcagaaggatctcgaactgcatcatgttgtacttgaaaatcatcatctctcataaattcattgaacctttcctaatccttgtctagagttcacttgttctttcatgctgtgcttgtaccgatgaacatgaagtctggaagtgggagtggcatggttcatatggagtagaatatgtaaaaaagaagaaaacgatttctttagaagttcccttaatagaggcaggaggcacctgatttagtgcacgttggcttggtcctcacctcatgcttctgggttctctcctttcctaattttgaaatgattcaacctttacctctttcatttccacctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="92026" stop="89707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91726" g_stop="91640" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91639" i_stop="90406" i_length="1234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90405" g_stop="90007" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="487" r_length="400" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-E357037" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91726" e_stop="91640"/>
          <exon e_start="90405" e_stop="90007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAGGTATGATGATTTCTTTTCTCGTTTAAATATTTCCTTTTGTTGCTCTGTGTGTTTTTCATTTATTTCTAATGGTATATTAAGAGCAGGCAACATTATTATGCATCCAAGTGATTGAATCTTAAGGTGCAAGTCAAATGTAATTTTATCTTCAGTGGTTGTCATCTTGTGCTTATCCTATTATATCTGTTTCTTTTTCTTCGATTAATATCATATGTTAAGTTATTTTCTTTCGGGTTTAGCAACATAGGATTACTATTATATTTAAAAAACATTAGGCTTATTGTTTAACCTACACTCGAAGGGTTGAAAGGAGATAGTGCAACAACCTTGCCTTGGTGTTTGCACTTAAGTGCTGCCTAAGCAAGGTGAGCTGAAGCACTCAGTTCTTGTTATACCTAGCTTTAAAGCTTTAAGCACGCCTATTTGCTTTAGCCTAGTTTTACTTATACTATAGTTAGGCATCTCCAGTAGCTTAGTTCGTAAAGTGGAACTTTGTGGGATTCAACTTGTCTGAAAGTAGTGTTCTTCCCTTCCTGTTGTTTGGGATGATGAGAAGAGAGCAGTGTACATTTCTCTTTCCCCTTCATTTTCAATCGGAAAAGCTTGGAAAGACTAATGAGTTTCTCGCTCTGTTAAGAAAATGAGTTCTCGCTACACCTTTTTCACAACAAACCACCTTCAACCTTGCTCAAATATTTTATCTTACTGAATTCGAGCATAGTAATTTTACCCTATGTTTATTACAGTTTGTGATATATATATATATACAAGGGAAACCCGGAATCCCGCAGCTGCTACCCTTTGGGTGCTCACAGGGTAAAAACCCACTCCTATCCAATAGCTCGCAAACCACATAGGAGAGGTAACCCGCACTAGGCAAGCTTGGTGCGACGAGCTCAACTCAGAAGGCAAATCCCTAGCTTTTGCTGGCAAGGGGTTCAAACCTAGACCTCCAACATGGAAGTCCCAAGCCCCAACATGGAGACCTCCAACATTTTTATCAATCTTTCTAAAAGTATGCTAATATTGAATGGGGAGAAACATCTCAAGTCTTTTACAAGTGTTAAAGTTATTTTTCTACACATGCCTAAACTCTAGCAGGTTAAAATTCTGAAAACTTTTATTCTTTTAGGGCTTGCACTTTATGTAGGTCTTTTACTTCTGTGTAAGAAAAATAGCATGTCTTTTTTATTTGCTTCGACTCCCTTAATCTTTGGAGTTTGCCATTTTGCAGCTAAACGGTTGCCTACAGCTCAACCCACTCAAAATCCAGCAGGAATGGTTCTTGAAAACAGACCAGCAGAAGGATCTCGAACTGCATCATGTTGTACTTGAAAATCATCATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTC-TTCATTTCCACCTGATGA</genome_strand>
        <mrna_strand>GCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAACGGTTGCCTACAGCTCAACCCACTCAAAATCCAGCAGGAATGGTTCTTGAAAACAGACCAGCAGAAGGATCTCGAACTGCATCATGTTGTACTTGAAAATCATCATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGGTTCTCTCCTTTCCTAATTTTGAAATGATTCAACCTTTACCTCTTTCATTTCCACCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>47</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="26852" PGL_stop="28872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26852" e_stop="27164"/>
            <exon e_start="28456" e_stop="28872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26852" e_stop="27164" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="27165" i_stop="28455" i_length="1291"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="28456" e_stop="28872" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27164"/>
              <exon start="28456" stop="28872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27164"/>
              <exon start="28456" stop="28701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAG : AACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTAGGCCTATTGGGAAACTTGAAAGGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATAC</gDNA_template>
            <first_frame> F  *  K  V  L  *  V  F  A  F  L  S  P  L  H  *  I  P  *  P  N  F  V  S  V  C  A  H  K  Y  V  F  T  H  T  F  F  Y  *  F  V  C  G  A  N  F  V  C  F  V  V  V  H  S  E  F  R  L  C  K  C  S  N  S  N  S  E  S  W  E  Y  I  K  S  G  R  F  C  I  F  *  D  I  L  W  T  N  L  Q  S  Y  *  E  H  P  *  W  K  E  L  S  S  Y  P   : E  Q  H  K  N  G  Q  *  N  K  I  L  H  L  K  N  K  V  F  C  Y  P  T  S  K  L  L  D  R  D  *  L  L  F  S  R  Y  T  I  F  N  H  P  P  C  F  F  S  H  F  I  T  S  Y  Y  K  L  Y  M  S  F  W  Y  A  L  I  T  H  A  L  T  V  S  L  F  F  F  S  F  F  P  S  I  H  S  F  L  F  R  G  K  N  A  Q  F  *  Y  Y  S  D  S  C  I  T  R  L  K  I  F  A  W  N  I  A  A  S  R  P  I  G  K  L  E  R  H  N  I  N  I  R  G  L  P  M  C  T  E  T  I  </first_frame>
            <second_frame>  F  R  K  Y  Y  K  C  S  H  F  F  H  P  F  T  K  S  P  S  L  I  L  S  V  Y  V  H  I  N  M  Y  L  L  T  H  F  S  T  N  L  Y  V  V  Q  I  L  F  V  L  L  W  C  I  Q  S  L  D  Y  A  N  A  A  I  P  T  V  K  V  G  N  I  S  K  V  G  D  S  A  Y  F  R  I  Y  Y  G  Q  T  F  K  V  I  K  N  T  L  D  G  K  S  Y  L  L  I  Q  :  N  N  T  R  M  A  S  R  T  K  Y  C  T  S  R  I  K  S  F  V  I  P  L  A  N  Y  S  I  E  T  D  Y  F  F  P  G  T  P  F  L  T  I  L  L  V  F  F  P  T  L  *  H  H  I  I  S  F  I  C  L  F  G  T  R  *  *  L  M  H  *  L  F  L  S  F  S  S  L  S  F  L  Q  F  T  V  S  F  F  E  V  R  M  H  S  F  S  I  I  L  I  A  V  L  L  D  *  K  F  L  R  G  I  L  Q  L  L  G  L  L  G  N  L  K  G  I  T  S  T  Y  V  A  S  Q  C  V  L  K  L  Y </second_frame>
            <third_frame>   L  E  S  I  I  S  V  R  I  S  F  T  P  S  L  N  P  L  A  *  F  C  Q  C  M  C  T  *  I  C  I  Y  S  H  I  F  L  L  I  C  M  W  C  K  F  C  L  F  C  C  G  A  F  R  V  *  T  M  Q  M  Q  Q  F  Q  Q  *  K  L  G  I  Y  Q  K  W  E  I  L  H  I  L  G  Y  T  M  D  K  P  S  K  L  L  R  T  P  L  M  E  R  V  I  F  L  S  R :   T  T  Q  E  W  P  V  E  Q  N  I  A  P  Q  E  *  S  L  L  L  S  H  *  Q  T  T  R  S  R  L  T  T  F  F  Q  V  H  H  F  *  P  S  S  L  F  F  F  P  L  Y  N  I  I  L  *  A  L  Y  V  F  L  V  R  V  D  N  S  C  T  D  C  F  S  L  F  L  L  F  L  S  F  N  S  Q  F  P  F  S  R  *  E  C  T  V  L  V  L  F  *  *  L  Y  Y  *  I  E  N  F  C  V  E  Y  C  S  F  *  A  Y  W  E  T  *  K  A  *  H  Q  H  T  W  P  P  N  V  Y  *  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26853" stop="27164"/>
                    <exon start="28456" stop="28608"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKYYKCSHFFHPFTKSPSLILSVYVHINMYLLTHFSTNLYVVQILFVLLWCIQSLDYANAAIPTVKVGNISKVGDSAYFRIYYGQTFKVIKNTLDGKSYLLIQNNTRMASRTKYCTSRIKSFVIPLANYSIETDYFFPGTPFLTILLVFFPTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32728" PGL_stop="32880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32728" e_stop="32880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="32728" e_stop="32880" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32728" stop="32880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACGAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  R  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  E  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0144P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33842" PGL_stop="34638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33842" e_stop="34638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33842" e_stop="34638" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33842" stop="34638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33855" stop="34292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGACTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTAGAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGA</gDNA_template>
            <first_frame> A  T  F  S  L  L  Q  E  P  Y  L  H  Q  P  D  D  M  S  R  S  V  D  E  L  G  T  T  K  P  D  P  T  K  K  P  V  F  L  T  K  A  Q  R  E  Q  L  A  L  Q  R  R  H  D  E  I  A  E  Q  K  R  R  A  E  Q  L  L  Q  Q  Q  G  N  N  R  P  S  S  T  D  N  D  H  E  R  D  H  R  D  R  D  S  R  G  D  H  H  R  S  R  D  R  D  R  D  R  D  R  D  R  D  R  E  R  E  R  E  S  R  D  R  E  V  E  R  R  K  R  E  R  E  R  D  E  E  V  K  E  R  E  R  A  R  L  D  K  L  A  E  R  E  R  E  K  E  L  D  A  I  K  E  Q  Y  L  G  S  K  K  P  K  K  R  V  I  K  P  S  E  K  F  R  F  S  F  D  W  E  N  T  E  D  T  S  R  D  M  N  A  L  Y  Q  N  P  H  E  A  R  L  L  F  G  R  G  F  R  A  G  M  D  R  R  E  Q  K  K  L  A  A  K  N  E  R  E  L  R  E  E  I  W  K  K  D  G  V  E  E  S  A  V  E  A  A  A  L  K  K  K  E  Q  D  A  D  M  Y  D  T  F   </first_frame>
            <second_frame>  R  L  F  P  F  Y  K  N  P  I  C  I  S  R  T  I  *  V  G  Q  W  T  S  S  E  L  P  N  R  I  R  R  R  S  P  S  S  S  P  K  H  S  E  S  S  *  P  Y  S  A  A  T  M  K  S  P  N  R  N  G  G  P  N  S  F  S  N  N  R  V  T  T  A  L  P  P  P  I  T  T  M  N  E  I  I  V  T  E  I  V  G  V  T  T  I  A  P  G  T  G  T  G  T  E  T  E  T  E  I  G  K  E  K  G  S  R  G  T  G  R  W  S  A  G  S  A  R  G  S  V  T  K  R  *  R  N  E  S  E  L  D  W  T  N  *  L  S  E  S  E  R  K  S  L  M  Q  S  K  S  S  T  L  A  P  K  N  L  R  S  G  *  L  N  L  V  R  N  S  D  F  R  L  I  G  R  T  P  R  T  H  L  A  T  *  T  L  Y  T  K  T  L  T  K  P  A  Y  S  L  V  A  D  S  V  L  E  W  T  G  G  S  R  R  S  L  L  P  R  M  R  E  S  C  G  R  R  S  G  K  R  M  A  L  R  S  L  P  *  K  Q  L  P  *  R  R  R  N  R  M  P  T  C  M  T  L  L  </second_frame>
            <third_frame>   D  F  F  P  F  T  R  T  L  S  A  S  A  G  R  Y  E  S  V  S  G  R  A  R  N  Y  Q  T  G  S  D  E  E  A  R  L  P  H  Q  S  T  A  R  A  A  S  P  T  A  P  P  R  *  N  R  R  T  E  T  A  G  R  T  A  S  P  T  T  G  *  Q  P  P  F  L  H  R  *  R  P  *  T  R  S  S  *  Q  R  *  *  G  *  P  P  S  L  Q  G  P  G  Q  G  Q  R  Q  R  Q  R  *  G  K  R  K  G  V  E  G  P  G  G  G  A  P  E  A  R  E  G  A  *  R  R  G  E  G  T  R  A  S  S  T  G  Q  I  S  *  A  R  A  R  E  R  A  *  C  N  Q  R  A  V  P  W  L  Q  K  T  *  E  A  G  D  *  T  *  *  E  I  P  I  F  V  *  L  G  E  H  R  G  H  I  S  R  H  E  R  S  I  P  K  P  S  R  S  P  L  T  L  W  S  R  I  P  C  W  N  G  P  E  G  A  E  E  A  C  C  Q  E  *  E  R  A  A  G  G  D  L  E  K  G  W  R  *  G  V  C  R  R  S  S  C  P  E  E  E  G  T  G  C  R  H  V  *  H  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33842" stop="34636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATFSLLQEPYLHQPDDMSRSVDELGTTKPDPTKKPVFLTKAQREQLALQRRHDEIAEQKRRAEQLLQQQGNNRPSSTDNDHERDHRDRDSRGDHHRSRDRDRDRDRDRDRERERESRDREVERRKRERERDEEVKERERARLDKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEARLLFGRGFRAGMDRREQKKLAAKNERELREEIWKKDGVEESAVEAAALKKKEQDADMYDTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35029" PGL_stop="35756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35029" e_stop="35756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="35029" e_stop="35756" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35029" stop="35756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAGGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTGATATACCTGATG</gDNA_template>
            <first_frame> S  T  N  *  G  *  D  C  Q  V  R  T  L  F  G  Y  Q  S  C  F  Y  C  W  W  A  V  H  R  G  A  R  F  *  D  *  A  R  L  *  S  C  D  C  N  P  W  A  T  S  *  L  L  G  E  T  L  L  C  S  E  P  V  *  L  C  C  S  *  *  S  G  P  Y  D  *  H  G  F  *  A  S  S  C  W  C  T  G  C  Y  A  F  K  *  Y  E  T  G  E  *  G  *  R  A  *  *  E  E  N  L  S  N  H  L  Y  V  Q  C  Y  H  A  T  C  C  G  A  A  G  *  K  I  L  E  K  S  C  C  C  D  Y  W  H  C  W  K  D  Y  *  P  H  H  S  A  R  V  Y  G  K  G  I  R  E  N  V  *  T  A  E  I  A  G  *  A  W  R  *  D  S  Y  C  V  H  Q  H  *  E  A  G  *  F  C  C  Q  E  S  G  *  K  R  L  Q  G  N  H  T  A  W  W  K  V  S  G  A  K  R  N  Q  P  *  R  I  *  D  Q  E  V  Q  C  V  S  C  Y  *  R  C  W  S  W  Y  *  Y  T  *   </first_frame>
            <second_frame>  Q  Q  I  E  D  E  T  V  K  F  A  H  Y  L  G  I  K  V  V  S  I  V  G  G  Q  S  I  E  E  Q  G  F  R  I  R  Q  G  C  E  V  V  I  A  T  P  G  R  L  L  D  C  L  E  R  R  Y  C  V  L  N  Q  C  N  Y  V  V  L  D  E  A  D  R  M  I  D  M  G  F  E  P  Q  V  V  G  V  L  D  A  M  P  S  S  N  M  K  P  E  N  E  D  E  E  L  D  E  K  R  I  Y  R  T  T  Y  M  F  S  A  T  M  P  P  A  V  E  R  L  A  R  K  Y  L  R  N  P  V  V  V  T  I  G  T  A  G  K  T  T  D  L  I  T  Q  H  V  F  M  V  K  E  S  E  K  M  Y  K  L  Q  K  L  L  D  E  L  G  D  K  T  A  I  V  F  I  N  T  K  K  Q  A  D  F  V  A  K  N  L  D  K  N  G  Y  R  V  T  T  L  H  G  G  K  S  Q  E  Q  R  E  I  S  L  E  G  F  R  T  K  R  Y  N  V  L  V  A  T  D  V  A  G  R  G  I  D  I  P  D  </second_frame>
            <third_frame>   N  K  L  R  M  R  L  S  S  S  H  T  I  W  V  S  K  L  F  L  L  L  V  G  S  P  *  R  S  K  V  L  G  L  G  K  V  V  K  L  *  L  Q  P  L  G  D  F  L  I  A  W  R  D  V  I  V  F  *  T  S  V  I  M  L  F  L  M  K  R  T  V  *  L  T  W  V  L  S  L  K  L  L  V  Y  W  M  L  C  L  Q  V  I  *  N  R  R  M  R  M  K  S  L  M  R  R  E  F  I  E  P  L  I  C  S  V  L  P  C  H  L  L  W  S  G  W  L  E  N  T  *  E  I  L  L  L  *  L  L  A  L  L  E  R  L  L  T  S  S  L  S  T  C  L  W  *  R  N  Q  R  K  C  I  N  C  R  N  C  W  M  S  L  E  I  R  Q  L  L  C  S  S  T  L  R  S  R  L  I  L  L  P  R  I  W  I  K  T  A  T  G  *  P  H  C  M  V  E  S  L  R  S  K  E  K  S  A  L  K  D  L  G  P  R  G  T  M  C  *  L  L  L  T  L  L  V  V  V  L  I  Y  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35030" stop="35755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLLDCLERRYCVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQHVFMVKESEKMYKLQKLLDELGDKTAIVFINTKKQADFVAKNLDKNGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35808" PGL_stop="37781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35808" e_stop="36365"/>
            <exon e_start="37437" e_stop="37467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.822" e_score="0.995"/>
          <exon-only e_score="0.548"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="35808" e_stop="36365" e_length="558"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="36366" i_stop="37436" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="0.548">
            <gDNA_exon_boundary e_start="37437" e_stop="37467" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35808" stop="36365"/>
              <exon start="37437" stop="37467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTA : CAAGTGTAATTTAGGAAGCAAAATAAGAAAA</gDNA_template>
            <first_frame> I  V  L  D  V  Q  V  V  Q  E  R  R  V  *  P  Q  H  S  *  P  C  R  I  L  K  S  F  M  I  L  N  K  C  S  H  K  A  T  V  L  F  P  Q  N  L  P  G  T  R  L  R  S  S  S  Q  E  V  F  P  T  D  H  L  G  G  M  I  L  Y  L  F  I  K  V  G  I  A  T  Y  A  I  V  G  V  K  C  W  E  F  L  *  W  Y  L  L  K  K  M  S  *  V  G  D  *  W  S  W  *  I  D  R  R  V  Q  T  *  W  K  *  S  G  N  N  V  W  *  *  V  F  F  C  Y  *  Q  V  M  C  C  Q  L  C  *  R  D  L  L  F  Y  S  D  S  V  C  R  C  L  G  F  T  E  E  L  P  V  N  S  *  T  F  L  V  F  P  F  F  I  T  *  S  *  D  S  L  R  N  L  :  Q  V  *  F  R  K  Q  N  K  K  </first_frame>
            <second_frame>  S  Y  W  T  Y  R  S  C  R  K  D  G  C  S  H  N  I  L  D  H  A  G  Y  *  S  L  L  *  S  *  T  N  A  H  T  K  Q  Q  S  C  S  P  R  T  C  P  A  R  G  F  E  V  Q  A  R  K  Y  S  R  Q  T  T  *  E  E  *  Y  C  I  C  S  L  K  L  E  L  L  H  M  L  L  *  G  S  S  V  G  S  F  Y  N  G  I  C  *  K  K  *  A  R  W  V  I  D  G  V  G  R  *  I  G  G  F  K  H  N  G  S  E  V  V  T  M  F  G  N  E  F  F  S  V  T  N  K  *  C  A  V  S  F  A  E  G  I  C  F  F  I  L  I  P  F  V  D  A  *  A  L  L  K  S  F  L  *  T  L  K  H  F  L  C  S  L  S  L  L  L  N  L  K  I  V  S  G  T  Y :   K  C  N  L  G  S  K  I  R  K </second_frame>
            <third_frame>   R  I  G  R  T  G  R  A  G  K  T  G  V  A  T  T  F  L  T  M  Q  D  T  E  V  F  Y  D  L  K  Q  M  L  T  Q  S  N  S  P  V  P  P  E  L  A  R  H  E  A  S  K  F  K  P  G  S  I  P  D  R  P  P  R  R  N  D  T  V  F  V  H  *  S  W  N  C  Y  I  C  Y  C  R  G  Q  V  L  G  V  S  I  M  V  S  A  E  K  N  E  L  G  G  *  L  M  E  L  V  D  R  *  E  G  S  N  I  M  E  V  K  W  *  Q  C  L  V  M  S  F  F  L  L  L  T  S  N  V  L  S  A  L  L  K  G  F  A  F  L  F  *  F  R  L  S  M  P  R  L  Y  *  R  A  S  C  K  L  L  N  I  S  C  V  P  F  L  Y  Y  L  I  L  R  *  S  Q  E  L   : T  S  V  I  *  E  A  K  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35865" stop="36080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCRILKSFMILNKCSHKATVLFPQNLPGTRLRSSSQEVFPTDHLGGMILYLFIKVGIATYAIVGVKCWEFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35810" stop="36025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIGRTGRAGKTGVATTFLTMQDTEVFYDLKQMLTQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37308" e_stop="37781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37308" e_stop="37781" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37308" stop="37781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCT</gDNA_template>
            <first_frame> K  N  C  G  Q  K  F  *  S  V  P  L  *  *  L  W  L  N  F  H  P  L  G  S  L  L  W  P  F  C  F  F  I  N  F  D  R  H  I  F  Y  L  Q  Q  V  *  F  R  K  Q  N  K  K  S  I  S  H  K  D  V  W  S  R  M  *  C  R  H  A  E  I  Y  Q  V  S  E  L  E  I  V  E  S  I  D  V  S  L  L  C  L  F  L  I  F  V  Q  C  P  P  K  S  V  D  *  P  H  I  Q  Y  L  V  C  I  D  L  P  C  V  T  A  K  Y  K  D  *  E  N  F  N  Q  I  Y  A  S  L  Q  F  E  Q  L  F  I  C  E  L  P  F  I  Y  T  L  *  T  L  G  *  N  P </first_frame>
            <second_frame>  K  I  V  G  K  S  S  R  A  Y  L  C  D  N  C  G  L  T  F  T  L  S  G  L  S  F  G  P  S  V  F  S  S  I  L  I  G  T  S  F  I  C  S  K  C  N  L  G  S  K  I  R  K  V  Y  L  T  R  M  F  G  V  E  C  N  A  G  M  Q  K  Y  T  K  F  L  N  S  R  L  *  K  V  S  M  Y  L  C  F  A  C  F  *  S  L  Y  N  V  L  Q  K  V  *  I  D  P  I  F  N  T  L  F  A  *  I  F  H  V  *  L  Q  N  I  R  I  K  K  I  S  T  R  Y  M  P  L  C  N  L  N  N  C  L  F  V  S  Y  H  S  Y  I  R  F  R  P  W  A  E  I   </second_frame>
            <third_frame>   K  L  W  A  K  V  L  E  R  T  S  V  I  T  V  A  *  L  S  P  S  R  V  S  P  L  A  L  L  F  F  H  Q  F  *  S  A  H  L  L  S  A  A  S  V  I  *  E  A  K  *  E  K  Y  I  S  Q  G  C  L  E  *  N  V  M  Q  A  C  R  N  I  P  S  F  *  T  R  D  C  R  K  Y  R  C  I  F  A  L  L  V  S  D  L  C  T  M  S  S  K  K  C  R  L  T  P  Y  S  I  P  C  L  H  R  S  S  M  C  N  C  K  I  *  G  L  R  K  F  Q  P  D  I  C  L  S  A  I  *  T  I  V  Y  L  *  V  T  I  H  I  Y  A  L  D  P  G  L  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37309" stop="37548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIVGKSSRAYLCDNCGLTFTLSGLSFGPSVFSSILIGTSFICSKCNLGSKIRKVYLTRMFGVECNAGMQKYTKFLNSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47925" PGL_stop="44188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47925" e_stop="47468"/>
            <exon e_start="45916" e_stop="45833"/>
            <exon e_start="45703" e_stop="45614"/>
            <exon e_start="44896" e_stop="44188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47925" e_stop="47468" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45916" e_stop="45833" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45703" e_stop="45614" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="44896" e_stop="44188" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47925" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45614"/>
              <exon start="44896" stop="44482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47909" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47886" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45614"/>
              <exon start="44896" stop="44608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47880" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47870" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45614"/>
              <exon start="44896" stop="44609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47830" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44825" stop="44188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44824" stop="44188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG : CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG : GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG : GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTCACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCACTCCAAAAGCAGGCATATGAAGATGAAACATCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGCCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGACTAATTAATTAATGAGAAGATTGATTTCATCTAATGTATGAT</gDNA_template>
            <first_frame> Y  S  S  K  V  I  T  L  L  N  Y  K  P  *  K  K  C  *  E  E  E  S  L  H  Y  Y  H  R  L  H  S  K  M  F  Q  S  T  A  N  P  S  R  F  L  N  P  Y  S  H  L  H  K  S  Y  H  F  C  N  S  L  N  A  P  S  P  A  L  D  H  W  G  V  S  F  A  E  L  T  V  F  *  A  *  M  I  C  K  I  T  K  V  L  G  S  R  R  L  G  R  E  E  V  L  G  L  V  K  G  R  R  R  V  V  D  I  R  V  R  K  L  E  G  R  I  S  S  G  L  K  V  D  R  P  H  F  V  A  V  C  L  N  V  D  L  R  T  R  S  V  S  H  F  S :   Q  L  G  W  E  R  L  Q  I  *  *  M  L  G  R  L  T  R  Q  S  *  S  Q  *  K  L  *  R :   I  P  V  Q  *  G  S  K  *  K  M  E  P  G  *  W  G  V  G  L  N  L  F  N  G  P  S  I  *  R :   F  Q  G  *  P  L  E  L  K  Q  L  W  K  Q  R  V  G  L  *  G  E  C  I  T  T  N  L  G  C  G  H  Y  *  S  L  S  G  L  R  K  R  A  G  C  S  R  D  Q  Q  G  L  H  Q  N  *  R  I  R  W  I  A  L  G  G  C  L  P  Q  P  S  H  F  L  L  *  L  K  R  L  S  P  C  L  L  P  R  L  D  S  D  *  L  S  S  C  F  I  D  L  G  S  I  A  R  E  Q  F  L  A  S  C  S  F  P  K  A  F  I  L  G  F  E  C  S  P  I  A  I  D  I  Q  K  *  N  L  T  C  *  I  F  *  V  T  L  S  S  L  K  D  V  F  S  *  V  F  L  D  S  Q  Q  *  P  S  L  L  *  I  E  T  E  C  L  N  I  S  L  Q  K  Q  A  Y  E  D  E  T  S  L  *  R  W  Y  L  F  S  F  T  F  Q  C  L  P  F  L  L  I  K  L  *  C  S  E  D  D  N  L  Y  N  L  E  Q  S  G  L  I  N  *  *  E  D  *  F  H  L  M  Y  D </first_frame>
            <second_frame>  I  A  V  R  *  L  H  C  S  T  I  N  P  R  R  N  V  E  K  K  N  H  F  T  T  I  I  V  F  T  P  K  C  S  N  L  R  R  T  H  Q  D  F  S  T  H  I  H  I  F  T  K  V  T  T  F  A  I  L  S  T  P  H  L  Q  H  W  I  I  G  V  S  V  S  Q  S  L  Q  S  S  E  P  K  *  F  A  R  *  Q  R  C  *  E  A  E  D  S  E  G  K  R  Y  W  V  W  *  R  E  D  G  G  S  W  T  *  G  S  E  S  *  R  D  V  *  V  R  V  *  R  W  T  D  P  T  S  S  P  C  A  *  T  W  I  *  E  P  V  Q  S  H  I  S   : A  S  W  V  G  K  D  C  K  S  D  K  C  W  E  D  *  L  V  R  V  D  H  N  E  N  S  K   : G  F  R  C  N  R  E  A  N  R  R  W  S  Q  V  D  G  A  W  G  *  T  Y  S  M  A  H  P  S  R   : G  F  K  G  D  R  *  S  *  S  S  C  G  S  S  G  W  V  C  K  E  S  A  L  Q  Q  T  W  V  A  G  T  T  E  A  *  V  V  *  E  K  G  Q  V  A  P  E  T  S  K  A  S  T  K  T  E  G  *  G  G  *  H  W  A  A  A  C  P  N  Q  A  T  S  F  C  S  *  R  G  *  V  R  V  C  C  P  G  L  I  V  T  S  F  L  H  V  L  *  I  *  V  P  L  Q  G  S  S  F  W  L  H  V  A  S  L  K  P  L  Y  L  V  L  S  V  P  Q  L  P  *  I  F  R  N  K  I  S  L  A  E  F  F  E  *  P  *  V  H  S  R  M  Y  F  H  R  Y  F  W  I  P  N  N  N  L  R  F  F  R  L  K  Q  S  V  L  I  F  H  S  K  S  R  H  M  K  M  K  H  L  S  R  D  G  I  S  F  L  L  H  S  S  A  C  L  F  Y  *  *  S  F  D  A  L  K  M  T  I  C  T  I  *  S  K  V  D  *  L  I  N  E  K  I  D  F  I  *  C  M   </second_frame>
            <third_frame>   *  Q  *  G  D  Y  I  A  Q  L  *  T  L  E  E  M  L  R  R  R  I  T  S  L  L  S  S  S  S  L  Q  N  V  P  I  Y  G  E  P  I  K  I  S  Q  P  I  F  T  S  S  Q  K  L  P  L  L  Q  F  S  Q  R  P  I  S  S  I  G  S  L  G  C  Q  F  R  R  A  Y  S  L  L  S  L  N  D  L  Q  D  N  K  G  A  R  K  Q  K  T  R  K  G  R  G  I  G  S  G  K  G  K  T  A  G  R  G  H  K  G  Q  K  A  R  G  T  Y  K  F  G  F  E  G  G  Q  T  P  L  R  R  R  V  P  K  R  G  F  K  N  P  F  S  L  T  F  Q  :  P  V  G  L  G  K  I  A  N  L  I  N  A  G  K  I  D  S  S  E  L  I  T  M  K  T  L  K  :  D  S  G  A  I  G  K  Q  I  E  D  G  A  R  L  M  G  R  G  A  E  L  I  Q  W  P  I  H  L  E  :  V  S  R  V  T  A  R  A  K  A  A  V  E  A  A  G  G  S  V  R  R  V  H  Y  N  K  L  G  L  R  A  L  L  K  P  E  W  F  E  K  K  G  R  L  L  P  R  P  A  R  P  P  P  K  L  K  D  K  V  D  S  I  G  R  L  P  A  P  T  K  P  L  P  F  V  V  E  E  A  E  S  V  S  A  A  P  A  *  *  *  L  A  F  F  M  F  Y  R  S  R  F  H  C  K  G  A  V  F  G  F  M  *  L  P  *  S  L  Y  T  W  F  *  V  F  P  N  C  H  R  Y  S  E  I  K  S  H  L  L  N  F  L  S  D  L  K  F  T  Q  G  C  I  F  I  G  I  S  G  F  P  T  I  T  F  A  S  L  D  *  N  R  V  S  *  Y  F  T  P  K  A  G  I  *  R  *  N  I  S  L  E  M  V  S  L  F  F  Y  I  P  V  P  A  F  S  I  D  K  A  L  M  L  *  R  *  Q  F  V  Q  F  R  A  K  W  T  N  *  L  M  R  R  L  I  S  S  N  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47890" stop="47468"/>
                    <exon start="45916" stop="45833"/>
                    <exon start="45703" stop="45614"/>
                    <exon start="44896" stop="44633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEEMLRRRITSLLSSSSLQNVPIYGEPIKISQPIFTSSQKLPLLQFSQRPISSIGSLGCQFRRAYSLLSLNDLQDNKGARKQKTRKGRGIGSGKGKTAGRGHKGQKARGTYKFGFEGGQTPLRRRVPKRGFKNPFSLTFQPVGLGKIANLINAGKIDSSELITMKTLKDSGAIGKQIEDGARLMGRGAELIQWPIHLEVSRVTARAKAAVEAAGGSVRRVHYNKLGLRALLKPEWFEKKGRLLPRPARPPPKLKDKVDSIGRLPAPTKPLPFVVEEAESVSAAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51530" PGL_stop="48780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51371"/>
            <exon e_start="51280" e_stop="50659"/>
            <exon e_start="50536" e_stop="50396"/>
            <exon e_start="50163" e_stop="49897"/>
            <exon e_start="49624" e_stop="48780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.754" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51371" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="50659" e_length="622"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50536" e_stop="50396" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.706" acc_prob="0.817">
            <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50163" e_stop="49897" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.754">
            <gDNA_intron_boundary i_start="49896" i_stop="49625" i_length="272"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="49624" e_stop="48780" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51461" stop="51371"/>
              <exon start="51280" stop="50747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50944" stop="50659"/>
              <exon start="50536" stop="50396"/>
              <exon start="50163" stop="49956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50102" stop="49897"/>
              <exon start="49624" stop="49171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49494" stop="48780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT : ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATGAGAAAGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAG : GTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATACATATGATTTAATACCATGGAATTTATCTATGTAAGATTTTCTTGATTTTATATTTTATATTTATACAAATAATATTAAATAAATAAGCTT</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R  L  F  F  G  V  *  E  L  E  F  *  V  R  N  F  M  F  L  G  F  Y  M  I  T  *  *  Y  E  L  N  S  I  *  L  L  Y  F  V  P  K  G  W  I  F  M  M  S  L  Q  F  L  Q  V  F  I  V  N  A  L  V  V  Q  S  E  S  N  L  Q  Y  Q  S  V  K  Q  L  L  Y  P  M  *  F  V  W  K  V  M  M  I  P  F  N  F  M  F  M  L  F  D  L  I  S  T  A  D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  I :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L  L  R  H  G  S  G  P  L  V  L :   Y  P  R  G  P  C  I  Y  L  G  M  K  L  D  V  Y  A  L  W  E  I  S  S  I  M  Q  H  L  K  R  K  H  L  F  M  K  I  K  V  L  E  S  L  I  L  C  K  K  T  V  H  L  N  Q  K  L  N  W  I  L  P  L  G  *  *  M  L  D  M  R  K  T  F  L  H  T  I  S  M  L  E  E  T  T  G  K  E  T  R :   F  F  *  A  T  E  P  T  P  I  W  S  F  Y  N  T  M  D  F  F  *  L  R  T  Q  M  T  R  P  L  Y  L  *  N  Q  I  C  I  L  S  A  H  G  I  M  S  H  Y  T  F  I  Q  M  G  S  H  P  L  H  Y  Y  Q  H  C  D  S  G  Q  S  L  K  P  V  A  N  L  L  Y  T  L  F  I  Q  G  T  D  F  Q  Q  R  V  K  L  L  Q  *  D  G  *  L  *  N  A  E  P  H  W  K  F  F  K  Q  L  L  Q  K  I  V  G  C  S  T  S  Y  I  S  F  K  T  F  I  N  S  P  R  S  K  R  Y  H  H  P  L  L  V  S  F  V  L  L  L  K  K  T  R  M  W  P  V  K  E  F  A  P  C  Q  V  *  L  E  G  P  L  R  D  G  N  *  L  F  C  G  G  I  S  T  S  K  Y  F  A  V  A  L  Y  I  V  V  L  *  F  I  I  *  G  S  I  G  R  K  H  *  E  K  *  F  I  Y  Y  L  V  L  Y  L  K  G  I  L  D  P  S  K  I  N  S  W  I  S  Y  T  S  F  M  V  S  *  D  A  L  L  I  H  M  I  *  Y  H  G  I  Y  L  C  K  I  F  L  I  L  Y  F  I  F  I  Q  I  I  L  N  K  *  A  </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T  G  Y  S  L  E  Y  K  N  *  N  F  E  L  G  T  L  C  F  W  G  F  I  *  S  P  S  N  M  N  L  T  Q  S  D  C  C  T  L  Y  R  K  A  G  F  L  *  *  A  C  S  F  F  K  C  L  *  L  T  R  W  L  C  K  V  N  Q  I  S  N  I  R  V  L  N  S  C  S  T  L  C  D  L  F  G  K  *  *  *  F  H  S  I  S  C  L  C  Y  L  I  L  F  L  L  Q  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K   : Y  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  *  G  M  A  L  G  L  W  F   : Y  I  L  A  D  H  A  Y  T  L  G  *  S  W  M  F  M  P  C  G  R  F  L  Q  L  C  S  T  *  R  G  N  I  Y  L  *  R  S  R  C  W  K  A  L  F  Y  A  R  K  Q  Y  T  *  I  R  N  *  I  G  F  Y  H  *  A  N  R  C  W  I  *  E  R  R  F  F  I  P  F  L  C  *  K  K  L  P  E  R  R  P   : G  S  S  K  L  R  N  L  H  Q  S  G  A  S  T  T  L  W  I  S  S  D  *  E  P  K  *  Q  G  L  Y  T  F  R  T  R  Y  V  F  S  L  L  M  G  *  *  V  T  I  H  S  S  R  W  E  A  I  L  C  T  T  I  N  I  A  I  L  G  S  P  *  N  Q  S  Q  I  C  C  T  P  C  L  F  R  E  Q  T  F  N  R  E  *  S  C  C  N  E  M  A  N  Y  E  M  Q  N  H  I  G  S  S  S  N  N  C  S  R  R  L  *  V  A  Q  H  P  I  *  V  S  R  H  S  *  I  P  R  G  Q  R  D  T  T  T  P  C  *  *  A  L  C  F  Y  *  K  K  Q  E  C  G  Q  *  R  N  L  L  L  V  K  C  S  *  K  V  H  *  E  M  E  I  S  Y  S  V  E  V  S  L  Q  A  N  T  L  Q  L  H  Y  T  L  *  C  C  N  L  L  F  R  G  R  S  V  G  S  I  R  R  S  N  S  Y  I  I  *  Y  Y  I  *  K  E  F  W  T  Q  V  K  L  I  H  G  L  V  I  H  P  S  W  F  R  R  M  H  Y  *  Y  I  *  F  N  T  M  E  F  I  Y  V  R  F  S  *  F  Y  I  L  Y  L  Y  K  *  Y  *  I  N  K  L </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  V  I  L  W  S  I  R  I  R  I  L  S  *  E  L  Y  V  F  G  V  L  Y  D  H  L  V  I  *  T  *  L  N  L  I  V  V  L  C  T  E  R  L  D  F  Y  D  E  P  A  V  S  S  S  V  Y  S  *  R  V  G  C  A  K  *  I  K  S  P  I  S  E  C  *  T  A  A  L  P  Y  V  I  C  L  E  S  N  D  D  S  I  Q  F  H  V  Y  V  I  *  S  Y  F  Y  C  R  Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L  K  A  W  L  W  A  S  G  S  :  I  S  S  R  T  M  H  I  P  W  D  E  A  G  C  L  C  P  V  G  D  F  F  N  Y  A  A  P  E  E  E  T  S  I  Y  E  D  Q  G  A  G  K  P  Y  F  M  Q  E  N  S  T  L  K  S  E  T  E  L  D  S  T  T  R  L  I  D  A  G  Y  E  K  D  V  S  S  Y  H  F  Y  A  R  R  N  Y  R  K  G  D  Q  :  V  L  L  S  Y  G  T  Y  T  N  L  E  L  L  Q  H  Y  G  F  L  L  T  E  N  P  N  D  K  A  F  I  P  L  E  P  D  M  Y  S  L  C  S  W  D  N  E  S  L  Y  I  H  P  D  G  K  P  S  F  A  L  L  S  T  L  R  F  W  A  V  P  K  T  S  R  K  S  V  V  H  L  V  Y  S  G  N  R  L  S  T  E  S  E  V  V  A  M  R  W  L  I  M  K  C  R  T  T  L  E  V  L  Q  T  T  A  P  E  D  C  R  L  L  N  I  L  Y  K  F  Q  D  I  H  K  F  P  E  V  K  E  I  P  P  P  L  A  S  E  L  C  A  F  I  E  K  N  K  N  V  A  S  E  G  I  C  S  L  S  S  V  A  R  R  S  T  E  R  W  K  L  A  I  L  W  R  Y  L  Y  K  Q  I  L  C  S  C  I  I  H  C  S  A  V  I  Y  Y  L  G  V  D  R  *  E  A  L  G  E  V  I  H  I  L  F  S  T  I  F  E  R  N  F  G  P  K  *  N  *  F  M  D  *  L  Y  I  L  H  G  F  V  G  C  I  T  N  T  Y  D  L  I  P  W  N  L  S  M  *  D  F  L  D  F  I  F  Y  I  Y  T  N  N  I  K  *  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50661" stop="50659"/>
                    <exon start="50536" stop="50396"/>
                    <exon start="50163" stop="49897"/>
                    <exon start="49624" stop="48998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIDDAIWAAQKASRKAEQEWNEVTQLMHELKLKPQFLALKAWLWASGSISSRTMHIPWDEAGCLCPVGDFFNYAAPEEETSIYEDQGAGKPYFMQENSTLKSETELDSTTRLIDAGYEKDVSSYHFYARRNYRKGDQVLLSYGTYTNLELLQHYGFLLTENPNDKAFIPLEPDMYSLCSWDNESLYIHPDGKPSFALLSTLRFWAVPKTSRKSVVHLVYSGNRLSTESEVVAMRWLIMKCRTTLEVLQTTAPEDCRLLNILYKFQDIHKFPEVKEIPPPLASELCAFIEKNKNVASEGICSLSSVARRSTERWKLAILWRYLYKQILCSCIIHCSAVIYYLGVDR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51371"/>
                    <exon start="51280" stop="51091"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQVILWSIRIRILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50866" stop="50659"/>
                    <exon start="50536" stop="50532"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHSISCLCYLILFLLQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49949" e_stop="48780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="49949" e_stop="48780" e_length="1170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49949" stop="49302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49949" stop="49558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49494" stop="48780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATACATATGATTTAATACCATGGAATTTATCTATGTAAGATTTTCTTGATTTTATATTTTATATTTATACAAATAATATTAAATAAATAAGCTT</gDNA_template>
            <first_frame> T  F  L  H  T  I  S  M  L  E  E  T  T  G  K  E  T  R  *  F  *  N  A  S  F  L  L  I  L  L  F  F  M  C  G  I  Q  *  I  N  R  S  G  S  F  P  L  I  S  C  E  V  D  A  P  L  L  D  I  Q  D  I  K  N  Y  K  N  E  Q  R  L  H  C  I  K  C  K  V  S  L  S  R  Q  F  A  I  S  V  *  I  I  F  L  F  E  G  V  A  L  I  P  L  A  *  L  I  T  A  G  S  S  K  L  R  N  L  H  Q  S  G  A  S  T  T  L  W  I  S  S  D  *  E  P  K  *  Q  G  L  Y  T  F  R  T  R  Y  V  F  S  L  L  M  G  *  *  V  T  I  H  S  S  R  W  E  A  I  L  C  T  T  I  N  I  A  I  L  G  S  P  *  N  Q  S  Q  I  C  C  T  P  C  L  F  R  E  Q  T  F  N  R  E  *  S  C  C  N  E  M  A  N  Y  E  M  Q  N  H  I  G  S  S  S  N  N  C  S  R  R  L  *  V  A  Q  H  P  I  *  V  S  R  H  S  *  I  P  R  G  Q  R  D  T  T  T  P  C  *  *  A  L  C  F  Y  *  K  K  Q  E  C  G  Q  *  R  N  L  L  L  V  K  C  S  *  K  V  H  *  E  M  E  I  S  Y  S  V  E  V  S  L  Q  A  N  T  L  Q  L  H  Y  T  L  *  C  C  N  L  L  F  R  G  R  S  V  G  S  I  R  R  S  N  S  Y  I  I  *  Y  Y  I  *  K  E  F  W  T  Q  V  K  L  I  H  G  L  V  I  H  P  S  W  F  R  R  M  H  Y  *  Y  I  *  F  N  T  M  E  F  I  Y  V  R  F  S  *  F  Y  I  L  Y  L  Y  K  *  Y  *  I  N  K  L </first_frame>
            <second_frame>  R  F  F  I  P  F  L  C  *  K  K  L  P  E  R  R  P  G  D  S  E  M  L  P  S  F  *  Y  F  F  S  L  C  V  A  F  S  K  L  I  E  V  V  P  F  H  *  *  V  V  R  W  M  L  H  Y  L  I  F  R  I  L  R  T  T  K  M  N  S  A  C  I  A  S  N  V  K  C  H  Y  H  D  S  L  P  S  Q  F  E  L  F  S  C  L  K  E  L  L  *  S  H  *  L  D  *  S  L  Q  V  L  L  S  Y  G  T  Y  T  N  L  E  L  L  Q  H  Y  G  F  L  L  T  E  N  P  N  D  K  A  F  I  P  L  E  P  D  M  Y  S  L  C  S  W  D  N  E  S  L  Y  I  H  P  D  G  K  P  S  F  A  L  L  S  T  L  R  F  W  A  V  P  K  T  S  R  K  S  V  V  H  L  V  Y  S  G  N  R  L  S  T  E  S  E  V  V  A  M  R  W  L  I  M  K  C  R  T  T  L  E  V  L  Q  T  T  A  P  E  D  C  R  L  L  N  I  L  Y  K  F  Q  D  I  H  K  F  P  E  V  K  E  I  P  P  P  L  A  S  E  L  C  A  F  I  E  K  N  K  N  V  A  S  E  G  I  C  S  L  S  S  V  A  R  R  S  T  E  R  W  K  L  A  I  L  W  R  Y  L  Y  K  Q  I  L  C  S  C  I  I  H  C  S  A  V  I  Y  Y  L  G  V  D  R  *  E  A  L  G  E  V  I  H  I  L  F  S  T  I  F  E  R  N  F  G  P  K  *  N  *  F  M  D  *  L  Y  I  L  H  G  F  V  G  C  I  T  N  T  Y  D  L  I  P  W  N  L  S  M  *  D  F  L  D  F  I  F  Y  I  Y  T  N  N  I  K  *  I  S   </second_frame>
            <third_frame>   V  S  S  Y  H  F  Y  A  R  R  N  Y  R  K  G  D  Q  V  I  L  K  C  F  L  P  F  N  T  S  F  L  Y  V  W  H  S  V  N  *  *  K  W  F  L  S  I  N  K  L  *  G  G  C  S  I  T  *  Y  S  G  Y  *  E  L  Q  K  *  T  A  L  A  L  H  Q  M  *  S  V  I  I  T  T  V  C  H  L  S  L  N  Y  F  L  V  *  R  S  C  F  D  P  T  S  L  I  D  H  C  R  F  F  *  A  T  E  P  T  P  I  W  S  F  Y  N  T  M  D  F  F  *  L  R  T  Q  M  T  R  P  L  Y  L  *  N  Q  I  C  I  L  S  A  H  G  I  M  S  H  Y  T  F  I  Q  M  G  S  H  P  L  H  Y  Y  Q  H  C  D  S  G  Q  S  L  K  P  V  A  N  L  L  Y  T  L  F  I  Q  G  T  D  F  Q  Q  R  V  K  L  L  Q  *  D  G  *  L  *  N  A  E  P  H  W  K  F  F  K  Q  L  L  Q  K  I  V  G  C  S  T  S  Y  I  S  F  K  T  F  I  N  S  P  R  S  K  R  Y  H  H  P  L  L  V  S  F  V  L  L  L  K  K  T  R  M  W  P  V  K  E  F  A  P  C  Q  V  *  L  E  G  P  L  R  D  G  N  *  L  F  C  G  G  I  S  T  S  K  Y  F  A  V  A  L  Y  I  V  V  L  *  F  I  I  *  G  S  I  G  R  K  H  *  E  K  *  F  I  Y  Y  L  V  L  Y  L  K  G  I  L  D  P  S  K  I  N  S  W  I  S  Y  T  S  F  M  V  S  *  D  A  L  L  I  H  M  I  *  Y  H  G  I  Y  L  C  K  I  F  L  I  L  Y  F  I  F  I  Q  I  I  L  N  K  *  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49633" stop="48998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQVLLSYGTYTNLELLQHYGFLLTENPNDKAFIPLEPDMYSLCSWDNESLYIHPDGKPSFALLSTLRFWAVPKTSRKSVVHLVYSGNRLSTESEVVAMRWLIMKCRTTLEVLQTTAPEDCRLLNILYKFQDIHKFPEVKEIPPPLASELCAFIEKNKNVASEGICSLSSVARRSTERWKLAILWRYLYKQILCSCIIHCSAVIYYLGVDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51371"/>
            <exon e_start="51280" e_stop="51130"/>
            <exon e_start="50818" e_stop="50659"/>
            <exon e_start="50536" e_stop="50240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51371" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51130" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50818" e_stop="50659" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50536" e_stop="50240" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51460" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50659"/>
              <exon start="50536" stop="50444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51240" stop="51130"/>
              <exon start="50818" stop="50659"/>
              <exon start="50536" stop="50240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACT</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L  K  A  W  L  W  A  S  G  S  V  S  M  E  *  T  Q  V  L  I  W  N  S  A  M  S  F  L  T  L  V  V  *  L  D  I  P  N  H  C  K  I  Q  M  R  C  L  I  R  D  L  S  N  T  V  C  L  H  S  Q  C  T </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  I :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L  L  R  H  G  S  G  P  L  V  L  *  V  W  S  E  L  K  C  *  S  G  I  V  R  C  H  F  L  L  *  W  S  D  *  I  S  L  I  I  A  R  F  K  C  G  V  *  F  V  I  Y  L  T  L  S  V  F  I  H  N  V   </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K   : Y  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  *  G  M  A  L  G  L  W  F  C  K  Y  G  V  N  S  S  A  N  L  E  *  C  D  V  I  S  Y  S  S  G  L  I  R  Y  P  *  S  L  Q  D  S  N  A  V  F  D  S  *  S  I  *  H  C  L  S  S  F  T  M  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51371"/>
                    <exon start="51280" stop="51130"/>
                    <exon start="50818" stop="50659"/>
                    <exon start="50536" stop="50532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51371"/>
            <exon e_start="51280" e_stop="51130"/>
            <exon e_start="50818" e_stop="50659"/>
            <exon e_start="50536" e_stop="50396"/>
            <exon e_start="50163" e_stop="50111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51371" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51130" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50818" e_stop="50659" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50536" e_stop="50396" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.706" acc_prob="0.817">
            <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50163" e_stop="50111" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51460" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50659"/>
              <exon start="50536" stop="50444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51436" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50659"/>
              <exon start="50536" stop="50396"/>
              <exon start="50163" stop="50111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT : ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCC</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L  K  A  W  L  W  A  S  G  S  :  I  S  S  R  T  M  H  I  P  W  D  E  A  G  C  L  C   </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  I :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L  L  R  H  G  S  G  P  L  V  L :   Y  P  R  G  P  C  I  Y  L  G  M  K  L  D  V  Y  A  </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K   : Y  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  *  G  M  A  L  G  L  W  F   : Y  I  L  A  D  H  A  Y  T  L  G  *  S  W  M  F  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51371"/>
                    <exon start="51280" stop="51130"/>
                    <exon start="50818" stop="50659"/>
                    <exon start="50536" stop="50532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50661" stop="50659"/>
                    <exon start="50536" stop="50396"/>
                    <exon start="50163" stop="50113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIDDAIWAAQKASRKAEQEWNEVTQLMHELKLKPQFLALKAWLWASGSISSRTMHIPWDEAGCLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51371"/>
            <exon e_start="51280" e_stop="50615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51371" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51280" e_stop="50615" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51461" stop="51371"/>
              <exon start="51280" stop="50747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51460" stop="51371"/>
              <exon start="51280" stop="50615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCT</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R  L  F  F  G  V  *  E  L  E  F  *  V  R  N  F  M  F  L  G  F  Y  M  I  T  *  *  Y  E  L  N  S  I  *  L  L  Y  F  V  P  K  G  W  I  F  M  M  S  L  Q  F  L  Q  V  F  I  V  N  A  L  V  V  Q  S  E  S  N  L  Q  Y  Q  S  V  K  Q  L  L  Y  P  M  *  F  V  W  K  V  M  M  I  P  F  N  F  M  F  M  L  F  D  L  I  S  T  A  D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  M  Y  F  I  V  *  K  H  F  F  C  S  L  H  C  </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T  G  Y  S  L  E  Y  K  N  *  N  F  E  L  G  T  L  C  F  W  G  F  I  *  S  P  S  N  M  N  L  T  Q  S  D  C  C  T  L  Y  R  K  A  G  F  L  *  *  A  C  S  F  F  K  C  L  *  L  T  R  W  L  C  K  V  N  Q  I  S  N  I  R  V  L  N  S  C  S  T  L  C  D  L  F  G  K  *  *  *  F  H  S  I  S  C  L  C  Y  L  I  L  F  L  L  Q  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K  C  I  S  *  F  E  N  T  S  S  V  H  C  I  A </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  V  I  L  W  S  I  R  I  R  I  L  S  *  E  L  Y  V  F  G  V  L  Y  D  H  L  V  I  *  T  *  L  N  L  I  V  V  L  C  T  E  R  L  D  F  Y  D  E  P  A  V  S  S  S  V  Y  S  *  R  V  G  C  A  K  *  I  K  S  P  I  S  E  C  *  T  A  A  L  P  Y  V  I  C  L  E  S  N  D  D  S  I  Q  F  H  V  Y  V  I  *  S  Y  F  Y  C  R  Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  V  F  H  S  L  K  T  L  L  L  F  T  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51371"/>
                    <exon start="51280" stop="51091"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQVILWSIRIRILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50866" stop="50648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHSISCLCYLILFLLQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKCIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51130"/>
            <exon e_start="50818" e_stop="50782"/>
            <exon e_start="50536" e_stop="50423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.155" acc_prob="0.995" e_score="0.973"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="51530" e_stop="51130" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="50818" e_stop="50782" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.155" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50781" i_stop="50537" i_length="245"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="50536" e_stop="50423" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51381" stop="51130"/>
              <exon start="50818" stop="50782"/>
              <exon start="50536" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGG : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTT</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E  G  M  Y  *  S  Q  F  F  S  F  Y  S  W  I  F  L  Y  E  S  D  E  E  *  M  I  F  *  I  D  E  G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  V  C  I  N  H  N  S  F  L  F  I  L  G  F  S  Y  M  N  L  M  R  N  E  *  F  F  E  L  M  K  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L   </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G  Y  V  L  I  T  I  L  F  F  L  F  L  D  F  P  I  *  I  *  *  G  M  N  D  F  L  N  *  *  R  R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K   : D  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGYVLITILFFLFLDFPI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51282" stop="51130"/>
                    <exon start="50818" stop="50782"/>
                    <exon start="50536" stop="50532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="51530" e_stop="51371"/>
            <exon e_start="51280" e_stop="51130"/>
            <exon e_start="50818" e_stop="50687"/>
            <exon e_start="50536" e_stop="50440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51371" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51130" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50818" e_stop="50687" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50686" i_stop="50537" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="50536" e_stop="50440" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51506" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50687"/>
              <exon start="50536" stop="50440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAA : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGC</gDNA_template>
            <first_frame> G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S </first_frame>
            <second_frame>  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A   : N  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q   </second_frame>
            <third_frame>   K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51528" stop="51371"/>
                    <exon start="51280" stop="51130"/>
                    <exon start="50818" stop="50687"/>
                    <exon start="50536" stop="50441"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQIDDAIWAAQKASRKAEQEWNEVTQLMHELKLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="48870" PGL_stop="49611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48870" e_stop="49611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="48870" e_stop="49611" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48870" stop="49611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTAGTAATGCATCCTACGAAACCATGAAGGATGTATAACTAATCCATGAATTAATTTTACTTGGGTCCAAAATTCCTTTCAAATATAGTACTAAATAATATATGAATTACTTCTCCTAATGCTTCCTACCGATCGACCCCTAAATAATAAATTACAGCACTACAATGTATAATGCAACTGCAAAGTATTTGCTTGTAGAGATACCTCCACAGAATAGCTAATTTCCATCTCTCAGTGGACCTTCTAGCTACACTTGACAAGGAGCAAATTCCTTCACTGGCCACATTCTTGTTTTTTTCAATAAAAGCACAAAGCTCACTAGCAAGGGGTGGTGGTATCTCTTTGACCTCGGGGAATTTATGAATGTCTTGAAACTTATATAGGATGTTGAGCAACCTACAATCTTCTGGAGCAGTTGTTTGAAGAACTTCCAATGTGGTTCTGCATTTCATAATTAGCCATCTCATTGCAACAACTTCACTCTCTGTTGAAAGTCTGTTCCCTGAATAAACAAGGTGTACAACAGATTTGCGACTGGTTTTAGGGACTGCCCAGAATCGCAATGTTGATAGTAGTGCAAAGGATGGCTTCCCATCTGGATGAATGTATAGTGACTCATTATCCCATGAGCAGAGAGAATACATATCTGGTTCTAAAGGTATAAAGGCCTTGTCATTTGGGTTCTCAGTCAGAAGAAATCCATAGTGTTGTAGAAGCTCCAGATTGGTGTAGGTTCCGT</gDNA_template>
            <first_frame> V  L  V  M  H  P  T  K  P  *  R  M  Y  N  *  S  M  N  *  F  Y  L  G  P  K  F  L  S  N  I  V  L  N  N  I  *  I  T  S  P  N  A  S  Y  R  S  T  P  K  *  *  I  T  A  L  Q  C  I  M  Q  L  Q  S  I  C  L  *  R  Y  L  H  R  I  A  N  F  H  L  S  V  D  L  L  A  T  L  D  K  E  Q  I  P  S  L  A  T  F  L  F  F  S  I  K  A  Q  S  S  L  A  R  G  G  G  I  S  L  T  S  G  N  L  *  M  S  *  N  L  Y  R  M  L  S  N  L  Q  S  S  G  A  V  V  *  R  T  S  N  V  V  L  H  F  I  I  S  H  L  I  A  T  T  S  L  S  V  E  S  L  F  P  E  *  T  R  C  T  T  D  L  R  L  V  L  G  T  A  Q  N  R  N  V  D  S  S  A  K  D  G  F  P  S  G  *  M  Y  S  D  S  L  S  H  E  Q  R  E  Y  I  S  G  S  K  G  I  K  A  L  S  F  G  F  S  V  R  R  N  P  *  C  C  R  S  S  R  L  V  *  V  P  </first_frame>
            <second_frame>  Y  *  *  C  I  L  R  N  H  E  G  C  I  T  N  P  *  I  N  F  T  W  V  Q  N  S  F  Q  I  *  Y  *  I  I  Y  E  L  L  L  L  M  L  P  T  D  R  P  L  N  N  K  L  Q  H  Y  N  V  *  C  N  C  K  V  F  A  C  R  D  T  S  T  E  *  L  I  S  I  S  Q  W  T  F  *  L  H  L  T  R  S  K  F  L  H  W  P  H  S  C  F  F  Q  *  K  H  K  A  H  *  Q  G  V  V  V  S  L  *  P  R  G  I  Y  E  C  L  E  T  Y  I  G  C  *  A  T  Y  N  L  L  E  Q  L  F  E  E  L  P  M  W  F  C  I  S  *  L  A  I  S  L  Q  Q  L  H  S  L  L  K  V  C  S  L  N  K  Q  G  V  Q  Q  I  C  D  W  F  *  G  L  P  R  I  A  M  L  I  V  V  Q  R  M  A  S  H  L  D  E  C  I  V  T  H  Y  P  M  S  R  E  N  T  Y  L  V  L  K  V  *  R  P  C  H  L  G  S  Q  S  E  E  I  H  S  V  V  E  A  P  D  W  C  R  F  R </second_frame>
            <third_frame>   I  S  N  A  S  Y  E  T  M  K  D  V  *  L  I  H  E  L  I  L  L  G  S  K  I  P  F  K  Y  S  T  K  *  Y  M  N  Y  F  S  *  C  F  L  P  I  D  P  *  I  I  N  Y  S  T  T  M  Y  N  A  T  A  K  Y  L  L  V  E  I  P  P  Q  N  S  *  F  P  S  L  S  G  P  S  S  Y  T  *  Q  G  A  N  S  F  T  G  H  I  L  V  F  F  N  K  S  T  K  L  T  S  K  G  W  W  Y  L  F  D  L  G  E  F  M  N  V  L  K  L  I  *  D  V  E  Q  P  T  I  F  W  S  S  C  L  K  N  F  Q  C  G  S  A  F  H  N  *  P  S  H  C  N  N  F  T  L  C  *  K  S  V  P  *  I  N  K  V  Y  N  R  F  A  T  G  F  R  D  C  P  E  S  Q  C  *  *  *  C  K  G  W  L  P  I  W  M  N  V  *  *  L  I  I  P  *  A  E  R  I  H  I  W  F  *  R  Y  K  G  L  V  I  W  V  L  S  Q  K  K  S  I  V  L  *  K  L  Q  I  G  V  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0144P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56117" PGL_stop="56825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56117" e_stop="56358"/>
            <exon e_start="56726" e_stop="56825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56117" e_stop="56358" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="56359" i_stop="56725" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56726" e_stop="56825" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56117" stop="56358"/>
              <exon start="56726" stop="56825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAG : AAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATT</gDNA_template>
            <first_frame> S  I  L  I  S  T  S  K  Q  K  T  K  N  K  K  K  I  E  W  S  K  V  F  K  N  I  *  E  *  F  E  Q  E  N  A  A  K  I  L  V  I  S  N  K  Q  Q  G  G  H  F  F  L  F  *  L  S  F  N  *  C  *  C  V  K  K  K  P  C  S  T  N  R  S  F  L  S  I  A  I  R  R :   N  S  E  I  Q  G  F  W  L  L  L  M  S  E  C  I  I  H  L  F  V  *  A  K  V  G  *  L  S  Y  Y  A  I </first_frame>
            <second_frame>  Q  F  *  S  A  R  V  N  K  K  Q  K  T  K  K  R  L  N  G  L  K  Y  S  K  I  Y  R  S  N  L  N  K  K  M  L  L  K  F  L  *  S  A  T  S  N  K  E  A  I  F  F  C  F  N  F  L  S  T  D  V  D  V  L  K  K  N  L  V  Q  L  I  G  A  F  F  L  L  L  F  A   : E  T  Q  K  Y  K  V  F  G  C  C  *  *  V  S  A  L  Y  I  C  L  C  K  P  K  S  V  N  F  L  I  M  R   </second_frame>
            <third_frame>   N  S  N  Q  H  E  *  T  K  N  K  K  Q  K  K  D  *  M  V  *  S  I  Q  K  Y  I  G  V  I  *  T  R  K  C  C  *  N  S  C  D  Q  Q  Q  A  T  R  R  P  F  F  F  V  L  T  F  F  Q  L  M  L  M  C  *  K  K  T  L  F  N  *  *  E  L  S  F  Y  C  Y  S  Q  :  K  L  R  N  T  R  F  L  V  V  V  D  E  *  V  H  Y  T  S  V  C  V  S  Q  S  R  L  T  F  L  L  C  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0144P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56864" PGL_stop="60168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56864" e_stop="57435"/>
            <exon e_start="57543" e_stop="57593"/>
            <exon e_start="58304" e_stop="58476"/>
            <exon e_start="58750" e_stop="58985"/>
            <exon e_start="59213" e_stop="59405"/>
            <exon e_start="59804" e_stop="60168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56864" e_stop="57435" e_length="572"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57543" e_stop="57593" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58304" e_stop="58476" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58750" e_stop="58985" e_length="236"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59213" e_stop="59405" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="59804" e_stop="60168" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56864" stop="57393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56978" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57207" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58476"/>
              <exon start="58750" stop="58985"/>
              <exon start="59213" stop="59356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57207" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58476"/>
              <exon start="58750" stop="58985"/>
              <exon start="59213" stop="59343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57335" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58476"/>
              <exon start="58750" stop="58985"/>
              <exon start="59213" stop="59405"/>
              <exon start="59804" stop="60168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58759" stop="58985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58879" stop="58985"/>
              <exon start="59213" stop="59405"/>
              <exon start="59804" stop="60109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58880" stop="58985"/>
              <exon start="59213" stop="59405"/>
              <exon start="59804" stop="60057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59291" stop="59405"/>
              <exon start="59804" stop="60109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG : GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG : TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG : CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA : TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG : GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</gDNA_template>
            <first_frame> L  *  W  V  S  T  R  L  R  *  Q  G  N  I  K  E  R  Q  K  L  G  N  C  R  C  L  L  F  Q  H  V  C  C  F  V  V  G  C  F  S  E  F  R  G  L  I  R  D  R  I  L  G  F  S  P  R  R  E  P  G  F  G  I  I  Q  V  P  I  S  G  *  E  F  D  V  E  R  R  I  Q  E  R  W  E  T  G  V  E  F  W  V  F  K  C  R  F  E  I  F  V  F  R  K  I  K  N  *  E  W  K  E  F  F  C  T  V  *  F  G  G  *  S  S  W  R  N  G  C  V  I  R  K  K  S  V  *  G  G  I  E  A  G  S  F  S  E  E  A  S  D  I  Y  *  *  H  T  S  E  A  G  Y  C  S  S  G  *  F  G  L  V  E  *  S  I  *  S  L  W  R  S  M  C  R  V  C  K  D  I  L  L  R :   N  H  A  N  D  S  R  Q  K  K  S  Y  L  G  N  I  C :   V  V  Q  E  N  *  *  A  C  *  W  P  *  C  I  T  H  N  S  T  S  F  R  *  V  G  G  K  A  G  R  Y  F  *  R  A  A  I  *  Y  A  *  C  S  F  I  R  H  C  F  Q  I  S  G  *  Y  S   : A  I  Q  R  Y  G  *  R  N  A  Y  G  L  V  E  I  Q  I  Q  Q  L  *  *  A  I  S  L  L  L  L  C  R  W  Y  S  R  I  D  E  C  S  N  Y  G  H  C  T  *  I  K  G  N  D  R  E  C  I  *  C  S  F  G  F  R  D  R  K  S  T  N  Q  Y  T  Q  R  C  R  R  R  :  C  K  K  R  K  S  I  L  T  S  R  *  I  S  T  G  R  A  L  R  *  R  H  I  C  W  K  G  D  *  *  V  E  N  L  Y  E  E  A  N  P  E  G  K  E  I  L  *  *  G  R  E  R  C  H  R  T  E  F  C  *  *  M  A   : G  V  G  I  V  A  V  I  S  Q  D  T  G  R  D  *  S  K  R  L  Q  Q  L  H  K  E  G  L  C  E  Q  A  K  E  A  S  D  V  A  H  C  L  C  K  I  S  S  A  P  *  V  N  F  F  P  T  S  K  D  M  N  E  V  S  K  C  Q  L  E  A  Y  T  Y  T  K  E  N  R  Y  L  I  V  N  E  L  S  L  L  H  V  F  H  H  I  I  K  S  R  L  *  I  Q  Y  A  Y  F  L  V  D  *  C  V  F  T  L  H  T  Q  I  L  K  G </first_frame>
            <second_frame>  S  S  G  Y  L  L  G  *  G  D  K  V  T  *  R  K  D  K  N  L  G  I  V  G  V  C  C  F  S  M  S  V  A  L  L  W  V  V  S  P  N  S  E  V  S  Y  G  T  G  F  L  D  S  V  R  E  G  N  R  G  L  E  S  S  R  F  P  S  R  D  R  N  S  M  W  K  G  G  F  K  K  G  G  R  Q  G  W  N  F  G  F  L  N  A  D  L  R  Y  S  C  L  G  R  S  R  T  E  N  G  R  S  F  S  V  Q  S  S  L  V  A  S  P  A  G  E  M  A  V  S  S  E  K  K  V  Y  E  V  V  L  K  Q  A  A  L  V  K  R  H  L  I  S  T  D  D  I  Q  V  K  P  D  I  V  L  P  G  N  L  G  L  L  S  E  A  Y  D  R  C  G  E  V  C  A  E  Y  A  K  T  F  Y  L   : G  T  M  L  M  T  P  D  R  R  R  A  I  W  A  I  Y   : V  W  C  R  R  T  D  E  L  V  D  G  P  N  A  S  H  I  T  P  Q  A  L  D  R  W  E  A  R  L  E  D  I  F  N  G  R  P  F  D  M  L  D  A  A  L  S  D  T  V  S  R  F  P  V  D  I  Q  :  P  F  R  D  M  V  E  G  M  R  M  D  L  W  K  S  R  Y  N  N  F  D  E  L  Y  L  Y  C  Y  Y  V  A  G  T  V  G  L  M  S  V  P  I  M  G  I  A  P  E  S  K  A  T  T  E  S  V  Y  N  A  A  L  A  L  G  I  A  N  Q  L  T  N  I  L  R  D  V  G  E  D :   A  R  R  G  R  V  Y  L  P  Q  D  E  L  A  Q  A  G  L  S  D  E  D  I  F  A  G  K  V  T  D  K  W  R  I  F  M  K  K  Q  I  Q  R  A  R  K  F  F  D  E  A  E  K  G  V  T  E  L  S  S  A  S  R  W  P  :  V  L  A  S  L  L  L  Y  R  K  I  L  D  E  I  E  A  N  D  Y  N  N  F  T  R  R  A  Y  V  S  K  P  K  K  L  L  T  L  P  I  A  Y  A  R  S  L  V  P  P  K  S  T  S  S  P  L  A  K  T  *  M  K  F  L  N  A  N  *  R  P  I  H  T  L  K  K  T  G  T  *  L  *  M  S  Y  L  C  Y  M  C  F  I  I  S  L  K  V  D  C  K  F  N  M  P  I  S  W  *  I  N  V  S  S  L  F  T  L  K  S  S  R   </second_frame>
            <third_frame>   L  V  G  I  Y  *  A  E  V  T  R  *  H  K  G  K  T  K  T  W  E  L  *  V  S  V  V  S  A  C  L  L  L  C  C  G  L  F  L  R  I  P  R  S  H  T  G  Q  D  S  W  I  Q  S  E  K  G  T  G  V  W  N  H  P  G  S  H  L  G  I  G  I  R  C  G  K  E  D  S  R  K  V  G  D  R  G  G  I  L  G  F  *  M  Q  I  *  D  I  R  V  *  E  D  Q  E  L  R  M  E  G  V  F  L  Y  S  L  V  W  W  L  V  Q  L  E  K  W  L  C  H  Q  K  K  K  C  M  R  W  Y  *  S  R  Q  L  *  *  R  G  I  *  Y  L  L  M  T  Y  K  *  S  R  I  L  F  F  R  V  I  W  A  C  *  V  K  H  M  I  V  V  A  K  Y  V  Q  S  M  Q  R  H  F  T  *  :  E  P  C  *  *  L  Q  T  E  E  E  L  S  G  Q  Y  M  :  C  G  A  G  E  L  M  S  L  L  M  A  L  M  H  H  T  *  L  H  K  L  *  I  G  G  R  Q  G  W  K  I  F  L  T  G  G  H  L  I  C  L  M  Q  L  Y  P  T  L  F  P  D  F  R  L  I  F  S :   H  S  E  I  W  L  K  E  C  V  W  T  C  G  N  P  D  T  T  T  L  M  S  Y  I  S  I  V  T  M  S  L  V  Q  *  D  *  *  V  F  Q  L  W  A  L  H  L  N  Q  R  Q  R  Q  R  V  Y  I  M  Q  L  W  L  *  G  S  Q  I  N  *  P  I  Y  S  E  M  *  E  K   : M  Q  E  E  E  E  Y  T  Y  L  K  M  N  *  H  R  Q  G  S  P  M  K  T  Y  L  L  E  R  *  L  I  S  G  E  S  L  *  R  S  K  S  R  G  Q  G  N  S  L  M  R  Q  R  K  V  S  Q  N  *  V  L  L  V  D  G  R :   C  W  H  R  C  C  Y  I  A  R  Y  W  T  R  L  K  Q  T  T  T  T  T  S  Q  G  G  L  M  *  A  S  Q  R  S  F  *  R  C  P  L  L  M  Q  D  L  *  C  P  L  S  Q  L  L  P  H  *  Q  R  H  E  *  S  F  *  M  P  I  R  G  L  Y  I  H  *  R  K  Q  V  L  N  C  K  *  A  I  F  A  T  C  V  S  S  Y  H  *  K  *  I  V  N  S  I  C  L  F  L  G  R  L  M  C  L  H  S  S  H  S  N  P  Q  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56907" stop="57435"/>
                    <exon start="57543" stop="57593"/>
                    <exon start="58304" stop="58476"/>
                    <exon start="58750" stop="58985"/>
                    <exon start="59213" stop="59405"/>
                    <exon start="59804" stop="59983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKDKNLGIVGVCCFSMSVALLWVVSPNSEVSYGTGFLDSVREGNRGLESSRFPSRDRNSMWKGGFKKGGRQGWNFGFLNADLRYSCLGRSRTENGRSFSVQSSLVASPAGEMAVSSEKKVYEVVLKQAALVKRHLISTDDIQVKPDIVLPGNLGLLSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFNGRPFDMLDAALSDTVSRFPVDIQPFRDMVEGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARSLVPPKSTSSPLAKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="62166" PGL_stop="63110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62166" e_stop="62356"/>
            <exon e_start="62459" e_stop="62507"/>
            <exon e_start="62806" e_stop="63110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.629" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="62166" e_stop="62356" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62357" i_stop="62458" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62459" e_stop="62507" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.629" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62508" i_stop="62805" i_length="298"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="62806" e_stop="63110" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62166" stop="62356"/>
              <exon start="62459" stop="62507"/>
              <exon start="62806" stop="63110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTGGTGTACTAGGACATCACAACAAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAG : CCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCG : AATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAGCTGATCTA</gDNA_template>
            <first_frame> T  W  C  T  R  T  S  Q  Q  K  K  K  E  E  K  W  *  *  K  C  M  V  Q  Q  W  L  H  V  H  K  G  S  W  F  V  L  *  N  W  E  S  I  M  N  L  Y  M  L  I  L  I  L  S  S  R  K  N  L  I  S  C  F  Y  S :   H  L  D  R  F  L  S  L  K  R  A  I  S  G  F  S  :  N  L  E  Q  *  *  G  T  M  Q  Q  N  M  K  T  R  E  R  N  *  P  E  R  H  W  K  K  K  L  *  *  I  N  G  *  K  W  N  P  T  T  T  M  T  W  Y  T  T  W  Y  S  N  S  S  Y  S  L  K  W  D  T  K  V  T  *  S  S  Y  K  N  V  P  T  I  *  R  K  C  S  I  S  M  N  K  G  C  P  R  V  N  T  *  Q  E  I  F  S  P  *  L  I   </first_frame>
            <second_frame>  P  G  V  L  G  H  H  N  K  K  K  K  R  K  N  G  S  E  S  V  W  F  S  N  G  C  M  S  T  K  G  H  G  L  S  Y  R  I  G  S  R  L  *  T  Y  T  C  *  S  *  F  S  P  A  E  K  T  *  F  L  A  F  T   : A  I  W  T  G  S  C  H  *  R  G  R  F  Q  A  F  R :   I  *  S  N  N  K  V  L  C  S  K  I  *  R  Q  G  K  E  T  N  R  N  D  I  G  R  K  S  S  S  R  S  M  A  R  S  G  I  Q  Q  L  Q  *  L  G  I  Q  H  G  T  P  T  P  R  I  P  *  N  G  T  Q  K  *  L  D  R  R  T  K  M  C  Q  Q  F  R  E  S  V  R  Y  L  *  T  K  V  V  Q  E  *  I  L  S  R  R  F  F  L  L  S  *  S  </second_frame>
            <third_frame>   L  V  Y  *  D  I  T  T  K  K  K  R  G  K  M  V  V  K  V  Y  G  S  A  M  A  A  C  P  Q  R  V  M  V  C  L  I  E  L  G  V  D  Y  E  L  I  H  V  D  L  D  S  L  Q  Q  K  K  P  D  F  L  L  L  Q  :  P  F  G  Q  V  P  V  I  E  E  G  D  F  R  L  F   : E  S  R  A  I  I  R  Y  Y  A  A  K  Y  E  D  K  G  K  K  L  T  G  T  T  L  E  E  K  A  L  V  D  Q  W  L  E  V  E  S  N  N  Y  N  D  L  V  Y  N  M  V  L  Q  L  L  V  F  P  K  M  G  H  K  S  D  L  I  V  V  Q  K  C  A  N  N  L  E  K  V  F  D  I  Y  E  Q  R  L  S  K  S  K  Y  L  A  G  D  F  F  S  L  A  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62180" stop="62356"/>
                    <exon start="62459" stop="62507"/>
                    <exon start="62806" stop="63110"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DITTKKKRGKMVVKVYGSAMAACPQRVMVCLIELGVDYELIHVDLDSLQQKKPDFLLLQPFGQVPVIEEGDFRLFESRAIIRYYAAKYEDKGKKLTGTTLEEKALVDQWLEVESNNYNDLVYNMVLQLLVFPKMGHKSDLIVVQKCANNLEKVFDIYEQRLSKSKYLAGDFFSLADL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="64920" PGL_stop="71960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64920" e_stop="65472"/>
            <exon e_start="67830" e_stop="67857"/>
            <exon e_start="69047" e_stop="69062"/>
            <exon e_start="71928" e_stop="71960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.913"/>
          <exon-intron don_prob="0.616" acc_prob="0.161" e_score="0.679"/>
          <exon-intron don_prob="0.000" acc_prob="0.894" e_score="0.750"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="64920" e_stop="65472" e_length="553"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65473" i_stop="67829" i_length="2357"/>
          </intron>
          <exon e_serial="2" e_score="0.679">
            <gDNA_exon_boundary e_start="67830" e_stop="67857" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.616" acc_prob="0.161">
            <gDNA_intron_boundary i_start="67858" i_stop="69046" i_length="1189"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="69047" e_stop="69062" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="69063" i_stop="71927" i_length="2865"/>
          </intron>
          <exon e_serial="4" e_score="0.455">
            <gDNA_exon_boundary e_start="71928" e_stop="71960" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64920" stop="65472"/>
              <exon start="67830" stop="67857"/>
              <exon start="69047" stop="69062"/>
              <exon start="71928" stop="71960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCTCAAGGTAATGTTGGGTTATGGGTCTTTTTTCCCTTCCTATGTAGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTGTGCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTCAGCAGCCAAAAGAGAGAAAAAGAAAGAAATTCGCAGTAAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCAC : TTAAATAGAGTATCACAAAAAACAAAAA : ATAAAAATAAAAGAAG : ACAATGGAGGGTGGTAATCAATCACCTTTTGTA</gDNA_template>
            <first_frame> I  A  Q  G  N  V  G  L  W  V  F  F  P  F  L  C  R  *  I  K  A  Q  F  G  P  T  H  F  C  A  *  A  H  S  Y  E  A  N  I  S  L  F  *  V  L  F  S  D  F  L  E  R  V  F  Q  Q  P  K  E  R  K  R  K  K  F  A  V  K  N  P  A  I  T  T  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P   : L  K  *  S  I  T  K  N  K  K :   *  K  *  K  K  :  T  M  E  G  G  N  Q  S  P  F  V </first_frame>
            <second_frame>  *  L  K  V  M  L  G  Y  G  S  F  F  P  S  Y  V  D  K  *  K  P  N  L  D  Q  P  I  F  V  H  K  P  I  L  M  R  Q  I  *  A  Y  F  R  S  Y  F  Q  I  F  *  R  E  F  F  S  S  Q  K  R  E  K  E  R  N  S  Q  *  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  V  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  F  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  :  L  N  R  V  S  Q  K  T  K   : N  K  N  K  R  R :   Q  W  R  V  V  I  N  H  L  L   </second_frame>
            <third_frame>   S  S  R  *  C  W  V  M  G  L  F  S  L  P  M  *  I  N  K  S  P  I  W  T  N  P  F  L  C  I  S  P  F  L  *  G  K  Y  K  P  I  L  G  L  I  F  R  F  F  R  E  S  F  S  A  A  K  R  E  K  K  K  E  I  R  S  K  K  S  S  H  N  N  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  S  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T :   *  I  E  Y  H  K  K  Q  K  :  I  K  I  K  E   : D  N  G  G  W  *  S  I  T  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65326" stop="65472"/>
                    <exon start="67830" stop="67857"/>
                    <exon start="69047" stop="69062"/>
                    <exon start="71928" stop="71958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWCNLILLLLVVWHFVLWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHLNRVSQKTKNKNKRRQWRVVINHLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="65485" PGL_stop="65062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65485" e_stop="65062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="65485" e_stop="65062" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65485" stop="65062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTTACTGCGAATTTCTTTCTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTAAAAAAT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  V  V  M  A  G  F  F  T  A  N  F  F  L  F  L  S  F  G  C  *  K  T  L  S  K  K  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  D  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  W  L  D  F  L  L  R  I  S  F  F  F  S  L  L  A  A  E  K  L  S  L  K  N </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  T  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  W  I  F  Y  C  E  F  L  S  F  S  L  F  W  L  L  K  N  S  L  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0144P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75793" PGL_stop="76522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75793" e_stop="76522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75793" e_stop="76522" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75793" stop="76522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGGGGATATGGGAGTGATTCATCCAGATGGGTATTTGGAAATCAAAGATAGATGCAAAGATGTAATCATATCAGGTGGAGAGAACATTAGCAGCGTTGAAGTAGAAAGTGCAATACTAAAACATCCATATGTAATAGAGGCCTCTGTTGTGGCAATGCCACATCCAAGGTGGGGTGAAAGTCCATGCGCCTTTGTTATATTGAGGAAAGACTCGAACTTGAAAGAATCAGATGTCATAGCACACTGTAGGAAAAACTTGCCGGGATTCATGGTACCAAAGAAGGTTCAATTTGTGGATGAATTGCCTAAAACAGGAACCGGGAAAGTGCAGAAGAATCATTTGAGAGCAGTGGCAAAGACATTTGTCGTGTCTGATCAAACAAGCAAAAAATCAAGCCAAATAAAAAGGGAAAATCCTAGATCATACAATCAAAATTATGAGCAGATTCTTGCTCTGTCTCGTCTCTAGAGATTGAAGAAAGACTTAACAAGTGTTTGAACTTTTTCTTTTTTCTCCTTTTGGCTGCAGCTGAGTTGTTTAACTCTCTCTAATCACATCTGTAATTGGTGTTAACTGTATGCGTTGTCTTCGGATATTTAGTTTTTAATACTTCAAGAATTTGTTTATAATTTCATGTTAATATTTTTTTTTTGAATGTTAGTTTATACAAGTTGACAAGAAGGTGATTATTATTTCTCAGTATAATCACTAACACTACCATCTATCA</gDNA_template>
            <first_frame> T  G  D  M  G  V  I  H  P  D  G  Y  L  E  I  K  D  R  C  K  D  V  I  I  S  G  G  E  N  I  S  S  V  E  V  E  S  A  I  L  K  H  P  Y  V  I  E  A  S  V  V  A  M  P  H  P  R  W  G  E  S  P  C  A  F  V  I  L  R  K  D  S  N  L  K  E  S  D  V  I  A  H  C  R  K  N  L  P  G  F  M  V  P  K  K  V  Q  F  V  D  E  L  P  K  T  G  T  G  K  V  Q  K  N  H  L  R  A  V  A  K  T  F  V  V  S  D  Q  T  S  K  K  S  S  Q  I  K  R  E  N  P  R  S  Y  N  Q  N  Y  E  Q  I  L  A  L  S  R  L  *  R  L  K  K  D  L  T  S  V  *  T  F  S  F  F  S  F  W  L  Q  L  S  C  L  T  L  S  N  H  I  C  N  W  C  *  L  Y  A  L  S  S  D  I  *  F  L  I  L  Q  E  F  V  Y  N  F  M  L  I  F  F  F  *  M  L  V  Y  T  S  *  Q  E  G  D  Y  Y  F  S  V  *  S  L  T  L  P  S  I  </first_frame>
            <second_frame>  Q  G  I  W  E  *  F  I  Q  M  G  I  W  K  S  K  I  D  A  K  M  *  S  Y  Q  V  E  R  T  L  A  A  L  K  *  K  V  Q  Y  *  N  I  H  M  *  *  R  P  L  L  W  Q  C  H  I  Q  G  G  V  K  V  H  A  P  L  L  Y  *  G  K  T  R  T  *  K  N  Q  M  S  *  H  T  V  G  K  T  C  R  D  S  W  Y  Q  R  R  F  N  L  W  M  N  C  L  K  Q  E  P  G  K  C  R  R  I  I  *  E  Q  W  Q  R  H  L  S  C  L  I  K  Q  A  K  N  Q  A  K  *  K  G  K  I  L  D  H  T  I  K  I  M  S  R  F  L  L  C  L  V  S  R  D  *  R  K  T  *  Q  V  F  E  L  F  L  F  S  P  F  G  C  S  *  V  V  *  L  S  L  I  T  S  V  I  G  V  N  C  M  R  C  L  R  I  F  S  F  *  Y  F  K  N  L  F  I  I  S  C  *  Y  F  F  F  E  C  *  F  I  Q  V  D  K  K  V  I  I  I  S  Q  Y  N  H  *  H  Y  H  L  S </second_frame>
            <third_frame>   R  G  Y  G  S  D  S  S  R  W  V  F  G  N  Q  R  *  M  Q  R  C  N  H  I  R  W  R  E  H  *  Q  R  *  S  R  K  C  N  T  K  T  S  I  C  N  R  G  L  C  C  G  N  A  T  S  K  V  G  *  K  S  M  R  L  C  Y  I  E  E  R  L  E  L  E  R  I  R  C  H  S  T  L  *  E  K  L  A  G  I  H  G  T  K  E  G  S  I  C  G  *  I  A  *  N  R  N  R  E  S  A  E  E  S  F  E  S  S  G  K  D  I  C  R  V  *  S  N  K  Q  K  I  K  P  N  K  K  G  K  S  *  I  I  Q  S  K  L  *  A  D  S  C  S  V  S  S  L  E  I  E  E  R  L  N  K  C  L  N  F  F  F  F  L  L  L  A  A  A  E  L  F  N  S  L  *  S  H  L  *  L  V  L  T  V  C  V  V  F  G  Y  L  V  F  N  T  S  R  I  C  L  *  F  H  V  N  I  F  F  L  N  V  S  L  Y  K  L  T  R  R  *  L  L  F  L  S  I  I  T  N  T  T  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75793" stop="76263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGDMGVIHPDGYLEIKDRCKDVIISGGENISSVEVESAILKHPYVIEASVVAMPHPRWGESPCAFVILRKDSNLKESDVIAHCRKNLPGFMVPKKVQFVDELPKTGTGKVQKNHLRAVAKTFVVSDQTSKKSSQIKRENPRSYNQNYEQILALSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91733" PGL_stop="89938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91733" e_stop="91640"/>
            <exon e_start="90405" e_stop="89938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91733" e_stop="91640" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="91639" i_stop="90406" i_length="1234"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="90405" e_stop="89938" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91733" stop="91640"/>
              <exon start="90405" stop="89938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91726" stop="91640"/>
              <exon start="90405" stop="90007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90296" stop="89945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG : CTAAACGGTTGCCTACAGCTCAACCCACTCAAAATCCAGCAGGAATGGTTCTTGAAAACAGACCAGCAGAAGGATCTCGAACTGCATCATGTTGTACTTGAAAATCATCATCTCTCATAAATTCATTGAACCTTTCCTAATCCTTGTCTAGAGTTCACTTGTTCTTTCATGCTGTGCTTGTACCGATGAACATGAAGTCTGGAAGTGGGAGTGGCATGGTTCATATGGAGTAGAATATGTAAAAAAGAAGAAAACGATTTCTTTAGAAGTTCCCTTAATAGAGGCAGGAGGCACCTGATTTAGTGCACGTTGGCTTGGTCCTCACCTCATGCTTCTGGTTTCTCTCTTTTCCTATTTTGTAAATGATTCAACCTTTACCTCTTCATTTCCACCTGATGAAGTCCGAACTCTGTTATGTTATTCCTTGAATCTTGAATAACCTGCTTTGGTTTCTTTTTAGCATATTGG</gDNA_template>
            <first_frame> E  A  R  L  Y  A  E  E  N  G  L  F  F  M  E  T  S  A  K  T  A  A  N  V  N  D  I  F  Y  E  I   : A  K  R  L  P  T  A  Q  P  T  Q  N  P  A  G  M  V  L  E  N  R  P  A  E  G  S  R  T  A  S  C  C  T  *  K  S  S  S  L  I  N  S  L  N  L  S  *  S  L  S  R  V  H  L  F  F  H  A  V  L  V  P  M  N  M  K  S  G  S  G  S  G  M  V  H  M  E  *  N  M  *  K  R  R  K  R  F  L  *  K  F  P  *  *  R  Q  E  A  P  D  L  V  H  V  G  L  V  L  T  S  C  F  W  F  L  S  F  P  I  L  *  M  I  Q  P  L  P  L  H  F  H  L  M  K  S  E  L  C  Y  V  I  P  *  I  L  N  N  L  L  W  F  L  F  S  I  L  </first_frame>
            <second_frame>  R  H  A  C  M  Q  R  K  M  A  S  F  S  W  R  P  L  P  K  L  L  R  M  S  M  I  F  S  M  K  *  :  L  N  G  C  L  Q  L  N  P  L  K  I  Q  Q  E  W  F  L  K  T  D  Q  Q  K  D  L  E  L  H  H  V  V  L  E  N  H  H  L  S  *  I  H  *  T  F  P  N  P  C  L  E  F  T  C  S  F  M  L  C  L  Y  R  *  T  *  S  L  E  V  G  V  A  W  F  I  W  S  R  I  C  K  K  E  E  N  D  F  F  R  S  S  L  N  R  G  R  R  H  L  I  *  C  T  L  A  W  S  S  P  H  A  S  G  F  S  L  F  L  F  C  K  *  F  N  L  Y  L  F  I  S  T  *  *  S  P  N  S  V  M  L  F  L  E  S  *  I  T  C  F  G  F  F  L  A  Y  W </second_frame>
            <third_frame>   G  T  L  V  C  R  G  K  W  P  L  F  H  G  D  L  C  Q  N  C  C  E  C  Q  *  Y  F  L  *  N  S :   *  T  V  A  Y  S  S  T  H  S  K  S  S  R  N  G  S  *  K  Q  T  S  R  R  I  S  N  C  I  M  L  Y  L  K  I  I  I  S  H  K  F  I  E  P  F  L  I  L  V  *  S  S  L  V  L  S  C  C  A  C  T  D  E  H  E  V  W  K  W  E  W  H  G  S  Y  G  V  E  Y  V  K  K  K  K  T  I  S  L  E  V  P  L  I  E  A  G  G  T  *  F  S  A  R  W  L  G  P  H  L  M  L  L  V  S  L  F  S  Y  F  V  N  D  S  T  F  T  S  S  F  P  P  D  E  V  R  T  L  L  C  Y  S  L  N  L  E  *  P  A  L  V  S  F  *  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91733" stop="91640"/>
                    <exon start="90405" stop="90305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EARLYAEENGLFFMETSAKTAANVNDIFYEIAKRLPTAQPTQNPAGMVLENRPAEGSRTASCCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 186 chains have been computed
$ 
$ memory statistics:
$ 156072 bytes spliced alignments in total
$ 47 spliced alignments have been stored
$ 3320 bytes was the average size of a spliced alignment
$ 23760 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1584 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 215 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:19:02
-->
