<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:27:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT59-R" ref_strand="+" ref_description="CT59-R">
      <seq>cttttttttttttttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19931" stop="18805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19631" g_stop="19105" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="CT59-R" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="CT59-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19631" e_stop="19105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGA</genome_strand>
        <mrna_strand>CTTTTTTTTT-TTTTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT59-F" ref_strand="+" ref_description="CT59-F">
      <seq>cttttttttttttttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19931" stop="18818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19631" g_stop="19118" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="CT59-F" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="CT59-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19631" e_stop="19118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAG</genome_strand>
        <mrna_strand>CTTTTTTTTT-TTTTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g37460" ref_strand="+" ref_description="C2_At4g37460">
      <seq>ccatctgctggtgaggcctggaaacgcagagggcaagcccgtgctgctttaggtgaatctgttgaggcaattacagacttgaccaaagcgttggagtttgagccagactctgccgatatattacatgaaagaggaattgtcaattttaagtttaaagatttcaaaggtgctgtagaagacctctctacatgtgtaaagttcgataaggataacaaatctgcgtatacgtatttgggcttggccttatcctctctaggagaatatagaaaggctgaggaggcacataagaaagcaatccaaattgaaaggaatttcctcgaggcttgggctcatctagcacagttttatcaagacctagcaaattcagagaaggccttggaatgccttcatcagattttgcaaatagatgggaggtacgcgaaagcatatcacctgcgcgggctgctacttcatggaatgggagagcataggaatgctataaaagatttatcaatggggttggctattgatagcacaaacattgaatgcttgtatctacgagcttcttgctatcatgctattggattatataaagaagcagtgaaggactatgatgctgctttagatcttgaattagattctatggaaaagtttgtgcttcaatgcttggcgttctatcagaaagaaattgcattatacacagcgtcaaagatcaacagcgaattttcttggtttgatattgatggagatatcgatccccttttcaaggagtattggtgcaaaaggctgcacccaaaaaatgtttgcgaaaaggtctacaggcaacctcctttaaaagaatctttgaaaaagggaaagcaaagaaagcaagaatttactttcaccaagcaaaaaactgcccttctacaggctgcagattctatcggtaggaatatccagtatcattgccctggtttcttgcataataggcgccagcaccgcatggcaggattagctgctattgagatagcacaaaaagtctcaaaagcttggcgtgccttacaagctgaatggagaaactcaacgaaaggcacaggaaagtctgggaagagactcangagaagggaaaaactaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="41628" stop="34694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41328" g_stop="41263" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41262" i_stop="40628" i_length="635">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40627" g_stop="40561" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="133" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40560" i_stop="40242" i_length="319">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.792" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40241" g_stop="40141" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40140" i_stop="40008" i_length="133">
            <donor d_prob="0.137" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40007" g_stop="39900" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="342" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39899" i_stop="39281" i_length="619">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39280" g_stop="39210" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="413" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39209" i_stop="39066" i_length="144">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39065" g_stop="39009" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="470" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39008" i_stop="38880" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38879" g_stop="38771" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="579" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38770" i_stop="38666" i_length="105">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38665" g_stop="38585" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="660" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38584" i_stop="37799" i_length="786">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="37798" g_stop="37712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="747" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="37711" i_stop="36568" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36567" g_stop="36361" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="954" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36360" i_stop="35138" i_length="1223">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="35137" g_stop="34994" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="1098" r_length="144" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="C2_At4g37460" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1098</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g37460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41328" e_stop="41263"/>
          <exon e_start="40627" e_stop="40561"/>
          <exon e_start="40241" e_stop="40141"/>
          <exon e_start="40007" e_stop="39900"/>
          <exon e_start="39280" e_stop="39210"/>
          <exon e_start="39065" e_stop="39009"/>
          <exon e_start="38879" e_stop="38771"/>
          <exon e_start="38665" e_stop="38585"/>
          <exon e_start="37798" e_stop="37712"/>
          <exon e_start="36567" e_stop="36361"/>
          <exon e_start="35137" e_stop="34994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTGCTGGAGAGGCCTGGAAACGCAGAGGGCAAGCCCGTGCTGCTTTAGGTGAATCTGTTGAGGTATAAAATTCGTATTTGTCTATTTATTGAGCTATCTTTTGGCTTTTGTCTTCAGGGTATTCTTTTCTGCTATATTTATTTTTTTTCAAAGTCAACTTTCAATGATCTCTTCTGTGGATGTGATGTGCAGTGTAAATGATGTGGAATTACTGAATTTTATCACTTGTGCTATCAGATTTTGAAACCAAATTTTTCGTTAATAGCAATCAGACTCCAGTTAGACCACTAGGGATATTATCAAGAGGCACTTGGTTATTTTCCTTCAGATTGTGGTAGCTTACAGAGTTAATGATGGAAGATGAAATGTCTTTGGATGTTCTAACTAAGGCTTGAGCTATATCACAACTTATGAGCATCTTCCCGTGAAAGTTAAATTCTAAAATGGAATCAGGAGCATAACATTATTCAGCTGCATCCTTTTGATCATGGGAGTTTCTTGGTAGTCTAAGTCTAAAACATAATTTTAACATTCTGATGAGTTAGTTTTAGTTTTGTTTTGCTCCGATTATCCCATGGAGAGTGATATTAGTTACATTTAAACGCTTTTTACTTCCTAAAAATGTTGGTTTCACAGTAAAAGTAGTATGATTGATATTTGTGACTTGGTATATCTAAACAAAATGATTTTACACCAGGCAATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAGGTGACGAGACTGAACTCTTCCATTTACTATGAACAATTGGATTTATGCTGTTAAAGTAGATAGACATAAATAGCAAAACATACATTTTATGACAGATAGCTTTTGTGCATGTAATTTGAAACTAAGGTTCACTTTCATCTTTACAACACTGAGATTATTTATTGAGGCCCATAGGTGGTTTCATCTTGTAACTATTTTGCAATAAATGACCTCTAGCGGAATATTCCATAATTTCTTGAGATTTCAGAAAAGATCATTTGATTGGACAAAGTTTGTTCAATCTAACCTGGGAGTCACTAACTCTCCTTAATTAGTGCAGGAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTGGTGAGTCTATGACCTTGAGTCTACCAATTGTTGTAGAATGAGCTAAGAATGTTTATCCGCAAAAGTTTGAGAAATTTTTTGTTGGAAAAATACTGATATAATGCTGGTCGAAAAAAATTTGGAAAATTATCAGGGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAGGTATCTCTGAATATATGGTGAATACTCTTAATGCTATTTTTCCTGCCAAGTGGGATCCCAATACTTCTATTGGTAGTGCTGATGATATAGAGTTTCTTGATGATGAAGTTGCCTTTTGACTTCGAGAATTTTCTTATACCAAGTTCTTGTTTTTGTTTGTCTCTTTTTTCACCGGTATCTGGAACTCAAGGTTGAGGTAAATATATACTTCTGCATGCAAGTTAAGAAATTCAAGAATAAGGATTTAAATGGCAAGTAGACATTCTATTGCTTAACCAGTGATGAAGAGCCTAACTCTCTGTTATCAGATATTGTGTGAGCGTTCATCTTCTGGGGTGCAATGCACATGTATTGTAATAGCTTTTGCCTTGTTGCATTTTCAGATAAGGTCTCCTGATTAGCTGGTAGATGTTATTAATTTACATCATCAAATTGGATGTTTATGGAATATCTATTGCCATAAGTTTAAAATTCCTAAGACTCAGGAGCTGCTCTAACCTAGTTCTTGATTGGTTGAGTTTCTTCACTTATATTAAATGTGGCAAAACAATGAGATCTCTTTGAAGATATTTTTTTAATGATGTATTTGATTATTGAAGAATCTTTATCTTTGGTGCAGTTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAGGTGATTACTGAGGATCTCAATATTTACATCTTTTTCACCGATAAATATCTAATCTCGAGTATTTGAATGGTGAAGTATAAAACCTATCCTCAAATAGGAATATAACTGATAATCCATCCTCTATCTACCCTTTTTCGTTGGAAGGTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAGGTACATATTTCTGAAAAATTTTGCTGTCCTGAGTCTCCCCTTTCTCTCTTTTTTGTCAAATTTTCTATGTATAATCCTCTTTTAACGAAAAATGTAGCAGGCCTTAACTGCCTATATATGCTGTTACAGGAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCAGTATGGGCATTTTCAAACTCGTCTCTTGTGACTTTTGAGTATTCTTAAATATTTTAAGGTGGTTGTCTCCAATTTCAGATTATTGATTCTGAATTTATGCTGTAGGTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAGGTAAATAAGTATATGCCAGATTTCCGTCCATCGAGCTGGTTCAATGTTATGCCTCTACTAAGTATTGTTTTCTTTTGTGTTGCACTATTTTCTTTTTGCTTTCTAAGTTTTGGCATTTTCTAACTGTTAGCTTTTACCTTGCTGGAATGGTTCTCGATTCTCAAGTGGACAACTCATACTTCAAATTTTAGATTTGTCATTTCGGGTTGTTAGCCATTTTAGTAGTTGCAATTTTACATTTACTTAAGTTAGTAGTCAAAAATTTAGCAATTTTACATTTTCCCACAAATTGTCCAAACATTGGCTAAATTTCTGACCATCTTTTTGTTCCGTTAAGCCACTGTTGGACAGTTTGGGTCGAAGTGGCCGATGGTTAACAAAGCCAAGCTTGGCTTGGTTTAAGCTTGATTATGATTGCGTTTAGGTGTCCCGCATATTCAAACCTAGCACAAATGTCCCTACCAAAAGCTCGAGTTGACAGATGCTAGCTTGTGAGCCCAGTTAAGTTGGCAGTGTTCTTTTCACTTAACCATTACACATCCGGTAAAATAAGATTTTGCTACCCGGATCATTTAATAGTCCTATGGAAACTCTTTTCATTCTAGTTGTGTGCTCCTCCTCCTTCCTCATTCTTGTGAACAGCCTTCTGCTTCCTGCCTGTGACAATACAGGTGCAGCCATTATCATGAGACACCAATTGATCTCTCTATCTCTGTTATTTTTTGTCCAATTTCTATTTCAGTTTGAATAGCTTATGTTTTGCTTTTCAATATTTTTCCCTTGCAGAAAGAAATTGCATTATACACTGCATCAAAGATGAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAGGTAATGTCTAAAAAGAGAATATATTGCTTGGTTATTTTTTGATACACTCATTAAAAACAACACGGAATATTCTGGTAGCCTCTGTACCGCCTCTTTCTGAGAGAATTGGGAAAAGGAATGAAGTTTGAAGTTATAGCAAAAAGTACTATCTGGTGGGAATTACGCAGAACTTTGAAGGTTAGCAGAGAATTTGGAGAATGAATGAAGTTTAAAGAAATAAGGCCTCACTGATTCAATTTGAATTCGATTATAAGCTTACCTGAAGAATTTGACCGTGAAATCACTACAACTCTGTCAAAGTAATTGGACATTTTACCATATCTTTTAACATGCTCATACTCTATTATGTAGAGTTATCCCTTTTAGGCTTCAAAACCTTCTTTAGAGCCCCCATCATTTCCTTAACCCCCACTAAATGGTTGGAAAGTGATCTCTTCTCAACCAATAGTCTCATAAGATTGCTACAACAGTTTCATTGCTCAATTACTTTATCATGAGTAGAGTGGCAATGGATACAAGGACTATCTAGAAACGTAAAGGTTGCTTTCACTGAGTTGCTGCTGCAGACATTGCTTGCACTTTAAGTATGTGCTTTATTTGGTGCATATGTTCCTTCATAGTTAGTTGTCAATGTTCTTTTGCTGATCCATGTCGAATGGGTGTGCGGAGTCTGGAAAATACTAAACGTTCTGAAAAAGTCACAGGTACCCATATGGATAGGACAAAGTTACTGGTTCCAGTTAGGTAGATAATCAATGAAGGTACAACATGCATATACCAGTGATAGTTTTCTGGAATGATGTGTAGTCTCCAGTTCATAAACCTAACAGTGCTTTAATCACTTTTATGCACCTGGAGGGTCCAGGGTGATACCTTTACAAAGTGAACTGTCATGGGAAAACCTTTGATTTCAAATGATGGTTTCTTGACAGATATGTGGGATCATTTCATTAATTTTAGGGGCTAATAATCAGTTTTTGTAAATCTCGGATCTAAAGTGGTAGATACCTCTATGAAGTGAACTGTCATCTGAAAAGTGCTTTTGTTGGCAGTGAATTTCTTATCTCAAAGTTATTATTTCCATTGACTTCGTGTTCTTATACTTCGTTCTCAATTCCTACTTTTTTTTCCCTTCTGTTCTCAGGAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGGAAGCAAAGAAAGCAAGAATTTACTTTCACCAAGCAAAAAACTGCCCTTCTACAGGCTGCAGATTCTATCGGTAGAAATATCCAGTATCATTGTCCAGGTTTCTTGCATAATAGGCGCCAGGTAATTCTAAAAAGAGTTAAATATTAAGTTAACTTTGTTCTTTCTAAAAAAACCCAGAGCTCCACATTTTCCTTGAGAAACCTGATAGTGATTTCCTGTTGCTTTATTAGATGCCTTTTTATGCTTTGCTTTCACATTTCCTCTAATATAGACAATGAGAATATTGAAGGAAAAGAATATGAAAATGTTACCAGAACCTTTTGTTTGCATTAGTTGCCTTGTAATTGAGGGATTTGAACTGATATGCCGATTATAAGAGAAAGTTCTTGTACAAGAATGTTACCTTTATTTTCACACTCAACGTTTCCTCTCCAGCTTTCGCTGTACACACTCCTTGTTTTCCATCAATAGTTAGTTACTTTCCATGAAATATAAAAATTAAGGAATTCATCTCAAATTAGGTTATCGGAAAAAAAAGAAGAGAATCCATCTGTCAACAGAAGATTTTCACTATTTGTGGACTAGTGTTCTATCTTCTCTTAGCACAGAAAGTGAGATTTGGATCTTAAAGACAATAACAACAAACCCAGCGAAATCTCACTACATGGGCTCTGGGGATCTTAAGGACTGTTTAGCATTTTATATTCCACAATTATGAATGATAACTTTCTACACACACTGTTAAATAAGATTGAGGTGACTGCCAAGTGCCAAGGCTACATTTCTAGTGAAAATGTCTAAAATGAATAGCATGCAACTAATAATAATACTTATAGATGTGAATAATGATGTTAGACTAAGAATGCCAAGTTTTGATGGTCATCTAGTGCAAAAAGGGTTGGCGTCTTTAGTTTTGTGGAGACACTTATAGGAAGCAGTTGTCTTTCGCCCTTCAGCCTCTAATTCTGTAATATGTATGTTGTGGAGCAATTTCCGATGTTAACTGTGATGCTCTTTGTAGTTATTTCGTTGAGTTAGTTTGTGCAATGGTTGTAAACAGTAGTATTAGATTTGTGCCTTTCTAACTTGTGTTGCTTTTTCATGATCAAAATTTCTCTTTTCTTATCTAGTGAAGAGGATCTATTGTTCGTAGTGTATCTCTTAGACCTTATCATGACATTCTTTTCTTTTTGCAATTTAAAGATGATATAATATCTTTATTACAGATAGTGGATTCATAAATTATTGTTATGTACTAATATGCTGCTCTTTAGCTACAAACATGCTTGCCACAATGTTTTTATTCTTTCACCCAAATCTGAGAATTATTTTGCAATTATCAGCACCGCATGGCAGGATTAGCTGCTATTGAGATAGCACAAAAAGTCTCAAAAGCTTGGCGTGCCTTACAAGCTGAATGGAGAAACTCAACTAAAGGCACAGGGAAGTCTGGGAAGAGACTCAGGAGAAGGGAAAAACTAAATTCT</genome_strand>
        <mrna_strand>CCATCTGCTGGTGAGGCCTGGAAACGCAGAGGGCAAGCCCGTGCTGCTTTAGGTGAATCTGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTACAGACTTGACCAAAGCGTTGGAGTTTGAGCCAGACTCTGCCGATATATTACATGAAAGAG...............................................................................................................................................................................................................................................................................................................................GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTAGAAGACCTCTCTACATGTGTAAAGTTCGATAAGGATAACAAATCTGCGTATACGTATTTG.....................................................................................................................................GGCTTGGCCTTATCCTCTCTAGGAGAATATAGAAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCAAGACCTAGCAAATTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG................................................................................................................................................GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG.................................................................................................................................GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCACAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCA.........................................................................................................GTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAATTGCATTATACACAGCGTCAAAGATCAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGAAAGCAAAGAAAGCAAGAATTTACTTTCACCAAGCAAAAAACTGCCCTTCTACAGGCTGCAGATTCTATCGGTAGGAATATCCAGTATCATTGCCCTGGTTTCTTGCATAATAGGCGCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCATGGCAGGATTAGCTGCTATTGAGATAGCACAAAAAGTCTCAAAAGCTTGGCGTGCCTTACAAGCTGAATGGAGAAACTCAACGAAAGGCACAGGAAAGTCTGGGAAGAGACTCANGAGAAGGGAAAAACTAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0429" ref_strand="+" ref_description="T0429">
      <seq>aaaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47910" stop="45872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47610" g_stop="47352" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="369" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46172" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="407" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="T0429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="T0429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47610" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCT</genome_strand>
        <mrna_strand>AAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g67370" ref_strand="+" ref_description="C2_At5g67370">
      <seq>aattctccatcacgtatgatgcatggtcaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaacaaaagaaagagaatcatacccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85148" stop="88801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85448" g_stop="85772" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="478" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="556" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="652" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="688" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="870" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88500" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1195" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1196" polyA_stop="1231"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="C2_At5g67370" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g67370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85448" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</genome_strand>
        <mrna_strand>AATTCTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGAACAAAAGAAAGAGAATCATACCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0634" ref_strand="+" ref_description="T0634">
      <seq>cctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="86029" stop="88372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86329" g_stop="86410" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="256" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="292" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87917" g_stop="88072" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="448" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="T0634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="T0634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86329" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACA</genome_strand>
        <mrna_strand>CCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g23093" ref_strand="+" ref_description="C2_At2g23093">
      <seq>gagaagtttccttttactctattcgctttcttcagtaatggaaggcttgttggcagtatttggagagtacgacttggcgttccatggcattagtagggagcagatggtcatctctctatgtattggatacacaactgctctctttgtcggtacctttttgggcatgctctcggatttgattggccagagaaaagtcagcttgttattttgcttgctgcatctttttgttgccatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggatggttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggttaatgacttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaaggaagatccaaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggtttggcttttgtcatggacccaagctaccatccacttctcaattgcagtttttttggattacttgggctccaaccattgtggcagatgggagagaggttttactaggttttggtatacccatgtgtacttggtgcgaaaatgcttggaagcactgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="111798" stop="107069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111498" g_stop="111464" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111463" i_stop="110630" i_length="834">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110629" g_stop="110485" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="180" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110484" i_stop="110019" i_length="466">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110018" g_stop="109850" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="349" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109849" i_stop="109303" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109302" g_stop="109044" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109043" i_stop="108164" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108163" g_stop="108075" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="698" r_length="90" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108074" i_stop="107447" i_length="628">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107446" g_stop="107369" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="777" r_length="79" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="C2_At2g23093" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g23093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111498" e_stop="111464"/>
          <exon e_start="110629" e_stop="110485"/>
          <exon e_start="110018" e_stop="109850"/>
          <exon e_start="109302" e_stop="109044"/>
          <exon e_start="108163" e_stop="108075"/>
          <exon e_start="107446" e_stop="107369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAGGTGACGTTATTTTCCGAGTTGTTTTTTTCTTCCCACTGAATGTAGTATTAGGAAATGTCGCGTTCTAATTAACTCCTAGAGTCTACTTGCTGCTAAAATTGGTGCGAGGTAGTGAACTTTACGTGTTTCCCTGTTTATTAACTGCTGGATTTCCTCTGTTACAAATGTTTGATATTTACCCTCTATTTTGCCAAAAGAGAAAAATGAAACTTCTAGCAGGTTCTGGATTTCATAATTTTAACTTAAAGAAATGAATTAAACTAGTCTGACTTAGTTCTGAAAATGGTCAAGTTGACGTCTCAAACTAATTGGATAGATGGACTATCTCTTAATTTGTATGTTGCTACATTGAGCATTTTATCAAGTTAGATATTTTTTTCATTTGTGGAACACTCAGGTTCACAAAAGTGGATTATCCTGTTGTTATAGTAGAGTAATAAACATCTATACAAATTTGGATCAATCAAATTCAAAAGTTTATTCAAGACTCAATGAAGTTATTCTAACATATGATATTAAAATGTTGATACGGGAACTTTACATTGAATGTGGAGTGTGAATTGATATACTGATACAAGTTGCTCCCGTATAATCTGTTTATTAGCATATTATGATAAGGCTGAGCTGACACCACAAAGTTGTCAATTATTATTTTAACTTGATAGAGATATCGTAGTTACTGATCATAGAACACATGTTAAGGTGTACGCGAAATCACATATTCCATAAAAAAAGTCACGCTTCCCTTTTTATTACATCCTCGATATATAAGTTTGTCCTTTTTATGATTGCTTGGATTCAAAATCGTTATTTATTTAATTTAACTTTTTACAGTAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCCTTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAG-TTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGG-TTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</genome_strand>
        <mrna_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTGGCGTTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTATTGGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGCATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTCTCAATTGCAGTTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGAGAGGTTTTACTAGGTTTTGGTATACCCATGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="19631" PGL_stop="19105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19631" e_stop="19105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="19631" e_stop="19105" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19631" stop="19105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT59-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19631" stop="19118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT59-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGA</gDNA_template>
            <first_frame> L  F  F  S  I  F  G  L  Y  F  L  L  A  T  M  D  R  K  F  V  F  L  V  S  I  L  C  I  V  V  A  S  V  T  G  Q  T  P  A  A  A  P  V  G  A  K  A  G  T  T  P  P  A  A  A  P  T  K  P  K  T  P  A  P  A  T  A  P  A  S  A  P  P  T  A  V  P  V  A  P  V  T  A  P  V  T  A  P  T  T  P  V  V  A  A  P  V  S  A  P  A  S  S  P  P  L  K  A  P  A  S  S  P  P  V  Q  S  P  P  A  P  A  P  E  V  A  T  P  P  A  V  S  T  P  P  A  A  A  P  V  A  A  P  V  A  S  E  T  T  P  A  P  A  P  S  K  G  K  V  K  G  K  K  G  K  K  H  N  A  S  P  A  P  S  P   </first_frame>
            <second_frame>  S  F  S  L  F  L  V  Y  I  F  F  *  L  P  W  I  E  N  L  Y  F  *  Y  Q  F  C  A  L  *  W  Q  V  S  R  V  R  H  L  P  Q  H  P  L  V  L  R  L  V  L  L  H  Q  L  L  H  Q  L  S  R  K  L  L  L  P  Q  Q  H  Q  P  R  P  H  L  Q  L  F  L  L  L  Q  *  P  L  Q  L  L  L  P  L  H  L  L  L  L  H  P  Y  Q  H  Q  Q  V  L  H  H  L  K  H  Q  Q  V  L  H  Q  Y  N  L  H  Q  L  Q  L  Q  R  *  L  H  R  Q  L  F  L  L  H  R  L  Q  L  Q  L  L  H  L  L  L  R  R  Q  L  Q  L  R  L  L  A  K  E  K  *  R  E  R  R  E  R  N  T  M  H  H  Q  H  L  L  P  </second_frame>
            <third_frame>   L  F  L  Y  F  W  S  I  F  S  F  S  Y  H  G  *  K  I  C  I  S  S  I  N  F  V  H  C  S  G  K  C  H  G  S  D  T  C  R  S  T  R  W  C  *  G  W  Y  Y  S  T  S  C  C  T  N  *  A  E  N  S  C  S  R  N  S  T  S  L  G  P  T  Y  S  C  S  C  C  S  S  N  R  S  S  Y  C  S  H  Y  T  C  C  C  C  T  R  I  S  T  S  K  F  S  T  T  *  S  T  S  K  F  S  T  S  T  I  S  T  S  S  S  S  R  G  S  Y  T  A  S  C  F  Y  S  T  G  C  S  S  S  C  C  T  C  C  F  G  D  N  S  S  S  G  S  *  Q  R  K  S  K  G  K  E  G  K  E  T  Q  C  I  T  S  T  F  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19631" stop="19107"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFFSIFGLYFLLATMDRKFVFLVSILCIVVASVTGQTPAAAPVGAKAGTTPPAAAPTKPKTPAPATAPASAPPTAVPVAPVTAPVTAPTTPVVAAPVSAPASSPPLKAPASSPPVQSPPAPAPEVATPPAVSTPPAAAPVAAPVASETTPAPAPSKGKVKGKKGKKHNASPAPSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="41328" PGL_stop="34994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41328" e_stop="41263"/>
            <exon e_start="40627" e_stop="40561"/>
            <exon e_start="40241" e_stop="40141"/>
            <exon e_start="40007" e_stop="39900"/>
            <exon e_start="39280" e_stop="39210"/>
            <exon e_start="39065" e_stop="39009"/>
            <exon e_start="38879" e_stop="38771"/>
            <exon e_start="38665" e_stop="38585"/>
            <exon e_start="37798" e_stop="37712"/>
            <exon e_start="36567" e_stop="36361"/>
            <exon e_start="35137" e_stop="34994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.985"/>
          <exon-intron don_prob="0.956" acc_prob="0.792" e_score="0.985"/>
          <exon-intron don_prob="0.137" acc_prob="0.936" e_score="0.960"/>
          <exon-intron don_prob="0.836" acc_prob="0.999" e_score="0.963"/>
          <exon-intron don_prob="0.966" acc_prob="0.958" e_score="0.986"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.501" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.890" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.966"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="0.981"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="41328" e_stop="41263" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41262" i_stop="40628" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="40627" e_stop="40561" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.792">
            <gDNA_intron_boundary i_start="40560" i_stop="40242" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="40241" e_stop="40141" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.137" acc_prob="0.936">
            <gDNA_intron_boundary i_start="40140" i_stop="40008" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="40007" e_stop="39900" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.836" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39899" i_stop="39281" i_length="619"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="39280" e_stop="39210" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.958">
            <gDNA_intron_boundary i_start="39209" i_stop="39066" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39065" e_stop="39009" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39008" i_stop="38880" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="38879" e_stop="38771" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.501" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38770" i_stop="38666" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38665" e_stop="38585" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.890" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38584" i_stop="37799" i_length="786"/>
          </intron>
          <exon e_serial="9" e_score="0.966">
            <gDNA_exon_boundary e_start="37798" e_stop="37712" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37711" i_stop="36568" i_length="1144"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="36567" e_stop="36361" e_length="207"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36360" i_stop="35138" i_length="1223"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="35137" e_stop="34994" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41328" stop="41263"/>
              <exon start="40627" stop="40561"/>
              <exon start="40241" stop="40141"/>
              <exon start="40007" stop="39900"/>
              <exon start="39280" stop="39210"/>
              <exon start="39065" stop="39009"/>
              <exon start="38879" stop="38771"/>
              <exon start="38665" stop="38585"/>
              <exon start="37798" stop="37712"/>
              <exon start="36567" stop="36361"/>
              <exon start="35137" stop="34994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g37460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATCTGCTGGAGAGGCCTGGAAACGCAGAGGGCAAGCCCGTGCTGCTTTAGGTGAATCTGTTGAG : GCAATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAG : GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTG : GGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG : TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG : GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG : GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCA : GTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAG : AAAGAAATTGCATTATACACTGCATCAAAGATGAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAG : GAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGGAAGCAAAGAAAGCAAGAATTTACTTTCACCAAGCAAAAAACTGCCCTTCTACAGGCTGCAGATTCTATCGGTAGAAATATCCAGTATCATTGTCCAGGTTTCTTGCATAATAGGCGCCAG : CACCGCATGGCAGGATTAGCTGCTATTGAGATAGCACAAAAAGTCTCAAAAGCTTGGCGTGCCTTACAAGCTGAATGGAGAAACTCAACTAAAGGCACAGGGAAGTCTGGGAAGAGACTCAGGAGAAGGGAAAAACTAAATTCT</gDNA_template>
            <first_frame> P  S  A  G  E  A  W  K  R  R  G  Q  A  R  A  A  L  G  E  S  V  E  :  A  I  T  D  L  T  K  A  L  E  F  E  P  D  S  A  D  I  L  H  E  R   : G  I  V  N  F  K  F  K  D  F  K  G  A  V  E  D  L  S  T  C  V  K  S  D  K  D  N  K  S  A  Y  T  Y  L  :  G  L  A  L  Y  S  L  G  E  Y  R  K  A  E  E  A  H  K  K  A  I  Q  I  E  R  N  F  L  E  A  W  A  H  L  A  Q  :  F  Y  Q  D  L  A  N  S  E  K  A  L  E  C  L  H  Q  I  L  Q  I  D  G  R :   Y  A  K  A  Y  H  L  R  G  L  L  L  H  G  M  G  E  H  R :   N  A  I  K  D  L  S  M  G  L  A  I  D  S  A  N  I  E  C  L  Y  L  R  A  S  C  Y  H  A  I  G  L  Y  K  E  A  :  V  K  D  Y  D  A  A  L  D  L  E  L  D  S  M  E  K  F  V  L  Q  C  L  A  F  Y  Q  :  K  E  I  A  L  Y  T  A  S  K  M  N  S  E  F  S  W  F  D  I  D  G  D  I  D  P  L  F  K  :  E  Y  W  C  K  R  L  H  P  K  N  V  C  E  K  V  Y  R  Q  P  P  L  K  E  S  L  K  K  G  K  Q  R  K  Q  E  F  T  F  T  K  Q  K  T  A  L  L  Q  A  A  D  S  I  G  R  N  I  Q  Y  H  C  P  G  F  L  H  N  R  R  Q  :  H  R  M  A  G  L  A  A  I  E  I  A  Q  K  V  S  K  A  W  R  A  L  Q  A  E  W  R  N  S  T  K  G  T  G  K  S  G  K  R  L  R  R  R  E  K  L  N  S </first_frame>
            <second_frame>  H  L  L  E  R  P  G  N  A  E  G  K  P  V  L  L  *  V  N  L  L  R :   Q  L  Q  T  *  P  K  R  W  N  L  S  Q  T  L  P  I  Y  Y  M  K  E  :  E  L  S  I  L  S  L  K  I  S  K  V  L  L  K  T  S  L  H  V  *  S  P  I  R  I  I  N  L  R  I  H  I  W :   V  W  R  Y  T  L  *  E  N  I  G  R  L  R  R  H  I  R  K  Q  S  K  L  K  G  I  S  S  R  L  G  L  I  *  H  S :   F  I  K  T  *  Q  T  Q  R  R  P  W  N  A  F  I  R  F  C  K  *  M  G   : G  T  R  K  H  I  T  C  A  G  C  Y  F  M  E  W  E  S  I   : G  M  L  *  K  I  Y  Q  W  G  W  L  L  I  A  Q  T  L  N  A  C  I  Y  E  L  L  A  I  M  L  L  D  Y  I  K  K  Q :   *  R  T  M  M  L  L  *  I  L  N  *  I  L  W  K  S  L  C  F  N  A  W  R  S  I  R :   K  K  L  H  Y  T  L  H  Q  R  *  T  A  N  F  L  G  L  I  L  M  E  I  S  I  P  F  S  R :   S  I  G  A  K  G  C  T  Q  K  M  F  A  K  R  S  T  G  N  L  L  *  K  N  L  *  K  R  G  S  K  E  S  K  N  L  L  S  P  S  K  K  L  P  F  Y  R  L  Q  I  L  S  V  E  I  S  S  I  I  V  Q  V  S  C  I  I  G  A  S :   T  A  W  Q  D  *  L  L  L  R  *  H  K  K  S  Q  K  L  G  V  P  Y  K  L  N  G  E  T  Q  L  K  A  Q  G  S  L  G  R  D  S  G  E  G  K  N  *  I   </second_frame>
            <third_frame>   I  C  W  R  G  L  E  T  Q  R  A  S  P  C  C  F  R  *  I  C  *   : G  N  Y  R  L  D  Q  S  V  G  I  *  A  R  L  C  R  Y  I  T  *  K  R :   N  C  Q  F  *  V  *  R  F  Q  R  C  C  *  R  P  L  Y  M  C  K  V  R  *  G  *  *  I  C  V  Y  I  F   : G  F  G  V  I  L  S  R  R  I  *  E  G  *  G  G  T  *  E  S  N  P  N  *  K  E  F  P  R  G  L  G  S  S  S  T   : V  L  S  R  P  S  K  L  R  E  G  L  G  M  P  S  S  D  F  A  N  R  W  E  :  V  R  E  S  I  S  P  A  R  A  A  T  S  W  N  G  R  A  *  :  E  C  Y  K  R  F  I  N  G  V  G  Y  *  *  R  K  H  *  M  L  V  S  T  S  F  L  L  S  C  Y  W  I  I  *  R  S   : S  E  G  L  *  C  C  F  R  S  *  I  R  F  Y  G  K  V  C  A  S  M  L  G  V  L  S   : E  R  N  C  I  I  H  C  I  K  D  E  Q  R  I  F  L  V  *  Y  *  W  R  Y  R  S  P  F  Q   : G  V  L  V  Q  K  A  A  P  K  K  C  L  R  K  G  L  Q  A  T  S  F  K  R  I  F  E  K  G  E  A  K  K  A  R  I  Y  F  H  Q  A  K  N  C  P  S  T  G  C  R  F  Y  R  *  K  Y  P  V  S  L  S  R  F  L  A  *  *  A  P   : A  P  H  G  R  I  S  C  Y  *  D  S  T  K  S  L  K  S  L  A  C  L  T  S  *  M  E  K  L  N  *  R  H  R  E  V  W  E  E  T  Q  E  K  G  K  T  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41328" stop="41263"/>
                    <exon start="40627" stop="40561"/>
                    <exon start="40241" stop="40141"/>
                    <exon start="40007" stop="39900"/>
                    <exon start="39280" stop="39210"/>
                    <exon start="39065" stop="39009"/>
                    <exon start="38879" stop="38771"/>
                    <exon start="38665" stop="38585"/>
                    <exon start="37798" stop="37712"/>
                    <exon start="36567" stop="36361"/>
                    <exon start="35137" stop="34994"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSAGEAWKRRGQARAALGESVEAITDLTKALEFEPDSADILHERGIVNFKFKDFKGAVEDLSTCVKSDKDNKSAYTYLGLALYSLGEYRKAEEAHKKAIQIERNFLEAWAHLAQFYQDLANSEKALECLHQILQIDGRYAKAYHLRGLLLHGMGEHRNAIKDLSMGLAIDSANIECLYLRASCYHAIGLYKEAVKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKMNSEFSWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLKESLKKGKQRKQEFTFTKQKTALLQAADSIGRNIQYHCPGFLHNRRQHRMAGLAAIEIAQKVSKAWRALQAEWRNSTKGTGKSGKRLRRREKLNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="47610" PGL_stop="46172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47610" e_stop="47352"/>
            <exon e_start="47235" e_stop="47126"/>
            <exon e_start="46209" e_stop="46172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47610" e_stop="47352" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47235" e_stop="47126" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46209" e_stop="46172" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47610" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG : CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG : GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCT</gDNA_template>
            <first_frame> K  K  K  K  K  K  N  S  F  T  A  A  R  S  E  V  Q  K  L  T  T  Q  L  K  G  K  K  N  K  K  S  I  A  S  I  E  L  L  P  I  H  L  S  R  R  R  W  R  R  K  L  L  I  G  L  N  *  L  S  F  V  A  L  R  S  G  R  K  Q  F  E  F  S  I  L  F  L  L  K  L  A  S  F  K  I  S   : A  T  E  R  F  A  I  V  N  W  S  F  T  S  M  L  L  R  I  V  I  R  H  F  S  S  I  L  S  F  F  K  L  I  Y  S  K  :  D  V  H  Y  L  L  L  V  R  K  R  K   </first_frame>
            <second_frame>  K  R  K  K  R  K  T  V  L  Q  P  Q  D  Q  K  F  R  S  S  Q  H  N  *  K  E  K  K  I  K  N  Q  S  H  Q  L  S  C  F  R  S  T  *  A  A  G  D  G  V  E  S  Y  *  *  D  *  T  S  *  A  L  *  L  *  G  V  V  E  S  N  S  N  S  R  F  S  S  C  S  N  L  R  H  S  R  Y  L  :  Q  P  S  V  L  L  *  S  I  G  A  S  Q  A  C  Y  *  G  L  *  *  G  T  S  A  R  S  *  A  S  S  S  L  Y  I  Q  R :   T  C  I  I  C  S  W  *  E  R  G  S  </second_frame>
            <third_frame>   K  E  K  K  E  K  Q  F  Y  S  R  K  I  R  S  S  E  A  H  N  T  T  E  R  K  K  K  *  K  I  N  R  I  N  *  A  A  S  D  P  L  E  P  P  A  M  A  S  K  V  T  D  R  I  E  L  A  K  L  C  S  S  K  E  W  S  K  A  I  R  I  L  D  S  L  L  A  Q  T  C  V  I  Q  D  I  C :   N  R  A  F  C  Y  S  Q  L  E  L  H  K  H  V  I  K  D  C  D  K  A  L  Q  L  D  P  K  L  L  Q  A  Y  I  F  K   : G  R  A  L  S  A  L  G  K  K  E  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47503" stop="47352"/>
                    <exon start="47235" stop="47126"/>
                    <exon start="46209" stop="46172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AASDPLEPPAMASKVTDRIELAKLCSSKEWSKAIRILDSLLAQTCVIQDICNRAFCYSQLELHKHVIKDCDKALQLDPKLLQAYIFKGRALSALGKKEEA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47439" stop="47352"/>
                    <exon start="47235" stop="47126"/>
                    <exon start="46209" stop="46174"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFVALRSGRKQFEFSILFLLKLASFKISATERFAIVNWSFTSMLLRIVIRHFSSILSFFKLIYSKDVHYLLLVRKRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="85448" PGL_stop="88500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85448" e_stop="85772"/>
            <exon e_start="86258" e_stop="86410"/>
            <exon e_start="86587" e_stop="86664"/>
            <exon e_start="86833" e_stop="86928"/>
            <exon e_start="87768" e_stop="87803"/>
            <exon e_start="87917" e_stop="88098"/>
            <exon e_start="88176" e_stop="88500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.115" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="85448" e_stop="85772" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.115">
            <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86258" e_stop="86410" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.849">
            <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86587" e_stop="86664" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.341">
            <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86833" e_stop="86928" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87768" e_stop="87803" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.334">
            <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87917" e_stop="88098" e_length="182"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="88176" e_stop="88500" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85448" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g67370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86329" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG : GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG : GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG : GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG : ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG : GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG : GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</gDNA_template>
            <first_frame> N  F  P  S  R  M  M  H  G  Q  K  K  K  R  T  S  I  *  L  L  F  L  L  N  S  M  V  A  R  K  F  T  N  A  K  A  K  F  I  W  L  H  S  F  *  S  D  R  S  Q  Q  K  L  P  L  V  D  H  F  I  E  Q  S  N  D  C  M  S  E  E  H  S  S  *  S  P  E  R  W  D  E  R  W  H  E  W  Q  W  I  R  W  S  *  L  G  P  R  L  G  N  *  G  A  I  *  T  K  A   : G  E  *  V  L  I  S  E  R  *  N  F  I  L  L  G  R  T  G  S  R  G  L  L  P  T  S  R  G  T  L  V  S  H  F  R  S  F  G  S  T  Y  C  C  C  K  L  Q  S  F  K   : G  S  F  K  I  S  P  G  C  K  Y  G  D  S  F  S  C  C  T  D  C  P  K  N  L  S   : G  M  E  L  C  W  R  *  A  F  I  S  S  Y  T  L  *  R  D  W  M  V  *  W  A  D  V  G  E  A  P  R   : D  L  S  S  G  *  A  V  G  I  L  *   : G  E  T  S  H  *  N  A  E  A  N  A  S  W  N  R  G  F  A  C  C  S  S  L  I  I  H  I  C  N  T  S  R  R  F  F  P  Q  Y  F  H  N  K  R  E  L  I  E  F  H  L  N  K  Q  H  K  *  T  R  H  Q  :  E  R  R  T  V  A  L  A  T  G  S  Q  G  G  R  *  S  S  K  S  C  R  *  S  S  *  W  K  A  S  L  L  Q  R  *  V  L  S  C  I  G  R  W  T  V  L  Q  M  G  R  L  S  *  I  R  G  Y  I  *  V  K  K  A  T  V  K  F  C  D  C  S  K  D  L  Y  N  *  A  S  S  Y  N  F  N  E  E  I  L  M  F  Y  A  L  D  N  A  H  A  K  N  K  R  K  R  I  I  T  Q  </first_frame>
            <second_frame>  I  F  H  H  V  *  C  M  V  K  K  K  K  E  L  L  S  S  Y  F  F  F  *  I  L  W  L  Q  E  N  S  Q  M  L  R  L  N  L  Y  G  S  I  V  S  S  P  I  E  V  N  K  S  C  R  S  W  I  I  L  S  N  K  A  T  I  V  C  R  R  N  I  R  V  K  A  L  K  D  G  M  N  G  G  T  N  G  S  G  L  G  G  R  S  W  D  P  G  L  E  I  E  V  P  F  E  Q  R  P  :  V  N  E  Y  S  S  L  K  D  E  T  L  Y  S  W  A  E  L  G  P  G  A  F  F  L  R  L  G  G  L  W  L  V  T  F  A  V  L  G  V  P  I  A  A  A  S  F  N  P  S  K  :  D  P  L  R  F  L  L  A  A  S  T  G  T  L  F  L  V  A  L  I  V  L  R  I  Y  L  :  G  W  S  Y  V  G  D  R  L  L  S  A  V  I  P  Y  E  E  T  G  W  Y  D  G  Q  M  W  V  K  P  P  E  :  I  L  A  R  D  R  L  L  G  S  Y  K  :  V  K  P  V  I  K  M  L  K  Q  T  L  V  G  T  G  A  L  L  V  A  A  V  S  L  F  I  F  A  T  P  V  E  D  F  F  R  N  T  F  T  T  N  E  N  S  L  S  S  T  S  T  N  S  T  N  K  L  G  I  R :   K  E  E  L  L  R  L  P  L  E  V  K  E  D  D  D  L  A  K  A  A  A  E  A  A  D  G  R  P  V  Y  C  R  D  R  Y  Y  R  A  L  A  G  G  Q  Y  C  K  W  E  D  L  V  K  *  E  D  I  Y  K  *  R  K  L  Q  L  N  S  V  I  A  Q  K  I  C  T  I  E  P  L  L  I  I  L  T  K  K  F  *  C  F  M  H  *  I  M  R  M  Q  R  T  K  E  R  E  S  *  P  K </second_frame>
            <third_frame>   F  S  I  T  Y  D  A  W  S  K  K  K  K  N  F  Y  L  A  T  F  S  S  E  F  Y  G  C  K  K  I  H  K  C  *  G  *  I  Y  M  A  P  *  F  L  V  R  *  K  S  T  K  A  A  A  R  G  S  F  Y  R  T  K  Q  R  L  Y  V  G  G  T  F  E  L  K  P  *  K  M  G  *  T  V  A  R  M  A  V  D  *  V  V  V  V  G  T  Q  A  W  K  L  R  C  H  L  N  K  G  R :   *  M  S  T  H  L  *  K  M  K  L  Y  T  L  G  Q  N  W  V  Q  G  P  S  S  Y  V  S  G  D  F  G  *  S  L  S  Q  F  W  E  Y  L  L  L  L  Q  A  S  I  L  Q  R :   I  L  *  D  F  S  W  L  Q  V  R  G  L  F  F  L  L  H  *  L  S  *  E  F  I  W :   D  G  A  M  L  E  I  G  F  Y  Q  Q  L  Y  L  M  K  R  L  D  G  M  M  G  R  C  G  *  S  P  Q  R :   S  *  L  G  I  G  C  W  D  L  I  R :   *  N  Q  S  L  K  C  *  S  K  R  *  L  E  Q  G  L  C  L  L  Q  Q  S  H  Y  S  Y  L  Q  H  Q  *  K  I  F  S  A  I  L  S  Q  Q  T  R  T  H  *  V  P  P  Q  Q  T  A  Q  I  N  *  A  S   : G  K  K  N  C  C  A  C  H  W  K  S  R  R  T  M  I  *  Q  K  L  P  L  K  Q  L  M  E  G  Q  F  T  A  E  I  G  I  I  V  H  W  P  V  D  S  T  A  N  G  K  T  *  L  N  K  R  I  Y  I  S  E  E  S  Y  S  *  I  L  *  L  L  K  R  S  V  Q  L  S  L  F  L  *  F  *  R  R  N  F  D  V  L  C  I  R  *  C  A  C  K  E  Q  K  K  E  N  H  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85518" stop="85772"/>
                    <exon start="86258" stop="86410"/>
                    <exon start="86587" stop="86664"/>
                    <exon start="86833" stop="86928"/>
                    <exon start="87768" stop="87803"/>
                    <exon start="87917" stop="88098"/>
                    <exon start="88176" stop="88338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILWLQENSQMLRLNLYGSIVSSPIEVNKSCRSWIILSNKATIVCRRNIRVKALKDGMNGGTNGSGLGGRSWDPGLEIEVPFEQRPVNEYSSLKDETLYSWAELGPGAFFLRLGGLWLVTFAVLGVPIAAASFNPSKDPLRFLLAASTGTLFLVALIVLRIYLGWSYVGDRLLSAVIPYEETGWYDGQMWVKPPEILARDRLLGSYKVKPVIKMLKQTLVGTGALLVAAVSLFIFATPVEDFFRNTFTTNENSLSSTSTNSTNKLGIRKEELLRLPLEVKEDDDLAKAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="111498" PGL_stop="107369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111498" e_stop="111464"/>
            <exon e_start="110629" e_stop="110485"/>
            <exon e_start="110018" e_stop="109850"/>
            <exon e_start="109302" e_stop="109044"/>
            <exon e_start="108163" e_stop="108075"/>
            <exon e_start="107446" e_stop="107369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.959"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.966"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111498" e_stop="111464" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="111463" i_stop="110630" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="110629" e_stop="110485" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="110484" i_stop="110019" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="110018" e_stop="109850" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="109849" i_stop="109303" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="109302" e_stop="109044" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109043" i_stop="108164" i_length="880"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="108163" e_stop="108075" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108074" i_stop="107447" i_length="628"/>
          </intron>
          <exon e_serial="6" e_score="0.923">
            <gDNA_exon_boundary e_start="107446" e_stop="107369" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111498" stop="111464"/>
              <exon start="110629" stop="110485"/>
              <exon start="110018" stop="109850"/>
              <exon start="109302" stop="109044"/>
              <exon start="108163" stop="108075"/>
              <exon start="107446" stop="107369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g23093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG : TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG : GCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</gDNA_template>
            <first_frame> E  K  F  P  F  T  L  F  A  F  F  S :   N  G  R  L  V  G  S  I  W  R  V  R  L  S  I  P  W  H  *  *  G  A  D  G  H  L  S  M  C  W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C   : G  R  W  E  R  G  F  A  R  F  S  I  P  L  C  T  W  C  E  N  A  W  K  H  C  I  </first_frame>
            <second_frame>  R  S  F  L  L  L  Y  S  L  S  S   : V  M  E  G  L  L  A  V  F  G  E  Y  D  L  A  F  H  G  I  S  R  E  Q  M  V  I  S  L  C  V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  :  A  D  G  R  G  V  L  L  G  L  V  Y  P  C  V  L  G  A  K  M  L  G  S  T  A  F </second_frame>
            <third_frame>   E  V  S  F  Y  S  I  R  F  L  Q  :  *  W  K  A  C  W  Q  Y  L  E  S  T  T  *  H  S  M  A  L  V  G  S  R  W  S  S  L  Y  V  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W :   Q  M  G  E  G  F  C  *  V  *  Y  T  P  V  Y  L  V  R  K  C  L  E  A  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111497" stop="111464"/>
                    <exon start="110629" stop="110485"/>
                    <exon start="110018" stop="109850"/>
                    <exon start="109302" stop="109044"/>
                    <exon start="108163" stop="108075"/>
                    <exon start="107446" stop="107369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFLLLYSLSSVMEGLLAVFGEYDLAFHGISREQMVISLCVGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVADGRGVLLGLVYPCVLGAKMLGSTAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 123 chains have been computed
$ 
$ memory statistics:
$ 15880 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2268 bytes was the average size of a spliced alignment
$ 10968 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2193 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 124 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:27:29
-->
