<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:21:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318994" ref_strand="+" ref_description="SGN-E318994 [cTOB-14-F8]">
      <seq>agaattcgataaaattacaaacttccatatatgtcatcaaaaaataaataatgcgtaatctctacgaaagcttcaacagtacgtcaactcatttcttttcaaaataatgccccttgagttacacctcaattaatacacccaggtaggaggcaaaattgcagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggtaagccccttttgattgtcgattatttcatctaaaaactttcatcgaatttgttgaaatgttacaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatcctggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6364" stop="7534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="7074" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7150" g_stop="7234" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="496" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E318994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="7074"/>
          <exon e_start="7150" e_stop="7234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCGATAAAATTACAAACTTCCATATATGTCATCAAAAAATAAATAATGCGTAATCTCTACGAAAGCTTCAACAGTACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAG</genome_strand>
        <mrna_strand>AGAATTCGATAAAATTACAAACTTCCATATATGTCATCAAAAAATAAATAATGCGTAATCTCTACGAAAGCTTCAACAGTACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC...........................................................................TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392500" ref_strand="+" ref_description="SGN-E392500 [TUS-36-B3]">
      <seq>tttttcaactcatttcttttcaaaataatgccccttgagttacacctcaattaatacacccaggtaggaggcaaaattgcagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatcctggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgagaagagaaacggacagattgatatcgaaagcaagtgcttctttgacatacggaacaggggaggaagatgatttggaatcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6447" stop="7615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6743" g_stop="6937" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6938" i_stop="7004" i_length="67">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7005" g_stop="7074" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="265" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7150" g_stop="7315" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="431" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E392500" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6743" e_stop="6937"/>
          <exon e_start="7005" e_stop="7074"/>
          <exon e_start="7150" e_stop="7315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGG</genome_strand>
        <mrna_strand>TTTTTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAG...................................................................GAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC...........................................................................TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACAGGGGAGGAAGATGATTTGGAATCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235601" ref_strand="+" ref_description="SGN-E235601 [cLED-15-A23]">
      <seq>acgtcaactcatttcttttcaaaataatgccccttgagttacacctcaattaatacacccaggtaggaggcaaaattgcagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatcctggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgagaagagaaacggacagattgatatcgaaagcaagtgcttctttgacatacggaacatgtgatgaagatgatttggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6444" stop="7612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6744" g_stop="6937" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6938" i_stop="7004" i_length="67">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7005" g_stop="7074" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="264" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7150" g_stop="7312" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="427" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E235601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6744" e_stop="6937"/>
          <exon e_start="7005" e_stop="7074"/>
          <exon e_start="7150" e_stop="7312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATC</genome_strand>
        <mrna_strand>ACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAG...................................................................GAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC...........................................................................TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238452" ref_strand="+" ref_description="SGN-E238452 [cLED-17-N18]">
      <seq>acgtcaactcatttcttttcaaaataatgccccttgagttacacctcaattaatacacccaggtaggaggcaaaattgcagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatcctggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgagaagagaaacggacagattgatatcgaaagcaagtgcttctttgacatacggaacatgtgatgaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6444" stop="7604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6744" g_stop="6937" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6938" i_stop="7004" i_length="67">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7005" g_stop="7074" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="264" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7150" g_stop="7304" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="419" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E238452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6744" e_stop="6937"/>
          <exon e_start="7005" e_stop="7074"/>
          <exon e_start="7150" e_stop="7304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGAT</genome_strand>
        <mrna_strand>ACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAG...................................................................GAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC...........................................................................TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721953" ref_strand="+" ref_description="SGN-E721953 [FC15DB03]">
      <seq>aatcggccgaatttgagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatcctggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgagaagagaaacggacagattgatatcgaaagcaagtgcttctttgacatacggaacatgtgatgaagatgatttggaatcgggaaattgcagtcgttctagttcctctgaggatttgtatgatgaaaatatatgcatagtttgctatgataataaacgaaattgcttctttattccttgtggacattgcgctacttgtctctcatgtgccgagaggattacagaggaagaaaacaagaattgcccaatttgtcgaagagtaattcggatagttagaagagtgcttcttgcataaactcaatatttcccttatgtaaattgactctttctaattcaacaatggtaatattagtatagcacttttttcatttttactgcaaattgctgagttgcaatttgacaagagtaggtaaaattatgatgtaccataacatgtttgtgtatgtgtacactcattggtacctattacttgggtcccttttggagaaagctttatggatggtgtagtataatggaaaaaagtaatgcccacaacggaactatgggcactgtacattattgataatttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6512" stop="8172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6808" g_stop="6937" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6938" i_stop="7004" i_length="67">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7005" g_stop="7074" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="200" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7150" g_stop="7447" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="498" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7448" i_stop="7514" i_length="67">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7515" g_stop="7872" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="856" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E721953" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6808" e_stop="6937"/>
          <exon e_start="7005" e_stop="7074"/>
          <exon e_start="7150" e_stop="7447"/>
          <exon e_start="7515" e_stop="7872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATTTGTATGATGAAAATATATGCATAGTTTGCTATGATAATAAACGAAATTGCTTCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAGGTAATTTATATCCCGCCATTTAAGTTATACGCATCGTCAGTATACGATTGATTTTGTTGATACGCAGGATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCAATTC</genome_strand>
        <mrna_strand>AATCGGCCGAATTTGAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAG...................................................................GAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC...........................................................................TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATTTGTATGATGAAAATATATGCATAGTTTGCTATGATAATAAACGAAATTGCTTCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAG...................................................................GATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGATAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202879" ref_strand="+" ref_description="SGN-E202879 [cLEB-1-F21]">
      <seq>gcacgagtgcagctcacccaggcaaaaacccgaatcttaaggacatgtctccaagtcaagtactaagaataagcccaattcaactcaatttcagtcagtaccataccctggtctccttaaatcaggtaagccccttttgattgtcgattatttcatctaaaaactttcatcgaatttgttgaaatgttacaggaagatcaagatcaacgacaggctgcattagagtacattcttaatgttattgtttactcctctgttatccgtaagtttctatacacaaaaatcatgtgtgaaattgatgttactctatgaaattaacaattctgatttgaatcagtggtgttgctgatggttgcggcgttgttaattaaattacttggagtttgtgatggcgaaattgcaagaaatgatgaaactgtgagaagagaaacggacagattgatatcgaaagcaagtgcttctttgacatacggaacatgtgatgaagatgatttggaatcgggaaattgcagtcgttctagttcctctgaggatntgtatgatgaaaatatatgcatagtttgctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="6513" stop="7682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6813" g_stop="7382" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E202879" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6813" e_stop="7382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATTTGTATGATGAAAATATATGCATAGTTTGCTATGAT</genome_strand>
        <mrna_strand>GCACGAGTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATNTGTATGATGAAAATATATGCATAGTTTGCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281254" ref_strand="+" ref_description="SGN-E281254 [cLEL-1-O3](-)">
      <seq>ccatcagcaacaccactgattcaaatcagaattgttaatttcatagagtaacatcaatttcacacatgatttttgtgtatagaaacttacggataacagaggagtaaacaataacattaagaatgtactctaatgcagcctgtcgttgatcttgatcttcctgtaacatttcaacaaattcgatgaaagtttttagatgaaataatcgacaatcaaaaggggcttacctgatttaaggagaccagggtatggtactgactgaaattgagttggggtgggcttattcttagtacttgactcggagacatgtccttaagattcgggtttttgcctgggtgagctgcactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="7464" stop="6513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7164" g_stop="6813" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E281254" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7164" e_stop="6813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAGCAACACCACTGATTCAAATCAGAATTGTTAATTTCATAGAGTAACATCAATTTCACACATGATTTTTGTGTATAGAAACTTACGGATAACAGAGGAGTAAACAATAACATTAAGAATGTACTCTAATGCAGCCTGTCGTTGATCTTGATCTTCCTGTAACATTTCAACAAATTCGATGAAAGTTTTTAGATGAAATAATCGACAATCAAAAGGGGCTTACCTGATTTAAGGAGACCAGGGTATGGTACTGACTGAAATTGAGTTGAATTGGGCTTATTCTTAGTACTTGACTTGGAGACATGTCCTTAAGATTCGGGTTTTTGCCTGGGTGAGCTGCAATTTTGC</genome_strand>
        <mrna_strand>CCATCAGCAACACCACTGATTCAAATCAGAATTGTTAATTTCATAGAGTAACATCAATTTCACACATGATTTTTGTGTATAGAAACTTACGGATAACAGAGGAGTAAACAATAACATTAAGAATGTACTCTAATGCAGCCTGTCGTTGATCTTGATCTTCCTGTAACATTTCAACAAATTCGATGAAAGTTTTTAGATGAAATAATCGACAATCAAAAGGGGCTTACCTGATTTAAGGAGACCAGGGTATGGTACTGACTGAAATTGAGTTGGGGTGGGCTTATTCTTAGTACTTGACTCGGAGACATGTCCTTAAGATTCGGGTTTTTGCCTGGGTGAGCTGCACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392499" ref_strand="+" ref_description="SGN-E392499 [TUS-36-B3](-)">
      <seq>aaaggaaattgcttctttattccttgtggacattgcgctacttgtctctcatgtgccgagaggattacagaggaagaaaacaagaattgcccaatttgtcgaagagtaattcggagagttagaagagtgcttcttgcataaactcaatatttcccttatgtaaattgactctttctaattcaacaatggtaatattagtatagcacttttttcatttttactgcaaattgctgagttgcaatttgacaagagtaggtaaaattatgatgtaccataacatgtttgtgtatgtgtacactcattggtacctattacttgggtcccttttggagaaagctttatggatggtgtagtataatggaaaaaagtaatgcccacaacggaactatgggcaaagtacattattgataatttcaattcagaaattttagctaaacgtttttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="7086" stop="8185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7386" g_stop="7447" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7448" i_stop="7514" i_length="67">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7515" g_stop="7907" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="455" r_length="393" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E392499" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7386" e_stop="7447"/>
          <exon e_start="7515" e_stop="7907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAAATTGCTTCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAGGTAATTTATATCCCGCCATTTAAGTTATACGCATCGTCAGTATACGATTGATTTTGTTGATACGCAGGATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCAATTCAGAAATTTTAGCTTTTCATTTTTATAAAATATTTC</genome_strand>
        <mrna_strand>AAAGGAAATTGCTTCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAG...................................................................GATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCAAAGTACATTATTGATAATTTCAATTCAGAAATTTTAGCTAAACGTTTTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281448" ref_strand="-" ref_description="SGN-E281448 [cLEL-1-O3]">
      <seq>tctttattcctgtgggacattgcgctacttgtctctcatgtgccgagaggtaatttatatcccgccatttaagttatacgcattcgtcagtatacgattgattttgttgatacgcanggattacagaggaagaaaacaagaattgcccaatttgtcgaagagtaattcggagagttagaagagtgcttcttgcataaactcaatatttcccttatgtaaattgactctttctaattcaacaatggtaatattagtatagcacttttttcatttttactgcaaattgctgagttgcaatttgacaagagtaggtaaaattatgatgtaccataacatgtttgtgtatgtgtacactcattggtacctattacttgggtcccttttggagaaagctttatggatggtgtagtataatggaaaaaagtaatgggcacaacggaactatgggcactgtacattattgataatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="7099" stop="8169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7399" g_stop="7868" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="488"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E281448" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281448" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7399" e_stop="7868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAGGTAATTTATATCCCGCCATTTAAGTTATACGCA-TCGTCAGTATACGATTGATTTTGTTGATACGCA-GGATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCA</genome_strand>
        <mrna_strand>TCTTTATTCCTGTGGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAGGTAATTTATATCCCGCCATTTAAGTTATACGCATTCGTCAGTATACGATTGATTTTGTTGATACGCANGGATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGGGCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293744" ref_strand="+" ref_description="SGN-E293744 [cLET-21-E13]">
      <seq>gaaccgaactcacctgtaacttttttaaccgcaaaatctcttctctggtcttctcttctccgtaatattaattaataaaataaataaatcaatcaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtacggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagtgctattgctataaagaatttgagtcgagggtttttgcctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12453" stop="13641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12753" g_stop="13341" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E293744" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12753" e_stop="13341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCGAACTCACCTGTAACTTTTTTAACCGCAAAATCTCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATG</genome_strand>
        <mrna_strand>GAACCGAACTCACCTGTAACTTTTTTAACCGCAAAATCTCTTCTCTGGTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATCAATCAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTACGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGAATTTGAGTCGAGGGTTTTTGCCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333313" ref_strand="+" ref_description="SGN-E333313 [cTOD-20-H13]">
      <seq>tcttctcttctcttctcttctccgtaatattaattaataaaataaataaataaataaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagtgctattgctataaagattttgagtcgagggttcttgcctctatggtctggtngtgtcatcactgctcttgattgctttgtattcttatttctttgagactatggagtgaggaagctggaagcactctttgctgtccttatttgcagtatggccgtctcatttgcatggatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12491" stop="14518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12791" g_stop="13371" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13372" i_stop="14117" i_length="746">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.868" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14118" g_stop="14218" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="682" r_length="101" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E333313" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12791" e_stop="13371"/>
          <exon e_start="14118" e_stop="14218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATGGTCTGGTGTTGTCATCACTGCTCTTGATTGGTATTTTCTTTTTTCTTCTCTTGTTATCCTTTTTCGAATTCCAGTTCTGTTTTTTTTTTCATGGATTCTTTTTCTGTTAGACTTTGATTTTTAATATGATAGTAGACGCTCTATCCCAATTTAAGTGTCCTAGTTCGACCGACTGAGCATGGATTTTAAGATATCATGCGATCTTAAATTTGCCTATTAGAATGTTGGAATTGAAAAACTAAATGTGTAAAGAGACAATCTTTATGTGACAAGACTAAAAAGGAAAGGAAAGACACTTAAATTGAGATACAAGTTGTAATTCATGTGAGCTTTGATTAACAAAAGGCCTTTGCTTGTTGCCTCCTTTTGATTCCATAACTTCTTGTATATACTTAAATATAACTAATGAGGAAGTGGAGGAAAATGGTTATACTTTGCTAGGTCAAATATTTATATAGTGAAGCACTATAGTATAGTGTTTAATTATTTTATAATGATCCACGAAATGGATAAAGATGATTCATTTAGCTGGTCCAATTAGTTCTGAATTGAAGTTCAGTTGAACGATTGACCTTTTTTTAATAATTGTCTCCATACACTGTAGCATTCTCTATTATCAAGACTTGGGAACCATGTATTGTTCCTTCATTTCTTATTGGTTTATTTTAAAATAGTTTCCCTTTTTCTTTAAATAAAGATGCACAATAACAATTTATTCGACTGTTTAATTGCCTATTGAGCTCAAGAACAGCCTTTGCAATCCTTTTATTCTGCAGCTTTGTATTCTTATTTC-TTGAGAACTATGGAGTGAGGAAGCTGGAAGCACTCTTTGCTGTCCTTA-TTGCAGTTATGGCCGTCTCATTTGCATGGATGTTTG</genome_strand>
        <mrna_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATGGTCTGGTNGTGTCATCACTGCTCTTGATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTATTCTTATTTCTTTGAG-ACTATGGAGTGAGGAAGCTGGAAGCACTCTTTGCTGTCCTTATTTGCAG-TATGGCCGTCTCATTTGCATGGATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270816" ref_strand="+" ref_description="SGN-E270816 [cLEM-6-O17]">
      <seq>tcttctcttctcttctcttctccgtaatattaattaataaaataaataaataaataaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagtgctattgctataaagattttgagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12491" stop="13623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12791" g_stop="13323" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E270816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12791" e_stop="13323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCG</genome_strand>
        <mrna_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370173" ref_strand="+" ref_description="SGN-E370173 [TUS-28-I2]">
      <seq>tcttctcttctcttctcttctccgtaatattaattaataaaataaataaataaataaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12491" stop="13597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12791" g_stop="13297" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E370173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12791" e_stop="13297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGT</genome_strand>
        <mrna_strand>TCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340663" ref_strand="+" ref_description="SGN-E340663 [cTOF-1-H1]">
      <seq>ttctcttctcttctccgtaatattaattaataaaataaataaataaataaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagtgctattgctataaagattttgagtccagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12498" stop="13628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12798" g_stop="13328" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E340663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12798" e_stop="13328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGT</genome_strand>
        <mrna_strand>TTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCCAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337928" ref_strand="+" ref_description="SGN-E337928 [cTOE-14-J16]">
      <seq>tcttctcttctccgtaatattaattaataaaataaataaataaataaatgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaagttattggaagtgctattgctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12501" stop="13610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12801" g_stop="13310" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E337928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12801" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAA</genome_strand>
        <mrna_strand>TCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAAGTTATTGGAAGTGCTATTGCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747524" ref_strand="+" ref_description="SGN-E747524 [GI|30267435]">
      <seq>atgcctctaaacgatgaagaagaacaccaccaattgttggcggatagattactcgaggaagaatctgcctatgagtactccgacaaagtccatattatcggagtcgacgatgatgatgatttcaccaaaactcctcctttttcctggaaaaaactatgggcttttactggaccgggtttcttgatgagtatagcctttttggatccgggaaatcttgaaggagatcttcaggcaggggctatcgctgggtattctctgttatggctactcttttgggctacggctatgggattacttgttcagcttttagcggctcgtttgggtgtcgctacttctaggcatttggctgagctatgtagggatgagtatccgaaatgggctcgattgcttttgtgggtcatgaccgaattggctctaattggggctgatattcaagaggttattggaagtgctattgctataaagattttgagtcgagggttcttgcctctatggtctggtgttgtcatcactgctcttgattgctttgtattcttatttcttgagaactatggagtgaggaagctggaagcactctttgctgtccttattgcagttatggccgtctcatttgcatggatgtttggagagacgaaaccaaatggagtggaacttcttgttggtgtggtggtcccaaaacttagctccaaaacaataaagcaggcagtgggaattgtagggtgtgttatcatgcctcacaatgtgtttctacattcggcgctagtgcagtccagagacattgacaaccgtaagattggcagagttcgagaagcacttaattactactccatagagtcgacaattgccttggcaatttcattcatgatcaatttgtttgttacaacagtgttcgcaaagtcattttatggtagtgaaatagccaatagcattggcctagaaaatgctggtcaatatcttcaggataagtatggtgggggatcgttccccatcctttatatctgggctattggattgttggctgctggacagagtagtactataactggtacttatgctggacaatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="12548" stop="16481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12848" g_stop="13371" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13372" i_stop="14117" i_length="746">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14118" g_stop="14254" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="661" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14255" i_stop="14374" i_length="120">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14375" g_stop="15027" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="1314" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15966" g_stop="16181" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1315" r_stop="1530" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E747524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12848" e_stop="13371"/>
          <exon e_start="14118" e_stop="14254"/>
          <exon e_start="14375" e_stop="15027"/>
          <exon e_start="15966" e_stop="16181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATGGTCTGGTGTTGTCATCACTGCTCTTGATTGGTATTTTCTTTTTTCTTCTCTTGTTATCCTTTTTCGAATTCCAGTTCTGTTTTTTTTTTCATGGATTCTTTTTCTGTTAGACTTTGATTTTTAATATGATAGTAGACGCTCTATCCCAATTTAAGTGTCCTAGTTCGACCGACTGAGCATGGATTTTAAGATATCATGCGATCTTAAATTTGCCTATTAGAATGTTGGAATTGAAAAACTAAATGTGTAAAGAGACAATCTTTATGTGACAAGACTAAAAAGGAAAGGAAAGACACTTAAATTGAGATACAAGTTGTAATTCATGTGAGCTTTGATTAACAAAAGGCCTTTGCTTGTTGCCTCCTTTTGATTCCATAACTTCTTGTATATACTTAAATATAACTAATGAGGAAGTGGAGGAAAATGGTTATACTTTGCTAGGTCAAATATTTATATAGTGAAGCACTATAGTATAGTGTTTAATTATTTTATAATGATCCACGAAATGGATAAAGATGATTCATTTAGCTGGTCCAATTAGTTCTGAATTGAAGTTCAGTTGAACGATTGACCTTTTTTTAATAATTGTCTCCATACACTGTAGCATTCTCTATTATCAAGACTTGGGAACCATGTATTGTTCCTTCATTTCTTATTGGTTTATTTTAAAATAGTTTCCCTTTTTCTTTAAATAAAGATGCACAATAACAATTTATTCGACTGTTTAATTGCCTATTGAGCTCAAGAACAGCCTTTGCAATCCTTTTATTCTGCAGCTTTGTATTCTTATTTCTTGAGAACTATGGAGTGAGGAAGCTGGAAGCACTCTTTGCTGTCCTTATTGCAGTTATGGCCGTCTCATTTGCATGGATGTTTGGAGAGACGAAACCAAATGGAGTGGAACTTCTTGTTGGTGAGAAAATGCAGCACAAAATATAATTGCAGTATTCATATCTGCCACTTTTCAAGCATCCAGATCATAGACTATTTTTTATGCATGGCTTTGAATTCTCCTGATAAATTGTAACTGCAGGTGTGGTGGTCCCAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGA</genome_strand>
        <mrna_strand>ATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATGGTCTGGTGTTGTCATCACTGCTCTTGATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTATTCTTATTTCTTGAGAACTATGGAGTGAGGAAGCTGGAAGCACTCTTTGCTGTCCTTATTGCAGTTATGGCCGTCTCATTTGCATGGATGTTTGGAGAGACGAAACCAAATGGAGTGGAACTTCTTGTTG........................................................................................................................GTGTGGTGGTCCCAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704017" ref_strand="+" ref_description="SGN-E704017 [FA23AE07]">
      <seq>caaaacttagctccaaaacaataaagcaggcagtgggaattgtagggtgtgttatcatgcctcacaatgtgtttctacattcggcgctagtgcagtccagagacattgacaaccgtaagattggcagagttcgagaagcacttaattactactccatagagtcgacaattgccttggcaatttcattcatgatcaatttgtttgttacaacagtgttcgcaaagtcattttatggtagtgaaatagccaatagcattggcctagaaaatgctggtcaatatcttcaggataagtatggtgggggatcgttccccatcctttatatctgggctattggattgttggctgctggacagagtagtactataactggtacttatgctggacaatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14087" stop="16486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14387" g_stop="15027" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16186" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="862" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E704017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14387" e_stop="15027"/>
          <exon e_start="15966" e_stop="16186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATAT</genome_strand>
        <mrna_strand>CAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334231" ref_strand="+" ref_description="SGN-E334231 [cTOD-21-J6]">
      <seq>caaaacttagctccaaaacaataaagcaggcagtgggaattgtagggtgtgttatcatgcctcacaatgtgtttctacattcggcgctagtgcagtccagagacattgacaaccgtaagattggcagagttcgagaagcacttaattactactccatagagtcgacaattgccttggcaatttcattcatgatcaatttgtttgttacaacagtgttcgcaaagtcattttatggtagtgaaatagccaatagcattggcctagaaaatgctggtcaatatcttcaggataagtatggtgggggatcgttccccatcctttatatctgggctattggattgttggctgctggacagagtagtactataactggtacttatgctggacaatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtatgttcgtatcttcaaacgttctgcttgaatgaactaattttttaaaagttagaattggatctattacctattcttttcctcttgaattnggaattcatccacttaataacaacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14087" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14387" g_stop="15150" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E334231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14387" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTA</genome_strand>
        <mrna_strand>CAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTNGGAATTCATCCACTTAATAAC-AACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258729" ref_strand="+" ref_description="SGN-E258729 [cLEG-50-A23]">
      <seq>gggggatcgttccccatcctttatatctgggctattggattgttttttgccggacagagtagttctataactggtacttatgctggacaatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatatgttcttagcagaaagctgagatcatgttgtacccttgtagcccgagttaagtatttatagccttccccatttctttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14386" stop="16566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14686" g_stop="15027" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16266" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="643" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E258729" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14686" e_stop="15027"/>
          <exon e_start="15966" e_stop="16266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTT</genome_strand>
        <mrna_strand>GGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTTTTTGCCGGACAGAGTAGTTCTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717213" ref_strand="+" ref_description="SGN-E717213 [FB19BH02]">
      <seq>cgttccccatcctttatatctgggctattggattgttggctgctggacagagtagtactataactggtacttatgctggacaatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatatgttcttagcagaaagctgagatcatgttgtacccttgtagcccgagttaagtatttatagccttccccatttctttcctttaagaagtgttggattgttgggtctgctcaaagtaagcattaagagtgagtttgctgtgattacatcccatgttttttgggtatgactaattgagacggtgactgtagcacctgcattangaaaattagttagagcttgtaatattgatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14393" stop="16719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14693" g_stop="15027" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16419" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="789" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E717213" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14693" e_stop="15027"/>
          <exon e_start="15966" e_stop="16419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCAG</genome_strand>
        <mrna_strand>CGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTANGAAAATTAGTTAGAGCTTGTAATATTGATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200953" ref_strand="+" ref_description="SGN-E200953 [cLEC-5-C11]">
      <seq>caatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14473" stop="16468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14773" g_stop="15027" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16168" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="458" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E200953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14773" e_stop="15027"/>
          <exon e_start="15966" e_stop="16168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAG</genome_strand>
        <mrna_strand>CAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204456" ref_strand="+" ref_description="SGN-E204456 [cLEC-24-C5]">
      <seq>caatttattatgggaggttttctgcacatgaggttgaaaaaatggcagagagcgttaataacaagaagttgtgctatcgtcccaactctgatagttgctcttgcttttgacacctctgagaaatcattagatgttctgaacgagtggctcaacgttcttcagtgtgtccaaatcccttttgccctgatcccccttctttgtcttgtatccagagaagaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14473" stop="16333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14773" g_stop="15027" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16033" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="323" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E204456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14773" e_stop="15027"/>
          <exon e_start="15966" e_stop="16033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATC</genome_strand>
        <mrna_strand>CAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370172" ref_strand="+" ref_description="SGN-E370172 [TUS-28-I2](-)">
      <seq>tgtcttgtatccagaaaaaaaatcatgggcgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatatgttcttaacaaaaagctgagatcatgttgtacccttgtagcccgagttaagtatttatagccttccccatttctttcctttaagaagtgttggattgttgggtgtgctcaaagtaagcattaagagtgagtttgctgtgattacatcccatgttttttgggtatgactaattgagacaggtgactgtagcacctgcattaggaaaatgagttagaggcttgtaatattgatccagcagttttagattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14671" stop="16734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14971" g_stop="15027" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16434" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="528" r_length="471" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E370172" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14971" e_stop="15027"/>
          <exon e_start="15966" e_stop="16434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGAC-GGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGA-GCTTGTAATATTGATCCAGCAGTTTTAGATTTTG</genome_strand>
        <mrna_strand>TGTCTTGTATCCAGAAAAAAAATCATGGGCGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAACAAAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTGTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACAGGTGACTGTAGCACCTGCATTAGGAAAATGAGTTAGAGGCTTGTAATATTGATCCAGCAGTTTTAGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228945" ref_strand="+" ref_description="SGN-E228945 [cLEL-29-E7](-)">
      <seq>gaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtggcatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttctcgggaaattaccttccccaattggattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14689" stop="16458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14989" g_stop="15027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16158" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="232" r_length="193" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E228945" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14989" e_stop="15027"/>
          <exon e_start="15966" e_stop="16158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAA</genome_strand>
        <mrna_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGCATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCTCGGGAAATTACCTTCCCCAATTGGATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222899" ref_strand="+" ref_description="SGN-E222899 [cLEL-38-K4](-)">
      <seq>gaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattgagattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14689" stop="16458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14989" g_stop="15027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16158" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="233" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E222899" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14989" e_stop="15027"/>
          <exon e_start="15966" e_stop="16158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTG-GTTTGTAAAAAACAAAA</genome_strand>
        <mrna_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGAGATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228849" ref_strand="+" ref_description="SGN-E228849 [cLEL-29-E7](-)">
      <seq>gaaatcatgggtgttttcaagattggctctactatgaaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="14689" stop="16458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14989" g_stop="15027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16158" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="232" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E228849" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14989" e_stop="15027"/>
          <exon e_start="15966" e_stop="16158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTATAACAGGTTGGGGGGTCAGGAAATCTGATTCTTTAAATTATCAAGATCTTGAACTCATTTTGATACACCATATTGTATAATCATTTATAAAGGATTTTCTAAAAAGAAAACAAATACTATTAATTAAGTTTAACTTTTAATTTGAATGTGGACAATCGATTGAAGTTAGAGGTGTCCTTTTGTCCCACTCTTTGATTTGTGTTCTTTAAATGGTGCATTTCTCCACTGAAGTTGCGATATGCTCAAACTTTTTTCCAGTTTGTATGAAATCTATATACTCTTGGACCTAGACAGAATCTGCTGGTATATTTGTTGAGAATTAGGTGTCATTGTTAGATTCTAGGATTTGGAGCACCTTCTTCTTTCTGTTATTTGTCTGACTGTGTCCTGTCTTTTTCCTAACCTTTATAGACTATCAGCAAAGTACATTAAGATGTGGGAATTGTCTGGTTCAACATCATTTGATTTTTACTTGTCTGGGAGATAAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAA</genome_strand>
        <mrna_strand>GAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353659" ref_strand="+" ref_description="SGN-E353659 [cTOS-10-D3]">
      <seq>aaaatctcctacattttatcttgatcacttgattcaattgactgaatagtttccacggagctgctatgggcgtacatgcatagtgttatgcagattgagagccttgcttgttaattttatcaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatatgttcttagcagaaagctgagatcatgttgtacccttgtagcccgagttaagtatttatagccttccccatttctttcctttaagaagtgttggattgttgggtctgctcaaagtaagcattaagagtgagtttgctgtgattacatcccatgttttttgggtatgactaattgagacggtgactgtagcacctgcattangaaaattagttagagcttgtaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="15336" stop="16710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15636" g_stop="15758" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15759" i_stop="15965" i_length="207">
            <donor d_prob="0.133" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16418" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="576" r_length="453" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E353659" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15636" e_stop="15758"/>
          <exon e_start="15966" e_stop="16418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCA</genome_strand>
        <mrna_strand>AAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAG...............................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTANGAAAATTAGTTAGAGCTTGTAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351486" ref_strand="+" ref_description="SGN-E351486 [cTOS-12-C21]">
      <seq>aaaatctcctacattttatcttgatcacttgattcaattgactgaatagtttccacggagctgctatgggcgtacatgcatagtgttatgcagattgagagccttgcttgttaattttatcaggtgatatcatggctagtagctgtgctggttatgctgattaatggctatcttttgatggactctttatcttctgctgtcagtgggatgttgtttacatctgttgtagttgcttttacaggtgcatacattgccttcattgtatacctcatttcacggggaattaccttccccaattggtttgtaaaaaacaaaagtatctcgagcatagataattgatatatgttcttagcagaaagctgagatcatgttgtacccttgtagcccgagttaagtatttatagccttccccatttctttcctttaagaagtgttggattgttgggtctgctcaaagtaagcattaagagtgagtttgctgtgattacatcccatgttttttgggtatgactaattgagacggtgactgtagcacctgcattaggaaaattagttagagcttgtaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="15336" stop="16710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15636" g_stop="15758" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15759" i_stop="15965" i_length="207">
            <donor d_prob="0.133" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15966" g_stop="16409" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="567" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="577"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E351486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15636" e_stop="15758"/>
          <exon e_start="15966" e_stop="16409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAGGTTTCAGAATAATTGATGAACTATTAATATATACCTGGCTAAGATCATACTCTCACATGTCGTTTTAGACATAATCTGTCTGGGATTTTCATCGTCTCTTAGAATGGATTTTTGTGTCAGGGGAATGTAGTTTCTCTGCGATTCAACTTTGCATGTTTGATGTTTCTTACACTGCTTACATCTAATGTTTCTTCTGTTCCCTTTTAGGTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAAT</genome_strand>
        <mrna_strand>AAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAG...............................................................................................................................................................................................................GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352045" ref_strand="+" ref_description="SGN-E352045 [cTOS-13-D19]">
      <seq>atttctttcctttaagaagtgttggattgttgggtctgctcaaagtaagcattaagagtgagtttgctgtgattacatcccatgttttttgggtatgactaattgagacggtgactgtagcacctgcattaggaaaattagttagagcttgtaatattgatccagcagttttagattttggtggaaaataaacaaactgtcctcagctaatctcaagtttgttctttggaattctgtttagacttcttagggatttcgttattttcttgcattcaaatcttcctgtattggctaaagtccacagacttctggccttcaaatgcataactgattttaaattcagcctacaaaactgtaattccttcaattgggccaagaatgaattgtggctgtgtagtaaattacagcccaatgtattaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="15955" stop="16978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16255" g_stop="16678" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E352045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16255" e_stop="16678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCAGCAGTTTTAGATTTTGGTGGAAAATAAACAAACTGTCCTCAGCTAATCTCAAGTTTGTTCTTTGGAATTCTGTTTAGACTTCTTAGGGATTTCGTTATTTTCTTGCATTCAAATCTTCCTGTATTGGCTAAAGTCCACAGACTTCTGGCCTTCAAATGCATAACTGATTTTAAATTCAGCCTACAAAACTGTAATTCCTTCAATTGGGCCAAGAATGAATTGTGGCTGTGTAGTAAATTACAGCCCAATGTATTAATCAC</genome_strand>
        <mrna_strand>ATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCAGCAGTTTTAGATTTTGGTGGAAAATAAACAAACTGTCCTCAGCTAATCTCAAGTTTGTTCTTTGGAATTCTGTTTAGACTTCTTAGGGATTTCGTTATTTTCTTGCATTCAAATCTTCCTGTATTGGCTAAAGTCCACAGACTTCTGGCCTTCAAATGCATAACTGATTTTAAATTCAGCCTACAAAACTGTAATTCCTTCAATTGGGCCAAGAATGAATTGTGGCTGTGTAGTAAATTACAGCCCAATGTATTAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744989" ref_strand="+" ref_description="SGN-E744989 [GI|872126]">
      <seq>ctctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19933" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19633" g_stop="19017" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="920" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="921" polyA_stop="945"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E744989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19633" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>CTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713804" ref_strand="+" ref_description="SGN-E713804 [FB09CH01]">
      <seq>tttggtctctattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctaatatatagaattcatttgtttatttgtccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19916" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19616" g_stop="19017" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="903" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="904" polyA_stop="918"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E713804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19616" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>TTTGGTCTCTATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTAATATATAGAATTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712148" ref_strand="+" ref_description="SGN-E712148 [FB04AB09]">
      <seq>cttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19901" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19601" g_stop="19017" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="888" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="889" polyA_stop="903"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E712148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19601" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>CTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714056" ref_strand="+" ref_description="SGN-E714056 [FB10BF01]">
      <seq>ccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19741" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19441" g_stop="19017" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="728" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="739"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E714056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19441" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>CCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373286" ref_strand="-" ref_description="SGN-E373286 [TUS-31-N9]">
      <seq>ccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19682" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19382" g_stop="19017" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="669" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E373286" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19382" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>CCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292391" ref_strand="-" ref_description="SGN-E292391 [cLET-1-H3]">
      <seq>cttaaagcaccagaaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19616" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19316" g_stop="19017" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="603" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E292391" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292391" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19316" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>CTTAAAGCACCAGAAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378551" ref_strand="-" ref_description="SGN-E378551 [TUS-31-N9]">
      <seq>tccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctatgatatagatttcatttgtttatttgtccaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19485" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19185" g_stop="19017" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="472" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="483"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E378551" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19185" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>TCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATGATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353167" ref_strand="+" ref_description="SGN-E353167 [cTOS-14-O7]">
      <seq>gaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19462" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19162" g_stop="19017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="449" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="459"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E353167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19162" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>GAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354477" ref_strand="+" ref_description="SGN-E354477 [cTOS-17-J2]">
      <seq>gaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagatttcatttgtttatttgtccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19462" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19162" g_stop="19017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17483" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="449" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="459"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E354477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19162" e_stop="19017"/>
          <exon e_start="17785" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</genome_strand>
        <mrna_strand>GAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733330" ref_strand="+" ref_description="SGN-E733330 [LB04CD02]">
      <seq>gaggcactcactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcggggagtgtaagggtaaagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattaaataaatttcatttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19939" stop="17190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19643" g_stop="19017" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17491" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="922" r_length="295" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="923" polyA_stop="933"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E733330" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19643" e_stop="19017"/>
          <exon e_start="17785" e_stop="17491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTT</genome_strand>
        <mrna_strand>GAGGCACTCACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGGGGAGTGTAAGGGTAAAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTAAATAAATTTCATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732099" ref_strand="+" ref_description="SGN-E732099 [LB01BB03]">
      <seq>gtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatatagaattcatttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19854" stop="17191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19017" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17491" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="833" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E732099" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19017"/>
          <exon e_start="17785" e_stop="17491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTT</genome_strand>
        <mrna_strand>GTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGAATTCATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308949" ref_strand="+" ref_description="SGN-E308949 [cLEY-23-K23]">
      <seq>aaaaccagagtattaagttggacaaagaaacattaaaggtcactaagcacgaggcaacacagtaaagtaggatcaatcaattgcacatgcacggattgtactgtgtatttgcattatttttacatattgtggatctgaattaatattttataaattaatgacaaagatattaatatattgtgggatctaatgcagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcctctattatattnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="18280" stop="17206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17980" g_stop="17508" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="495"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E308949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17980" e_stop="17508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTAT</genome_strand>
        <mrna_strand>AAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710081" ref_strand="+" ref_description="SGN-E710081 [FA54AF04]">
      <seq>tacacacacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19943" stop="17216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19643" g_stop="19017" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17516" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="897" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E710081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19643" e_stop="19017"/>
          <exon e_start="17785" e_stop="17516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCC</genome_strand>
        <mrna_strand>TACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310047" ref_strand="+" ref_description="SGN-E310047 [cLEZ-8-O17]">
      <seq>gctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctatcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctcctttattttatattctttcgnggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactcgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19652" stop="17220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19352" g_stop="19017" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17520" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="600" r_length="264" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E310047" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19352" e_stop="19017"/>
          <exon e_start="17785" e_stop="17520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACT</genome_strand>
        <mrna_strand>GCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTATCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTG--ATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTATTTTATATTCTTTCGNGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745590" ref_strand="+" ref_description="SGN-E745590 [GI|47105864]">
      <seq>gacacaatcaatacacacacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattctttcgtggagtgtaagggtagagatttgtactagtcttcactactttactcctttttggactctcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19953" stop="17222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19654" g_stop="19017" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17525" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="899" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="902" polyA_stop="921"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E745590" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19654" e_stop="19017"/>
          <exon e_start="17785" e_stop="17525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAATCAATACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTC</genome_strand>
        <mrna_strand>GACACAATCAATACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704018" ref_strand="+" ref_description="SGN-E704018 [FA23AE08]">
      <seq>cgctacacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagaatttggccacattgcctccttttttttatattctttcgtggaatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19941" stop="17272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19641" g_stop="19017" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17572" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="839" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E704018" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19641" e_stop="19017"/>
          <exon e_start="17785" e_stop="17572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAC-ACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAG</genome_strand>
        <mrna_strand>CGCTACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGA-ATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704720" ref_strand="+" ref_description="SGN-E704720 [FA25AC10]">
      <seq>cacacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19939" stop="17285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19639" g_stop="19017" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17585" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="824" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E704720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19639" e_stop="19017"/>
          <exon e_start="17785" e_stop="17585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTT</genome_strand>
        <mrna_strand>CACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731878" ref_strand="+" ref_description="SGN-E731878 [LA28BG06]">
      <seq>cacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctanagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctccttttttttatattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19937" stop="17285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19637" g_stop="19017" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17585" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="822" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E731878" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19637" e_stop="19017"/>
          <exon e_start="17785" e_stop="17585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTT</genome_strand>
        <mrna_strand>CACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTANAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710829" ref_strand="+" ref_description="SGN-E710829 [FA56DG01]">
      <seq>acacactctcctttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctccctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcctttggttatttatggggaaggggtcctccatttggatctgcttaaagaatttggccccattgcctcctttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19926" stop="17294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19638" g_stop="19017" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17594" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="816" r_length="194" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E710829" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19638" e_stop="19017"/>
          <exon e_start="17785" e_stop="17594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCT-CCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCT-CATTTGGATCTGCTTAGAG-ATTTGGCCACATTGCCTCCTTTTTTTT</genome_strand>
        <mrna_strand>ACACACTCTC-CTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCCTTTGGTTATTTATGGGGAAGGGGTCCTCCATTTGGATCTGCTTAAAGAATTTGGCCCCATTGCCTCCTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699788" ref_strand="+" ref_description="SGN-E699788 [FA11AH05]">
      <seq>tttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggatctgcttagagatttggccacattgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19928" stop="17303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19628" g_stop="19017" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17603" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="795" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E699788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19628" e_stop="19017"/>
          <exon e_start="17785" e_stop="17603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTC</genome_strand>
        <mrna_strand>TTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735149" ref_strand="+" ref_description="SGN-E735149 [LB14CC08]">
      <seq>catacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggggaaggggtcctcatttggatctgcttagagatttggccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19939" stop="17310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19639" g_stop="19017" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17611" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="798" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="810"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E735149" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19639" e_stop="19017"/>
          <exon e_start="17785" e_stop="17611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCAC</genome_strand>
        <mrna_strand>CATACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGGGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697836" ref_strand="+" ref_description="SGN-E697836 [FA04BG04]">
      <seq>cccatcactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttatggtgaaagggtcctcatttggatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19939" stop="17327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19641" g_stop="19017" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17631" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="779" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E697836" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19641" e_stop="19017"/>
          <exon e_start="17785" e_stop="17631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGAT</genome_strand>
        <mrna_strand>CCCA-TCACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAAGGGTCCTCATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309839" ref_strand="+" ref_description="SGN-E309839 [cLEZ-10-I10]">
      <seq>gctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctatcaaaggaaaagtgaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcaaagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatttgacatgtataatttatcttttggttatttatggtgaaggggtcctcatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19652" stop="17331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19352" g_stop="19017" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17631" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="489" r_length="153" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E309839" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19352" e_stop="19017"/>
          <exon e_start="17785" e_stop="17631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGAT</genome_strand>
        <mrna_strand>GCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTATCAAAGGAAAAGTGAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAAAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTG--ATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340693" ref_strand="+" ref_description="SGN-E340693 [cTOF-1-D14]">
      <seq>tctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttaaaacatattttgatatttgacatgtataatttatcttttggttatttatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19930" stop="17351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19630" g_stop="19017" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17651" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="748" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E340693" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19630" e_stop="19017"/>
          <exon e_start="17785" e_stop="17651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGT</genome_strand>
        <mrna_strand>TCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTT-AAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312470" ref_strand="+" ref_description="SGN-E312470 [cLEZ-20-O24]">
      <seq>ctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatattttgatatttgacatgtataatttatcttttggttatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19714" stop="17354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19414" g_stop="19017" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17654" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="530" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E312470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19414" e_stop="19017"/>
          <exon e_start="17785" e_stop="17654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTAT</genome_strand>
        <mrna_strand>CTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269067" ref_strand="+" ref_description="SGN-E269067 [cLEI-16-D10]">
      <seq>gtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctgaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaagagttcaaaacatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19854" stop="17392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19017" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17692" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="632" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E269067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19017"/>
          <exon e_start="17785" e_stop="17692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTT</genome_strand>
        <mrna_strand>GTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTGAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744988" ref_strand="+" ref_description="SGN-E744988 [GI|1430841]">
      <seq>cttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaagtttggtagctggatgggctgtgatgagctggctcttgttctaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19901" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19601" g_stop="19017" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="662" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E744988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19601" e_stop="19017"/>
          <exon e_start="17785" e_stop="17709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAG</genome_strand>
        <mrna_strand>CTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344098" ref_strand="+" ref_description="SGN-E344098 [cTOF-16-C11]">
      <seq>acactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctgggaaagttggtagctggatgggctgtgatgagctggctcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19936" stop="17415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19636" g_stop="19017" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17715" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="691" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E344098" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19636" e_stop="19017"/>
          <exon e_start="17785" e_stop="17715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTT</genome_strand>
        <mrna_strand>ACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGAAAGTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343234" ref_strand="+" ref_description="SGN-E343234 [cTOF-17-A10]">
      <seq>cactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctnccagcccatctcttaacgatgagagtggagcagagaaattgaagatgctggggagtttggtagctggatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19935" stop="17435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19635" g_stop="19017" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17785" g_stop="17735" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="670" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E343234" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19635" e_stop="19017"/>
          <exon e_start="17785" e_stop="17735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTACTCCTATTATTTATATTTTCTTTAAGCAATTAACATTTTTTTTGTAAATGACCCTAAAACAGATAACCACACTAACTAACTGTGATAAAAAAATTTTACTTCCTCTCCTCTGTCCGATATTGTTTGTCATGTTGAATTTAATTAATTTTCTAAATTAAATTAGTCGTTTTTGATATTTTAAATTAAAAAATTAGATATTCTAAAACTATATGAGAAATTGCAAGCATATTAATATGATGAAAAATATATCTTAAAAGTCAAATGTTTTATAGTTTGACTCAAAATAAAAATCATAACAAACAATACCAGACCGAGTGAGTAACATTTTGTCAATACAAAGCTATTTTTTGTTATATTGAATGGCATATATATATGGTGTCGGTGGAAGATCATTAATGGCGTAGATATATTAGGTCGCTGCACGGTGACAACGAAAAGATTATTGCACTCTTCTTTAGTTGCAGTATTCACTTCAAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCT</genome_strand>
        <mrna_strand>CACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTNCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCAGAGAAATTGAAGATGCTGGGGAGTTTGGTAGCTGGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740290" ref_strand="+" ref_description="SGN-E740290 [LC20DD01]">
      <seq>cactatctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgaggcgggtctatcagttgttcatgatgacttgtgaagatgtgactttaatttttatattgataatattaagtatttctatgttgggtaacccggggcacaattactcactaaaaatgattttttatcgtttaattaatgataggatgataatagtttaattattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19937" stop="18155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19637" g_stop="19017" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="18618" i_length="399">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18617" g_stop="18455" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="784" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="796"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E740290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19637" e_stop="19017"/>
          <exon e_start="18617" e_stop="18455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTA</genome_strand>
        <mrna_strand>CACTATCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................GCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740076" ref_strand="+" ref_description="SGN-E740076 [LC20AA05]">
      <seq>cacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagcccacctgcacctccttccgaagctcctggacctagcatggactccgattcagctcccagcccatctcttaacgatgaggcgggtctatcagttgttcatgatgacttgtgaagatgtgactttaatttttatattgataatattaagtatttctatgttgggtaacccggggcacaattactcactaaaaatgattttttatcgtttaattaatgataggatgataatagtttaattattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19937" stop="18155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19637" g_stop="19017" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19016" i_stop="18618" i_length="399">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18617" g_stop="18455" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="784" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="796"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E740076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19637" e_stop="19017"/>
          <exon e_start="18617" e_stop="18455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAGGTACGCAATCTCATAAAAAATTCTCTTCCTATTTTTTGTTTTTAATCTTCTGTTCCTGTCTAAGATATTATGGATCATTAGTGCCAATCCAGATCTAGTTAATAATACATATAACCAGTTCCTGCTCATAACATACTACAAGTTTTAGCTTATCTGCATTCTCGTAATTCAGGATGAATATGATTACACTAATTGCATACCGCGGATCTAAAGTTCATTTGCAGAATTCAATAGTTTTGATCAAATTCTAAATTTATTCTTAGAAATTTGATTAATATATATATATAAAAAATTAAGATCCATACTAATTGGTATGAATATGGTGTCGTAGTGTATGTTAGCTTCGTCGGTGGTGAGTCATTTACGTTTTACAGCTTTCATAATTTGGTCTTTTTACAGGCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTA</genome_strand>
        <mrna_strand>CACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................GCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697498" ref_strand="+" ref_description="SGN-E697498 [FA03AF10]">
      <seq>ccatttcactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccacaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctaccaaaggaaaagtaaagggaaagaagggaaagaaacccaatgcatcaccaccaccttctcccgatatgatgagcccacctgcacctccttccgaaactcctggacctaccatggactccgattcacctcccagcccatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19935" stop="18728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19641" g_stop="19028" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E697498" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19641" e_stop="19028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTC</genome_strand>
        <mrna_strand>CCATTTCACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCACAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTACCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACCCAATGCATCACCACCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAACTCCTGGACCTACCATGGACTCCGATTCACCTCCCAGCCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348181" ref_strand="+" ref_description="SGN-E348181 [cTOF-27-F6]">
      <seq>tctttttctctatttttggtctacattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctnccgatatgatgagcccacctgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19930" stop="18784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19630" g_stop="19084" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E348181" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19630" e_stop="19084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACC</genome_strand>
        <mrna_strand>TCTTTTTCTCTATTTTTGGTCTACATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTNCCGATATGATGAGCCCACCTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208064" ref_strand="+" ref_description="SGN-E208064 [cLEC-34-B19]">
      <seq>tttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggctcctagcaaaggaaaagtaaagggaaagaagggaaagaaacacaatgcatcaccagcaccttctcccgatatgatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19928" stop="18795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19628" g_stop="19095" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E208064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19628" e_stop="19095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGC</genome_strand>
        <mrna_strand>TTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347538" ref_strand="+" ref_description="SGN-E347538 [cTOF-26-K13]">
      <seq>tctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatcagcaccagcaagttctccaccacttaaagcaccagcaagttctccaccagtacaatctccaccagctccagctccagaggtagctacaccgccagctgtttctactccaccggctgcagctccagttgctgcacctgttgcttcggagacaactccagctccggcttctagcaaaggaaaagtaaagggaaagaaaggaaagaaacacaatgcattaccagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19930" stop="18814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19630" g_stop="19114" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E347538" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19630" e_stop="19114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACC</genome_strand>
        <mrna_strand>TCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTTCTAGCAAAGGAAAAGTAAAGGGAAAGAAAGGAAAGAAACACAATGCATTACCAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697338" ref_strand="+" ref_description="SGN-E697338 [FA02BA07]">
      <seq>cgcctttcacactctctttttctctatttttggtctatattttcttttagctaccatggatagaaaatttgtatttctagtatcaattttgtgcattgtagtggcaagtgtcacgggtcagacacctgccgcagcacccgttggtgctaaggctggtactactccaccagctgctgcaccaactaagccgaaaactcctgctcccgcaacagcaccagcctcggccccacctacagctgttcctgttgctccagtaaccgctccagttactgctcccactacacctgttgttgctgcacccgtatccgtaccaccaagttctccaccacttaaagcaccatcaagttctcccaccagtacaatctccaccagctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="19937" stop="18969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19644" g_stop="19269" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E697338" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19644" e_stop="19269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCT-CCACCAGTACAATCTCCACCAGCTCCA</genome_strand>
        <mrna_strand>CGCCTTTCACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCCGTACCACCAAGTTCTCCACCACTTAAAGCACCATCAAGTTCTCCCACCAGTACAATCTCCACCAGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305133" ref_strand="+" ref_description="SGN-E305133 [cLEY-18-N14]">
      <seq>aaactttaatagctcaatgcttcaaagatttgcatctgattgaagatatggaacttgttctcaccttaagatgcctctggaatactgctcttgctcaacctgatgaccctgaattcccatccctcggcgtctttagttgcatggctagacttctcaacaggtgcacccgtgaccaaaaatggctttcaagaggccataacgtgtatgttccttattatgcagctcatatcattggctcctacaccatgaacaaagttagattctctgttttggctgttaaatcagacgtaatttcgccattaatagacctcttaagaggtaagataacttgggtcgaacaaagagtggctgttagagcacttggtcacattgcacgacatagaagaacatttgaagatattaaggtccatgaagtagagattataaaactagccattgatatagcttccaaatgcatttatacaatctatagcgagtttgtgagcaagagaagtgaaaacagagtcgaatatcatcgttatttgatgataaaaggcctcggagaattcgaaatggagagtaaaaaagcagagtcttgggcttgccaaatgcaatgctggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="27185" stop="28388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27485" g_stop="28088" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E305133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27485" e_stop="28088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTAATAGCTCAATGCTTCAAAGATTTGCATCTGATTGAAGATATGGAACTTGTTCTCACCTTAAGATGCCTCTGGAATACTGCTCTTGCTCAACCTGATGACCCTGAATTCCCATCCCTCGGCGTCTTTAGTTGCATGGCTAGACTTCTCAACAGGTGCACCCGTGACCAAAAATGGCTTTCAAGAGGCCATAACGTGTATGTTCCTTATTATGCAGCTCATATCATTGGCTCCTACACCATGAACAAAGTTAGATTCTCTGTTTTGGCTGTTAAATCAGACGTAATTTCGCCATTAATAGACCTCTTAAGAGGTAAGATAACTTGGGTCGAACAAAGAGTGGCTGTTAGAGCACTTGGTCACATTGCACGACATAGAAGAACATTTGAAGATATTAAGGTCCATGAAGTAGAGATTATAAAACTAGCCATTGATATAGCTTCCAAATGCATTTATACAATCTATAGCGAGTTTGTGAGCAAGAGAAGTGAAAACAGAGTCGAATATCATCGTTATTTGATGATAAAAGGCCTCGGAGAATTCGAAATGGAGAGTAAAAAAGCAGAGTCTTGGGCTTGCCAAATGCAATGCTGGTCACT</genome_strand>
        <mrna_strand>AAACTTTAATAGCTCAATGCTTCAAAGATTTGCATCTGATTGAAGATATGGAACTTGTTCTCACCTTAAGATGCCTCTGGAATACTGCTCTTGCTCAACCTGATGACCCTGAATTCCCATCCCTCGGCGTCTTTAGTTGCATGGCTAGACTTCTCAACAGGTGCACCCGTGACCAAAAATGGCTTTCAAGAGGCCATAACGTGTATGTTCCTTATTATGCAGCTCATATCATTGGCTCCTACACCATGAACAAAGTTAGATTCTCTGTTTTGGCTGTTAAATCAGACGTAATTTCGCCATTAATAGACCTCTTAAGAGGTAAGATAACTTGGGTCGAACAAAGAGTGGCTGTTAGAGCACTTGGTCACATTGCACGACATAGAAGAACATTTGAAGATATTAAGGTCCATGAAGTAGAGATTATAAAACTAGCCATTGATATAGCTTCCAAATGCATTTATACAATCTATAGCGAGTTTGTGAGCAAGAGAAGTGAAAACAGAGTCGAATATCATCGTTATTTGATGATAAAAGGCCTCGGAGAATTCGAAATGGAGAGTAAAAAAGCAGAGTCTTGGGCTTGCCAAATGCAATGCTGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369602" ref_strand="+" ref_description="SGN-E369602 [TUS-25-P6](-)">
      <seq>ttgtgctgcgtactgtggtgataattatgggtcaacagattttgatgtgcttgaaaatgtgagagatgcaatcttaaggatgacatattactggtataatttcatgccgctttccagaggaactgctgttgttgggttcatagttttgcttggattactgctcgctgctaatatggagttcacaggaagcattccaaaaggtctgcaggtggattgggaagccatcctggagtttgactcgagttcctttgtagattctgtaaagaaatggttgtacccatctctcaaagtcagcacatcgtggaaaagctacccagatgtcacgtcaacatttgagacgactggatcagttgttgctgctttgagcacctattcagactaagggagatacatcattggtttcatccgggatcaattatttgaaggaaattcgctggtgcattatctgacttgatcctgctgcggatgaattgaggcgaaatgttttgcattattgacattctccaagtgtaccattacttgtgaattgttgtattttagttgtattgtgtatgatctgctctctcattgtttcctttcttttagattaccaaattagatttcaggatagttatttaaaaaaaaatgaataaatgggttttctagtctttgttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="31889" stop="29925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31589" g_stop="31497" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31496" i_stop="31418" i_length="79">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31417" g_stop="31113" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="398" r_length="305" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31112" i_stop="30483" i_length="630">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.284" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30482" g_stop="30225" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="656" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="677"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E369602" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31589" e_stop="31497"/>
          <exon e_start="31417" e_stop="31113"/>
          <exon e_start="30482" e_stop="30225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTGGTAAGATATATTAACTTCTATTTGGTTGATCACAAGGGAAGCGTATGGTTCTCTTTAATTTGTCTGATAATTTTTGCAGGTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTGTTGGGTTCATAGTTTTGCTTGGATTACTGCTCGCTGCTAATATGGAGTTCACAGGAAGCATTCCAAAAGGTCTGCAGGTGGATTGGGAAGCCATCCTGGAGTTTGACTCGAGTTCCTTTGTAGATTCTGTAAAGAAATGGTTGTACCCATCTCTCAAAGTCAGCACATCGTGGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTCTGAGCACCTATTCAGACTAAGGGAGATACATCATTGGTAAGTGGCTGTACATACGAAGGAAACAAATTTCTCTACTCTATTCTGCTGGATATTTTGGGTTTACTGTTTGTAGTTCAACAAAATTTGGAGCATGTCCTTGTGTATAATGGTTTCCCTCATATTTCACCTCTCCAATTTTAATAGGAGTATTTAATTATACTAAGACCATACAATTGACGAAGGCCAACTTCTTAATCTACTCAACAAACAGGTGCATGCACAATAATTGAAATGAGATTCTTTTAAATCACCAGCACGATAAGACTGAATTGTCAGTGGCTAAAAAGACTAGAACCTCATTTGTGGCTGTGGTTGCTACACATGAGGATTGTTCAATCAACTGGATGTTTTCGGTCTCTGTCAACTGTAGCTTCATTGGAATTAAAACCAGAGAAATTACTGAAATTTAAGTGGTGGAAGTATGGGATACAGTACTAGTATGTTAACTCACAAGGACATGACTGCAATTTTTCTTTGGTAGTTCTGTTCATAAGCCCTAAAGCTTCTCTGAACTTGTTAATCTACTTCAGCAGTTCTAAGTTTTGCAATGCTTTTTATTTGTGAGAACTGTGTGAAATGTGAGGGTGCAGCTCTCTCTTAACTTTCCCATATATTCGCTGCATATAGGTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAGATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATAAATGGGTTTTCTAGTCTTTGTTTTC</genome_strand>
        <mrna_strand>TTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG...............................................................................GTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTGTTGGGTTCATAGTTTTGCTTGGATTACTGCTCGCTGCTAATATGGAGTTCACAGGAAGCATTCCAAAAGGTCTGCAGGTGGATTGGGAAGCCATCCTGGAGTTTGACTCGAGTTCCTTTGTAGATTCTGTAAAGAAATGGTTGTACCCATCTCTCAAAGTCAGCACATCGTGGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTTTGAGCACCTATTCAGACTAAGGGAGATACATCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCCGGGATCAATTATTTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAAATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAAAAATGAATAAATGGGTTTTCTAGTCTTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238793" ref_strand="+" ref_description="SGN-E238793 [cLEL-9-H11](-)">
      <seq>tagattctgtaaagaaatggttgtacccatctctcaaagtcagcacatcgtagaaaagctacccagatgtcacgtcaacatttgagacgactggatcagttgttgctgctctgagcacctattcagactaagggagatacatcattggtttcatccgggatcaattatctgaaggaaattcgctggtgcattatctgacttgatcctgctgcggatgaattgaggcgagatgttttgcattattgacattctccaagtgtaccattacttgtgaattgttgtattttagttgtattgtgtatgatctgctctctcattgtttcctttcttttagattaccaaattagatttcaggatagttatttaaaaagaaatgaataaatgggttttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="31559" stop="29937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31259" g_stop="31113" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31112" i_stop="30483" i_length="630">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.284" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30482" g_stop="30237" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="393" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E238793" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31259" e_stop="31113"/>
          <exon e_start="30482" e_stop="30237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTCTGTAAAGAAATGGTTGTACCCATCTCTCAAAGTCAGCACATCGTGGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTCTGAGCACCTATTCAGACTAAGGGAGATACATCATTGGTAAGTGGCTGTACATACGAAGGAAACAAATTTCTCTACTCTATTCTGCTGGATATTTTGGGTTTACTGTTTGTAGTTCAACAAAATTTGGAGCATGTCCTTGTGTATAATGGTTTCCCTCATATTTCACCTCTCCAATTTTAATAGGAGTATTTAATTATACTAAGACCATACAATTGACGAAGGCCAACTTCTTAATCTACTCAACAAACAGGTGCATGCACAATAATTGAAATGAGATTCTTTTAAATCACCAGCACGATAAGACTGAATTGTCAGTGGCTAAAAAGACTAGAACCTCATTTGTGGCTGTGGTTGCTACACATGAGGATTGTTCAATCAACTGGATGTTTTCGGTCTCTGTCAACTGTAGCTTCATTGGAATTAAAACCAGAGAAATTACTGAAATTTAAGTGGTGGAAGTATGGGATACAGTACTAGTATGTTAACTCACAAGGACATGACTGCAATTTTTCTTTGGTAGTTCTGTTCATAAGCCCTAAAGCTTCTCTGAACTTGTTAATCTACTTCAGCAGTTCTAAGTTTTGCAATGCTTTTTATTTGTGAGAACTGTGTGAAATGTGAGGGTGCAGCTCTCTCTTAACTTTCCCATATATTCGCTGCATATAGGTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAGATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATAAATGGGTTTTCTA</genome_strand>
        <mrna_strand>TAGATTCTGTAAAGAAATGGTTGTACCCATCTCTCAAAGTCAGCACATCGTAGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTCTGAGCACCTATTCAGACTAAGGGAGATACATCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAGATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATAAATGGGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222708" ref_strand="+" ref_description="SGN-E222708 [cLEL-16-H18](-)">
      <seq>catctctcatagtcagcacatcgtggaaaacctacccagatgtcacgtcaacatttgagacgactggatcagatgttgctgctctgagcacctatacagactaagggagatacatcattggtttcatccgggatcaattatctgaaggaaattcgctggtgcatcatctgacttgatcctgctgcggatgaattgaggctaaatgttatgcattattgacattctccaagtgtaccattacttgtgaattgttgtattttagctgtattgtgtatgatctgctctctcagtgttacctttcttttagattaccaaattagatttcaggatagttatttaaaaagaaatgaatgtatgggttttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="31532" stop="29937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31232" g_stop="31113" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31112" i_stop="30483" i_length="630">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.284" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30482" g_stop="30237" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="366" r_length="246" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="382"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E222708" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31232" e_stop="31113"/>
          <exon e_start="30482" e_stop="30237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCAAAGTCAGCACATCGTGGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTCTGAGCACCTATTCAGACTAAGGGAGATACATCATTGGTAAGTGGCTGTACATACGAAGGAAACAAATTTCTCTACTCTATTCTGCTGGATATTTTGGGTTTACTGTTTGTAGTTCAACAAAATTTGGAGCATGTCCTTGTGTATAATGGTTTCCCTCATATTTCACCTCTCCAATTTTAATAGGAGTATTTAATTATACTAAGACCATACAATTGACGAAGGCCAACTTCTTAATCTACTCAACAAACAGGTGCATGCACAATAATTGAAATGAGATTCTTTTAAATCACCAGCACGATAAGACTGAATTGTCAGTGGCTAAAAAGACTAGAACCTCATTTGTGGCTGTGGTTGCTACACATGAGGATTGTTCAATCAACTGGATGTTTTCGGTCTCTGTCAACTGTAGCTTCATTGGAATTAAAACCAGAGAAATTACTGAAATTTAAGTGGTGGAAGTATGGGATACAGTACTAGTATGTTAACTCACAAGGACATGACTGCAATTTTTCTTTGGTAGTTCTGTTCATAAGCCCTAAAGCTTCTCTGAACTTGTTAATCTACTTCAGCAGTTCTAAGTTTTGCAATGCTTTTTATTTGTGAGAACTGTGTGAAATGTGAGGGTGCAGCTCTCTCTTAACTTTCCCATATATTCGCTGCATATAGGTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAGATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATAAATGGGTTTTCTA</genome_strand>
        <mrna_strand>CATCTCTCATAGTCAGCACATCGTGGAAAACCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGATGTTGCTGCTCTGAGCACCTATACAGACTAAGGGAGATACATCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATCATCTGACTTGATCCTGCTGCGGATGAATTGAGGCTAAATGTTATGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGCTGTATTGTGTATGATCTGCTCTCTCAGTGTTACCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATGTATGGGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261362" ref_strand="+" ref_description="SGN-E261362 [cLEG-57-O23]">
      <seq>tcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgcaacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttggccacctggtgtaacagtacggcacttgaagggaagcgtcttgaaggaacaaggatcactgttgtgaaaatgggtgagattggttacgactttgcaattagaacaccttgcacacctgctagatgggatgactttgatgtggagatgacatcagcctgggaggctctttgtgctgcgtactgtggtgataattatgggtcaacagattttgatgtgcttgaaaatgtgagagatgcaatcttaaggatgacatattactggtataatttcatgccgctttccagaggaactgctgttngntgggttcatagttttgcttggattactgctcgctgctaatatggagttcacaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35209" stop="31022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34909" g_stop="34803" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="194" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="294" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="32987" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32872" g_stop="32834" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="425" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130">
            <donor d_prob="0.746" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32703" g_stop="32613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="516" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32612" i_stop="31595" i_length="1018">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31594" g_stop="31497" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="614" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31496" i_stop="31418" i_length="79">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31417" g_stop="31322" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="711" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E261362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34909" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="32987"/>
          <exon e_start="32872" e_stop="32834"/>
          <exon e_start="32703" e_stop="32613"/>
          <exon e_start="31594" e_stop="31497"/>
          <exon e_start="31417" e_stop="31322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGGGTAATTTTTTATATTTAGTCCTCTTTATACTGTATAACAGTATGTTACTCTTGAATATTATCTCTCATCGGGGTCTTTTTTCTAATTTTCCCTCCTTTCTTATTGCCTGATCAGGAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAATGTAGAACACCATTTAACCTTATTGGAATTCAACCTTTTGTGTGTGTGGAAAGGAGGGTGACTTGAGTAAAATATCACTTAAACTAGATCTGATTTTTCTTATTCCTGTCAACTTTTGTTGTTCCTTCCAGGGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAGGTATCCTCTTGATTTATTACTAGAAAGCCATTTTCTACTCCATGACATAGTTTTTGGATATTTGAAAGCAATATTACATCAATGTAAAACAGTAACACAAAAATTCTTTAGTGGTCGTTTTGTAGGCTGTATTAGGTAGAATAATGCTAGTACTAAATTTTAGTACAATGTTTGGTTTTAAATCTCACCTATGTACTACTAATACCAGTATTACTTATACACCCTATTTAATACGATTCTTATGCATAGTAAACCATGGCATTAACTATATCAGTACCATTCCTATACTCATAATCATACACCCTATTCAGTAGTACTCTTGATAATTCAATGCATGTCAGATTGCTAGTTTTAGTACAACAAACCAAACAATCAATAAGAAATGATGTCAGCATAAAAATTCCCTGTACTAGTCTTCAAACCAAACAGCCCCTTATAGTACAGTTTTTCATGGTTTATTCATCTTGTGCCTGCTCGGAGATGATCAGTTAAGTCTTATAATAAGCCTATATTAGTCAGCTTGGGAGTCTGTTCATCAGACTATTCTCTCACTTTTAAAAAGAGATTTTGCTAAGCACTGAAACAAGCAGAAGTAATGAACCTTTTCCTGTCTGAACATAGAAGTAAGCATTATGCCTGAGATGATCTGGGTTTTTGTTCGGTATGATCTTTCTGAAATGATTTGGCATATATTTCTTACTTGAACCTGTTTGTAGACCTACTATTTTGTTTCTAACTGAAGCTTTATCTATACCCATTAATTTCCTATTGTTGCTTGCTTCTGTTTGTGTAGCTCCCTTTTTTTCCCTCCTTTCTTCTTTTTATTTGTTCTTGAGACACACATATATTTTCTGTTTGGTACTTAAATAATAGTGTTCTAATTAAGTTAACTAACTAGTGCCCGAAAGTTGGCCCGGACACCACGGTCATCACACACACAAAAAAAAGAGTTAACTAAGTTGAGACTTAAATGATAGTGTTCTAGTTAGACCAAGTTGAACACAAAACTGTTATGCAGGCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTGGTAAGATATATTAACTTCTATTTGGTTGATCACAAGGGAAGCGTATGGTTCTCTTTAATTTGTCTGATAATTTTTGCAGGTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTT-GTTGGGTTCATAGTTTTGCTTGGATTACTGCTCGCTGCTAATATGGAGTTCACAGGAAG</genome_strand>
        <mrna_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG..................................................................................................................GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT..................................................................................................................................GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG...............................................................................GTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTNGNTGGGTTCATAGTTTTGCTTGGATTACTGCTCGCTGCTAATATGGAGTTCACAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369603" ref_strand="+" ref_description="SGN-E369603 [TUS-25-P6]">
      <seq>tcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgcaacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttggccacctggtgtaacagtacggcacttgaagggaagcgtcttgaaggaacaaggatcactgttgtgaaaatgggtgagattggttacgactttgcaattagaacaccttgcacacctgctagatgggatgactttgatgtggagatgacatcagcctgggaggctctttgtgctgcgtactgtggtgataattatgggtcaacagattttgatgtgcttgaaaatgtgagagatgcaatcttaaggatgacatattactggtataatttcatgccgctttccagaggaactgctgttgttggttcatagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35209" stop="31064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34909" g_stop="34803" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="194" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="294" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="32987" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32872" g_stop="32834" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="425" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130">
            <donor d_prob="0.746" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32703" g_stop="32613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="516" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32612" i_stop="31595" i_length="1018">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31594" g_stop="31497" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="614" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31496" i_stop="31418" i_length="79">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31417" g_stop="31364" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="667" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E369603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34909" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="32987"/>
          <exon e_start="32872" e_stop="32834"/>
          <exon e_start="32703" e_stop="32613"/>
          <exon e_start="31594" e_stop="31497"/>
          <exon e_start="31417" e_stop="31364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGGGTAATTTTTTATATTTAGTCCTCTTTATACTGTATAACAGTATGTTACTCTTGAATATTATCTCTCATCGGGGTCTTTTTTCTAATTTTCCCTCCTTTCTTATTGCCTGATCAGGAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAATGTAGAACACCATTTAACCTTATTGGAATTCAACCTTTTGTGTGTGTGGAAAGGAGGGTGACTTGAGTAAAATATCACTTAAACTAGATCTGATTTTTCTTATTCCTGTCAACTTTTGTTGTTCCTTCCAGGGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAGGTATCCTCTTGATTTATTACTAGAAAGCCATTTTCTACTCCATGACATAGTTTTTGGATATTTGAAAGCAATATTACATCAATGTAAAACAGTAACACAAAAATTCTTTAGTGGTCGTTTTGTAGGCTGTATTAGGTAGAATAATGCTAGTACTAAATTTTAGTACAATGTTTGGTTTTAAATCTCACCTATGTACTACTAATACCAGTATTACTTATACACCCTATTTAATACGATTCTTATGCATAGTAAACCATGGCATTAACTATATCAGTACCATTCCTATACTCATAATCATACACCCTATTCAGTAGTACTCTTGATAATTCAATGCATGTCAGATTGCTAGTTTTAGTACAACAAACCAAACAATCAATAAGAAATGATGTCAGCATAAAAATTCCCTGTACTAGTCTTCAAACCAAACAGCCCCTTATAGTACAGTTTTTCATGGTTTATTCATCTTGTGCCTGCTCGGAGATGATCAGTTAAGTCTTATAATAAGCCTATATTAGTCAGCTTGGGAGTCTGTTCATCAGACTATTCTCTCACTTTTAAAAAGAGATTTTGCTAAGCACTGAAACAAGCAGAAGTAATGAACCTTTTCCTGTCTGAACATAGAAGTAAGCATTATGCCTGAGATGATCTGGGTTTTTGTTCGGTATGATCTTTCTGAAATGATTTGGCATATATTTCTTACTTGAACCTGTTTGTAGACCTACTATTTTGTTTCTAACTGAAGCTTTATCTATACCCATTAATTTCCTATTGTTGCTTGCTTCTGTTTGTGTAGCTCCCTTTTTTTCCCTCCTTTCTTCTTTTTATTTGTTCTTGAGACACACATATATTTTCTGTTTGGTACTTAAATAATAGTGTTCTAATTAAGTTAACTAACTAGTGCCCGAAAGTTGGCCCGGACACCACGGTCATCACACACACAAAAAAAAGAGTTAACTAAGTTGAGACTTAAATGATAGTGTTCTAGTTAGACCAAGTTGAACACAAAACTGTTATGCAGGCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTGGTAAGATATATTAACTTCTATTTGGTTGATCACAAGGGAAGCGTATGGTTCTCTTTAATTTGTCTGATAATTTTTGCAGGTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTGTTGGGTTCATAGTTTT</genome_strand>
        <mrna_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG..................................................................................................................GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT..................................................................................................................................GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG...............................................................................GTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTGTT-GGTTCATAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255414" ref_strand="+" ref_description="SGN-E255414 [cLEG-30-H16]">
      <seq>tcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgcaacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttggccacctggtgtaacagtacggcacttgaagggaagcgtcttgaaggaacaaggatcactgttgtgaaaatgggtgagattggttacgactttgcaattagaacaccttgcacacctgctagatgggatgactttgatgtggagatgacatcagcctgggaggctctttgtgctgcgtactgtggtgataattatgggtcaacagattttgatgtgcttgaaaatgtgagagatgcaatcttaaggatgacatattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35209" stop="31197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34909" g_stop="34803" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="194" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="294" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="32987" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32872" g_stop="32834" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="425" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130">
            <donor d_prob="0.746" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32703" g_stop="32613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="516" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32612" i_stop="31595" i_length="1018">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31594" g_stop="31497" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="614" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E255414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34909" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="32987"/>
          <exon e_start="32872" e_stop="32834"/>
          <exon e_start="32703" e_stop="32613"/>
          <exon e_start="31594" e_stop="31497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGGGTAATTTTTTATATTTAGTCCTCTTTATACTGTATAACAGTATGTTACTCTTGAATATTATCTCTCATCGGGGTCTTTTTTCTAATTTTCCCTCCTTTCTTATTGCCTGATCAGGAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAATGTAGAACACCATTTAACCTTATTGGAATTCAACCTTTTGTGTGTGTGGAAAGGAGGGTGACTTGAGTAAAATATCACTTAAACTAGATCTGATTTTTCTTATTCCTGTCAACTTTTGTTGTTCCTTCCAGGGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAGGTATCCTCTTGATTTATTACTAGAAAGCCATTTTCTACTCCATGACATAGTTTTTGGATATTTGAAAGCAATATTACATCAATGTAAAACAGTAACACAAAAATTCTTTAGTGGTCGTTTTGTAGGCTGTATTAGGTAGAATAATGCTAGTACTAAATTTTAGTACAATGTTTGGTTTTAAATCTCACCTATGTACTACTAATACCAGTATTACTTATACACCCTATTTAATACGATTCTTATGCATAGTAAACCATGGCATTAACTATATCAGTACCATTCCTATACTCATAATCATACACCCTATTCAGTAGTACTCTTGATAATTCAATGCATGTCAGATTGCTAGTTTTAGTACAACAAACCAAACAATCAATAAGAAATGATGTCAGCATAAAAATTCCCTGTACTAGTCTTCAAACCAAACAGCCCCTTATAGTACAGTTTTTCATGGTTTATTCATCTTGTGCCTGCTCGGAGATGATCAGTTAAGTCTTATAATAAGCCTATATTAGTCAGCTTGGGAGTCTGTTCATCAGACTATTCTCTCACTTTTAAAAAGAGATTTTGCTAAGCACTGAAACAAGCAGAAGTAATGAACCTTTTCCTGTCTGAACATAGAAGTAAGCATTATGCCTGAGATGATCTGGGTTTTTGTTCGGTATGATCTTTCTGAAATGATTTGGCATATATTTCTTACTTGAACCTGTTTGTAGACCTACTATTTTGTTTCTAACTGAAGCTTTATCTATACCCATTAATTTCCTATTGTTGCTTGCTTCTGTTTGTGTAGCTCCCTTTTTTTCCCTCCTTTCTTCTTTTTATTTGTTCTTGAGACACACATATATTTTCTGTTTGGTACTTAAATAATAGTGTTCTAATTAAGTTAACTAACTAGTGCCCGAAAGTTGGCCCGGACACCACGGTCATCACACACACAAAAAAAAGAGTTAACTAAGTTGAGACTTAAATGATAGTGTTCTAGTTAGACCAAGTTGAACACAAAACTGTTATGCAGGCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG</genome_strand>
        <mrna_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG..................................................................................................................GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT..................................................................................................................................GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201812" ref_strand="+" ref_description="SGN-E201812 [cLEC-11-B18]">
      <seq>gcactagcagttcctccgacacatctacttcatacagtttgattgatgataggtcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgcaacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttggccacctggtgtaacagtacggcacttgaagggaagcgtcttgaaggaacaaggatcactgttgtgaaaatgggtgagattggttacgactttgcaattagaacaccttgcacacctgctagatgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35262" stop="32345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34962" g_stop="34803" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="247" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="347" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="32987" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="439" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32872" g_stop="32834" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="478" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130">
            <donor d_prob="0.746" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32703" g_stop="32645" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="537" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E201812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34962" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="32987"/>
          <exon e_start="32872" e_stop="32834"/>
          <exon e_start="32703" e_stop="32645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAGCAGTTCCTCCGACACATCTACTTCATACAGTTTGATTGATGATAGGTCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGGGTAATTTTTTATATTTAGTCCTCTTTATACTGTATAACAGTATGTTACTCTTGAATATTATCTCTCATCGGGGTCTTTTTTCTAATTTTCCCTCCTTTCTTATTGCCTGATCAGGAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAATGTAGAACACCATTTAACCTTATTGGAATTCAACCTTTTGTGTGTGTGGAAAGGAGGGTGACTTGAGTAAAATATCACTTAAACTAGATCTGATTTTTCTTATTCCTGTCAACTTTTGTTGTTCCTTCCAGGGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATG</genome_strand>
        <mrna_strand>GCACTAGCAGTTCCTCCGACACATCTACTTCATACAGTTTGATTGATGATAGGTCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG..................................................................................................................GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT..................................................................................................................................GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260161" ref_strand="+" ref_description="SGN-E260161 [cLEG-52-B17]">
      <seq>tcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgcaacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttggccacctggtgtaacagtacggcacttgaagggaagcgtcttgaaggaacaaggatcactgttgtgaaaatgggtgagattggttacgactttgcaattagaacaccttgcacacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35209" stop="32355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34909" g_stop="34803" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="194" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="294" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="32987" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32872" g_stop="32834" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="425" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130">
            <donor d_prob="0.746" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32703" g_stop="32655" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="474" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E260161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34909" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="32987"/>
          <exon e_start="32872" e_stop="32834"/>
          <exon e_start="32703" e_stop="32655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGGGTAATTTTTTATATTTAGTCCTCTTTATACTGTATAACAGTATGTTACTCTTGAATATTATCTCTCATCGGGGTCTTTTTTCTAATTTTCCCTCCTTTCTTATTGCCTGATCAGGAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAATGTAGAACACCATTTAACCTTATTGGAATTCAACCTTTTGTGTGTGTGGAAAGGAGGGTGACTTGAGTAAAATATCACTTAAACTAGATCTGATTTTTCTTATTCCTGTCAACTTTTGTTGTTCCTTCCAGGGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCT</genome_strand>
        <mrna_strand>TCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG..................................................................................................................GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT..................................................................................................................................GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212848" ref_strand="+" ref_description="SGN-E212848 [cLEC-73-K22]">
      <seq>gccttacaagctgaatggagaaactcaactaaaggcacagggaagtctgggaagagactcaggagaagggaaaaactaaattctattagtttaaacagaggtggagctggttgtagcactagcagttcctccgacacatctacttcatacagtttgattgatgataggtcaactggacgttccatgatgtcatggaaccacttgtattcattggctgtcaaatggagacaaatatctgaaccatgtgatccagtggtgtggattaacaagctaagtgaggaatttaatactggttttgggtctcacacccctcttgttctcggtcaagccaaagttgttcgctaccatcccaattttcagagaaccttgactgttgccaaggctgttatcaaggagaataaatcagtgtgccacaaggaagacaagataattgatctttctgaacaacagaagttgcaagaaataatggctgcagaatccagctcagatctttacagagttgttggtcaagacttttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="35377" stop="32719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35077" g_stop="34803" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33847" g_stop="33761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="362" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33493" g_stop="33394" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="462" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33078" g_stop="33019" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="522" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E212848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35077" e_stop="34803"/>
          <exon e_start="33847" e_stop="33761"/>
          <exon e_start="33493" e_stop="33394"/>
          <exon e_start="33078" e_stop="33019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACAAGCTGAATGGAGAAACTCAACTAAAGGCACAGGGAAGTCTGGGAAGAGACTCAGGAGAAGGGAAAAACTAAATTCTATTAGTTTAAACAGAGGTGGAGCTGGTTGTAGCACTAGCAGTTCCTCCGACACATCTACTTCATACAGTTTGATTGATGATAGGTCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAGGTACTCCACCTGCTATTAATTTACTGAAGTTTAGTTAGTTATTAAAGTTCATTGAAATCATACTTGGTCTCAGCATTCTAACAAATATCTACTACATTTTGCTAAAGTCATTCCGATTTGAATTGAGTACACAATGATATTTTTTTCTTTTATTTTTGATAAAGAGCTCTTATTTCTTAATATCAACAATGATATTCTCTTAGTACATAAAGATAATAAGAATCACTATCTTCACCACAAGCATGAAAAAAACCCTCCTTCAATTTGCTTAACTTGCTCCGTTTGATCCTTTAGTTCTATGGAGTTATTTCCCAGCTTCTGTGTTGGTGTACTTCACTCTCATTTGGAGCACTCACGAAAAGAAGGATTCTAGCATGTATGACTTTTGAAGTTTGGGTGAAGATCTTGGAGGACTAAAGACCTATTTCACTTTGGCTCGTCTAAGAAACTAAGACTAAAATCATTAATTCGTATTTACGCCGGGATAACTAGATATACCACACTACTTACCACGTCGACGAGATTCTAGTGTATGAAGTGAGCCCCCTAAAAAGTCGTAGAGAAATTCAAGAAAAAACACCTGTCATGCGAATCAAATATCCATACACTTACCCAATTATCTAAGCAGTGAGAGCATTATGCGCAAGTCTAAACACATTAGTAATAATTTGATAAAAGGAGAACAATAAATCCAACTAAATCCATAATCGTATCATTAATTCCACGATCACCAAATACCCTCTGCCCAAAATACGACCGTGAAGCATCTAATAGAGTTAATGAGTTCAGCTATCAGGCATGGAAATCCCAAGAAAGAAGATATATGCTATAAAATAGATAGAGCTGAAACAACGGCCTCCACTAAAGGTCTTTAGCTTTACTATAATGAAGATAATGATTCTAATGTGCCGCTTTGGCTTTACTTTTTGATGAGAATTCTTGTTTTTTTGCATAGTGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAGGTAAGAGCTTTACCTTTCTGATAAGCGCAAATGTATTTTTTTACTATTATTTTTTTGTGTAACATGGATACTGCAAATGATACTGATGCTATGATTGACCTTTTGAGCTCATTACAGGATGTGTAAATTGATGCTACCCTTGTAAATAACTTTACAACAGCTTGCTGCTGGCCATGAATAAAAATTCCTTTTTAACAGTCAAAAGGCATAACCTTTCTTATTTGTATTAGCTCTTTCTCAAGGCTCTTATTGTCTGTCAATGTTCAGAACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAAGTGAGTTTGTTTGCTTATGACCTAAATTCATCTTTTGCACTGTTTTGCCTTTTTCACAGTGTATAGTTTTTGGTTGTTGATAATTATTTTTCTGGTTCATGTCAAAATACCTACTTTATAGCATTTCCCATGACAATAAAAGCGTCAAATTGAGAAATCTTTATTAGGCTGATTTTATATTGGTCACATTTCTTCCTTAGATGTTAACTGATGGCTCTCTGAAATCAAACTAGGTGTCCACTTGCTAGGATTAATACTTCAGTGCCATACCTTTTTTTTTCTGGTGGTAATCAACACCTGAACTGTACTTTGCAGATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTG</genome_strand>
        <mrna_strand>GCCTTACAAGCTGAATGGAGAAACTCAACTAAAGGCACAGGGAAGTCTGGGAAGAGACTCAGGAGAAGGGAAAAACTAAATTCTATTAGTTTAAACAGAGGTGGAGCTGGTTGTAGCACTAGCAGTTCCTCCGACACATCTACTTCATACAGTTTGATTGATGATAGGTCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG...........................................................................................................................................................................................................................................................................AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCCACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA...........................................................................................................................................................................................................................................................................................................................ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253710" ref_strand="+" ref_description="SGN-E253710 [cLEG-32-E9]">
      <seq>gaggaggcacataagaaagcaatccaaattgaaaggaatttcctcgaggcttgggctcatctagcacagttttatcaagacctagcaaactcagagaaggccttggaatgccttcatcagattttgcaaatagatgggaggtacgcgaaagcatatcacctgcgcgggctgctacttcatggaatgggagagcataggaatgctataaaagatttatcaatggggttggctattgatagcgcaaacattgaatgcttgtatctacgagcttcttgctatcatgctattggattatataaagaagcagtgaaggactatgatgctgctttagatcttgaattagattctatggaaaagtttgtgcttcaatgcttggcgttctatcagaaagaaattgcattatacactgcatcaaagatgaacagcgaattttcttggtttgatattgatggagatatcgatccccttttcaaggagtattggtgcaaaaggctgcacccaaaaaatgtttgcgaaaaggtctacaggcaacctcctttaaaagaatctttgaaaaaggggaagcaaagaaagcaagaatttactttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="40268" stop="36151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39900" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39899" i_stop="39281" i_length="619">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39280" g_stop="39210" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="140" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39209" i_stop="39066" i_length="144">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39065" g_stop="39009" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="197" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39008" i_stop="38880" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38879" g_stop="38771" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="306" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38770" i_stop="38666" i_length="105">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38665" g_stop="38585" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38584" i_stop="37799" i_length="786">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37798" g_stop="37712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="474" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37711" i_stop="36568" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36567" g_stop="36451" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="591" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E253710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39900"/>
          <exon e_start="39280" e_stop="39210"/>
          <exon e_start="39065" e_stop="39009"/>
          <exon e_start="38879" e_stop="38771"/>
          <exon e_start="38665" e_stop="38585"/>
          <exon e_start="37798" e_stop="37712"/>
          <exon e_start="36567" e_stop="36451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAGGTATCTCTGAATATATGGTGAATACTCTTAATGCTATTTTTCCTGCCAAGTGGGATCCCAATACTTCTATTGGTAGTGCTGATGATATAGAGTTTCTTGATGATGAAGTTGCCTTTTGACTTCGAGAATTTTCTTATACCAAGTTCTTGTTTTTGTTTGTCTCTTTTTTCACCGGTATCTGGAACTCAAGGTTGAGGTAAATATATACTTCTGCATGCAAGTTAAGAAATTCAAGAATAAGGATTTAAATGGCAAGTAGACATTCTATTGCTTAACCAGTGATGAAGAGCCTAACTCTCTGTTATCAGATATTGTGTGAGCGTTCATCTTCTGGGGTGCAATGCACATGTATTGTAATAGCTTTTGCCTTGTTGCATTTTCAGATAAGGTCTCCTGATTAGCTGGTAGATGTTATTAATTTACATCATCAAATTGGATGTTTATGGAATATCTATTGCCATAAGTTTAAAATTCCTAAGACTCAGGAGCTGCTCTAACCTAGTTCTTGATTGGTTGAGTTTCTTCACTTATATTAAATGTGGCAAAACAATGAGATCTCTTTGAAGATATTTTTTTAATGATGTATTTGATTATTGAAGAATCTTTATCTTTGGTGCAGTTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAGGTGATTACTGAGGATCTCAATATTTACATCTTTTTCACCGATAAATATCTAATCTCGAGTATTTGAATGGTGAAGTATAAAACCTATCCTCAAATAGGAATATAACTGATAATCCATCCTCTATCTACCCTTTTTCGTTGGAAGGTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAGGTACATATTTCTGAAAAATTTTGCTGTCCTGAGTCTCCCCTTTCTCTCTTTTTTGTCAAATTTTCTATGTATAATCCTCTTTTAACGAAAAATGTAGCAGGCCTTAACTGCCTATATATGCTGTTACAGGAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCAGTATGGGCATTTTCAAACTCGTCTCTTGTGACTTTTGAGTATTCTTAAATATTTTAAGGTGGTTGTCTCCAATTTCAGATTATTGATTCTGAATTTATGCTGTAGGTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAGGTAAATAAGTATATGCCAGATTTCCGTCCATCGAGCTGGTTCAATGTTATGCCTCTACTAAGTATTGTTTTCTTTTGTGTTGCACTATTTTCTTTTTGCTTTCTAAGTTTTGGCATTTTCTAACTGTTAGCTTTTACCTTGCTGGAATGGTTCTCGATTCTCAAGTGGACAACTCATACTTCAAATTTTAGATTTGTCATTTCGGGTTGTTAGCCATTTTAGTAGTTGCAATTTTACATTTACTTAAGTTAGTAGTCAAAAATTTAGCAATTTTACATTTTCCCACAAATTGTCCAAACATTGGCTAAATTTCTGACCATCTTTTTGTTCCGTTAAGCCACTGTTGGACAGTTTGGGTCGAAGTGGCCGATGGTTAACAAAGCCAAGCTTGGCTTGGTTTAAGCTTGATTATGATTGCGTTTAGGTGTCCCGCATATTCAAACCTAGCACAAATGTCCCTACCAAAAGCTCGAGTTGACAGATGCTAGCTTGTGAGCCCAGTTAAGTTGGCAGTGTTCTTTTCACTTAACCATTACACATCCGGTAAAATAAGATTTTGCTACCCGGATCATTTAATAGTCCTATGGAAACTCTTTTCATTCTAGTTGTGTGCTCCTCCTCCTTCCTCATTCTTGTGAACAGCCTTCTGCTTCCTGCCTGTGACAATACAGGTGCAGCCATTATCATGAGACACCAATTGATCTCTCTATCTCTGTTATTTTTTGTCCAATTTCTATTTCAGTTTGAATAGCTTATGTTTTGCTTTTCAATATTTTTCCCTTGCAGAAAGAAATTGCATTATACACTGCATCAAAGATGAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAGGTAATGTCTAAAAAGAGAATATATTGCTTGGTTATTTTTTGATACACTCATTAAAAACAACACGGAATATTCTGGTAGCCTCTGTACCGCCTCTTTCTGAGAGAATTGGGAAAAGGAATGAAGTTTGAAGTTATAGCAAAAAGTACTATCTGGTGGGAATTACGCAGAACTTTGAAGGTTAGCAGAGAATTTGGAGAATGAATGAAGTTTAAAGAAATAAGGCCTCACTGATTCAATTTGAATTCGATTATAAGCTTACCTGAAGAATTTGACCGTGAAATCACTACAACTCTGTCAAAGTAATTGGACATTTTACCATATCTTTTAACATGCTCATACTCTATTATGTAGAGTTATCCCTTTTAGGCTTCAAAACCTTCTTTAGAGCCCCCATCATTTCCTTAACCCCCACTAAATGGTTGGAAAGTGATCTCTTCTCAACCAATAGTCTCATAAGATTGCTACAACAGTTTCATTGCTCAATTACTTTATCATGAGTAGAGTGGCAATGGATACAAGGACTATCTAGAAACGTAAAGGTTGCTTTCACTGAGTTGCTGCTGCAGACATTGCTTGCACTTTAAGTATGTGCTTTATTTGGTGCATATGTTCCTTCATAGTTAGTTGTCAATGTTCTTTTGCTGATCCATGTCGAATGGGTGTGCGGAGTCTGGAAAATACTAAACGTTCTGAAAAAGTCACAGGTACCCATATGGATAGGACAAAGTTACTGGTTCCAGTTAGGTAGATAATCAATGAAGGTACAACATGCATATACCAGTGATAGTTTTCTGGAATGATGTGTAGTCTCCAGTTCATAAACCTAACAGTGCTTTAATCACTTTTATGCACCTGGAGGGTCCAGGGTGATACCTTTACAAAGTGAACTGTCATGGGAAAACCTTTGATTTCAAATGATGGTTTCTTGACAGATATGTGGGATCATTTCATTAATTTTAGGGGCTAATAATCAGTTTTTGTAAATCTCGGATCTAAAGTGGTAGATACCTCTATGAAGTGAACTGTCATCTGAAAAGTGCTTTTGTTGGCAGTGAATTTCTTATCTCAAAGTTATTATTTCCATTGACTTCGTGTTCTTATACTTCGTTCTCAATTCCTACTTTTTTTTCCCTTCTGTTCTCAGGAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGGAAGCAAAGAAAGCAAGAATTTACTTTCACC</genome_strand>
        <mrna_strand>GAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG................................................................................................................................................GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG.................................................................................................................................GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCA.........................................................................................................GTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAATTGCATTATACACTGCATCAAAGATGAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGGAAGCAAAGAAAGCAAGAATTTACTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269004" ref_strand="+" ref_description="SGN-E269004 [cLEI-16-K4]">
      <seq>aattacagacttgaccaaagcgttggaatttgagccagactctgccgatctattacatgaaagaggaattgtcaattttaagtttaaagatttcaaaggtgctgttgaagacctctctacatgtgtaaagtccgataaggataataaatctgcgtatacatatttgggtttggcgttatactctctaggagaatataggaaggctgaggaggcacataagaaagcaatccaaattgaaaggaatttcctcgaggcttgggctcatctagcacagttttatcaagacctagcaaactcagagaaggccttggaatgccttcatcagattttgcaaatagatgggaggtacgcgaaagcatatcacctgcgcgggctgctacttcatggaatgggagagcataggaatgctataaaagatttatcaatggggttggctattgatagcgcaaacattgaatgcttgtatctacgagcttcttgctatcatgctattggattatataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="40925" stop="38475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40625" g_stop="40561" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40560" i_stop="40242" i_length="319">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40241" g_stop="40141" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="166" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40140" i_stop="40008" i_length="133">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40007" g_stop="39900" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39899" i_stop="39281" i_length="619">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39280" g_stop="39210" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="345" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39209" i_stop="39066" i_length="144">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39065" g_stop="39009" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="402" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39008" i_stop="38880" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38879" g_stop="38775" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="507" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E269004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40625" e_stop="40561"/>
          <exon e_start="40241" e_stop="40141"/>
          <exon e_start="40007" e_stop="39900"/>
          <exon e_start="39280" e_stop="39210"/>
          <exon e_start="39065" e_stop="39009"/>
          <exon e_start="38879" e_stop="38775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAGGTGACGAGACTGAACTCTTCCATTTACTATGAACAATTGGATTTATGCTGTTAAAGTAGATAGACATAAATAGCAAAACATACATTTTATGACAGATAGCTTTTGTGCATGTAATTTGAAACTAAGGTTCACTTTCATCTTTACAACACTGAGATTATTTATTGAGGCCCATAGGTGGTTTCATCTTGTAACTATTTTGCAATAAATGACCTCTAGCGGAATATTCCATAATTTCTTGAGATTTCAGAAAAGATCATTTGATTGGACAAAGTTTGTTCAATCTAACCTGGGAGTCACTAACTCTCCTTAATTAGTGCAGGAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTGGTGAGTCTATGACCTTGAGTCTACCAATTGTTGTAGAATGAGCTAAGAATGTTTATCCGCAAAAGTTTGAGAAATTTTTTGTTGGAAAAATACTGATATAATGCTGGTCGAAAAAAATTTGGAAAATTATCAGGGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAGGTATCTCTGAATATATGGTGAATACTCTTAATGCTATTTTTCCTGCCAAGTGGGATCCCAATACTTCTATTGGTAGTGCTGATGATATAGAGTTTCTTGATGATGAAGTTGCCTTTTGACTTCGAGAATTTTCTTATACCAAGTTCTTGTTTTTGTTTGTCTCTTTTTTCACCGGTATCTGGAACTCAAGGTTGAGGTAAATATATACTTCTGCATGCAAGTTAAGAAATTCAAGAATAAGGATTTAAATGGCAAGTAGACATTCTATTGCTTAACCAGTGATGAAGAGCCTAACTCTCTGTTATCAGATATTGTGTGAGCGTTCATCTTCTGGGGTGCAATGCACATGTATTGTAATAGCTTTTGCCTTGTTGCATTTTCAGATAAGGTCTCCTGATTAGCTGGTAGATGTTATTAATTTACATCATCAAATTGGATGTTTATGGAATATCTATTGCCATAAGTTTAAAATTCCTAAGACTCAGGAGCTGCTCTAACCTAGTTCTTGATTGGTTGAGTTTCTTCACTTATATTAAATGTGGCAAAACAATGAGATCTCTTTGAAGATATTTTTTTAATGATGTATTTGATTATTGAAGAATCTTTATCTTTGGTGCAGTTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAGGTGATTACTGAGGATCTCAATATTTACATCTTTTTCACCGATAAATATCTAATCTCGAGTATTTGAATGGTGAAGTATAAAACCTATCCTCAAATAGGAATATAACTGATAATCCATCCTCTATCTACCCTTTTTCGTTGGAAGGTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAGGTACATATTTCTGAAAAATTTTGCTGTCCTGAGTCTCCCCTTTCTCTCTTTTTTGTCAAATTTTCTATGTATAATCCTCTTTTAACGAAAAATGTAGCAGGCCTTAACTGCCTATATATGCTGTTACAGGAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGA</genome_strand>
        <mrna_strand>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATCTATTACATGAAAGAG...............................................................................................................................................................................................................................................................................................................................GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTG.....................................................................................................................................GGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG................................................................................................................................................GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG.................................................................................................................................GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377069" ref_strand="+" ref_description="SGN-E377069 [TUS-21-E3](-)">
      <seq>cagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaattcctcaagtaataattccaaaaagcataagaagattgagtctgaatcaaaggaattgcatgagagacaagcaaataaaaccaacaacaattgcaaaaaattgggttatccatctctggtttgcagtgagttaagtgatatatctgaagacagtaggaaatcatctgcagtaactagtgaatcaagtgaacagtcagaaccaaatgagttgcaggaaattctcagtcagttgaataataaatgtgatgttcgcgttgaattgagtgatgaaggcaagagaaacaaaaaattttgtgttaccagggtcaacaaaaccaagtccattaacgttgatttccgattatcaaggggaatagcacaggtactgggataccatgctcatgcatagcaggaaaggccttctactgcagtcttcatgtcttttctgttcactttgcttatttcagttgtaatttggtgattacactccacttttaattttgtgaacttaactggaagattctgcatatgttcaaagcttgggtcaactaagctctattattagaattcattttcttcagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="46365" stop="44784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46065" g_stop="45521" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45520" i_stop="45286" i_length="235">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45285" g_stop="45083" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="748" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E377069" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46065" e_stop="45521"/>
          <exon e_start="45285" e_stop="45083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAGGTACACTGCCTATCCTGTGATATTACAATGAAGACAGGAAGAATTAGTCCATCTATTGATATTTCCTGTTAGTGCGGTTGATCATTAATATGCTATTCTTCTTTATTGAAATACAAATAACAATACATTTGTAACTTCAAATATATGCCAAAGATCAACTTCATGTCTCAATTTGTGAGATTATTTTCTCTCAAATTAAGTAGAGAAATGAATTTTTTCTTGATATATCTGCTAGGTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</genome_strand>
        <mrna_strand>CAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG...........................................................................................................................................................................................................................................GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367836" ref_strand="+" ref_description="SGN-E367836 [TUS-22-I11](-)">
      <seq>agttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaattcctcaagtaataattccaaaaagcataagaagattgagtctgaatcaaaggaattgcatgagagacaagcaaataaaaccaacaacaattgcaaaaaattgggttatccatctctggtttgcagtgagttaagtgatatatctgaagacagtaggaaatcatctgcagtaactagtgaatcaagtgaacagtcagaaccaaatgagttgcaggaaattctcagtcagttgaataataaatgtgatgttcgcgttgaattgagtgatgaaggcaagagaaacaaaaaattttgtgttaccagggtcaacaaaaccaagtccattaacgttgatttccgattatcaaggggaatagcacaggtactgggataccatgctcatgcatagcaggaaaggccttctactgcagtcttcatgtcttttctgttcactttgcttatttcagttgtaatttggtgattacactccacttttaattttgtgaacttaactggaagattctgcatatgttcaaagcttgggtcaactaagctctattattagaattcattttcttcagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="46364" stop="44784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46064" g_stop="45521" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45520" i_stop="45286" i_length="235">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45285" g_stop="45083" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="747" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E367836" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46064" e_stop="45521"/>
          <exon e_start="45285" e_stop="45083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAGGTACACTGCCTATCCTGTGATATTACAATGAAGACAGGAAGAATTAGTCCATCTATTGATATTTCCTGTTAGTGCGGTTGATCATTAATATGCTATTCTTCTTTATTGAAATACAAATAACAATACATTTGTAACTTCAAATATATGCCAAAGATCAACTTCATGTCTCAATTTGTGAGATTATTTTCTCTCAAATTAAGTAGAGAAATGAATTTTTTCTTGATATATCTGCTAGGTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</genome_strand>
        <mrna_strand>AGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG...........................................................................................................................................................................................................................................GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735876" ref_strand="+" ref_description="SGN-E735876 [LC03CA02]">
      <seq>accacgcataaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctgagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggccctcgatagggaacttaaaacatgccacaatgggatgttggaaagctctgaaaaatcaaagaatacctctgttttacaaaattcctcaagtaataattcccaaaaacataagaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47918" stop="45543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47619" g_stop="47352" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="377" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="45843" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="744" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E735876" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47619" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="45843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGA</genome_strand>
        <mrna_strand>ACCACGCATA-AAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTGAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCCTCGATAGGGAACTTAAAACATGCCACAATGGGATGTTGGAAAGCTCTGAAAAATCAAAGAATACCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCCAAAAACATAAGAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367837" ref_strand="+" ref_description="SGN-E367837 [TUS-22-I11]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgttggaaagctctgagaaatcaaagaatagctctgttttacaaaaattctcaagtaataattccaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="45856" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="722" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E367837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="45856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAAATTCTCAAGTAATAATTCCAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377070" ref_strand="+" ref_description="SGN-E377070 [TUS-21-E3]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaatcattcggtgcagtcatctggccctgagtccaacactggacctcctctttctaccaaatctggtgaaacttgtgatattagtaaggcctcagatagggaacttaaaacatgcagcagtgggatgtttggaagctctgagaaatcaaagaatagctctgttttacaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="45880" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="698" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E377070" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="45880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTTGGAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242746" ref_strand="+" ref_description="SGN-E242746 [cLED-31-E24]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcanttggcagcaacaatcattcggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46038" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="540" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E242746" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCA</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCANTTGGCAGCAACAATCATTCGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366737" ref_strand="+" ref_description="SGN-E366737 [cLPT-17-O6]">
      <seq>acacacccaccaaaaaaaaaagaaaaacagttttaaaagccgcaagatcagaaattcagaagctcacaacacaactgaaaggaaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtccaaagcaatacgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctattctaatttgggagcaagggtatgaacatgcagttcatcagtctgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgcaaagcagaacaccgcagttggcagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47907" stop="45749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47620" g_stop="47352" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="374" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46049" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="535" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E366737" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47620" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTT-ACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAAT</genome_strand>
        <mrna_strand>ACACACCCACCAAAA--AAAA-AAGAAAAACAGTTTTAAAAGCCGCAAGATCAGAAATTCAGAAGCTCACAACACAACTGAAAGG--AAAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCCAAAGCAATACGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTATTCTAATTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCTGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228271" ref_strand="+" ref_description="SGN-E228271 [cLED-2-H2]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgcagttcatcagtccgcagacttaaagcaactgttagagcttgaagagctgctcaaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46080" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="498" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E228271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242990" ref_strand="+" ref_description="SGN-E242990 [cLED-31-N4]">
      <seq>aaaagaccaaaaagaaagacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcggattctcgattgtattcttgctcaaacttgcctcattcaagatatctgcaaccgagcgtttagctatagtcaataggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46140" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="438" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E242990" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGC</genome_strand>
        <mrna_strand>AAAAGACCAAAAAGAAAGACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGGATTCTCGATTGTATTCTTGCTCAAACTTGCCTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTAGCTATAGTCAATAGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237610" ref_strand="+" ref_description="SGN-E237610 [cLED-19-E5]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="436" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E237610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240254" ref_strand="+" ref_description="SGN-E240254 [cLED-25-N15]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattcaaaggacgtgcattatctgctcttggtaagaaagaggaagctcttctagtttgggagcaagggtatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="45841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="368" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46209" g_stop="46142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="436" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E240254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
          <exon e_start="46209" e_stop="46142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAGGTTCTTTTCATTTTCTCCTTGCATTTCCAGCTAACTGTTTTTACCGTGTATAAGAAATGCGAAAGAGAATTTAGAAGTTTTCAATTGCATTTGGAATGTCAATTTTGAATGTGGATGTGTTGTGGTCAGGCATCCTAATCCCTATAGGCCTGTGAAGTCATCTGGGATACTCTAAATTTACAATTTTAGGGTTCTTGTTCAAATTTAGGTGATTGGCTATAATTGAGTAAATTTTTCTGGTTTTGGACAAACATGAACCATTGGTAATTTCGAGGAGTAGGATGAAGCTCTTGTAAAGCTAGTGAACTGTTGCACCTCTCGGTTGATGTCCTACAATTTACGACTATTGTCAAGTATGCGCCAAAATAAGGGTTAGCTTTAAATGAATTGTGTATGTGAGAAGCCATTTTAAGCTTGATAAAGGTCATATTGGACTTGCTTTCTGTATCCTATAGTGGTCTTATATTATATTTTTGAAATGACTTTTAACTTTAAAATAAACTATGTTTGGTTGGGGTATAAAGGGAAGGGATGGAAAATAAAGGAGGGCATAAGATGGTTGAATTCTATGCTCGCGGGGTACAGTAGAGGGTTTGACCATATTGTGTCTATTGTTAAGTACCTTTTCTCTAAAAGGCTATTTCCACGGCATGAACGTGTGACCTCCTTGTATCATTGCAACAACTCCGATCAGATAAAAAGATCAAATACATTTTTGTCTCTTGTGTGTAACATAGCCCTTGAAATAATGATATAAGAATTTGAATTAACAATATTCTTGTGTGGATACTGTGGATTTTCCCTAGATGTGGTTATAGTTTATGCTGCAGAAATTTCAATATTCTTAAAGCTTTACAAACTGGATTTTTGAGTTTGAAGCATTATGTAACAAAGTTACTTGATACTTGTTGCTTAGGACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366736" ref_strand="+" ref_description="SGN-E366736 [cLPT-17-O2]">
      <seq>cacccaccaaaaaaaaaagaaaaacagttttaaaagccgcaagatcagaaattcataagctcacaacacaactgaaaggaaaaaaataaaaatcaatcgcatcaattgagctgcttccgatccatttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaagagtggtccaaagcaatacgaattctcgattcacttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgtttttaaggattgtgataaggcacttcaactcgatcctaagctttttcaagcttatatattcaaaggacgtgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47907" stop="46825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47614" g_stop="47352" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47126" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="371" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E366736" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47614" e_stop="47352"/>
          <exon e_start="47235" e_stop="47126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGAAAAAAAAGAAAAACAGTTTT-ACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG</genome_strand>
        <mrna_strand>CACCCACCAAAAAAAAAAGAAAAACAGTTTTAAAAGCCGCAAGATCAGAAATTCATAAGCTCACAACACAACTGAAAGG--AAAAAAAT-AAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCATTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAAGAGTGGTCCAAAGCAATACGAATTCTCGATTCACTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTTTTAAGGATTGTGATAAGGCACTTCAACTCGATCCTAAGCTTTTTCAAGCTTATATATTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239468" ref_strand="+" ref_description="SGN-E239468 [cLED-23-J13]">
      <seq>aaaagaaaaaaaagaaaaacagttttacagccgcaagatcagaagttcagaagctcacaacacaactgaaaggaaaaaaaaataaaaaatcaatcgcatcaattgagctgcttccgatccacttgagccgccggcgatggcgtcgaaagttactgataggattgaactagctaagctttgtagctctaaggagtggtcgaaagcaattcgaattctcgattctcttcttgctcaaacttgcgtcattcaagatatctgcaaccgagcgttttgctatagtcaattggagcttcacaagcatgttattaaggattgtgataaggcacttcagctcgatcctaagcttcttcaagcttatatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="47909" stop="46830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47609" g_stop="47352" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47235" g_stop="47130" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="364" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E239468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47609" e_stop="47352"/>
          <exon e_start="47235" e_stop="47130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTGGTCCGTTACGTTTTTCACTGTTCCATCTTTTTCCCTGTTTGTATATAGGTTTTTGGACATTTATGAATGAACTGATTAATTTTTCTGAATTTAAAATGTGTTCAATTCTTTTTCAGCAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTC</genome_strand>
        <mrna_strand>AAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG....................................................................................................................CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="56116" stop="57011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56416" g_stop="56737" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56416" e_stop="56737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="56116" stop="57011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56416" g_stop="56706" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56416" e_stop="56706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="56116" stop="56866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56416" g_stop="56566" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56416" e_stop="56566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="56117" stop="57162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56417" g_stop="56863" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56417" e_stop="56863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGACAAATTTTAGTTAATGTTTGCTATGGAGCACAATTGAATCAAACCCTAGCTATTTTATTTAATTTAGGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732690" ref_strand="+" ref_description="SGN-E732690 [LB02DE03]">
      <seq>ctcttctataacgtcacatgatttcttttcttaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaggcattatctgtcccgtgttactgtcccttgccatatcatacagagctcaatggatgttgcaatgccagtgactgtttctgaatatttacacagaaatttaggcggaaaatcgatcgtagagatcatctcaacagaaggtcatcttccacatttgagcgcacctgaggctactatccccgtattgcttcgacacatttcacatgatattactgctgatgcttcttctagttaaaggataatgaaaaaaacttcttcaaaagtactcatcatcaaaataaatatacatgtgtatttctattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="59828" stop="58668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59528" g_stop="58971" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="571"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E732690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59528" e_stop="58971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</genome_strand>
        <mrna_strand>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700812" ref_strand="+" ref_description="SGN-E700812 [FA14BA01]">
      <seq>gtgaactctaaaattaacagccaccggccaatccatcttccttcgtaccaaaaagtcggctggtcgtctcctccaatttccacaccacaccttaataaagtctaaaaattgggaaacaaaaaactcagaccaaaaaatgggaatcggtgaagaagctcacaacgtaaaagttgtaggttcaggcgaaaagaccatcgtactgggtcatggcttcggcaccgatcagtctgtttggaaacagcttgttccttacctcgttgatgaatatcgtgttgtactttatgataatatgggtgctggaccgacaaatcctgattacttcgattttgatcgatattcttcccttgaaggttatgcgtacgatttaatttccattttggaggaacttcaaatcaatcgttgcatgtacttaggccattccttatcggctatgactggtgttgttgcttctatttttcgtcccgatctcttttccaaactcattcttgtatcagcttccccaaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaggcattatctgtcccgtgttactgtcccttgccatatcatacagagctcaatggatgttgcaatgccagtgactgtttctgaatatttacacagaaatttaagcggaaaatcgatcgtagagatcatctcaacagaaggtcatcttccacatttgagcgcaccctgagctactatccccgtattgcttcgacacatttcacatgatattactgctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="60706" stop="58748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60406" g_stop="59904" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59903" i_stop="59495" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59494" g_stop="59048" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="951" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E700812" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60406" e_stop="59904"/>
          <exon e_start="59494" e_stop="59048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAC-CTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAGGTGAGATAAATTGATATGTCAATTTATTTGTCTAATGAAACTTTTAAATATTTCTGTATTTAACTAAAAAACAAGAAAAGTGTTAATTAAAATGCTCGTTTAACACAAATAAATTAGAAGGAAGATGTACGTAGCATTTCCCTCTTAAACGTATTTACGATTCAGATATTTTAAATCAATCTCCTCCGTTTCTTTTGATCTTATCTAAAAAGAATCACACAACTTTTCTTTTCTTTTTTTTAAAAAAAATTCAACTTTTTTTGCCAATCACATGAATTTTCTTTTGATATTATGAAGAATTTTGCAATACTTACCATCCACCCAACACCAATAAAATTGGATTGAACGTAACCTCTGTTAACTATCCGAGCAACTCTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</genome_strand>
        <mrna_strand>GTGAACTCTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAAGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCCTGAGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329412" ref_strand="+" ref_description="SGN-E329412 [cTOD-2-L8]">
      <seq>ggaatcggtgaagaatctcacaacgtaaaagttgtaggttcaggcgaaaagaccatcgtactgggtcatggcttcggcaccgatcagtctgtttggaaacagcttgttccttacctcgttgatgaatatcgtgttgtactttatgataatatgggtgctggaccgacaaatcctgattacttcgattttgatcgatattcttcccttgaaggttatgcgtacgatttaatttccattttggaggaacttcaaatcaatcgttgcatgtacttaggccattccttatcggctatgactggtgttgttgcttctatttttcgtcccgatctcttttccaaactcattcttgtatcagcttccccaaggttcataaatacggatgactattatggaggattcgaatcggaagacatagaacaactatgtcaagcaatggagtcgaactacaaggcatgggtatctggttttgcgccactagcggtgggaggtgacatgaattccgtggcagtacaagaattcagcaggacattattcaacatgagaccagacatagcactcagtgttttccgcactgttttcacgttcgacctaaagcattatctgtcccgtgttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="60568" stop="58943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60268" g_stop="59904" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59903" i_stop="59495" i_length="409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59494" g_stop="59243" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="617" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E329412" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60268" e_stop="59904"/>
          <exon e_start="59494" e_stop="59243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAGGTGAGATAAATTGATATGTCAATTTATTTGTCTAATGAAACTTTTAAATATTTCTGTATTTAACTAAAAAACAAGAAAAGTGTTAATTAAAATGCTCGTTTAACACAAATAAATTAGAAGGAAGATGTACGTAGCATTTCCCTCTTAAACGTATTTACGATTCAGATATTTTAAATCAATCTCCTCCGTTTCTTTTGATCTTATCTAAAAAGAATCACACAACTTTTCTTTTCTTTTTTTTAAAAAAAATTCAACTTTTTTTGCCAATCACATGAATTTTCTTTTGATATTATGAAGAATTTTGCAATACTTACCATCCACCCAACACCAATAAAATTGGATTGAACGTAACCTCTGTTAACTATCCGAGCAACTCTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGT</genome_strand>
        <mrna_strand>GGAATCGGTGAAGAATCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAAGCATTATCTGTCCCGTGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732249" ref_strand="+" ref_description="SGN-E732249 [LB01CF10]">
      <seq>cgtttaagagggacatgctacgtacatcttccttctaatttatttgtgttaaacgagcattttaattaacacttttcttgttttttagttaaatacagaaatatttaaaagtttcattagacaaataaattgacatatcaatttatctcaccttggggaagctgatacaagaatgagtttggaaaagagatcgggacgaaaaatagaagcaacaacaccagtcatagccgataaggaatggcctaagtacatgcaacgattgatttgaagttcctccaaaatggaaattaaatcgtacgcataaccttcaagggaagaatatcgatcaaaatcgaagtaatcaggatttgtcggtccagcacccatattatcataaagtacaacacgatattcatcaacgaggtaaggaacaagctgtttccaaacagactgatcggtgccgaagccatgacccagtacgatggtcttttcgcctgaacctacaacttttacgttgtgagcttcttcaccgattcccattttttggtctgagttttttgtttcccaatttttagactttattaaggtgtggtgtggaaattggaggagacgaccagccgactttttggtacgaaggaagatggattggccggtggctgttaattttaggttcacaaatcataacattagtattgcaagagtgctaattaatggaagggtttttatggttatcaagttattgaaatactttagtaaagttactttatctgttttatgctaaaataaaagtcacacatattttttactataataaaatattaataacttctaccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="59453" stop="60878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59753" g_stop="60577" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E732249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59753" e_stop="60577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</genome_strand>
        <mrna_strand>CGTTTAAGAGGGACATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733260" ref_strand="+" ref_description="SGN-E733260 [LB04BF04]">
      <seq>cgcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaattaagggtataattcaggtttctagatcaattggtgatgtctatctgaagaaacctgagtttaatagagatcctatgttcatacaatatggatatcctattcctttaaaaagagctgtaatgtcagcagagccctccatattgatccgaaagataagaccagaagacttatttttgatatttgcatcggatggcctatgggatcaactaaccgatgacgaagctaaggatattgttttgaagaatcctagaattggaatagcaaaacgattagtgagagctgcccttgagggtgctgcagagaagaaagaaatgagatatgaggacatcaaacgactagagaagggggaaaggcggcacgttcatgatgatatcacagttattgtgatatatttggatcaccctggaaggtcctcaaattctggaattaacattgttaagggcacgaatgtccctcttgacatatactccttgaactcgggtcattaaggagagaacatatcttatgtttccccatgaaaagtgtctaatacatgtatacattatatataccattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="64326" stop="61415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64028" g_stop="63773" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63772" i_stop="62470" i_length="1303">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62469" g_stop="62233" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="493" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="62025" i_length="208">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62024" g_stop="61709" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="809" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E733260" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64028" e_stop="63773"/>
          <exon e_start="62469" e_stop="62233"/>
          <exon e_start="62024" e_stop="61709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAGGTATCTGTTCTCAATCCTCTTTTCTTCTGTCCTATTAATGCAGTCGACAGTTTTGATTAGACATTTAACCATTCAAGGTTATTAAATTTGTTTACTAGCCTTCATGATATTCAGTAGAATTAATACATCTTTTCAGACCTGCAGCCATGATGAATCAGACCTCCACTTGAAGAAAGCTAATTAGTCCTTTCTGAAATGCGGTTTTGTTATGACTAGGTGGCGTCTGAGAATGTTAATAGTTTCTATTCAATCTAAAGTACATATGGTGGAAGGAGAAAATAGTCAGAGCTCTTTCATTCTCAATTCTGACTTCCGTTAAGTTTACAGTGGTCCATCTGTTGTTACCTCTTAGCTGTCTAGATACGCTAATGTTCTGAAAGTAAGAAAGTTATGGAAGCTAGACAACAAAGAAGACCTAAGTCTTTTTTTTCTGATCTCTGGTTTGTCGTCACACACAAATACAAAGATTCATATTTATGTAGTTAGAAACAATTCGCCTTTCTGTTGCTCGAGCATGTTATGAAGGTGGTCCAAAATCTCCGGGAACTCATACTTGAGGCTTCTAAATAAGTCACTTTATATATGCTAATTATGTGTGTGCACTCATAGCAAGTTGATCATACCTTTTAGACGTGGTGTATGTCAAGTCTTTCTGGGGTGCCTCTTTTGTGTGTTGGCATAAAGTATGCTTTCATCTACTTTTTCTGAGGTTATAGACCGTATGTTTAAATTTTGTCCTTTTAGCTTCTTAGCCAATCACATTATAATTTATACCCTTGTCAAAAAAAAACATGTCACTTCATATGTTGATTATGTAGATTTGTGTGTCTAGTTCTTTTGGAGAATAAACATCTTTTTATCTTCTACTTTTTAAGATTTTAGACCTTGTGTATAAGCAATTTCTCCTTTTCAATCTAGTAAAAGACACATCAGTGTCAAGATTTACAAGTTTGCACCTATGGGATTCACATCAAGGCAAAAACATTTTGTTGCATGTGAAGTAATTTTGTTTTACGCATGGACACAAAGGAATGTCCTTTCCCGTTTATCCCTTCGCTCTTAACCACTTACTAGCAATCTTTTATCTTTTGGTAACTACAATTTGTAGCAGCGGCTGCATGATACTTATCTTTCCATCTGTATCCTTCATTTTAACTTCAGCAAGGTTCCCTTGTTATATGAAAAATGCCAAATAAAGTCTGAAGCTGACTGTTTTCGTTAAAAGCTTGCAAGCAGCCAATATCAGGGAGCAATCCTATGTTTTGAGAAAATCCATCTCATATTGCCTATTTATCTGTACCAGGTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATTGTGAGTATCGACCCCTCCTATTCTATCACATTCTTTAATTTTTGGAAACAGTACGTACCCTCATCCATTTTGTTATCTGTAAAGTGGATGCAGGCTCTTATGATAACTAGACTCTCCTTGAAGTAATTTTGTGATCAAACTTCTCCTTCATGTTGGGCATAATTAACTAATGAATAAGATAACTGTGTTTTCTTCCTCATTTCTCCAGGGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGT</genome_strand>
        <mrna_strand>CGCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT................................................................................................................................................................................................................GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204684" ref_strand="+" ref_description="SGN-E204684 [cLEC-14-H3]">
      <seq>tggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65006" stop="63489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64706" g_stop="64523" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64522" i_stop="64156" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64155" g_stop="63789" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="550" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E204684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64706" e_stop="64523"/>
          <exon e_start="64155" e_stop="63789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</genome_strand>
        <mrna_strand>TGGA-CTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335131" ref_strand="+" ref_description="SGN-E335131 [cTOE-1-G6]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65133" stop="63571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64834" g_stop="64523" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64522" i_stop="64156" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64155" g_stop="63871" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="595" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E335131" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64834" e_stop="64523"/>
          <exon e_start="64155" e_stop="63871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGAGCTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGA-CTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336900" ref_strand="+" ref_description="SGN-E336900 [cTOE-5-N7]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65133" stop="63780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64834" g_stop="64523" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64522" i_stop="64156" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64155" g_stop="64080" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="386" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E336900" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64834" e_stop="64523"/>
          <exon e_start="64155" e_stop="64080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGAGCTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGA-CTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213290" ref_strand="+" ref_description="SGN-E213290 [cLEC-71-C16]">
      <seq>cattttctctgaaaaacaagagagtgacttttatgtatatgtaatacgaagatgaagagctgtaatatcaatggctactggtttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgntgtagtacatcatgccctagctactggtggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65341" stop="66612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65641" g_stop="66312" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E213290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65641" e_stop="66312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</genome_strand>
        <mrna_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAG-AAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGNTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395611" ref_strand="+" ref_description="SGN-E395611 [TUS-16-H20]">
      <seq>ttttttccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcataagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgttgtagtacatcatgccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactcctgccaatagatggatcatggatagccgtggtgaacctactctggaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65422" stop="68067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65722" g_stop="66352" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="67767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="672" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E395611" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65722" e_stop="66352"/>
          <exon e_start="67726" e_stop="67767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCT</genome_strand>
        <mrna_strand>TTTTTTCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCATAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCC-TGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGGTGAACCTACTCTGGAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336719" ref_strand="+" ref_description="SGN-E336719 [cTOE-5-K6]">
      <seq>tttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttggttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcaggataagtctattgagccttggctgaagagaaaaacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65422" stop="66487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65722" g_stop="66189" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E336719" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65722" e_stop="66189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTG</genome_strand>
        <mrna_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGGTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGGATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205909" ref_strand="+" ref_description="SGN-E205909 [cLEC-20-L4]">
      <seq>ttaatccgacgagctatttatagggttcagtcatcttcggcggcngcgaggctacttgttgcccgagctgacgcttccgacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65423" stop="66500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65723" g_stop="66200" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E205909" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65723" e_stop="66200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</genome_strand>
        <mrna_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGGCGGCNGCGAGGCTACTTGTTGCCCGAGCTGACGCTTCCGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240649" ref_strand="+" ref_description="SGN-E240649 [cLED-21-P12]">
      <seq>tcaaatcatttcaaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgtgaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65527" stop="66600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65827" g_stop="66300" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E240649" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65827" e_stop="66300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACT</genome_strand>
        <mrna_strand>TCAAATCATTTCAAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGTGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253795" ref_strand="+" ref_description="SGN-E253795 [cLEG-28-A12]">
      <seq>aaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65539" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65839" g_stop="66352" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="67830" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="619" r_length="105" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E253795" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65839" e_stop="66352"/>
          <exon e_start="67726" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGC</genome_strand>
        <mrna_strand>AAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277000" ref_strand="+" ref_description="SGN-E277000 [cLEN-22-F18]">
      <seq>tcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgcttgcccaaagggattaaatcccgggaagcatattcagaacatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65581" stop="68159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65881" g_stop="66352" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="67857" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="604" r_length="132" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E277000" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65881" e_stop="66352"/>
          <exon e_start="67726" e_stop="67857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAA</genome_strand>
        <mrna_strand>TCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGCTTGCCCAAAGGGATTAAATCCCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237584" ref_strand="+" ref_description="SGN-E237584 [cLED-19-L16]">
      <seq>caaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65591" stop="68070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65891" g_stop="66352" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="67771" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="508" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E237584" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65891" e_stop="66352"/>
          <exon e_start="67726" e_stop="67771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGAC</genome_strand>
        <mrna_strand>CAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747600" ref_strand="+" ref_description="SGN-E747600 [GI|5669040]">
      <seq>gcacgagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtccgctgcactcctgccatgccaaccgatggatcatggatagccgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65920" stop="68050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66220" g_stop="66352" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="67750" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="158" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E747600" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66220" e_stop="66352"/>
          <exon e_start="67726" e_stop="67750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACT-CCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAA</genome_strand>
        <mrna_strand>GCACGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCC-GCTGCACTCCTGCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395610" ref_strand="+" ref_description="SGN-E395610 [TUS-16-H20](-)">
      <seq>gccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactccatgccaatagatggatcatggatagccgtgatgaacatactctggagcgcctggacgcagttaatgatgaattcaagctttatcgctgccacactattttgaactgttctcgtgcttgcccaaagggatttaatcctggcaagctcagaacatcaagcgcctggagatggcgccttgagcctgcactctgcagtgtagtgtaccagtctattctgctaacattgattttggaggaccagtaggaggtagttctcaaaataatttatgcacagatcgtaatttgctttctgagatttttttttggtgctagggtgttgcccttccccgagccctgtgtgaatatgggattcttttgtgcaccgtgctgccttattcgagatgaaaggtgcatctcacctgaaatattgtactaacaattagtatgatagctgaagtgaagcaaacatgtaatagcagagagtatatacaaatttatgaactgatttatcatagaaaataatgatttctataaatattcgtttgaaaatatacctcataaaaacttcatcaattatataaaacaaaatttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="65989" stop="68577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66289" g_stop="66352" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67726" g_stop="68299" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="638" r_length="574" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E395610" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66289" e_stop="66352"/>
          <exon e_start="67726" e_stop="68299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</genome_strand>
        <mrna_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAAATATACCTCATAAAAACTTCATCAATTATATAAAACAAAATTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371081" ref_strand="+" ref_description="SGN-E371081 [TUS-29-L17](-)">
      <seq>ctaaaattcgaaatcaatttcattctcatcctagtccaacacctcaggttcgattttctaaagttagttttcaatcaaatgtcaacaattccacacgaaaatcagcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagttgattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="70242" stop="68995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69942" g_stop="69288" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E371081" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69942" e_stop="69288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280332" ref_strand="+" ref_description="SGN-E280332 [cLER-1-O1](-)">
      <seq>agcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagtaaattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="70139" stop="68995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69839" g_stop="69288" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E280332" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69839" e_stop="69288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTAAATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333395" ref_strand="+" ref_description="SGN-E333395 [cTOD-20-D5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacgaaatatcagcctaaaattcgaaatcaatttcattctcatcctagtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="70801" stop="69604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70501" g_stop="69904" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E333395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70501" e_stop="69904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371082" ref_strand="+" ref_description="SGN-E371082 [TUS-29-L17]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttcccaagtagtaacagagaagcccaactttatttttctccgtaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="71001" stop="69670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70701" g_stop="69970" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E371082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70701" e_stop="69970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324153" ref_strand="+" ref_description="SGN-E324153 [cTOC-4-C10]">
      <seq>aatagtattcttgacttacaaacaaggaacgaacaattttgtattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaagcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="70810" stop="69780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70510" g_stop="70080" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E324153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70510" e_stop="70080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</genome_strand>
        <mrna_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTGTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAAGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333441" ref_strand="+" ref_description="SGN-E333441 [cTOD-20-E5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="70801" stop="69798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70501" g_stop="70098" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E333441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70501" e_stop="70098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280331" ref_strand="+" ref_description="SGN-E280331 [cLER-1-O1]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttaccaagtagtaacagagaagcccaactttatttttctccggaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagncaagaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="71001" stop="69894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70701" g_stop="70194" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E280331" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70701" e_stop="70194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAG-CAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTACCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGGAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGNCAAG-AAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714981" ref_strand="+" ref_description="SGN-E714981 [FB13AA03]">
      <seq>gaggattaatataacagagaggagaaagaaaagaaatggaaaagcaaagagatagtaataagggatgtatagatgagagaaaactagaaggattgccagtggatacaagtccatatacacagtataaggatttggaggattacaagcaacagggttatggaacacaaggccatcaacagcccaatcctgggcgtggtgctgccagttccaccgacgccccaaccctcgcaggtggtggatctgctgaagctcagctttctgctactgacaacatcaatcgccagggtgttccttaattaatttcgttaatttttagtcgcatttacaacagttattccttttttttacttgggtaaaatacgtatatgtagaataataacaataagaacgttctgaattagtgattctagatcttagattcgtccctgtttggtgttgtttgtatgttccttccgtcggcttgtaacttaataaatatatttttctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="74498" stop="73409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74202" g_stop="73703" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E714981" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74202" e_stop="73703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</genome_strand>
        <mrna_strand>GAGGATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280866" ref_strand="+" ref_description="SGN-E280866 [cLEL-6-C11](-)">
      <seq>aaaaaaggaataactgttgtaaatgcgactaaaaattaccgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggcaagccttctagttttctctcatctatacatcccttattactatctctttgcttatccatttcttttctttctcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="73559" stop="74484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73859" g_stop="74184" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E280866" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73859" e_stop="74184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTC</genome_strand>
        <mrna_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTACCGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAAGCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTATCCATTTCTTTTCTTTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280790" ref_strand="+" ref_description="SGN-E280790 [cLEL-6-D11](-)">
      <seq>aggaataactgttgtaaatgcgactaaaaattaacgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggggatccttctagttttctctcatctacacatcccttattactatctctttgaatttccatttcttttctttctcctcgtgccgaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="73564" stop="74488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73864" g_stop="74199" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E280790" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73864" e_stop="74199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</genome_strand>
        <mrna_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGGGATCCTTCTAGTTTTCTCTCATCTACACATCCCTTATTACTATCTCTTTGAATTTCCATTTCTTTTCTTTCTCCTC-GTGCCGAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349058" ref_strand="+" ref_description="SGN-E349058 [cTOS-2-A18]">
      <seq>tacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcatattgatctgtgtcagttaacccttaatacgttacttgagtcttggttgctcccattacccacaaagctcaccccatcttgcagtaaaaaagaagtctaattgtaatgaccgtgcgaatgttttgtaataggatcagatcacgtgtttcaaaagtgttgtactaacacaaatattattatgacgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="75216" stop="74225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74915" g_stop="74515" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="414" r_length="401" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E349058" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74915" e_stop="74515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</genome_strand>
        <mrna_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232181" ref_strand="+" ref_description="SGN-E232181 [cLEL-5-L2](-)">
      <seq>tcctttttgttatatttatctgatgtgaaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="76309" stop="74417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76009" g_stop="75950" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75949" i_stop="75861" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75860" g_stop="75741" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75740" i_stop="74916" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74915" g_stop="74718" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="378" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E232181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76009" e_stop="75950"/>
          <exon e_start="75860" e_stop="75741"/>
          <exon e_start="74915" e_stop="74718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>TCCTTTTTGTTATATTTATCTGATGTGAAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232681" ref_strand="+" ref_description="SGN-E232681 [cLEL-5-L2](-)">
      <seq>gatgttaattatgacttcccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="76145" stop="74417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75845" g_stop="75741" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75740" i_stop="74916" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74915" g_stop="74718" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="304" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="320"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E232681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75845" e_stop="75741"/>
          <exon e_start="74915" e_stop="74718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAATTATGACTT-CCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>GATGTTAATTATGACTTCCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234776" ref_strand="+" ref_description="SGN-E234776 [cLEL-6-A2](-)">
      <seq>aatggtacaattgatcggacatctcttcaggggagctgtgcagtaatccgaggttaaaaatgggttgccacaaagtggatcagggatcaacaaatggatggataaacgagtacatgtctggaagtggtgttaatataattcattcgtaatttaatgtagccacccactggaacctttgagcgaattttacagtaaatatatctagtgtttgttccaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="76058" stop="74417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75758" g_stop="75741" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75740" i_stop="74916" i_length="825">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74915" g_stop="74720" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="214" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="216" polyA_stop="237"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E234776" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75758" e_stop="75741"/>
          <exon e_start="74915" e_stop="74720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</genome_strand>
        <mrna_strand>AATGGTACAATTGATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCAGGGGAGCTGTGCAGTAATCCGAGGTTAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAACAAATGGATGGATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCATTCGTAATTTAATGTAGCCACCCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709282" ref_strand="+" ref_description="SGN-E709282 [FA51BA06]">
      <seq>cgggaagaagatgaagagcaaaggtagattagtgggacaaagatggcggagcatagggggcttaccttcaatatttctgctatgtcttttcttgttcttcgccggtttattcggttctactctcgtttctcatcaggatgtacaactacttactgtacggcctaggtcaagggtgcttaaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacactcccttacttccatccccttccaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactacagaacaatgccaaggcataattaagatggcaaaggcagaactgaaaccatcatctttggctctccgcaaaggagaaacagcagaaaataccaaaggagttagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagaggcatttaatgttttgcggtacgaaataggccagagttattattcacattatgatgcgtttgatccttctcaatatggtcctcagaagagccaaagggttgcatccctttttgttatatttatctgatgtggaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagagggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="80050" stop="75441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79750" g_stop="79615" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79614" i_stop="79545" i_length="70">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79544" g_stop="79428" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="253" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79427" i_stop="78541" i_length="887">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78540" g_stop="78383" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="411" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78382" i_stop="78019" i_length="364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78018" g_stop="77920" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="514" r_length="103" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77919" i_stop="76729" i_length="1191">
            <donor d_prob="0.977" d_score="0.87"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76728" g_stop="76633" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="610" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76632" i_stop="76016" i_length="617">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.383" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76015" g_stop="75950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="677" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75949" i_stop="75861" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75860" g_stop="75741" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="798" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E709282" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79750" e_stop="79615"/>
          <exon e_start="79544" e_stop="79428"/>
          <exon e_start="78540" e_stop="78383"/>
          <exon e_start="78018" e_stop="77920"/>
          <exon e_start="76728" e_stop="76633"/>
          <exon e_start="76015" e_stop="75950"/>
          <exon e_start="75860" e_stop="75741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGG-ATTCTGGACCTCATTGAGGAG-AAATCGC-AAGGCGACTAT-ATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATGTGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCACAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTAACAAGAGACCATGACAAAACAATGAGGCAACAGATCAAGGTGTGCATTTTAACAGGAAGTTAGAGAACTGAACATCTCTTGCTGCTGTATACTTTAATTTATAGTTGGGGATATCTGGCTTTTGAGTATTATCTGAAACTGGAGTTCTTTTGCTGGATTCCCGGATATTTGTTCGATTTCGTCCTAGAATTGAGTCAAATGTGATGATGCAAATAATTCTTGCTATGTACATTATGCATCTGATAAATAATAGGTAGTCAGGCTGTAACCCCTTTGTGTCTGGACTTTCTCTTATTTTCATATAGTGATTCTGAATGATTTTTCTGTTAATGAAAGCTCCAAGTATGGTGTACAGTGATCATAATTGCTGTTTAACTTGAATCAGTTGACCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCAT-CCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGA-GGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</genome_strand>
        <mrna_strand>CGGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299176" ref_strand="+" ref_description="SGN-E299176 [cLET-42-J8]">
      <seq>aattctccatcacgtatgatgcatggtcaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcggaggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85148" stop="86974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85448" g_stop="85772" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="478" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="556" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86844" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="568" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E299176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85448" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTAT</genome_strand>
        <mrna_strand>AATTCTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGAGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730712" ref_strand="+" ref_description="SGN-E730712 [LA24DH01]">
      <seq>ccgttgcatggtcaaaaaaaaaaaaaaacttctatcaacctactttttcttcggaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagcccaataaaagtcaacaaaagctgccgctcggggatctttttatcaaacaaagcaacaattgtatgtcggaggaactttcaagttaaacccctgaaaaatgggatgaacgggggcacaaatggcaggggattagggggccgaatttggaacccaggcttgaaaattgaggggccttttgaacaaaggccggggaatgagtactcttctctgaaaaatgaaactttatactcttgggcaaaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcccagttttgggagaacctattgctgctgcaagcttcaatccttcaaaggatcctttaaaatttctcctggctgcaagaacgggaactctttttcttgttgcactgattgccctaaaaatttatctgggatggacctatgttggaaataggcttttatcaccagttataccttatgaaaaaactgaatggtatgatgggcagatgtgggtgaaccccccaaaaatcttacctcggaataggctgttgggatcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85165" stop="88101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85463" g_stop="85772" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.115" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.849" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="541" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="0.92"/>
            <acceptor a_prob="0.341" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="637" r_length="96" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87801" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="671" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E730712" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85463" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATA</genome_strand>
        <mrna_strand>CCGTTGCATGGTCAAAAAAAAAAAAAAACTTCTATCAACCTACTTTTTCTTCGGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGCCCAATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCTTTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACTTTCAAGTTAAACCCCTGAAAAATGGGATGAACGGGGGCACAAATGGCAGGGGATTAGGGGGCCGAATTTGGAACCCAGGCTTGAAAATTGAGGGGCCTTTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGAGTACTCTTCTCTGAAAAATGAAACTTTATACTCTTGGGCAAAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCCCAGTTTTGGGAGAACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAAATTTCTCCTGGCTGCAAGAACGGGAACTCTTTTTCTTGTTGCACTGATTGCCCTAAAAATTTATCTG........................................................................................................................................................................GGATGGACCTATGTTGGAAATAGGCTTTTATCACCAGTTATACCTTATGAAAAAACTGAATGGTATGATGGGCAGATGTGGGTGAACCCCCCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACCTCGGAATAGGCTGTTGGGATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725778" ref_strand="+" ref_description="SGN-E725778 [LA05CF06]">
      <seq>catggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaccgatggtttgtcggaggaacattcgagttaaagccctgaaagatgggataaacggtggcacaaatggcaggggattaggtggtcgtagttgggacccaggcttgaaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctggggggactttggttagtcactttcgcagttttgggagtacctatggctgctgcaagcttcaatccttcaaaggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85169" stop="86711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85469" g_stop="85772" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="457" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86592" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="463" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E725778" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85469" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCT</genome_strand>
        <mrna_strand>CATGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCACCGATGGTTTGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATAAACGGTGGCACAAATGGCAGGGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGAAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTGGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATGGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735756" ref_strand="+" ref_description="SGN-E735756 [LC02DE11]">
      <seq>cggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85172" stop="85979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85471" g_stop="85680" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735756" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85471" e_stop="85680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735838" ref_strand="+" ref_description="SGN-E735838 [LC03BD04]">
      <seq>cggtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85178" stop="85979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85471" g_stop="85679" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735838" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85471" e_stop="85679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGGTCAAAA-AAAA-AAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735350" ref_strand="+" ref_description="SGN-E735350 [LC01AF10]">
      <seq>cgtttaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcaaacaaagcaacaattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85173" stop="85979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85472" g_stop="85680" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735350" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85472" e_stop="85680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGTTTAAAAAAAAAAA-AACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739164" ref_strand="+" ref_description="SGN-E739164 [LC16BE08]">
      <seq>cgttaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85177" stop="85979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85472" g_stop="85679" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E739164" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85472" e_stop="85679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGTTAA-AAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327449" ref_strand="+" ref_description="SGN-E327449 [cTOC-19-H7]">
      <seq>tcaaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85173" stop="88301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85474" g_stop="85772" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="627" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="663" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88001" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="748" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E327449" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85474" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735378" ref_strand="+" ref_description="SGN-E735378 [LC01BD04]">
      <seq>gtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85178" stop="85979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85475" g_stop="85679" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735378" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85475" e_stop="85679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>GTCAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252133" ref_strand="+" ref_description="SGN-E252133 [cLEG-8-G4]">
      <seq>aaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85183" stop="87219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85483" g_stop="85772" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="521" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86919" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="608" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E252133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85483" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</genome_strand>
        <mrna_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302916" ref_strand="+" ref_description="SGN-E302916 [cLEW-26-K10]">
      <seq>tttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85206" stop="87220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85506" g_stop="85772" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="420" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="498" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86920" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="586" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E302916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85506" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</genome_strand>
        <mrna_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259441" ref_strand="+" ref_description="SGN-E259441 [cLEG-42-A23]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttcgaggccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85227" stop="87224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85527" g_stop="85772" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="399" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="477" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86924" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="569" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E259441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85527" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCGAGGCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255109" ref_strand="+" ref_description="SGN-E255109 [cLEG-31-F20]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacagaatagggnnccagtggattaagtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagatttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85227" stop="87180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85527" g_stop="85772" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="405" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="483" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86880" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="531" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E255109" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85527" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCAC-GAAT--GG---CAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACAGAATAGGGNNCCAGTGGATTAAGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGATTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368226" ref_strand="+" ref_description="SGN-E368226 [TUS-26-I14]">
      <seq>ttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggaggcacgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85227" stop="86005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85527" g_stop="85705" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E368226" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85527" e_stop="85705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGG</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGAGGCACGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726018" ref_strand="+" ref_description="SGN-E726018 [LA10AC02]">
      <seq>gagggaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggngactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85233" stop="87151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85529" g_stop="85772" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="397" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="475" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86851" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="494" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E726018" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85529" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAG</genome_strand>
        <mrna_strand>GAGGGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGNGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740443" ref_strand="+" ref_description="SGN-E740443 [LC21BH02]">
      <seq>ccgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcagagataggtattatcgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85233" stop="88595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85531" g_stop="85772" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="395" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="473" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="569" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="605" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="787" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88295" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="907" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E740443" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85531" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</genome_strand>
        <mrna_strand>CCGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740389" ref_strand="+" ref_description="SGN-E740389 [LC21AH04]">
      <seq>cgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaggggagacgatgatctagcaaaagctgccgctgaagcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85233" stop="88555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85532" g_stop="85772" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="394" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="568" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="604" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="786" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88255" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="866" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E740389" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85532" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</genome_strand>
        <mrna_strand>CGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAGGGGAGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726596" ref_strand="+" ref_description="SGN-E726596 [LA12BB06]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaagccagtttactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85240" stop="88572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85540" g_stop="85772" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="778" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88272" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="875" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E726596" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85540" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAAGCCAGTTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729298" ref_strand="+" ref_description="SGN-E729298 [LA20CE05]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85240" stop="88351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85540" g_stop="85772" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88051" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="731" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E729298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85540" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735627" ref_strand="+" ref_description="SGN-E735627 [LC02BD11]">
      <seq>ccattttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85257" stop="88554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85555" g_stop="85772" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="371" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="545" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="581" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="763" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88254" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="842" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85555" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</genome_strand>
        <mrna_strand>CCATTTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735421" ref_strand="+" ref_description="SGN-E735421 [LC01CB06]">
      <seq>caatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaaacagctgatggaaggccagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85257" stop="88570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85556" g_stop="85772" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="370" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="544" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="580" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="762" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88270" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="857" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85556" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACT</genome_strand>
        <mrna_strand>CAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAACAGCTGATGGAAGGCCAGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735669" ref_strand="+" ref_description="SGN-E735669 [LC02CB06]">
      <seq>aatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcaaagataggtattatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85257" stop="88590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85557" g_stop="85772" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="369" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="543" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="579" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="761" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88290" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="876" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85557" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGT</genome_strand>
        <mrna_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAAAGATAGGTATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348117" ref_strand="+" ref_description="SGN-E348117 [cTOF-31-N22]">
      <seq>gtttctagtccgatagaagtcaaccaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactgggatggtatgatgggccaatggtggggtgaagcccccagagatcttagctcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85275" stop="87236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85575" g_stop="85772" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="528" r_length="99" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E348117" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85575" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACT-GGATGGTATGATGGGCAGAT-GT-GGGTGAAGCCCCCAGAG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACCAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGGATGGTATGATGGGCCAATGGTGGGGTGAAGCCCCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725776" ref_strand="+" ref_description="SGN-E725776 [LA05CF04]">
      <seq>gtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagaattctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85275" stop="87216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85575" g_stop="85772" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86916" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="513" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E725776" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85575" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGAATTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728507" ref_strand="+" ref_description="SGN-E728507 [LA18AC03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataagtattatcgtgcattggccggtggacagtactgcaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85306" stop="88622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85606" g_stop="85772" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88322" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="859" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E728507" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85606" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAAGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728646" ref_strand="+" ref_description="SGN-E728646 [LA18CA03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85306" stop="88519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85606" g_stop="85772" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88219" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="756" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E728646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85606" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733822" ref_strand="+" ref_description="SGN-E733822 [LB11AB09]">
      <seq>ctcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattgggcggtggacagtactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85318" stop="88616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85617" g_stop="85772" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="309" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="483" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="519" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="701" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88176" g_stop="88316" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="842" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E733822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85617" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAA</genome_strand>
        <mrna_strand>CTCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGGCGGTGGACAGTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278922" ref_strand="+" ref_description="SGN-E278922 [cLER-2-A18]">
      <seq>taaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="85367" stop="88291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85667" g_stop="85772" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86258" g_stop="86410" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="259" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="337" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="433" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="469" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87917" g_stop="87991" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="544" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E278922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85667" e_stop="85772"/>
          <exon e_start="86258" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="87991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</genome_strand>
        <mrna_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291353" ref_strand="+" ref_description="SGN-E291353 [cLET-2-F13]">
      <seq>actttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="86044" stop="88389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86344" g_stop="86410" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86587" g_stop="86664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="241" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="277" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87917" g_stop="88089" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="450" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E291353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86344" e_stop="86410"/>
          <exon e_start="86587" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</genome_strand>
        <mrna_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738415" ref_strand="+" ref_description="SGN-E738415 [LC13CC10]">
      <seq>agatatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="86532" stop="88734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86653" g_stop="86664" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="109" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="145" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="327" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88176" g_stop="88434" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="586" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E738415" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86653" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGA-ATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740199" ref_strand="+" ref_description="SGN-E740199 [LC20BH04]">
      <seq>agattttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="86532" stop="88734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86653" g_stop="86664" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86833" g_stop="86928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="108" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="144" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="326" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88176" g_stop="88434" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="585" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E740199" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86653" e_stop="86664"/>
          <exon e_start="86833" e_stop="86928"/>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATTTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733301" ref_strand="+" ref_description="SGN-E733301 [LB04CA09]">
      <seq>cctccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="87466" stop="88759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87768" g_stop="87803" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="45" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87917" g_stop="88098" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="227" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88176" g_stop="88455" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E733301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87768" e_stop="87803"/>
          <exon e_start="87917" e_stop="88098"/>
          <exon e_start="88176" e_stop="88455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAG</genome_strand>
        <mrna_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222411" ref_strand="+" ref_description="SGN-E222411 [cLEL-16-O11](-)">
      <seq>agtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaccaaaagaaagagaatccccccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="87682" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87982" g_stop="88098" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88176" g_stop="88490" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="432" r_length="315" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="477"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E222411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87982" e_stop="88098"/>
          <exon e_start="88176" e_stop="88490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATC</genome_strand>
        <mrna_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGACCAAAAGAAAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222654" ref_strand="+" ref_description="SGN-E222654 [cLEL-16-O11](-)">
      <seq>caggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgttgttctagcaaaagctgccgcttaagcagttgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggccagtactgcaaatgggaagacttagtttaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctggacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaacaaaagaaagagaatcatacccccaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="87874" stop="88801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88096" g_stop="88098" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88176" g_stop="88500" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="328" r_length="325" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="344"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E222654" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88096" e_stop="88098"/>
          <exon e_start="88176" e_stop="88500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</genome_strand>
        <mrna_strand>CAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGTTGTTCTAGCAAAAGCTGCCGCTTAAGCAGTTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGCCAGTACTGCAAATGGGAAGACTTAGTTTAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGGACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGAACAAAAGAAAGAGAATCATACCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253292" ref_strand="-" ref_description="SGN-E253292 [cLEG-26-M8]">
      <seq>tatcccaactttcaagtttggttttttggttagagttcgttaacaggcaaaaaaaagcttaatccgaatgatggcaagaattatatagatatataatgatattagttagtaaaccaactaccaaatgtaggggtaatttttttttcttttttgaatattaagttgtggtgcatagtgtttcatccttaactaaagattttatgttcgagctcaagtatgaaaaaaaattttgttgggagcatcccctcgaatggattttacaaagcgcaattcaaattcgatcgaagctccaatacggattttgaacactttggccgaaaaaaaaagctttttgaaaattttctttctttctttgtaggatacatgcaagaaaatatgtatcgccagttttctctttaaatgtcctattgattgtagttaccttgaagattttgtacaaggctccatttgggaatattttgcaaattatcttatcatgtttgttatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="93920" stop="92831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93620" g_stop="93132" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="527"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E253292" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93620" e_stop="93132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</genome_strand>
        <mrna_strand>TATCCCAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAAAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTAGGGGTAATTTTTTTTTCTTTTTTGAATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAAAGATTTTATGTTCGAGCTCAAGTATGAAAAAAAATTTTGTTGGGAGCATCCCCTCGAATGGATTTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGAAAATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGCCAGTTTTCTCTTTAAATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554213" ref_strand="+" ref_description="SGN-E554213 [cTSC-3-J16]">
      <seq>gcctttttggttatgcttcaggaactgctcgtggaatggcttatcgtgccagagttgccgtctacaaggtttgctggcttgggaaatgctttggccccgacatattggcaggtatggacaaagccattgatgataatgttaatgtgctttcattatcacttggtggagagcattttgatttctacagcgacgatgttgcaattggagcatttgctgcaatggagaagggtattatggtttcttgctctgctggaaatgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaataaaaaaatggagccgggatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggacaatggtaggagtccaaccagcaccgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95279" stop="96646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95579" g_stop="96346" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E554213" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95579" e_stop="96346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</genome_strand>
        <mrna_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATAAAAAAATGGAGCCGGGATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGG-ACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553607" ref_strand="+" ref_description="SGN-E553607 [cTSC-1-K17]">
      <seq>atgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaacatctacacctttcggtcacggcgctgggcacgtggatcccgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95534" stop="97010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95834" g_stop="96710" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E553607" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95834" e_stop="96710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</genome_strand>
        <mrna_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAA-CATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704631" ref_strand="+" ref_description="SGN-E704631 [FA24DC10]">
      <seq>cgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggcgtcgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcgccttcgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95586" stop="96922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95886" g_stop="96622" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E704631" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95886" e_stop="96622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</genome_strand>
        <mrna_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGCGTCGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGCCTTCGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704338" ref_strand="+" ref_description="SGN-E704338 [FA24AA12]">
      <seq>agggagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaangcaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacataccaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95773" stop="97280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96070" g_stop="96980" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="911" r_length="911" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E704338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96070" e_stop="96980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>AGGGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAANGCAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACCAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701890" ref_strand="+" ref_description="SGN-E701890 [FA17AH09]">
      <seq>ggcctaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95810" stop="97280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96110" g_stop="96980" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E701890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96110" e_stop="96980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>GGCCTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702073" ref_strand="+" ref_description="SGN-E702073 [FA17CH09]">
      <seq>ggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattacatggcgatgaaatcaagaagtatataacatcatatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggcgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccacgacttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatccacaatcaatatcctagcaacaagaaacttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="95811" stop="97126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96111" g_stop="96826" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E702073" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96111" e_stop="96826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACAT</genome_strand>
        <mrna_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTACATGGCGATGAAATCAAGAAGTATATAACATCATATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGCGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCACGACTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCCACAATCAATATCCTAGCAACAAGAAACTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705635" ref_strand="+" ref_description="SGN-E705635 [FA27CH04]">
      <seq>ggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattatagttgaacctgaaacagttagttttactcagattaatgagaagatatcgtatagtgtgagttttactgctccatcaaagcccccatctaccaatgtattcggcaaaattgagtggtcagatgggacgcatttggtcactagtccagttgcaatttcttggtcatgaattatatgaacaaattanagagctatatatagctgctatcgatttaatgtaaagttaatcaaagaaatttatgcttcttgctcacagtgcagtgatgtttcgtaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="96129" stop="97575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96429" g_stop="97283" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E705635" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96429" e_stop="97283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTANAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705470" ref_strand="+" ref_description="SGN-E705470 [FA27BA04]">
      <seq>ggccggttggagcggagcagtcagtcctacaggggtgcctgaggacgatagacgggtcgagttcaacatgtatctcacgcacatccatgtcgtgtccacacagtgagtggcttagcggctttgctcaaaggagtccacccacaatggagccccgccgccattcattcggcgctcatgacacaccgcttacaccacctacaggaacggcggagcactagctagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgattcatcggtgaacccaagtcttgtttaccacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagaccatcacaaatcagtatcatagcgagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacgatcatatacaaccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattataattgaacctgaaacaggtagatttactcaaattaatgagaagatatcgtatagtgtgagttgtactgctccatcgaagcccccatctaccaatgtattcagcaaaattgagtggtcatatgggactcatttggtcactagaccagatgcaatttcttggtcatgaattatatgaacacattaaagagctatatatagctgctatcgatttaatgtgaagttaatcatagaaatctatgcttcttgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="96129" stop="97552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96429" g_stop="97252" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E705470" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96429" e_stop="97252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACAT-TATCTCAGGCACATCCATGTCGTGTCCACAC-GTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGAC-CACCGCTTACACCACCTACAGGAACGGCGGAGCACTA-CTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCAC</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGAGCAGTCAGTCCTACAGGGGTGCCTGAGGACGATAGACGGGTCGAGTTCAACATGTATCTCACGCACATCCATGTCGTGTCCACACAGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCACAATGGAGCCCCGCCGCCATTCATTCGGCGCTCATGACACACCGCTTACACCACCTACAGGAACGGCGGAGCACTAGCTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGATTCATCGGTGAACCCAAGTCTTGTTTACCACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGACCATCACAAATCAGTATCATAGCGAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACGATCATATACAACCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAATTGAACCTGAAACAGGTAGATTTACTCAAATTAATGAGAAGATATCGTATAGTGTGAGTTGTACTGCTCCATCGAAGCCCCCATCTACCAATGTATTCAGCAAAATTGAGTGGTCATATGGGACTCATTTGGTCACTAGACCAGATGCAATTTCTTGGTCATGAATTATATGAACACATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTGAAGTTAATCATAGAAATCTATGCTTCTTGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746436" ref_strand="+" ref_description="SGN-E746436 [GI|47105018]">
      <seq>gatccactccctcttattaatgcagcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttggccaaccaagcaccttggatcaccacagtcggtgctggaacaattgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="100456" stop="103528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="103220" g_length="2466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2466" r_length="2466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2467" polyA_stop="2481"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E746436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2466</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="103220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTT</genome_strand>
        <mrna_strand>GATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340986" ref_strand="+" ref_description="SGN-E340986 [cTOF-5-H23]">
      <seq>agcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcangaactgctcgtggaatggcctatcgtgccagagtgccatgtaccaagtttgctggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="100478" stop="101852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100778" g_stop="101552" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E340986" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100778" e_stop="101552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTT</genome_strand>
        <mrna_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCANGAACTGCTCGTGGAATGGCCTATCGTGCCAGAG-TGCCATGTACCAAGTTTGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709595" ref_strand="+" ref_description="SGN-E709595 [FA52CB04]">
      <seq>cggctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggattttggtttcttgctctgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="100732" stop="102027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101032" g_stop="101727" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E709595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101032" e_stop="101727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAA</genome_strand>
        <mrna_strand>CGGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGG-ATTTTGGTTTCTTGCTCTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728865" ref_strand="+" ref_description="SGN-E728865 [LA19AH01]">
      <seq>aggtttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101508" stop="102681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101805" g_stop="102381" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E728865" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101805" e_stop="102381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</genome_strand>
        <mrna_strand>AGGTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725866" ref_strand="+" ref_description="SGN-E725866 [LA08CC06]">
      <seq>ggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcaccaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcagaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgaccgggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101634" stop="102743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101934" g_stop="102443" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E725866" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101934" e_stop="102443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</genome_strand>
        <mrna_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCACCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAGACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACCGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728730" ref_strand="+" ref_description="SGN-E728730 [LA18DA12]">
      <seq>aagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtgggggacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101724" stop="103054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102024" g_stop="102754" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E728730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102024" e_stop="102754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</genome_strand>
        <mrna_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGGGGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699640" ref_strand="+" ref_description="SGN-E699640 [FA10DB05]">
      <seq>tctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttcccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101900" stop="103321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102200" g_stop="103021" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E699640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102200" e_stop="103021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTT-CCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</genome_strand>
        <mrna_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735762" ref_strand="+" ref_description="SGN-E735762 [LC02DF09]">
      <seq>cgtatacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101919" stop="103318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102218" g_stop="103018" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E735762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102218" e_stop="103018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</genome_strand>
        <mrna_strand>CGTATACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706660" ref_strand="+" ref_description="SGN-E706660 [FA30CC11]">
      <seq>ctcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="101991" stop="103422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102291" g_stop="103122" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E706660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102291" e_stop="103122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</genome_strand>
        <mrna_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699872" ref_strand="+" ref_description="SGN-E699872 [FA11BG10]">
      <seq>aaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttatacaatatcttgctcactgtacggtattttaagcaattctaattgtgaactgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="102341" stop="103575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102641" g_stop="103272" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="650"/>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E699872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102641" e_stop="103272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</genome_strand>
        <mrna_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353937" ref_strand="+" ref_description="SGN-E353937 [cTOS-10-J8]">
      <seq>tttttttttacgtaatctttcttcaaattataatatctgcaatccaaccaaataattaaaggaaaaatcaccatgatatagagatcatgtctgccggtttaaagaaaacatgataagaaagaagagaaatttctcttactctttggtgatctctgaatatgaaacaagactttccgtggaccatcacaattctgaagagctggtaaaatcatgcaaactaagccaccatgtattctggtactcctctgggataacacttctccacaatacttactagaagcaaagtattaatttagccttttcagggcatcaatctgcaaagtggctcgaaagcaaaattgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="105526" stop="106467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105823" g_stop="106167" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E353937" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105823" e_stop="106167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</genome_strand>
        <mrna_strand>TTTTTTTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGGTAAAATCATGCAAACTAAGCCACCATGTATTCTGGTACTCCTCTGGGATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGGCTCGAAAGCAAAATTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700950" ref_strand="+" ref_description="SGN-E700950 [FA14CE03]">
      <seq>gttcgatacacaactgctctctttgtcggtacctttttgggaatgctctcggatttgattggccacagaaaagtcaccttgttattttgcttgctgcatctttttgttgccgtatggaggagggttactggacatccaactatttggctcgctagcatctgtctgtctcttacctctacaatatttttcttcaacttccagacatggatggttgttgagcatgataagcttgagcagaagcaggattcactgaatgacatgttttggttagtgacttttgttgaatctgcatctttcattggaagccaagtggttggtaactggttaattggcggtcgtgaaaagacaactttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaacgaatatccaaaatcaattattcttaaagaatatcagactagatttcatacatacataatcagtgataaaagggtttggcttttgtcatggacccaagctaccatgcacttctcaattgcagttttttggattacttgggctccaaccattgtggcagatgggagatgggttttgctaggattactatacccctgtgtacttggtgcgaaaatgcttgcaagcactgcattttcctggatctctagtggccctttatcactccgaacagacgagtgcttattatatgcctgcattattatgggcttagccacttccattgcagcttatgattatcaggatgttgaaattctcttgatgctattctgcatatttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="110843" stop="106844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110543" g_stop="110485" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110484" i_stop="110019" i_length="466">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110018" g_stop="109850" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="228" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109849" i_stop="109303" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109302" g_stop="109044" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="487" r_length="259" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109043" i_stop="108164" i_length="880">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108163" g_stop="108075" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="576" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108074" i_stop="107447" i_length="628">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107446" g_stop="107264" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="759" r_length="183" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107263" i_stop="107185" i_length="79">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107184" g_stop="107144" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="800" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E700950" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110543" e_stop="110485"/>
          <exon e_start="110018" e_stop="109850"/>
          <exon e_start="109302" e_stop="109044"/>
          <exon e_start="108163" e_stop="108075"/>
          <exon e_start="107446" e_stop="107264"/>
          <exon e_start="107184" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCCTTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAGGTATTTATGAGTTTTCTTATCTTCAAGCTGTTCAAATATCAAGTAATGTCATCAAACTTAATTTGTGATATTGTTGCAGGATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</genome_strand>
        <mrna_strand>GTTCGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCACAGAAAAGTCACCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCCAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAAGCAGGATTCACTGAATGACATGTTTTGGTTAGTGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGCGGTCGTGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAACGAATATCCAAAATCAATTATTCTTAAAGAATATCAGACTAGATTTCATACATACATAATCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGATGGGTTTTGCTAGGATTACTATACCCCTGTGTACTTGGTGCGAAAATGCTTGCAAGCACTGCATTTTCCTGGATCTCTAGTGGCCCTTTATCACTCCGAACAGACGAGTGCTTATTATATGCCTGCATTATTATGGGCTTAGCCACTTCCATTGCAGCTTATGATTATCAG...............................................................................GATGTTGAAATTCTCTTGATGCTATTCTGCATATTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201886" ref_strand="+" ref_description="SGN-E201886 [cLEC-18-E9]">
      <seq>tcatcttcgtatgagttcatatttcataatgacaacccaataatggcaactctcaatcatgtgttccactgtgtagtctcctttaaatgttctgtaatttggctcatgtagcatgtgaattgtttagtcactcttcttacatagatactggctatgtggttcagtactcctatctttctccttgtactttgaaaatctgaatttaggcaattcgattgttttttatgtcttattagattgtcttttgtctttcttttccagccttctacgatatttctgtgatgttgtataacttctgccaaaaaaaattttcttaggctttcaataggagatagcctaagtaaagagtcgcattcaagtctgaacaataatctttatggctctgcttatcagtgtctacacagattttcttaccgggtgaactatttttatgtcttctttcagcctctgataattcattagtgtctttagagttcatcttgattgatgtttgttttgatccttcactaacttgtatttattgttgcggatgatggcagtgcaaggtgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="+" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="113283" stop="114435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113583" g_stop="114135" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="+" ref_id="SGN-E201886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113583" e_stop="114135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</genome_strand>
        <mrna_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270959" ref_strand="+" ref_description="SGN-E270959 [cLEM-22-C7]">
      <seq>agcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttaccgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggccaagtgagggctgctgaaactagcagaatgaggacaccagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="115585" stop="114381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115585" g_stop="115541" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="90" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115540" i_stop="115077" i_length="464">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115076" g_stop="114681" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="488" r_length="398" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114680" i_stop="114628" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114627" g_stop="114619" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="497" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E270959" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115585" e_stop="115541"/>
          <exon e_start="115076" e_stop="114681"/>
          <exon e_start="114627" e_stop="114619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTA-CGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGG-CAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACA-CAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CTCCGTTACCGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACCAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551253" ref_strand="+" ref_description="SGN-E551253 [TUS-11-B21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="115585" stop="114381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115585" g_stop="115541" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="90" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115540" i_stop="115077" i_length="464">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115076" g_stop="114681" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114680" i_stop="114628" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114627" g_stop="114619" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E551253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115585" e_stop="115541"/>
          <exon e_start="115076" e_stop="114681"/>
          <exon e_start="114627" e_stop="114619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688193" ref_strand="+" ref_description="SGN-E688193 [t3_tus_11_b21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155D20-yhY9Z/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0155D20.2" temp_strand="-" temp_description="C02HBa0155D20.2  AC215398.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155D20 sequenced_by:kribb upload_account_name:korea">
        <position start="115585" stop="114381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115585" g_stop="115541" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="90" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115540" i_stop="115077" i_length="464">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115076" g_stop="114681" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114680" i_stop="114628" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114627" g_stop="114619" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155D20.2" gen_strand="-" ref_id="SGN-E688193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155D20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115585" e_stop="115541"/>
          <exon e_start="115076" e_stop="114681"/>
          <exon e_start="114627" e_stop="114619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>186</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6664" PGL_stop="7907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6743" e_stop="6937"/>
            <exon e_start="7005" e_stop="7074"/>
            <exon e_start="7150" e_stop="7447"/>
            <exon e_start="7515" e_stop="7907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6743" e_stop="6937" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6938" i_stop="7004" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7005" e_stop="7074" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.968">
            <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7150" e_stop="7447" e_length="298"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.981">
            <gDNA_intron_boundary i_start="7448" i_stop="7514" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="7515" e_stop="7907" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6743" stop="6937"/>
              <exon start="7005" stop="7074"/>
              <exon start="7150" stop="7315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6744" stop="6937"/>
              <exon start="7005" stop="7074"/>
              <exon start="7150" stop="7312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6744" stop="6937"/>
              <exon start="7005" stop="7074"/>
              <exon start="7150" stop="7304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6808" stop="6937"/>
              <exon start="7005" stop="7074"/>
              <exon start="7150" stop="7447"/>
              <exon start="7515" stop="7872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7386" stop="7447"/>
              <exon start="7515" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAG : GAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC : TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATTTGTATGATGAAAATATATGCATAGTTTGCTATGATAATAAACGAAATTGCTTCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAG : GATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCAATTCAGAAATTTTAGCTTTTCATTTTTATAAAATATTTC</gDNA_template>
            <first_frame> Y  V  N  S  F  L  F  K  I  M  P  L  E  L  H  L  N  *  Y  T  Q  V  G  G  K  I  A  A  H  P  G  K  N  P  N  L  K  D  M  S  P  S  Q  V  L  R  I  S  P  I  Q  L  N  F  S  Q  Y  H  T  L  V  S  L  N  Q  :  E  D  Q  D  Q  R  Q  A  A  L  E  Y  I  L  N  V  I  V  Y  S  S  V  I   : L  V  L  L  M  V  A  A  L  L  I  K  L  L  G  V  C  D  G  E  I  A  R  N  D  E  T  V  R  R  E  T  D  R  L  I  S  K  A  S  A  S  L  T  Y  G  T  C  D  E  D  D  L  E  S  G  N  C  S  R  S  S  S  S  E  D  L  Y  D  E  N  I  C  I  V  C  Y  D  N  K  R  N  C  F  F  I  P  C  G  H  C  A  T  C  L  S  C  A  E  R :   I  T  E  E  E  N  K  N  C  P  I  C  R  R  V  I  R  R  V  R  R  V  L  L  A  *  T  Q  Y  F  P  Y  V  N  *  L  F  L  I  Q  Q  W  *  Y  *  Y  S  T  F  F  I  F  T  A  N  C  *  V  A  I  *  Q  E  *  V  K  L  *  C  T  I  T  C  L  C  M  C  T  L  I  G  T  Y  Y  L  G  P  F  W  R  K  L  Y  G  W  C  S  I  M  E  K  S  N  A  H  N  G  T  M  G  T  V  H  Y  *  *  F  Q  F  R  N  F  S  F  S  F  L  *  N  I   </first_frame>
            <second_frame>  T  S  T  H  F  F  S  K  *  C  P  L  S  Y  T  S  I  N  T  P  R  *  E  A  K  L  Q  L  T  Q  A  K  T  R  I  L  R  T  C  L  Q  V  K  Y  *  E  *  A  Q  F  N  S  I  S  V  S  T  I  P  W  S  P  *  I  R :   K  I  K  I  N  D  R  L  H  *  S  T  F  L  M  L  L  F  T  P  L  L  S  :  W  C  C  *  W  L  R  R  C  *  L  N  Y  L  E  F  V  M  A  K  L  Q  E  M  M  K  L  *  E  E  K  R  T  D  *  Y  R  K  Q  V  L  L  *  H  T  E  H  V  M  K  M  I  W  N  R  E  I  A  V  V  L  V  P  L  R  I  C  M  M  K  I  Y  A  *  F  A  M  I  I  N  E  I  A  S  L  F  L  V  D  I  A  L  L  V  S  H  V  P  R   : G  L  Q  R  K  K  T  R  I  A  Q  F  V  E  E  *  F  G  E  L  E  E  C  F  L  H  K  L  N  I  S  L  M  *  I  D  S  F  *  F  N  N  G  N  I  S  I  A  L  F  S  F  L  L  Q  I  A  E  L  Q  F  D  K  S  R  *  N  Y  D  V  P  *  H  V  C  V  C  V  H  S  L  V  P  I  T  W  V  P  F  G  E  S  F  M  D  G  V  V  *  W  K  K  V  M  P  T  T  E  L  W  A  L  Y  I  I  D  N  F  N  S  E  I  L  A  F  H  F  Y  K  I  F  </second_frame>
            <third_frame>   R  Q  L  I  S  F  Q  N  N  A  P  *  V  T  P  Q  L  I  H  P  G  R  R  Q  N  C  S  S  P  R  Q  K  P  E  S  *  G  H  V  S  K  S  S  T  K  N  K  P  N  S  T  Q  F  Q  S  V  P  Y  P  G  L  L  K  S   : G  R  S  R  S  T  T  G  C  I  R  V  H  S  *  C  Y  C  L  L  L  C  Y  P :   G  V  A  D  G  C  G  V  V  N  *  I  T  W  S  L  *  W  R  N  C  K  K  *  *  N  C  E  K  R  N  G  Q  I  D  I  E  S  K  C  F  F  D  I  R  N  M  *  *  R  *  F  G  I  G  K  L  Q  S  F  *  F  L  *  G  F  V  *  *  K  Y  M  H  S  L  L  *  *  *  T  K  L  L  L  Y  S  L  W  T  L  R  Y  L  S  L  M  C  R  E  :  D  Y  R  G  R  K  Q  E  L  P  N  L  S  K  S  N  S  E  S  *  K  S  A  S  C  I  N  S  I  F  P  L  C  K  L  T  L  S  N  S  T  M  V  I  L  V  *  H  F  F  H  F  Y  C  K  L  L  S  C  N  L  T  R  V  G  K  I  M  M  Y  H  N  M  F  V  Y  V  Y  T  H  W  Y  L  L  L  G  S  L  L  E  K  A  L  W  M  V  *  Y  N  G  K  K  *  C  P  Q  R  N  Y  G  H  C  T  L  L  I  I  S  I  Q  K  F  *  L  F  I  F  I  K  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6797" stop="6937"/>
                    <exon start="7005" stop="7074"/>
                    <exon start="7150" stop="7447"/>
                    <exon start="7515" stop="7593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTQVGGKIAAHPGKNPNLKDMSPSQVLRISPIQLNFSQYHTLVSLNQEDQDQRQAALEYILNVIVYSSVILVLLMVAALLIKLLGVCDGEIARNDETVRRETDRLISKASASLTYGTCDEDDLESGNCSRSSSSEDLYDENICIVCYDNKRNCFFIPCGHCATCLSCAERITEEENKNCPICRRVIRRVRRVLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7399" e_stop="7868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="7399" e_stop="7868" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7399" stop="7868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTATTCCTTGTGGACATTGCGCTACTTGTCTCTCATGTGCCGAGAGGTAATTTATATCCCGCCATTTAAGTTATACGCATCGTCAGTATACGATTGATTTTGTTGATACGCAGGATTACAGAGGAAGAAAACAAGAATTGCCCAATTTGTCGAAGAGTAATTCGGAGAGTTAGAAGAGTGCTTCTTGCATAAACTCAATATTTCCCTTATGTAAATTGACTCTTTCTAATTCAACAATGGTAATATTAGTATAGCACTTTTTTCATTTTTACTGCAAATTGCTGAGTTGCAATTTGACAAGAGTAGGTAAAATTATGATGTACCATAACATGTTTGTGTATGTGTACACTCATTGGTACCTATTACTTGGGTCCCTTTTGGAGAAAGCTTTATGGATGGTGTAGTATAATGGAAAAAAGTAATGCCCACAACGGAACTATGGGCACTGTACATTATTGATAATTTCA</gDNA_template>
            <first_frame> S  L  F  L  V  D  I  A  L  L  V  S  H  V  P  R  G  N  L  Y  P  A  I  *  V  I  R  I  V  S  I  R  L  I  L  L  I  R  R  I  T  E  E  E  N  K  N  C  P  I  C  R  R  V  I  R  R  V  R  R  V  L  L  A  *  T  Q  Y  F  P  Y  V  N  *  L  F  L  I  Q  Q  W  *  Y  *  Y  S  T  F  F  I  F  T  A  N  C  *  V  A  I  *  Q  E  *  V  K  L  *  C  T  I  T  C  L  C  M  C  T  L  I  G  T  Y  Y  L  G  P  F  W  R  K  L  Y  G  W  C  S  I  M  E  K  S  N  A  H  N  G  T  M  G  T  V  H  Y  *  *  F   </first_frame>
            <second_frame>  L  Y  S  L  W  T  L  R  Y  L  S  L  M  C  R  E  V  I  Y  I  P  P  F  K  L  Y  A  S  S  V  Y  D  *  F  C  *  Y  A  G  L  Q  R  K  K  T  R  I  A  Q  F  V  E  E  *  F  G  E  L  E  E  C  F  L  H  K  L  N  I  S  L  M  *  I  D  S  F  *  F  N  N  G  N  I  S  I  A  L  F  S  F  L  L  Q  I  A  E  L  Q  F  D  K  S  R  *  N  Y  D  V  P  *  H  V  C  V  C  V  H  S  L  V  P  I  T  W  V  P  F  G  E  S  F  M  D  G  V  V  *  W  K  K  V  M  P  T  T  E  L  W  A  L  Y  I  I  D  N  F  </second_frame>
            <third_frame>   F  I  P  C  G  H  C  A  T  C  L  S  C  A  E  R  *  F  I  S  R  H  L  S  Y  T  H  R  Q  Y  T  I  D  F  V  D  T  Q  D  Y  R  G  R  K  Q  E  L  P  N  L  S  K  S  N  S  E  S  *  K  S  A  S  C  I  N  S  I  F  P  L  C  K  L  T  L  S  N  S  T  M  V  I  L  V  *  H  F  F  H  F  Y  C  K  L  L  S  C  N  L  T  R  V  G  K  I  M  M  Y  H  N  M  F  V  Y  V  Y  T  H  W  Y  L  L  L  G  S  L  L  E  K  A  L  W  M  V  *  Y  N  G  K  K  *  C  P  Q  R  N  Y  G  H  C  T  L  L  I  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6813" e_stop="7382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6813" e_stop="7382" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6813" stop="7382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCCGTAAGTTTCTATACACAAAAATCATGTGTGAAATTGATGTTACTCTATGAAATTAACAATTCTGATTTGAATCAGTGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAGAAGAGAAACGGACAGATTGATATCGAAAGCAAGTGCTTCTTTGACATACGGAACATGTGATGAAGATGATTTGGAATCGGGAAATTGCAGTCGTTCTAGTTCCTCTGAGGATTTGTATGATGAAAATATATGCATAGTTTGCTATGAT</gDNA_template>
            <first_frame> A  K  L  Q  L  T  Q  A  K  T  R  I  L  R  T  C  L  Q  V  K  Y  *  E  *  A  Q  F  N  S  I  S  V  S  T  I  P  W  S  P  *  I  R  *  A  P  F  D  C  R  L  F  H  L  K  T  F  I  E  F  V  E  M  L  Q  E  D  Q  D  Q  R  Q  A  A  L  E  Y  I  L  N  V  I  V  Y  S  S  V  I  R  K  F  L  Y  T  K  I  M  C  E  I  D  V  T  L  *  N  *  Q  F  *  F  E  S  V  V  L  L  M  V  A  A  L  L  I  K  L  L  G  V  C  D  G  E  I  A  R  N  D  E  T  V  R  R  E  T  D  R  L  I  S  K  A  S  A  S  L  T  Y  G  T  C  D  E  D  D  L  E  S  G  N  C  S  R  S  S  S  S  E  D  L  Y  D  E  N  I  C  I  V  C  Y  D </first_frame>
            <second_frame>  Q  N  C  S  S  P  R  Q  K  P  E  S  *  G  H  V  S  K  S  S  T  K  N  K  P  N  S  T  Q  F  Q  S  V  P  Y  P  G  L  L  K  S  G  K  P  L  L  I  V  D  Y  F  I  *  K  L  S  S  N  L  L  K  C  Y  R  K  I  K  I  N  D  R  L  H  *  S  T  F  L  M  L  L  F  T  P  L  L  S  V  S  F  Y  T  Q  K  S  C  V  K  L  M  L  L  Y  E  I  N  N  S  D  L  N  Q  W  C  C  *  W  L  R  R  C  *  L  N  Y  L  E  F  V  M  A  K  L  Q  E  M  M  K  L  *  E  E  K  R  T  D  *  Y  R  K  Q  V  L  L  *  H  T  E  H  V  M  K  M  I  W  N  R  E  I  A  V  V  L  V  P  L  R  I  C  M  M  K  I  Y  A  *  F  A  M   </second_frame>
            <third_frame>   K  I  A  A  H  P  G  K  N  P  N  L  K  D  M  S  P  S  Q  V  L  R  I  S  P  I  Q  L  N  F  S  Q  Y  H  T  L  V  S  L  N  Q  V  S  P  F  *  L  S  I  I  S  S  K  N  F  H  R  I  C  *  N  V  T  G  R  S  R  S  T  T  G  C  I  R  V  H  S  *  C  Y  C  L  L  L  C  Y  P  *  V  S  I  H  K  N  H  V  *  N  *  C  Y  S  M  K  L  T  I  L  I  *  I  S  G  V  A  D  G  C  G  V  V  N  *  I  T  W  S  L  *  W  R  N  C  K  K  *  *  N  C  E  K  R  N  G  Q  I  D  I  E  S  K  C  F  F  D  I  R  N  M  *  *  R  *  F  G  I  G  K  L  Q  S  F  *  F  L  *  G  F  V  *  *  K  Y  M  H  S  L  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7140" stop="7382"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESVVLLMVAALLIKLLGVCDGEIARNDETVRRETDRLISKASASLTYGTCDEDDLESGNCSRSSSSEDLYDENICIVCYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="6664" e_stop="7074"/>
            <exon e_start="7150" e_stop="7234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6664" e_stop="7074" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.968">
            <gDNA_intron_boundary i_start="7075" i_stop="7149" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7150" e_stop="7234" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="7074"/>
              <exon start="7150" stop="7234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTCGATAAAATTACAAACTTCCATATATGTCATCAAAAAATAAATAATGCGTAATCTCTACGAAAGCTTCAACAGTACGTCAACTCATTTCTTTTCAAAATAATGCCCCTTGAGTTACACCTCAATTAATACACCCAGGTAGGAGGCAAAATTGCAGCTCACCCAGGCAAAAACCCGAATCTTAAGGACATGTCTCCAAGTCAAGTACTAAGAATAAGCCCAATTCAACTCAATTTCAGTCAGTACCATACCCTGGTCTCCTTAAATCAGGTAAGCCCCTTTTGATTGTCGATTATTTCATCTAAAAACTTTCATCGAATTTGTTGAAATGTTACAGGAAGATCAAGATCAACGACAGGCTGCATTAGAGTACATTCTTAATGTTATTGTTTACTCCTCTGTTATCC : TGGTGTTGCTGATGGTTGCGGCGTTGTTAATTAAATTACTTGGAGTTTGTGATGGCGAAATTGCAAGAAATGATGAAACTGTGAG</gDNA_template>
            <first_frame> R  I  R  *  N  Y  K  L  P  Y  M  S  S  K  N  K  *  C  V  I  S  T  K  A  S  T  V  R  Q  L  I  S  F  Q  N  N  A  P  *  V  T  P  Q  L  I  H  P  G  R  R  Q  N  C  S  S  P  R  Q  K  P  E  S  *  G  H  V  S  K  S  S  T  K  N  K  P  N  S  T  Q  F  Q  S  V  P  Y  P  G  L  L  K  S  G  K  P  L  L  I  V  D  Y  F  I  *  K  L  S  S  N  L  L  K  C  Y  R  K  I  K  I  N  D  R  L  H  *  S  T  F  L  M  L  L  F  T  P  L  L  S  :  W  C  C  *  W  L  R  R  C  *  L  N  Y  L  E  F  V  M  A  K  L  Q  E  M  M  K  L  *  </first_frame>
            <second_frame>  E  F  D  K  I  T  N  F  H  I  C  H  Q  K  I  N  N  A  *  S  L  R  K  L  Q  Q  Y  V  N  S  F  L  F  K  I  M  P  L  E  L  H  L  N  *  Y  T  Q  V  G  G  K  I  A  A  H  P  G  K  N  P  N  L  K  D  M  S  P  S  Q  V  L  R  I  S  P  I  Q  L  N  F  S  Q  Y  H  T  L  V  S  L  N  Q  V  S  P  F  *  L  S  I  I  S  S  K  N  F  H  R  I  C  *  N  V  T  G  R  S  R  S  T  T  G  C  I  R  V  H  S  *  C  Y  C  L  L  L  C  Y  P :   G  V  A  D  G  C  G  V  V  N  *  I  T  W  S  L  *  W  R  N  C  K  K  *  *  N  C  E </second_frame>
            <third_frame>   N  S  I  K  L  Q  T  S  I  Y  V  I  K  K  *  I  M  R  N  L  Y  E  S  F  N  S  T  S  T  H  F  F  S  K  *  C  P  L  S  Y  T  S  I  N  T  P  R  *  E  A  K  L  Q  L  T  Q  A  K  T  R  I  L  R  T  C  L  Q  V  K  Y  *  E  *  A  Q  F  N  S  I  S  V  S  T  I  P  W  S  P  *  I  R  *  A  P  F  D  C  R  L  F  H  L  K  T  F  I  E  F  V  E  M  L  Q  E  D  Q  D  Q  R  Q  A  A  L  E  Y  I  L  N  V  I  V  Y  S  S  V  I   : L  V  L  L  M  V  A  A  L  L  I  K  L  L  G  V  C  D  G  E  I  A  R  N  D  E  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6942" stop="7074"/>
                    <exon start="7150" stop="7232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APFDCRLFHLKTFIEFVEMLQEDQDQRQAALEYILNVIVYSSVILVLLMVAALLIKLLGVCDGEIARNDETV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7164" PGL_stop="6813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7164" e_stop="6813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="7164" e_stop="6813" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7164" stop="6813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATCAGCAACACCACTGATTCAAATCAGAATTGTTAATTTCATAGAGTAACATCAATTTCACACATGATTTTTGTGTATAGAAACTTACGGATAACAGAGGAGTAAACAATAACATTAAGAATGTACTCTAATGCAGCCTGTCGTTGATCTTGATCTTCCTGTAACATTTCAACAAATTCGATGAAAGTTTTTAGATGAAATAATCGACAATCAAAAGGGGCTTACCTGATTTAAGGAGACCAGGGTATGGTACTGACTGAAATTGAGTTGAATTGGGCTTATTCTTAGTACTTGACTTGGAGACATGTCCTTAAGATTCGGGTTTTTGCCTGGGTGAGCTGCAATTTTGC</gDNA_template>
            <first_frame> P  S  A  T  P  L  I  Q  I  R  I  V  N  F  I  E  *  H  Q  F  H  T  *  F  L  C  I  E  T  Y  G  *  Q  R  S  K  Q  *  H  *  E  C  T  L  M  Q  P  V  V  D  L  D  L  P  V  T  F  Q  Q  I  R  *  K  F  L  D  E  I  I  D  N  Q  K  G  L  T  *  F  K  E  T  R  V  W  Y  *  L  K  L  S  *  I  G  L  I  L  S  T  *  L  G  D  M  S  L  R  F  G  F  L  P  G  *  A  A  I  L  </first_frame>
            <second_frame>  H  Q  Q  H  H  *  F  K  S  E  L  L  I  S  *  S  N  I  N  F  T  H  D  F  C  V  *  K  L  T  D  N  R  G  V  N  N  N  I  K  N  V  L  *  C  S  L  S  L  I  L  I  F  L  *  H  F  N  K  F  D  E  S  F  *  M  K  *  S  T  I  K  R  G  L  P  D  L  R  R  P  G  Y  G  T  D  *  N  *  V  E  L  G  L  F  L  V  L  D  L  E  T  C  P  *  D  S  G  F  C  L  G  E  L  Q  F  C </second_frame>
            <third_frame>   I  S  N  T  T  D  S  N  Q  N  C  *  F  H  R  V  T  S  I  S  H  M  I  F  V  Y  R  N  L  R  I  T  E  E  *  T  I  T  L  R  M  Y  S  N  A  A  C  R  *  S  *  S  S  C  N  I  S  T  N  S  M  K  V  F  R  *  N  N  R  Q  S  K  G  A  Y  L  I  *  G  D  Q  G  M  V  L  T  E  I  E  L  N  W  A  Y  S  *  Y  L  T  W  R  H  V  L  K  I  R  V  F  A  W  V  S  C  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12753" PGL_stop="16678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12753" e_stop="13371"/>
            <exon e_start="14118" e_stop="14254"/>
            <exon e_start="14375" e_stop="15027"/>
            <exon e_start="15966" e_stop="16678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.868" e_score="0.997"/>
          <exon-intron don_prob="0.874" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12753" e_stop="13371" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.868">
            <gDNA_intron_boundary i_start="13372" i_stop="14117" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14118" e_stop="14254" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.874" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14255" i_stop="14374" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14375" e_stop="15027" e_length="653"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15028" i_stop="15965" i_length="938"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="15966" e_stop="16678" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12753" stop="13341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12791" stop="13371"/>
              <exon start="14118" stop="14218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12791" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12791" stop="13297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12798" stop="13328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12801" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12848" stop="13371"/>
              <exon start="14118" stop="14254"/>
              <exon start="14375" stop="15027"/>
              <exon start="15966" stop="16181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14387" stop="15027"/>
              <exon start="15966" stop="16186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14686" stop="15027"/>
              <exon start="15966" stop="16266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14693" stop="15027"/>
              <exon start="15966" stop="16419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14773" stop="15027"/>
              <exon start="15966" stop="16168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14773" stop="15027"/>
              <exon start="15966" stop="16033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14971" stop="15027"/>
              <exon start="15966" stop="16434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14989" stop="15027"/>
              <exon start="15966" stop="16158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14989" stop="15027"/>
              <exon start="15966" stop="16158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14989" stop="15027"/>
              <exon start="15966" stop="16158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16255" stop="16678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACCGAACTCACCTGTAACTTTTTTAACCGCAAAATCTCTTCTCTTCTCTTCTCTTCTCCGTAATATTAATTAATAAAATAAATAAATAAATAAATGCCTCTAAACGATGAAGAAGAACACCACCAATTGTTGGCGGATAGATTACTCGAGGAAGAATCTGCCTATGAGTACTCCGACAAAGTCCATATTATCGGAGTCGACGATGATGATGATTTCACCAAAACTCCTCCTTTTTCCTGGAAAAAACTATGGGCTTTTACTGGACCGGGTTTCTTGATGAGTATAGCCTTTTTGGATCCGGGAAATCTTGAAGGAGATCTTCAGGCAGGGGCTATCGCTGGGTATTCTCTGTTATGGCTACTCTTTTGGGCTACGGCTATGGGATTACTTGTTCAGCTTTTAGCGGCTCGTTTGGGTGTCGCTACTTCTAGGCATTTGGCTGAGCTATGTAGGGATGAGTATCCGAAATGGGCTCGATTGCTTTTGTGGGTCATGACCGAATTGGCTCTAATTGGGGCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATAAAGATTTTGAGTCGAGGGTTCTTGCCTCTATGGTCTGGTGTTGTCATCACTGCTCTTGATTG : CTTTGTATTCTTATTTCTTGAGAACTATGGAGTGAGGAAGCTGGAAGCACTCTTTGCTGTCCTTATTGCAGTTATGGCCGTCTCATTTGCATGGATGTTTGGAGAGACGAAACCAAATGGAGTGGAACTTCTTGTTG : GTGTGGTGGTCCCAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAG : GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCAGCAGTTTTAGATTTTGGTGGAAAATAAACAAACTGTCCTCAGCTAATCTCAAGTTTGTTCTTTGGAATTCTGTTTAGACTTCTTAGGGATTTCGTTATTTTCTTGCATTCAAATCTTCCTGTATTGGCTAAAGTCCACAGACTTCTGGCCTTCAAATGCATAACTGATTTTAAATTCAGCCTACAAAACTGTAATTCCTTCAATTGGGCCAAGAATGAATTGTGGCTGTGTAGTAAATTACAGCCCAATGTATTAATCAC</gDNA_template>
            <first_frame> E  P  N  S  P  V  T  F  L  T  A  K  S  L  L  F  S  S  L  L  R  N  I  N  *  *  N  K  *  I  N  K  C  L  *  T  M  K  K  N  T  T  N  C  W  R  I  D  Y  S  R  K  N  L  P  M  S  T  P  T  K  S  I  L  S  E  S  T  M  M  M  I  S  P  K  L  L  L  F  P  G  K  N  Y  G  L  L  L  D  R  V  S  *  *  V  *  P  F  W  I  R  E  I  L  K  E  I  F  R  Q  G  L  S  L  G  I  L  C  Y  G  Y  S  F  G  L  R  L  W  D  Y  L  F  S  F  *  R  L  V  W  V  S  L  L  L  G  I  W  L  S  Y  V  G  M  S  I  R  N  G  L  D  C  F  C  G  S  *  P  N  W  L  *  L  G  L  I  F  K  R  L  L  E  V  L  L  L  *  R  F  *  V  E  G  S  C  L  Y  G  L  V  L  S  S  L  L  L  I   : A  L  Y  S  Y  F  L  R  T  M  E  *  G  S  W  K  H  S  L  L  S  L  L  Q  L  W  P  S  H  L  H  G  C  L  E  R  R  N  Q  M  E  W  N  F  L  L  :  V  W  W  S  Q  N  L  A  P  K  Q  *  S  R  Q  W  E  L  *  G  V  L  S  C  L  T  M  C  F  Y  I  R  R  *  C  S  P  E  T  L  T  T  V  R  L  A  E  F  E  K  H  L  I  T  T  P  *  S  R  Q  L  P  W  Q  F  H  S  *  S  I  C  L  L  Q  Q  C  S  Q  S  H  F  M  V  V  K  *  P  I  A  L  A  *  K  M  L  V  N  I  F  R  I  S  M  V  G  D  R  S  P  S  F  I  S  G  L  L  D  C  W  L  L  D  R  V  V  L  *  L  V  L  M  L  D  N  L  L  W  E  V  F  C  T  *  G  *  K  N  G  R  E  R  *  *  Q  E  V  V  L  S  S  Q  L  *  *  L  L  L  L  L  T  P  L  R  N  H  *  M  F  *  T  S  G  S  T  F  F  S  V  S  K  S  L  L  P  *  S  P  F  F  V  L  Y  P  E  K  K  S  W  V  F  S  R  L  A  L  L  *  R :   *  Y  H  G  *  *  L  C  W  L  C  *  L  M  A  I  F  *  W  T  L  Y  L  L  L  S  V  G  C  C  L  H  L  L  *  L  L  L  Q  V  H  T  L  P  S  L  Y  T  S  F  H  G  E  L  P  S  P  I  G  L  *  K  T  K  V  S  R  A  *  I  I  D  I  C  S  *  Q  K  A  E  I  M  L  Y  P  C  S  P  S  *  V  F  I  A  F  P  I  S  F  L  *  E  V  L  D  C  W  V  C  S  K  *  A  L  R  V  S  L  L  *  L  H  P  M  F  F  G  Y  D  *  L  R  R  *  L  *  H  L  H  *  E  N  *  L  E  L  V  I  L  I  Q  Q  F  *  I  L  V  E  N  K  Q  T  V  L  S  *  S  Q  V  C  S  L  E  F  C  L  D  F  L  G  I  S  L  F  S  C  I  Q  I  F  L  Y  W  L  K  S  T  D  F  W  P  S  N  A  *  L  I  L  N  S  A  Y  K  T  V  I  P  S  I  G  P  R  M  N  C  G  C  V  V  N  Y  S  P  M  Y  *  S  </first_frame>
            <second_frame>  N  R  T  H  L  *  L  F  *  P  Q  N  L  F  S  S  L  L  F  S  V  I  L  I  N  K  I  N  K  *  I  N  A  S  K  R  *  R  R  T  P  P  I  V  G  G  *  I  T  R  G  R  I  C  L  *  V  L  R  Q  S  P  Y  Y  R  S  R  R  *  *  *  F  H  Q  N  S  S  F  F  L  E  K  T  M  G  F  Y  W  T  G  F  L  D  E  Y  S  L  F  G  S  G  K  S  *  R  R  S  S  G  R  G  Y  R  W  V  F  S  V  M  A  T  L  L  G  Y  G  Y  G  I  T  C  S  A  F  S  G  S  F  G  C  R  Y  F  *  A  F  G  *  A  M  *  G  *  V  S  E  M  G  S  I  A  F  V  G  H  D  R  I  G  S  N  W  G  *  Y  S  R  G  Y  W  K  C  Y  C  Y  K  D  F  E  S  R  V  L  A  S  M  V  W  C  C  H  H  C  S  *  L  :  L  C  I  L  I  S  *  E  L  W  S  E  E  A  G  S  T  L  C  C  P  Y  C  S  Y  G  R  L  I  C  M  D  V  W  R  D  E  T  K  W  S  G  T  S  C  W :   C  G  G  P  K  T  *  L  Q  N  N  K  A  G  S  G  N  C  R  V  C  Y  H  A  S  Q  C  V  S  T  F  G  A  S  A  V  Q  R  H  *  Q  P  *  D  W  Q  S  S  R  S  T  *  L  L  L  H  R  V  D  N  C  L  G  N  F  I  H  D  Q  F  V  C  Y  N  S  V  R  K  V  I  L  W  *  *  N  S  Q  *  H  W  P  R  K  C  W  S  I  S  S  G  *  V  W  W  G  I  V  P  H  P  L  Y  L  G  Y  W  I  V  G  C  W  T  E  *  Y  Y  N  W  Y  L  C  W  T  I  Y  Y  G  R  F  S  A  H  E  V  E  K  M  A  E  S  V  N  N  K  K  L  C  Y  R  P  N  S  D  S  C  S  C  F  *  H  L  *  E  I  I  R  C  S  E  R  V  A  Q  R  S  S  V  C  P  N  P  F  C  P  D  P  P  S  L  S  C  I  Q  R  R  N  H  G  C  F  Q  D  W  L  Y  Y  E   : G  D  I  M  A  S  S  C  A  G  Y  A  D  *  W  L  S  F  D  G  L  F  I  F  C  C  Q  W  D  V  V  Y  I  C  C  S  C  F  Y  R  C  I  H  C  L  H  C  I  P  H  F  T  G  N  Y  L  P  Q  L  V  C  K  K  Q  K  Y  L  E  H  R  *  L  I  Y  V  L  S  R  K  L  R  S  C  C  T  L  V  A  R  V  K  Y  L  *  P  S  P  F  L  S  F  K  K  C  W  I  V  G  S  A  Q  S  K  H  *  E  *  V  C  C  D  Y  I  P  C  F  L  G  M  T  N  *  D  G  D  C  S  T  C  I  R  K  I  S  *  S  L  *  Y  *  S  S  S  F  R  F  W  W  K  I  N  K  L  S  S  A  N  L  K  F  V  L  W  N  S  V  *  T  S  *  G  F  R  Y  F  L  A  F  K  S  S  C  I  G  *  S  P  Q  T  S  G  L  Q  M  H  N  *  F  *  I  Q  P  T  K  L  *  F  L  Q  L  G  Q  E  *  I  V  A  V  *  *  I  T  A  Q  C  I  N  H </second_frame>
            <third_frame>   T  E  L  T  C  N  F  F  N  R  K  I  S  S  L  L  F  S  S  P  *  Y  *  L  I  K  *  I  N  K  *  M  P  L  N  D  E  E  E  H  H  Q  L  L  A  D  R  L  L  E  E  E  S  A  Y  E  Y  S  D  K  V  H  I  I  G  V  D  D  D  D  D  F  T  K  T  P  P  F  S  W  K  K  L  W  A  F  T  G  P  G  F  L  M  S  I  A  F  L  D  P  G  N  L  E  G  D  L  Q  A  G  A  I  A  G  Y  S  L  L  W  L  L  F  W  A  T  A  M  G  L  L  V  Q  L  L  A  A  R  L  G  V  A  T  S  R  H  L  A  E  L  C  R  D  E  Y  P  K  W  A  R  L  L  L  W  V  M  T  E  L  A  L  I  G  A  D  I  Q  E  V  I  G  S  A  I  A  I  K  I  L  S  R  G  F  L  P  L  W  S  G  V  V  I  T  A  L  D  C :   F  V  F  L  F  L  E  N  Y  G  V  R  K  L  E  A  L  F  A  V  L  I  A  V  M  A  V  S  F  A  W  M  F  G  E  T  K  P  N  G  V  E  L  L  V   : G  V  V  V  P  K  L  S  S  K  T  I  K  Q  A  V  G  I  V  G  C  V  I  M  P  H  N  V  F  L  H  S  A  L  V  Q  S  R  D  I  D  N  R  K  I  G  R  V  R  E  A  L  N  Y  Y  S  I  E  S  T  I  A  L  A  I  S  F  M  I  N  L  F  V  T  T  V  F  A  K  S  F  Y  G  S  E  I  A  N  S  I  G  L  E  N  A  G  Q  Y  L  Q  D  K  Y  G  G  G  S  F  P  I  L  Y  I  W  A  I  G  L  L  A  A  G  Q  S  S  T  I  T  G  T  Y  A  G  Q  F  I  M  G  G  F  L  H  M  R  L  K  K  W  Q  R  A  L  I  T  R  S  C  A  I  V  P  T  L  I  V  A  L  A  F  D  T  S  E  K  S  L  D  V  L  N  E  W  L  N  V  L  Q  C  V  Q  I  P  F  A  L  I  P  L  L  C  L  V  S  R  E  E  I  M  G  V  F  K  I  G  S  T  M  K  :  V  I  S  W  L  V  A  V  L  V  M  L  I  N  G  Y  L  L  M  D  S  L  S  S  A  V  S  G  M  L  F  T  S  V  V  V  A  F  T  G  A  Y  I  A  F  I  V  Y  L  I  S  R  G  I  T  F  P  N  W  F  V  K  N  K  S  I  S  S  I  D  N  *  Y  M  F  L  A  E  S  *  D  H  V  V  P  L  *  P  E  L  S  I  Y  S  L  P  H  F  F  P  L  R  S  V  G  L  L  G  L  L  K  V  S  I  K  S  E  F  A  V  I  T  S  H  V  F  W  V  *  L  I  E  T  V  T  V  A  P  A  L  G  K  L  V  R  A  C  N  I  D  P  A  V  L  D  F  G  G  K  *  T  N  C  P  Q  L  I  S  S  L  F  F  G  I  L  F  R  L  L  R  D  F  V  I  F  L  H  S  N  L  P  V  L  A  K  V  H  R  L  L  A  F  K  C  I  T  D  F  K  F  S  L  Q  N  C  N  S  F  N  W  A  K  N  E  L  W  L  C  S  K  L  Q  P  N  V  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12848" stop="13371"/>
                    <exon start="14118" stop="14254"/>
                    <exon start="14375" stop="15027"/>
                    <exon start="15966" stop="16181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPLNDEEEHHQLLADRLLEEESAYEYSDKVHIIGVDDDDDFTKTPPFSWKKLWAFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLFWATAMGLLVQLLAARLGVATSRHLAELCRDEYPKWARLLLWVMTELALIGADIQEVIGSAIAIKILSRGFLPLWSGVVITALDCFVFLFLENYGVRKLEALFAVLIAVMAVSFAWMFGETKPNGVELLVGVVVPKLSSKTIKQAVGIVGCVIMPHNVFLHSALVQSRDIDNRKIGRVREALNYYSIESTIALAISFMINLFVTTVFAKSFYGSEIANSIGLENAGQYLQDKYGGGSFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLHMRLKKWQRALITRSCAIVPTLIVALAFDTSEKSLDVLNEWLNVLQCVQIPFALIPLLCLVSREEIMGVFKIGSTMKVISWLVAVLVMLINGYLLMDSLSSAVSGMLFTSVVVAFTGAYIAFIVYLISRGITFPNWFVKNKSISSIDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16446" stop="16676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNCPQLISSLFFGILFRLLRDFVIFLHSNLPVLAKVHRLLAFKCITDFKFSLQNCNSFNWAKNELWLCSKLQPNVLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15636" e_stop="15758"/>
            <exon e_start="15966" e_stop="16678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.133" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15636" e_stop="15758" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.133" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15759" i_stop="15965" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15966" e_stop="16678" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15636" stop="15758"/>
              <exon start="15966" stop="16418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15636" stop="15758"/>
              <exon start="15966" stop="16409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16255" stop="16678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTCCTACATTTTATCTTGATCACTTGATTCAATTGACTGAATAGTTTCCACGGAGCTGCTATGGGCGTACATGCATAGTGTTATGCAGATTGAGAGCCTTGCTTGTTAATTTTATCAG : GTGATATCATGGCTAGTAGCTGTGCTGGTTATGCTGATTAATGGCTATCTTTTGATGGACTCTTTATCTTCTGCTGTCAGTGGGATGTTGTTTACATCTGTTGTAGTTGCTTTTACAGGTGCATACATTGCCTTCATTGTATACCTCATTTCACGGGGAATTACCTTCCCCAATTGGTTTGTAAAAAACAAAAGTATCTCGAGCATAGATAATTGATATATGTTCTTAGCAGAAAGCTGAGATCATGTTGTACCCTTGTAGCCCGAGTTAAGTATTTATAGCCTTCCCCATTTCTTTCCTTTAAGAAGTGTTGGATTGTTGGGTCTGCTCAAAGTAAGCATTAAGAGTGAGTTTGCTGTGATTACATCCCATGTTTTTTGGGTATGACTAATTGAGACGGTGACTGTAGCACCTGCATTAGGAAAATTAGTTAGAGCTTGTAATATTGATCCAGCAGTTTTAGATTTTGGTGGAAAATAAACAAACTGTCCTCAGCTAATCTCAAGTTTGTTCTTTGGAATTCTGTTTAGACTTCTTAGGGATTTCGTTATTTTCTTGCATTCAAATCTTCCTGTATTGGCTAAAGTCCACAGACTTCTGGCCTTCAAATGCATAACTGATTTTAAATTCAGCCTACAAAACTGTAATTCCTTCAATTGGGCCAAGAATGAATTGTGGCTGTGTAGTAAATTACAGCCCAATGTATTAATCAC</gDNA_template>
            <first_frame> K  I  S  Y  I  L  S  *  S  L  D  S  I  D  *  I  V  S  T  E  L  L  W  A  Y  M  H  S  V  M  Q  I  E  S  L  A  C  *  F  Y  Q  :  V  I  S  W  L  V  A  V  L  V  M  L  I  N  G  Y  L  L  M  D  S  L  S  S  A  V  S  G  M  L  F  T  S  V  V  V  A  F  T  G  A  Y  I  A  F  I  V  Y  L  I  S  R  G  I  T  F  P  N  W  F  V  K  N  K  S  I  S  S  I  D  N  *  Y  M  F  L  A  E  S  *  D  H  V  V  P  L  *  P  E  L  S  I  Y  S  L  P  H  F  F  P  L  R  S  V  G  L  L  G  L  L  K  V  S  I  K  S  E  F  A  V  I  T  S  H  V  F  W  V  *  L  I  E  T  V  T  V  A  P  A  L  G  K  L  V  R  A  C  N  I  D  P  A  V  L  D  F  G  G  K  *  T  N  C  P  Q  L  I  S  S  L  F  F  G  I  L  F  R  L  L  R  D  F  V  I  F  L  H  S  N  L  P  V  L  A  K  V  H  R  L  L  A  F  K  C  I  T  D  F  K  F  S  L  Q  N  C  N  S  F  N  W  A  K  N  E  L  W  L  C  S  K  L  Q  P  N  V  L  I   </first_frame>
            <second_frame>  K  S  P  T  F  Y  L  D  H  L  I  Q  L  T  E  *  F  P  R  S  C  Y  G  R  T  C  I  V  L  C  R  L  R  A  L  L  V  N  F  I  R :   *  Y  H  G  *  *  L  C  W  L  C  *  L  M  A  I  F  *  W  T  L  Y  L  L  L  S  V  G  C  C  L  H  L  L  *  L  L  L  Q  V  H  T  L  P  S  L  Y  T  S  F  H  G  E  L  P  S  P  I  G  L  *  K  T  K  V  S  R  A  *  I  I  D  I  C  S  *  Q  K  A  E  I  M  L  Y  P  C  S  P  S  *  V  F  I  A  F  P  I  S  F  L  *  E  V  L  D  C  W  V  C  S  K  *  A  L  R  V  S  L  L  *  L  H  P  M  F  F  G  Y  D  *  L  R  R  *  L  *  H  L  H  *  E  N  *  L  E  L  V  I  L  I  Q  Q  F  *  I  L  V  E  N  K  Q  T  V  L  S  *  S  Q  V  C  S  L  E  F  C  L  D  F  L  G  I  S  L  F  S  C  I  Q  I  F  L  Y  W  L  K  S  T  D  F  W  P  S  N  A  *  L  I  L  N  S  A  Y  K  T  V  I  P  S  I  G  P  R  M  N  C  G  C  V  V  N  Y  S  P  M  Y  *  S  </second_frame>
            <third_frame>   N  L  L  H  F  I  L  I  T  *  F  N  *  L  N  S  F  H  G  A  A  M  G  V  H  A  *  C  Y  A  D  *  E  P  C  L  L  I  L  S   : G  D  I  M  A  S  S  C  A  G  Y  A  D  *  W  L  S  F  D  G  L  F  I  F  C  C  Q  W  D  V  V  Y  I  C  C  S  C  F  Y  R  C  I  H  C  L  H  C  I  P  H  F  T  G  N  Y  L  P  Q  L  V  C  K  K  Q  K  Y  L  E  H  R  *  L  I  Y  V  L  S  R  K  L  R  S  C  C  T  L  V  A  R  V  K  Y  L  *  P  S  P  F  L  S  F  K  K  C  W  I  V  G  S  A  Q  S  K  H  *  E  *  V  C  C  D  Y  I  P  C  F  L  G  M  T  N  *  D  G  D  C  S  T  C  I  R  K  I  S  *  S  L  *  Y  *  S  S  S  F  R  F  W  W  K  I  N  K  L  S  S  A  N  L  K  F  V  L  W  N  S  V  *  T  S  *  G  F  R  Y  F  L  A  F  K  S  S  C  I  G  *  S  P  Q  T  S  G  L  Q  M  H  N  *  F  *  I  Q  P  T  K  L  *  F  L  Q  L  G  Q  E  *  I  V  A  V  *  *  I  T  A  Q  C  I  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16446" stop="16676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNCPQLISSLFFGILFRLLRDFVIFLHSNLPVLAKVHRLLAFKCITDFKFSLQNCNSFNWAKNELWLCSKLQPNVLI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15750" stop="15758"/>
                    <exon start="15966" stop="16181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYQVISWLVAVLVMLINGYLLMDSLSSAVSGMLFTSVVVAFTGAYIAFIVYLISRGITFPNWFVKNKSISSIDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14387" e_stop="15150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="14387" e_stop="15150" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14387" stop="15150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACTTAGCTCCAAAACAATAAAGCAGGCAGTGGGAATTGTAGGGTGTGTTATCATGCCTCACAATGTGTTTCTACATTCGGCGCTAGTGCAGTCCAGAGACATTGACAACCGTAAGATTGGCAGAGTTCGAGAAGCACTTAATTACTACTCCATAGAGTCGACAATTGCCTTGGCAATTTCATTCATGATCAATTTGTTTGTTACAACAGTGTTCGCAAAGTCATTTTATGGTAGTGAAATAGCCAATAGCATTGGCCTAGAAAATGCTGGTCAATATCTTCAGGATAAGTATGGTGGGGGATCGTTCCCCATCCTTTATATCTGGGCTATTGGATTGTTGGCTGCTGGACAGAGTAGTACTATAACTGGTACTTATGCTGGACAATTTATTATGGGAGGTTTTCTGCACATGAGGTTGAAAAAATGGCAGAGAGCGTTAATAACAAGAAGTTGTGCTATCGTCCCAACTCTGATAGTTGCTCTTGCTTTTGACACCTCTGAGAAATCATTAGATGTTCTGAACGAGTGGCTCAACGTTCTTCAGTGTGTCCAAATCCCTTTTGCCCTGATCCCCCTTCTTTGTCTTGTATCCAGAGAAGAAATCATGGGTGTTTTCAAGATTGGCTCTACTATGAAGGTATGTTCGTATCTTCAAACGTTCTGCTTGAATGAACTAATTTTTTAAAAGTTAGAATTGGATCTATTACCTATTCTTTTCCTCTTGAATTTGGAATTCATCCACTTAATAACAAACATTTTA</gDNA_template>
            <first_frame> Q  N  L  A  P  K  Q  *  S  R  Q  W  E  L  *  G  V  L  S  C  L  T  M  C  F  Y  I  R  R  *  C  S  P  E  T  L  T  T  V  R  L  A  E  F  E  K  H  L  I  T  T  P  *  S  R  Q  L  P  W  Q  F  H  S  *  S  I  C  L  L  Q  Q  C  S  Q  S  H  F  M  V  V  K  *  P  I  A  L  A  *  K  M  L  V  N  I  F  R  I  S  M  V  G  D  R  S  P  S  F  I  S  G  L  L  D  C  W  L  L  D  R  V  V  L  *  L  V  L  M  L  D  N  L  L  W  E  V  F  C  T  *  G  *  K  N  G  R  E  R  *  *  Q  E  V  V  L  S  S  Q  L  *  *  L  L  L  L  L  T  P  L  R  N  H  *  M  F  *  T  S  G  S  T  F  F  S  V  S  K  S  L  L  P  *  S  P  F  F  V  L  Y  P  E  K  K  S  W  V  F  S  R  L  A  L  L  *  R  Y  V  R  I  F  K  R  S  A  *  M  N  *  F  F  K  S  *  N  W  I  Y  Y  L  F  F  S  S  *  I  W  N  S  S  T  *  *  Q  T  F   </first_frame>
            <second_frame>  K  T  *  L  Q  N  N  K  A  G  S  G  N  C  R  V  C  Y  H  A  S  Q  C  V  S  T  F  G  A  S  A  V  Q  R  H  *  Q  P  *  D  W  Q  S  S  R  S  T  *  L  L  L  H  R  V  D  N  C  L  G  N  F  I  H  D  Q  F  V  C  Y  N  S  V  R  K  V  I  L  W  *  *  N  S  Q  *  H  W  P  R  K  C  W  S  I  S  S  G  *  V  W  W  G  I  V  P  H  P  L  Y  L  G  Y  W  I  V  G  C  W  T  E  *  Y  Y  N  W  Y  L  C  W  T  I  Y  Y  G  R  F  S  A  H  E  V  E  K  M  A  E  S  V  N  N  K  K  L  C  Y  R  P  N  S  D  S  C  S  C  F  *  H  L  *  E  I  I  R  C  S  E  R  V  A  Q  R  S  S  V  C  P  N  P  F  C  P  D  P  P  S  L  S  C  I  Q  R  R  N  H  G  C  F  Q  D  W  L  Y  Y  E  G  M  F  V  S  S  N  V  L  L  E  *  T  N  F  L  K  V  R  I  G  S  I  T  Y  S  F  P  L  E  F  G  I  H  P  L  N  N  K  H  F  </second_frame>
            <third_frame>   K  L  S  S  K  T  I  K  Q  A  V  G  I  V  G  C  V  I  M  P  H  N  V  F  L  H  S  A  L  V  Q  S  R  D  I  D  N  R  K  I  G  R  V  R  E  A  L  N  Y  Y  S  I  E  S  T  I  A  L  A  I  S  F  M  I  N  L  F  V  T  T  V  F  A  K  S  F  Y  G  S  E  I  A  N  S  I  G  L  E  N  A  G  Q  Y  L  Q  D  K  Y  G  G  G  S  F  P  I  L  Y  I  W  A  I  G  L  L  A  A  G  Q  S  S  T  I  T  G  T  Y  A  G  Q  F  I  M  G  G  F  L  H  M  R  L  K  K  W  Q  R  A  L  I  T  R  S  C  A  I  V  P  T  L  I  V  A  L  A  F  D  T  S  E  K  S  L  D  V  L  N  E  W  L  N  V  L  Q  C  V  Q  I  P  F  A  L  I  P  L  L  C  L  V  S  R  E  E  I  M  G  V  F  K  I  G  S  T  M  K  V  C  S  Y  L  Q  T  F  C  L  N  E  L  I  F  *  K  L  E  L  D  L  L  P  I  L  F  L  L  N  L  E  F  I  H  L  I  T  N  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14389" stop="15075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSSKTIKQAVGIVGCVIMPHNVFLHSALVQSRDIDNRKIGRVREALNYYSIESTIALAISFMINLFVTTVFAKSFYGSEIANSIGLENAGQYLQDKYGGGSFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLHMRLKKWQRALITRSCAIVPTLIVALAFDTSEKSLDVLNEWLNVLQCVQIPFALIPLLCLVSREEIMGVFKIGSTMKVCSYLQTFCLNELIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19654" PGL_stop="17483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19654" e_stop="19017"/>
            <exon e_start="17785" e_stop="17483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19654" e_stop="19017" e_length="638"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19016" i_stop="17786" i_length="1231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17785" e_stop="17483" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19654" stop="19017"/>
              <exon start="17785" stop="17525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19644" stop="19269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19643" stop="19017"/>
              <exon start="17785" stop="17491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19643" stop="19017"/>
              <exon start="17785" stop="17516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19641" stop="19017"/>
              <exon start="17785" stop="17572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19641" stop="19017"/>
              <exon start="17785" stop="17631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19641" stop="19028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19639" stop="19017"/>
              <exon start="17785" stop="17585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19639" stop="19017"/>
              <exon start="17785" stop="17611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19638" stop="19017"/>
              <exon start="17785" stop="17594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19637" stop="19017"/>
              <exon start="17785" stop="17585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19636" stop="19017"/>
              <exon start="17785" stop="17715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19635" stop="19017"/>
              <exon start="17785" stop="17735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19633" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19630" stop="19017"/>
              <exon start="17785" stop="17651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19630" stop="19084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19630" stop="19114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19628" stop="19017"/>
              <exon start="17785" stop="17603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19628" stop="19095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19616" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19601" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19601" stop="19017"/>
              <exon start="17785" stop="17709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19017"/>
              <exon start="17785" stop="17491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19017"/>
              <exon start="17785" stop="17692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19441" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19414" stop="19017"/>
              <exon start="17785" stop="17654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19382" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373286" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19352" stop="19017"/>
              <exon start="17785" stop="17520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19352" stop="19017"/>
              <exon start="17785" stop="17631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19316" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292391" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19185" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19162" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19162" stop="19017"/>
              <exon start="17785" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACAATCAATACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG : AGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTATATAGATTTCATTTGTTTATTTGTCC</gDNA_template>
            <first_frame> H  T  I  N  T  H  T  L  S  F  S  L  F  L  V  Y  I  F  F  *  L  P  W  I  E  N  L  Y  F  *  Y  Q  F  C  A  L  *  W  Q  V  S  R  V  R  H  L  P  Q  H  P  L  V  L  R  L  V  L  L  H  Q  L  L  H  Q  L  S  R  K  L  L  L  P  Q  Q  H  Q  P  R  P  H  L  Q  L  F  L  L  L  Q  *  P  L  Q  L  L  L  P  L  H  L  L  L  L  H  P  Y  Q  H  Q  Q  V  L  H  H  L  K  H  Q  Q  V  L  H  Q  Y  N  L  H  Q  L  Q  L  Q  R  *  L  H  R  Q  L  F  L  L  H  R  L  Q  L  Q  L  L  H  L  L  L  R  R  Q  L  Q  L  R  L  L  A  K  E  K  *  R  E  R  R  E  R  N  T  M  H  H  Q  H  L  L  P  I  *  *  A  H  L  H  L  L  P  K  L  L  D  L  A  W  T  P  I  Q  L  P  A  H  L  L  T  M  R :   V  E  Q  R  N  *  R  C  W  E  V  W  *  L  D  G  L  *  *  A  G  S  C  S  K  E  F  K  T  Y  F  D  I  *  H  V  *  F  I  F  W  L  F  M  V  K  G  S  S  F  G  S  A  *  R  F  G  H  I  A  S  F  F  L  Y  S  F  V  E  C  K  G  R  D  L  Y  *  S  S  L  L  Y  S  F  L  D  S  H  F  P  L  L  Y  R  F  H  L  F  I  C   </first_frame>
            <second_frame>  T  Q  S  I  H  T  H  S  L  F  L  Y  F  W  S  I  F  S  F  S  Y  H  G  *  K  I  C  I  S  S  I  N  F  V  H  C  S  G  K  C  H  G  S  D  T  C  R  S  T  R  W  C  *  G  W  Y  Y  S  T  S  C  C  T  N  *  A  E  N  S  C  S  R  N  S  T  S  L  G  P  T  Y  S  C  S  C  C  S  S  N  R  S  S  Y  C  S  H  Y  T  C  C  C  C  T  R  I  S  T  S  K  F  S  T  T  *  S  T  S  K  F  S  T  S  T  I  S  T  S  S  S  S  R  G  S  Y  T  A  S  C  F  Y  S  T  G  C  S  S  S  C  C  T  C  C  F  G  D  N  S  S  S  G  S  *  Q  R  K  S  K  G  K  E  G  K  E  T  Q  C  I  T  S  T  F  S  R  Y  D  E  P  T  C  T  S  F  R  S  S  W  T  *  H  G  L  R  F  S  S  Q  P  I  S  *  R  *   : E  W  S  R  E  I  E  D  A  G  K  F  G  S  W  M  G  C  D  E  L  A  L  V  L  K  S  S  K  H  I  L  I  F  D  M  Y  N  L  S  F  G  Y  L  W  *  R  G  P  H  L  D  L  L  R  D  L  A  T  L  P  P  F  F  Y  I  L  S  W  S  V  R  V  E  I  C  T  S  L  H  Y  F  T  P  F  W  T  R  T  F  L  Y  Y  I  D  F  I  C  L  F  V  </second_frame>
            <third_frame>   H  N  Q  Y  T  H  T  L  F  F  S  I  F  G  L  Y  F  L  L  A  T  M  D  R  K  F  V  F  L  V  S  I  L  C  I  V  V  A  S  V  T  G  Q  T  P  A  A  A  P  V  G  A  K  A  G  T  T  P  P  A  A  A  P  T  K  P  K  T  P  A  P  A  T  A  P  A  S  A  P  P  T  A  V  P  V  A  P  V  T  A  P  V  T  A  P  T  T  P  V  V  A  A  P  V  S  A  P  A  S  S  P  P  L  K  A  P  A  S  S  P  P  V  Q  S  P  P  A  P  A  P  E  V  A  T  P  P  A  V  S  T  P  P  A  A  A  P  V  A  A  P  V  A  S  E  T  T  P  A  P  A  P  S  K  G  K  V  K  G  K  K  G  K  K  H  N  A  S  P  A  P  S  P  D  M  M  S  P  P  A  P  P  S  E  A  P  G  P  S  M  D  S  D  S  A  P  S  P  S  L  N  D  E  :  S  G  A  E  K  L  K  M  L  G  S  L  V  A  G  W  A  V  M  S  W  L  L  F  *  R  V  Q  N  I  F  *  Y  L  T  C  I  I  Y  L  L  V  I  Y  G  E  G  V  L  I  W  I  C  L  E  I  W  P  H  C  L  L  F  F  I  F  F  R  G  V  *  G  *  R  F  V  L  V  F  T  T  L  L  L  F  G  L  A  L  S  S  I  I  *  I  S  F  V  Y  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19652" stop="19017"/>
                    <exon start="17785" stop="17711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNQYTHTLFFSIFGLYFLLATMDRKFVFLVSILCIVVASVTGQTPAAAPVGAKAGTTPPAAAPTKPKTPAPATAPASAPPTAVPVAPVTAPVTAPTTPVVAAPVSAPASSPPLKAPASSPPVQSPPAPAPEVATPPAVSTPPAAAPVAAPVASETTPAPAPSKGKVKGKKGKKHNASPAPSPDMMSPPAPPSEAPGPSMDSDSAPSPSLNDESGAEKLKMLGSLVAGWAVMSWLLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19644" e_stop="19017"/>
            <exon e_start="18617" e_stop="18455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="19644" e_stop="19017" e_length="628"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="19016" i_stop="18618" i_length="399"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18617" e_stop="18455" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19644" stop="19269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19641" stop="19028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19637" stop="19017"/>
              <exon start="18617" stop="18455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19637" stop="19017"/>
              <exon start="18617" stop="18455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19630" stop="19084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19630" stop="19114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19628" stop="19095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACACACACACTCTCTTTTTCTCTATTTTTGGTCTATATTTTCTTTTAGCTACCATGGATAGAAAATTTGTATTTCTAGTATCAATTTTGTGCATTGTAGTGGCAAGTGTCACGGGTCAGACACCTGCCGCAGCACCCGTTGGTGCTAAGGCTGGTACTACTCCACCAGCTGCTGCACCAACTAAGCCGAAAACTCCTGCTCCCGCAACAGCACCAGCCTCGGCCCCACCTACAGCTGTTCCTGTTGCTCCAGTAACCGCTCCAGTTACTGCTCCCACTACACCTGTTGTTGCTGCACCCGTATCAGCACCAGCAAGTTCTCCACCACTTAAAGCACCAGCAAGTTCTCCACCAGTACAATCTCCACCAGCTCCAGCTCCAGAGGTAGCTACACCGCCAGCTGTTTCTACTCCACCGGCTGCAGCTCCAGTTGCTGCACCTGTTGCTTCGGAGACAACTCCAGCTCCGGCTCCTAGCAAAGGAAAAGTAAAGGGAAAGAAGGGAAAGAAACACAATGCATCACCAGCACCTTCTCCCGATATGATGAGCCCACCTGCACCTCCTTCCGAAGCTCCTGGACCTAGCATGGACTCCGATTCAGCTCCCAGCCCATCTCTTAACGATGAG : GCGGGTCTATCAGTTGTTCATGATGACTTGTGAAGATGTGACTTTAATTTTTATATTGATAATATTAAGTATTTCTATGTTGGGTAACCCGGGGCACAATTACTCACTAAAAATGATTTTTTATCGTTTAATTAATGATAGGATGATAATAGTTTAATTATTA</gDNA_template>
            <first_frame> I  H  T  H  S  L  F  L  Y  F  W  S  I  F  S  F  S  Y  H  G  *  K  I  C  I  S  S  I  N  F  V  H  C  S  G  K  C  H  G  S  D  T  C  R  S  T  R  W  C  *  G  W  Y  Y  S  T  S  C  C  T  N  *  A  E  N  S  C  S  R  N  S  T  S  L  G  P  T  Y  S  C  S  C  C  S  S  N  R  S  S  Y  C  S  H  Y  T  C  C  C  C  T  R  I  S  T  S  K  F  S  T  T  *  S  T  S  K  F  S  T  S  T  I  S  T  S  S  S  S  R  G  S  Y  T  A  S  C  F  Y  S  T  G  C  S  S  S  C  C  T  C  C  F  G  D  N  S  S  S  G  S  *  Q  R  K  S  K  G  K  E  G  K  E  T  Q  C  I  T  S  T  F  S  R  Y  D  E  P  T  C  T  S  F  R  S  S  W  T  *  H  G  L  R  F  S  S  Q  P  I  S  *  R  *   : G  G  S  I  S  C  S  *  *  L  V  K  M  *  L  *  F  L  Y  *  *  Y  *  V  F  L  C  W  V  T  R  G  T  I  T  H  *  K  *  F  F  I  V  *  L  M  I  G  *  *  *  F  N  Y   </first_frame>
            <second_frame>  Y  T  H  T  L  F  F  S  I  F  G  L  Y  F  L  L  A  T  M  D  R  K  F  V  F  L  V  S  I  L  C  I  V  V  A  S  V  T  G  Q  T  P  A  A  A  P  V  G  A  K  A  G  T  T  P  P  A  A  A  P  T  K  P  K  T  P  A  P  A  T  A  P  A  S  A  P  P  T  A  V  P  V  A  P  V  T  A  P  V  T  A  P  T  T  P  V  V  A  A  P  V  S  A  P  A  S  S  P  P  L  K  A  P  A  S  S  P  P  V  Q  S  P  P  A  P  A  P  E  V  A  T  P  P  A  V  S  T  P  P  A  A  A  P  V  A  A  P  V  A  S  E  T  T  P  A  P  A  P  S  K  G  K  V  K  G  K  K  G  K  K  H  N  A  S  P  A  P  S  P  D  M  M  S  P  P  A  P  P  S  E  A  P  G  P  S  M  D  S  D  S  A  P  S  P  S  L  N  D  E  :  A  G  L  S  V  V  H  D  D  L  *  R  C  D  F  N  F  Y  I  D  N  I  K  Y  F  Y  V  G  *  P  G  A  Q  L  L  T  K  N  D  F  L  S  F  N  *  *  *  D  D  N  S  L  I  I  </second_frame>
            <third_frame>   T  H  T  L  S  F  S  L  F  L  V  Y  I  F  F  *  L  P  W  I  E  N  L  Y  F  *  Y  Q  F  C  A  L  *  W  Q  V  S  R  V  R  H  L  P  Q  H  P  L  V  L  R  L  V  L  L  H  Q  L  L  H  Q  L  S  R  K  L  L  L  P  Q  Q  H  Q  P  R  P  H  L  Q  L  F  L  L  L  Q  *  P  L  Q  L  L  L  P  L  H  L  L  L  L  H  P  Y  Q  H  Q  Q  V  L  H  H  L  K  H  Q  Q  V  L  H  Q  Y  N  L  H  Q  L  Q  L  Q  R  *  L  H  R  Q  L  F  L  L  H  R  L  Q  L  Q  L  L  H  L  L  L  R  R  Q  L  Q  L  R  L  L  A  K  E  K  *  R  E  R  R  E  R  N  T  M  H  H  Q  H  L  L  P  I  *  *  A  H  L  H  L  L  P  K  L  L  D  L  A  W  T  P  I  Q  L  P  A  H  L  L  T  M  R :   R  V  Y  Q  L  F  M  M  T  C  E  D  V  T  L  I  F  I  L  I  I  L  S  I  S  M  L  G  N  P  G  H  N  Y  S  L  K  M  I  F  Y  R  L  I  N  D  R  M  I  I  V  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19643" stop="19017"/>
                    <exon start="18617" stop="18585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTHTLFFSIFGLYFLLATMDRKFVFLVSILCIVVASVTGQTPAAAPVGAKAGTTPPAAAPTKPKTPAPATAPASAPPTAVPVAPVTAPVTAPTTPVVAAPVSAPASSPPLKAPASSPPVQSPPAPAPEVATPPAVSTPPAAAPVAAPVASETTPAPAPSKGKVKGKKGKKHNASPAPSPDMMSPPAPPSEAPGPSMDSDSAPSPSLNDEAGLSVVHDDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17980" e_stop="17508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17980" e_stop="17508" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17980" stop="17508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCAGAGTATTAAGTTGGACAAAGAAACATTAAAGGTCACTAAGCACGAGGCAACACAGTAAAGTAGGATCAATCAATTGCACATGCACGGATTGTACTGTGTATTTGCATTATTTTTACATATTGTGGATCTGAATTAATATTTTATAAATTAATGACAAAGATATTAATATATTGTGGGATCTAATGCAGAGTGGAGCAGAGAAATTGAAGATGCTGGGAAGTTTGGTAGCTGGATGGGCTGTGATGAGCTGGCTCTTGTTCTAAAGAGTTCAAAACATATTTTGATATTTGACATGTATAATTTATCTTTTGGTTATTTATGGTGAAGGGGTCCTCATTTGGATCTGCTTAGAGATTTGGCCACATTGCCTCCTTTTTTTTATATTCTTTCGTGGAGTGTAAGGGTAGAGATTTGTACTAGTCTTCACTACTTTACTCCTTTTTGGACTCGCACTTTCCTCTATTAT</gDNA_template>
            <first_frame> K  T  R  V  L  S  W  T  K  K  H  *  R  S  L  S  T  R  Q  H  S  K  V  G  S  I  N  C  T  C  T  D  C  T  V  Y  L  H  Y  F  Y  I  L  W  I  *  I  N  I  L  *  I  N  D  K  D  I  N  I  L  W  D  L  M  Q  S  G  A  E  K  L  K  M  L  G  S  L  V  A  G  W  A  V  M  S  W  L  L  F  *  R  V  Q  N  I  F  *  Y  L  T  C  I  I  Y  L  L  V  I  Y  G  E  G  V  L  I  W  I  C  L  E  I  W  P  H  C  L  L  F  F  I  F  F  R  G  V  *  G  *  R  F  V  L  V  F  T  T  L  L  L  F  G  L  A  L  S  S  I   </first_frame>
            <second_frame>  K  P  E  Y  *  V  G  Q  R  N  I  K  G  H  *  A  R  G  N  T  V  K  *  D  Q  S  I  A  H  A  R  I  V  L  C  I  C  I  I  F  T  Y  C  G  S  E  L  I  F  Y  K  L  M  T  K  I  L  I  Y  C  G  I  *  C  R  V  E  Q  R  N  *  R  C  W  E  V  W  *  L  D  G  L  *  *  A  G  S  C  S  K  E  F  K  T  Y  F  D  I  *  H  V  *  F  I  F  W  L  F  M  V  K  G  S  S  F  G  S  A  *  R  F  G  H  I  A  S  F  F  L  Y  S  F  V  E  C  K  G  R  D  L  Y  *  S  S  L  L  Y  S  F  L  D  S  H  F  P  L  L  </second_frame>
            <third_frame>   N  Q  S  I  K  L  D  K  E  T  L  K  V  T  K  H  E  A  T  Q  *  S  R  I  N  Q  L  H  M  H  G  L  Y  C  V  F  A  L  F  L  H  I  V  D  L  N  *  Y  F  I  N  *  *  Q  R  Y  *  Y  I  V  G  S  N  A  E  W  S  R  E  I  E  D  A  G  K  F  G  S  W  M  G  C  D  E  L  A  L  V  L  K  S  S  K  H  I  L  I  F  D  M  Y  N  L  S  F  G  Y  L  W  *  R  G  P  H  L  D  L  L  R  D  L  A  T  L  P  P  F  F  Y  I  L  S  W  S  V  R  V  E  I  C  T  S  L  H  Y  F  T  P  F  W  T  R  T  F  L  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27485" PGL_stop="28088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27485" e_stop="28088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27485" e_stop="28088" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27485" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTTAATAGCTCAATGCTTCAAAGATTTGCATCTGATTGAAGATATGGAACTTGTTCTCACCTTAAGATGCCTCTGGAATACTGCTCTTGCTCAACCTGATGACCCTGAATTCCCATCCCTCGGCGTCTTTAGTTGCATGGCTAGACTTCTCAACAGGTGCACCCGTGACCAAAAATGGCTTTCAAGAGGCCATAACGTGTATGTTCCTTATTATGCAGCTCATATCATTGGCTCCTACACCATGAACAAAGTTAGATTCTCTGTTTTGGCTGTTAAATCAGACGTAATTTCGCCATTAATAGACCTCTTAAGAGGTAAGATAACTTGGGTCGAACAAAGAGTGGCTGTTAGAGCACTTGGTCACATTGCACGACATAGAAGAACATTTGAAGATATTAAGGTCCATGAAGTAGAGATTATAAAACTAGCCATTGATATAGCTTCCAAATGCATTTATACAATCTATAGCGAGTTTGTGAGCAAGAGAAGTGAAAACAGAGTCGAATATCATCGTTATTTGATGATAAAAGGCCTCGGAGAATTCGAAATGGAGAGTAAAAAAGCAGAGTCTTGGGCTTGCCAAATGCAATGCTGGTCACT</gDNA_template>
            <first_frame> K  L  *  *  L  N  A  S  K  I  C  I  *  L  K  I  W  N  L  F  S  P  *  D  A  S  G  I  L  L  L  L  N  L  M  T  L  N  S  H  P  S  A  S  L  V  A  W  L  D  F  S  T  G  A  P  V  T  K  N  G  F  Q  E  A  I  T  C  M  F  L  I  M  Q  L  I  S  L  A  P  T  P  *  T  K  L  D  S  L  F  W  L  L  N  Q  T  *  F  R  H  *  *  T  S  *  E  V  R  *  L  G  S  N  K  E  W  L  L  E  H  L  V  T  L  H  D  I  E  E  H  L  K  I  L  R  S  M  K  *  R  L  *  N  *  P  L  I  *  L  P  N  A  F  I  Q  S  I  A  S  L  *  A  R  E  V  K  T  E  S  N  I  I  V  I  *  *  *  K  A  S  E  N  S  K  W  R  V  K  K  Q  S  L  G  L  A  K  C  N  A  G  H  </first_frame>
            <second_frame>  N  F  N  S  S  M  L  Q  R  F  A  S  D  *  R  Y  G  T  C  S  H  L  K  M  P  L  E  Y  C  S  C  S  T  *  *  P  *  I  P  I  P  R  R  L  *  L  H  G  *  T  S  Q  Q  V  H  P  *  P  K  M  A  F  K  R  P  *  R  V  C  S  L  L  C  S  S  Y  H  W  L  L  H  H  E  Q  S  *  I  L  C  F  G  C  *  I  R  R  N  F  A  I  N  R  P  L  K  R  *  D  N  L  G  R  T  K  S  G  C  *  S  T  W  S  H  C  T  T  *  K  N  I  *  R  Y  *  G  P  *  S  R  D  Y  K  T  S  H  *  Y  S  F  Q  M  H  L  Y  N  L  *  R  V  C  E  Q  E  K  *  K  Q  S  R  I  S  S  L  F  D  D  K  R  P  R  R  I  R  N  G  E  *  K  S  R  V  L  G  L  P  N  A  M  L  V  T </second_frame>
            <third_frame>   T  L  I  A  Q  C  F  K  D  L  H  L  I  E  D  M  E  L  V  L  T  L  R  C  L  W  N  T  A  L  A  Q  P  D  D  P  E  F  P  S  L  G  V  F  S  C  M  A  R  L  L  N  R  C  T  R  D  Q  K  W  L  S  R  G  H  N  V  Y  V  P  Y  Y  A  A  H  I  I  G  S  Y  T  M  N  K  V  R  F  S  V  L  A  V  K  S  D  V  I  S  P  L  I  D  L  L  R  G  K  I  T  W  V  E  Q  R  V  A  V  R  A  L  G  H  I  A  R  H  R  R  T  F  E  D  I  K  V  H  E  V  E  I  I  K  L  A  I  D  I  A  S  K  C  I  Y  T  I  Y  S  E  F  V  S  K  R  S  E  N  R  V  E  Y  H  R  Y  L  M  I  K  G  L  G  E  F  E  M  E  S  K  K  A  E  S  W  A  C  Q  M  Q  C  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27487" stop="28086"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIAQCFKDLHLIEDMELVLTLRCLWNTALAQPDDPEFPSLGVFSCMARLLNRCTRDQKWLSRGHNVYVPYYAAHIIGSYTMNKVRFSVLAVKSDVISPLIDLLRGKITWVEQRVAVRALGHIARHRRTFEDIKVHEVEIIKLAIDIASKCIYTIYSEFVSKRSENRVEYHRYLMIKGLGEFEMESKKAESWACQMQCWS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35077" PGL_stop="30225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35077" e_stop="34803"/>
            <exon e_start="33847" e_stop="33761"/>
            <exon e_start="33493" e_stop="33394"/>
            <exon e_start="33078" e_stop="32987"/>
            <exon e_start="32872" e_stop="32834"/>
            <exon e_start="32703" e_stop="32613"/>
            <exon e_start="31594" e_stop="31497"/>
            <exon e_start="31417" e_stop="31113"/>
            <exon e_start="30482" e_stop="30225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.284" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35077" e_stop="34803" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.885">
            <gDNA_intron_boundary i_start="34802" i_stop="33848" i_length="955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33847" e_stop="33761" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="33760" i_stop="33494" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33493" e_stop="33394" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.985">
            <gDNA_intron_boundary i_start="33393" i_stop="33079" i_length="315"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33078" e_stop="32987" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.909">
            <gDNA_intron_boundary i_start="32986" i_stop="32873" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32872" e_stop="32834" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.746" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32833" i_stop="32704" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32703" e_stop="32613" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="32612" i_stop="31595" i_length="1018"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31594" e_stop="31497" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.815" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31496" i_stop="31418" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="31417" e_stop="31113" e_length="305"/>
          </exon>
          <intron i_serial="8" don_prob="0.872" acc_prob="0.284">
            <gDNA_intron_boundary i_start="31112" i_stop="30483" i_length="630"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30482" e_stop="30225" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35077" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="33019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34962" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="32987"/>
              <exon start="32872" stop="32834"/>
              <exon start="32703" stop="32645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34909" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="32987"/>
              <exon start="32872" stop="32834"/>
              <exon start="32703" stop="32613"/>
              <exon start="31594" stop="31497"/>
              <exon start="31417" stop="31322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34909" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="32987"/>
              <exon start="32872" stop="32834"/>
              <exon start="32703" stop="32613"/>
              <exon start="31594" stop="31497"/>
              <exon start="31417" stop="31364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34909" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="32987"/>
              <exon start="32872" stop="32834"/>
              <exon start="32703" stop="32613"/>
              <exon start="31594" stop="31497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34909" stop="34803"/>
              <exon start="33847" stop="33761"/>
              <exon start="33493" stop="33394"/>
              <exon start="33078" stop="32987"/>
              <exon start="32872" stop="32834"/>
              <exon start="32703" stop="32655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31589" stop="31497"/>
              <exon start="31417" stop="31113"/>
              <exon start="30482" stop="30225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31259" stop="31113"/>
              <exon start="30482" stop="30237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31232" stop="31113"/>
              <exon start="30482" stop="30237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTACAAGCTGAATGGAGAAACTCAACTAAAGGCACAGGGAAGTCTGGGAAGAGACTCAGGAGAAGGGAAAAACTAAATTCTATTAGTTTAAACAGAGGTGGAGCTGGTTGTAGCACTAGCAGTTCCTCCGACACATCTACTTCATACAGTTTGATTGATGATAGGTCAACTGGACGTTCCATGATGTCATGGAACCACTTGTATTCATTGGCTGTCAAATGGAGACAAATATCTGAACCATGTGATCCAGTGGTGTGGATTAACAAGCTAAG : TGAGGAATTTAATACTGGTTTTGGGTCTCACACCCCTCTTGTTCTCGGTCAAGCCAAAGTTGTTCGCTACCATCCCAATTTTCAGAG : AACCTTGACTGTTGCCAAGGCTGTTATCAAGGAGAATAAATCAGTGTGCAACAAGGAAGACAAGATAATTGATCTTTCTGAACAACAGAAGTTGCAAGAA : ATAATGGCTGCAGAATCCAGCTCAGATCTTTACAGAGTTGTTGGTCAAGACTTTTGGTTGGCCACCTGGTGTAACAGTACGGCACTTGAAGG : GAAGCGTCTTGAAGGAACAAGGATCACTGTTGTGAAAAT : GGGTGAGATTGGTTACGACTTTGCAATTAGAACACCTTGCACACCTGCTAGATGGGATGACTTTGATGTGGAGATGACATCAGCCTGGGAG : GCTCTTTGTGCTGCGTACTGTGGTGATAATTATGGGTCAACAGATTTTGATGTGCTTGAAAATGTGAGAGATGCAATCTTAAGGATGACATATTACTG : GTATAATTTCATGCCGCTTTCCAGAGGAACTGCTGTTGTTGGGTTCATAGTTTTGCTTGGATTACTGCTCGCTGCTAATATGGAGTTCACAGGAAGCATTCCAAAAGGTCTGCAGGTGGATTGGGAAGCCATCCTGGAGTTTGACTCGAGTTCCTTTGTAGATTCTGTAAAGAAATGGTTGTACCCATCTCTCAAAGTCAGCACATCGTGGAAAAGCTACCCAGATGTCACGTCAACATTTGAGACGACTGGATCAGTTGTTGCTGCTCTGAGCACCTATTCAGACTAAGGGAGATACATCATTG : GTTTCATCCGGGATCAATTATCTGAAGGAAATTCGCTGGTGCATTATCTGACTTGATCCTGCTGCGGATGAATTGAGGCGAGATGTTTTGCATTATTGACATTCTCCAAGTGTACCATTACTTGTGAATTGTTGTATTTTAGTTGTATTGTGTATGATCTGCTCTCTCATTGTTTCCTTTCTTTTAGATTACCAAATTAGATTTCAGGATAGTTATTTAAAAAGAAATGAATAAATGGGTTTTCTAGTCTTTGTTTTC</gDNA_template>
            <first_frame> A  L  Q  A  E  W  R  N  S  T  K  G  T  G  K  S  G  K  R  L  R  R  R  E  K  L  N  S  I  S  L  N  R  G  G  A  G  C  S  T  S  S  S  S  D  T  S  T  S  Y  S  L  I  D  D  R  S  T  G  R  S  M  M  S  W  N  H  L  Y  S  L  A  V  K  W  R  Q  I  S  E  P  C  D  P  V  V  W  I  N  K  L  S :   E  E  F  N  T  G  F  G  S  H  T  P  L  V  L  G  Q  A  K  V  V  R  Y  H  P  N  F  Q  R :   T  L  T  V  A  K  A  V  I  K  E  N  K  S  V  C  N  K  E  D  K  I  I  D  L  S  E  Q  Q  K  L  Q  E  :  I  M  A  A  E  S  S  S  D  L  Y  R  V  V  G  Q  D  F  W  L  A  T  W  C  N  S  T  A  L  E  G :   K  R  L  E  G  T  R  I  T  V  V  K  M :   G  E  I  G  Y  D  F  A  I  R  T  P  C  T  P  A  R  W  D  D  F  D  V  E  M  T  S  A  W  E  :  A  L  C  A  A  Y  C  G  D  N  Y  G  S  T  D  F  D  V  L  E  N  V  R  D  A  I  L  R  M  T  Y  Y  W :   Y  N  F  M  P  L  S  R  G  T  A  V  V  G  F  I  V  L  L  G  L  L  L  A  A  N  M  E  F  T  G  S  I  P  K  G  L  Q  V  D  W  E  A  I  L  E  F  D  S  S  S  F  V  D  S  V  K  K  W  L  Y  P  S  L  K  V  S  T  S  W  K  S  Y  P  D  V  T  S  T  F  E  T  T  G  S  V  V  A  A  L  S  T  Y  S  D  *  G  R  Y  I  I   : G  F  I  R  D  Q  L  S  E  G  N  S  L  V  H  Y  L  T  *  S  C  C  G  *  I  E  A  R  C  F  A  L  L  T  F  S  K  C  T  I  T  C  E  L  L  Y  F  S  C  I  V  Y  D  L  L  S  H  C  F  L  S  F  R  L  P  N  *  I  S  G  *  L  F  K  K  K  *  I  N  G  F  S  S  L  C  F  </first_frame>
            <second_frame>  P  Y  K  L  N  G  E  T  Q  L  K  A  Q  G  S  L  G  R  D  S  G  E  G  K  N  *  I  L  L  V  *  T  E  V  E  L  V  V  A  L  A  V  P  P  T  H  L  L  H  T  V  *  L  M  I  G  Q  L  D  V  P  *  C  H  G  T  T  C  I  H  W  L  S  N  G  D  K  Y  L  N  H  V  I  Q  W  C  G  L  T  S  *   : V  R  N  L  I  L  V  L  G  L  T  P  L  L  F  S  V  K  P  K  L  F  A  T  I  P  I  F  R   : E  P  *  L  L  P  R  L  L  S  R  R  I  N  Q  C  A  T  R  K  T  R  *  L  I  F  L  N  N  R  S  C  K  K :   *  W  L  Q  N  P  A  Q  I  F  T  E  L  L  V  K  T  F  G  W  P  P  G  V  T  V  R  H  L  K   : G  S  V  L  K  E  Q  G  S  L  L  *  K   : W  V  R  L  V  T  T  L  Q  L  E  H  L  A  H  L  L  D  G  M  T  L  M  W  R  *  H  Q  P  G  R :   L  F  V  L  R  T  V  V  I  I  M  G  Q  Q  I  L  M  C  L  K  M  *  E  M  Q  S  *  G  *  H  I  T   : G  I  I  S  C  R  F  P  E  E  L  L  L  L  G  S  *  F  C  L  D  Y  C  S  L  L  I  W  S  S  Q  E  A  F  Q  K  V  C  R  W  I  G  K  P  S  W  S  L  T  R  V  P  L  *  I  L  *  R  N  G  C  T  H  L  S  K  S  A  H  R  G  K  A  T  Q  M  S  R  Q  H  L  R  R  L  D  Q  L  L  L  L  *  A  P  I  Q  T  K  G  D  T  S  L  :  V  S  S  G  I  N  Y  L  K  E  I  R  W  C  I  I  *  L  D  P  A  A  D  E  L  R  R  D  V  L  H  Y  *  H  S  P  S  V  P  L  L  V  N  C  C  I  L  V  V  L  C  M  I  C  S  L  I  V  S  F  L  L  D  Y  Q  I  R  F  Q  D  S  Y  L  K  R  N  E  *  M  G  F  L  V  F  V  F </second_frame>
            <third_frame>   L  T  S  *  M  E  K  L  N  *  R  H  R  E  V  W  E  E  T  Q  E  K  G  K  T  K  F  Y  *  F  K  Q  R  W  S  W  L  *  H  *  Q  F  L  R  H  I  Y  F  I  Q  F  D  *  *  *  V  N  W  T  F  H  D  V  M  E  P  L  V  F  I  G  C  Q  M  E  T  N  I  *  T  M  *  S  S  G  V  D  *  Q  A  K  :  *  G  I  *  Y  W  F  W  V  S  H  P  S  C  S  R  S  S  Q  S  C  S  L  P  S  Q  F  S  E  :  N  L  D  C  C  Q  G  C  Y  Q  G  E  *  I  S  V  Q  Q  G  R  Q  D  N  *  S  F  *  T  T  E  V  A  R   : N  N  G  C  R  I  Q  L  R  S  L  Q  S  C  W  S  R  L  L  V  G  H  L  V  *  Q  Y  G  T  *  R  :  E  A  S  *  R  N  K  D  H  C  C  E  N  :  G  *  D  W  L  R  L  C  N  *  N  T  L  H  T  C  *  M  G  *  L  *  C  G  D  D  I  S  L  G   : G  S  L  C  C  V  L  W  *  *  L  W  V  N  R  F  *  C  A  *  K  C  E  R  C  N  L  K  D  D  I  L  L  :  V  *  F  H  A  A  F  Q  R  N  C  C  C  W  V  H  S  F  A  W  I  T  A  R  C  *  Y  G  V  H  R  K  H  S  K  R  S  A  G  G  L  G  S  H  P  G  V  *  L  E  F  L  C  R  F  C  K  E  M  V  V  P  I  S  Q  S  Q  H  I  V  E  K  L  P  R  C  H  V  N  I  *  D  D  W  I  S  C  C  C  S  E  H  L  F  R  L  R  E  I  H  H  W :   F  H  P  G  S  I  I  *  R  K  F  A  G  A  L  S  D  L  I  L  L  R  M  N  *  G  E  M  F  C  I  I  D  I  L  Q  V  Y  H  Y  L  *  I  V  V  F  *  L  Y  C  V  *  S  A  L  S  L  F  P  F  F  *  I  T  K  L  D  F  R  I  V  I  *  K  E  M  N  K  W  V  F  *  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35077" stop="34803"/>
                    <exon start="33847" stop="33761"/>
                    <exon start="33493" stop="33394"/>
                    <exon start="33078" stop="32987"/>
                    <exon start="32872" stop="32834"/>
                    <exon start="32703" stop="32613"/>
                    <exon start="31594" stop="31497"/>
                    <exon start="31417" stop="31129"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQAEWRNSTKGTGKSGKRLRRREKLNSISLNRGGAGCSTSSSSDTSTSYSLIDDRSTGRSMMSWNHLYSLAVKWRQISEPCDPVVWINKLSEEFNTGFGSHTPLVLGQAKVVRYHPNFQRTLTVAKAVIKENKSVCNKEDKIIDLSEQQKLQEIMAAESSSDLYRVVGQDFWLATWCNSTALEGKRLEGTRITVVKMGEIGYDFAIRTPCTPARWDDFDVEMTSAWEALCAAYCGDNYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAVVGFIVLLGLLLAANMEFTGSIPKGLQVDWEAILEFDSSSFVDSVKKWLYPSLKVSTSWKSYPDVTSTFETTGSVVAALSTYSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40625" PGL_stop="36451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40625" e_stop="40561"/>
            <exon e_start="40241" e_stop="40141"/>
            <exon e_start="40007" e_stop="39900"/>
            <exon e_start="39280" e_stop="39210"/>
            <exon e_start="39065" e_stop="39009"/>
            <exon e_start="38879" e_stop="38771"/>
            <exon e_start="38665" e_stop="38585"/>
            <exon e_start="37798" e_stop="37712"/>
            <exon e_start="36567" e_stop="36451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.792" e_score="0.985"/>
          <exon-intron don_prob="0.137" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.501" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="40625" e_stop="40561" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.792">
            <gDNA_intron_boundary i_start="40560" i_stop="40242" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40241" e_stop="40141" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.137" acc_prob="0.936">
            <gDNA_intron_boundary i_start="40140" i_stop="40008" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40007" e_stop="39900" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.836" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39899" i_stop="39281" i_length="619"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39280" e_stop="39210" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.958">
            <gDNA_intron_boundary i_start="39209" i_stop="39066" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39065" e_stop="39009" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39008" i_stop="38880" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38879" e_stop="38771" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.501" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38770" i_stop="38666" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38665" e_stop="38585" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.890" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38584" i_stop="37799" i_length="786"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37798" e_stop="37712" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37711" i_stop="36568" i_length="1144"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36567" e_stop="36451" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40625" stop="40561"/>
              <exon start="40241" stop="40141"/>
              <exon start="40007" stop="39900"/>
              <exon start="39280" stop="39210"/>
              <exon start="39065" stop="39009"/>
              <exon start="38879" stop="38775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39900"/>
              <exon start="39280" stop="39210"/>
              <exon start="39065" stop="39009"/>
              <exon start="38879" stop="38771"/>
              <exon start="38665" stop="38585"/>
              <exon start="37798" stop="37712"/>
              <exon start="36567" stop="36451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTACAGACTTGACCAAAGCGTTGGAATTTGAGCCAGACTCTGCCGATATATTACATGAAAGAG : GAATTGTCAATTTTAAGTTTAAAGATTTCAAAGGTGCTGTTGAAGACCTCTCTACATGTGTAAAGTCCGATAAGGATAATAAATCTGCGTATACATATTTG : GGTTTGGCGTTATACTCTCTAGGAGAATATAGGAAGGCTGAGGAGGCACATAAGAAAGCAATCCAAATTGAAAGGAATTTCCTCGAGGCTTGGGCTCATCTAGCACAG : TTTTATCAAGACCTAGCAAACTCAGAGAAGGCCTTGGAATGCCTTCATCAGATTTTGCAAATAGATGGGAG : GTACGCGAAAGCATATCACCTGCGCGGGCTGCTACTTCATGGAATGGGAGAGCATAG : GAATGCTATAAAAGATTTATCAATGGGGTTGGCTATTGATAGCGCAAACATTGAATGCTTGTATCTACGAGCTTCTTGCTATCATGCTATTGGATTATATAAAGAAGCA : GTGAAGGACTATGATGCTGCTTTAGATCTTGAATTAGATTCTATGGAAAAGTTTGTGCTTCAATGCTTGGCGTTCTATCAG : AAAGAAATTGCATTATACACTGCATCAAAGATGAACAGCGAATTTTCTTGGTTTGATATTGATGGAGATATCGATCCCCTTTTCAAG : GAGTATTGGTGCAAAAGGCTGCACCCAAAAAATGTTTGCGAAAAGGTCTACAGGCAACCTCCTTTAAAAGAATCTTTGAAAAAGGGGAAGCAAAGAAAGCAAGAATTTACTTTCACC</gDNA_template>
            <first_frame> N  Y  R  L  D  Q  S  V  G  I  *  A  R  L  C  R  Y  I  T  *  K  R :   N  C  Q  F  *  V  *  R  F  Q  R  C  C  *  R  P  L  Y  M  C  K  V  R  *  G  *  *  I  C  V  Y  I  F   : G  F  G  V  I  L  S  R  R  I  *  E  G  *  G  G  T  *  E  S  N  P  N  *  K  E  F  P  R  G  L  G  S  S  S  T   : V  L  S  R  P  S  K  L  R  E  G  L  G  M  P  S  S  D  F  A  N  R  W  E  :  V  R  E  S  I  S  P  A  R  A  A  T  S  W  N  G  R  A  *  :  E  C  Y  K  R  F  I  N  G  V  G  Y  *  *  R  K  H  *  M  L  V  S  T  S  F  L  L  S  C  Y  W  I  I  *  R  S   : S  E  G  L  *  C  C  F  R  S  *  I  R  F  Y  G  K  V  C  A  S  M  L  G  V  L  S   : E  R  N  C  I  I  H  C  I  K  D  E  Q  R  I  F  L  V  *  Y  *  W  R  Y  R  S  P  F  Q   : G  V  L  V  Q  K  A  A  P  K  K  C  L  R  K  G  L  Q  A  T  S  F  K  R  I  F  E  K  G  E  A  K  K  A  R  I  Y  F  H  </first_frame>
            <second_frame>  I  T  D  L  T  K  A  L  E  F  E  P  D  S  A  D  I  L  H  E  R   : G  I  V  N  F  K  F  K  D  F  K  G  A  V  E  D  L  S  T  C  V  K  S  D  K  D  N  K  S  A  Y  T  Y  L  :  G  L  A  L  Y  S  L  G  E  Y  R  K  A  E  E  A  H  K  K  A  I  Q  I  E  R  N  F  L  E  A  W  A  H  L  A  Q  :  F  Y  Q  D  L  A  N  S  E  K  A  L  E  C  L  H  Q  I  L  Q  I  D  G  R :   Y  A  K  A  Y  H  L  R  G  L  L  L  H  G  M  G  E  H  R :   N  A  I  K  D  L  S  M  G  L  A  I  D  S  A  N  I  E  C  L  Y  L  R  A  S  C  Y  H  A  I  G  L  Y  K  E  A  :  V  K  D  Y  D  A  A  L  D  L  E  L  D  S  M  E  K  F  V  L  Q  C  L  A  F  Y  Q  :  K  E  I  A  L  Y  T  A  S  K  M  N  S  E  F  S  W  F  D  I  D  G  D  I  D  P  L  F  K  :  E  Y  W  C  K  R  L  H  P  K  N  V  C  E  K  V  Y  R  Q  P  P  L  K  E  S  L  K  K  G  K  Q  R  K  Q  E  F  T  F  T </second_frame>
            <third_frame>   L  Q  T  *  P  K  R  W  N  L  S  Q  T  L  P  I  Y  Y  M  K  E  :  E  L  S  I  L  S  L  K  I  S  K  V  L  L  K  T  S  L  H  V  *  S  P  I  R  I  I  N  L  R  I  H  I  W :   V  W  R  Y  T  L  *  E  N  I  G  R  L  R  R  H  I  R  K  Q  S  K  L  K  G  I  S  S  R  L  G  L  I  *  H  S :   F  I  K  T  *  Q  T  Q  R  R  P  W  N  A  F  I  R  F  C  K  *  M  G   : G  T  R  K  H  I  T  C  A  G  C  Y  F  M  E  W  E  S  I   : G  M  L  *  K  I  Y  Q  W  G  W  L  L  I  A  Q  T  L  N  A  C  I  Y  E  L  L  A  I  M  L  L  D  Y  I  K  K  Q :   *  R  T  M  M  L  L  *  I  L  N  *  I  L  W  K  S  L  C  F  N  A  W  R  S  I  R :   K  K  L  H  Y  T  L  H  Q  R  *  T  A  N  F  L  G  L  I  L  M  E  I  S  I  P  F  S  R :   S  I  G  A  K  G  C  T  Q  K  M  F  A  K  R  S  T  G  N  L  L  *  K  N  L  *  K  R  G  S  K  E  S  K  N  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40624" stop="40561"/>
                    <exon start="40241" stop="40141"/>
                    <exon start="40007" stop="39900"/>
                    <exon start="39280" stop="39210"/>
                    <exon start="39065" stop="39009"/>
                    <exon start="38879" stop="38771"/>
                    <exon start="38665" stop="38585"/>
                    <exon start="37798" stop="37712"/>
                    <exon start="36567" stop="36451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITDLTKALEFEPDSADILHERGIVNFKFKDFKGAVEDLSTCVKSDKDNKSAYTYLGLALYSLGEYRKAEEAHKKAIQIERNFLEAWAHLAQFYQDLANSEKALECLHQILQIDGRYAKAYHLRGLLLHGMGEHRNAIKDLSMGLAIDSANIECLYLRASCYHAIGLYKEAVKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKMNSEFSWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLKESLKKGKQRKQEFTFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47620" PGL_stop="45083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47620" e_stop="47352"/>
            <exon e_start="47235" e_stop="47126"/>
            <exon e_start="46209" e_stop="45521"/>
            <exon e_start="45285" e_stop="45083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47620" e_stop="47352" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="47351" i_stop="47236" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47235" e_stop="47126" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47125" i_stop="46210" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46209" e_stop="45521" e_length="689"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45520" i_stop="45286" i_length="235"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="45285" e_stop="45083" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47620" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47619" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="45843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47614" stop="47352"/>
              <exon start="47235" stop="47126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="45856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="45880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47126"/>
              <exon start="46209" stop="46142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47609" stop="47352"/>
              <exon start="47235" stop="47130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46065" stop="45521"/>
              <exon start="45285" stop="45083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46064" stop="45521"/>
              <exon start="45285" stop="45083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCACCAAAAAAAAGAAAAAAAAGAAAAACAGTTTTACAGCCGCAAGATCAGAAGTTCAGAAGCTCACAACACAACTGAAAGGAAAAAAAAATAAAAAATCAATCGCATCAATTGAGCTGCTTCCGATCCACTTGAGCCGCCGGCGATGGCGTCGAAAGTTACTGATAGGATTGAACTAGCTAAGCTTTGTAGCTCTAAGGAGTGGTCGAAAGCAATTCGAATTCTCGATTCTCTTCTTGCTCAAACTTGCGTCATTCAAGATATCTG : CAACCGAGCGTTTTGCTATAGTCAATTGGAGCTTCACAAGCATGTTATTAAGGATTGTGATAAGGCACTTCAGCTCGATCCTAAGCTTCTTCAAGCTTATATATTCAAAG : GACGTGCATTATCTGCTCTTGGTAAGAAAGAGGAAGCTCTTCTAGTTTGGGAGCAAGGGTATGAACATGCAGTTCATCAGTCCGCAGACTTAAAGCAACTGTTAGAGCTTGAAGAGCTGCTCAAAATTGCAAAGCAGAACACCGCAGTTGGCAGCAACAATCATTCGGTGCAGTCATCTGGCCCTGAGTCCAACACTGGACCTCCTCTTTCTACCAAATCTGGTGAAACTTGTGATATTAGTAAGGCCTCAGATAGGGAACTTAAAACATGCAGCAGTGGGATGTTGGAAAGCTCTGAGAAATCAAAGAATAGCTCTGTTTTACAAAATTCCTCAAGTAATAATTCCAAAAAGCATAAGAAGATTGAGTCTGAATCAAAGGAATTGCATGAGAGACAAGCAAATAAAACCAACAACAATTGCAAAAAATTGGGTTATCCATCTCTGGTTTGCAGTGAGTTAAGTGATATATCTGAAGACAGTAGGAAATCATCTGCAGTAACTAGTGAATCAAGTGAACAGTCAGAACCAAATGAGTTGCAGGAAATTCTCAGTCAGTTGAATAATAAATGTGATGTTCGCGTTGAATTGAGTGATGAAGGCAAGAGAAACAAAAAATTTTGTGTTACCAGGGTCAACAAAACCAAGTCCATTAACGTTGATTTCCGATTATCAAGGGGAATAGCACAG : GTACTGGGATACCATGCTCATGCATAGCAGGAAAGGCCTTCTACTGCAGTCTTCATGTCTTTTCTGTTCACTTTGCTTATTTCAGTTGTAATTTGGTGATTACACTCCACTTTTAATTTTGTGAACTTAACTGGAAGATTCTGCATATGTTCAAAGCTTGGGTCAACTAAGCTCTATTATTAGAATTCATTTTCTTCAGTTAC</gDNA_template>
            <first_frame> T  H  Q  K  K  E  K  K  E  K  Q  F  Y  S  R  K  I  R  S  S  E  A  H  N  T  T  E  R  K  K  K  *  K  I  N  R  I  N  *  A  A  S  D  P  L  E  P  P  A  M  A  S  K  V  T  D  R  I  E  L  A  K  L  C  S  S  K  E  W  S  K  A  I  R  I  L  D  S  L  L  A  Q  T  C  V  I  Q  D  I  C :   N  R  A  F  C  Y  S  Q  L  E  L  H  K  H  V  I  K  D  C  D  K  A  L  Q  L  D  P  K  L  L  Q  A  Y  I  F  K   : G  R  A  L  S  A  L  G  K  K  E  E  A  L  L  V  W  E  Q  G  Y  E  H  A  V  H  Q  S  A  D  L  K  Q  L  L  E  L  E  E  L  L  K  I  A  K  Q  N  T  A  V  G  S  N  N  H  S  V  Q  S  S  G  P  E  S  N  T  G  P  P  L  S  T  K  S  G  E  T  C  D  I  S  K  A  S  D  R  E  L  K  T  C  S  S  G  M  L  E  S  S  E  K  S  K  N  S  S  V  L  Q  N  S  S  S  N  N  S  K  K  H  K  K  I  E  S  E  S  K  E  L  H  E  R  Q  A  N  K  T  N  N  N  C  K  K  L  G  Y  P  S  L  V  C  S  E  L  S  D  I  S  E  D  S  R  K  S  S  A  V  T  S  E  S  S  E  Q  S  E  P  N  E  L  Q  E  I  L  S  Q  L  N  N  K  C  D  V  R  V  E  L  S  D  E  G  K  R  N  K  K  F  C  V  T  R  V  N  K  T  K  S  I  N  V  D  F  R  L  S  R  G  I  A  Q  :  V  L  G  Y  H  A  H  A  *  Q  E  R  P  S  T  A  V  F  M  S  F  L  F  T  L  L  I  S  V  V  I  W  *  L  H  S  T  F  N  F  V  N  L  T  G  R  F  C  I  C  S  K  L  G  S  T  K  L  Y  Y  *  N  S  F  S  S  V   </first_frame>
            <second_frame>  P  T  K  K  K  K  K  K  K  N  S  F  T  A  A  R  S  E  V  Q  K  L  T  T  Q  L  K  G  K  K  N  K  K  S  I  A  S  I  E  L  L  P  I  H  L  S  R  R  R  W  R  R  K  L  L  I  G  L  N  *  L  S  F  V  A  L  R  S  G  R  K  Q  F  E  F  S  I  L  F  L  L  K  L  A  S  F  K  I  S   : A  T  E  R  F  A  I  V  N  W  S  F  T  S  M  L  L  R  I  V  I  R  H  F  S  S  I  L  S  F  F  K  L  I  Y  S  K  :  D  V  H  Y  L  L  L  V  R  K  R  K  L  F  *  F  G  S  K  G  M  N  M  Q  F  I  S  P  Q  T  *  S  N  C  *  S  L  K  S  C  S  K  L  Q  S  R  T  P  Q  L  A  A  T  I  I  R  C  S  H  L  A  L  S  P  T  L  D  L  L  F  L  P  N  L  V  K  L  V  I  L  V  R  P  Q  I  G  N  L  K  H  A  A  V  G  C  W  K  A  L  R  N  Q  R  I  A  L  F  Y  K  I  P  Q  V  I  I  P  K  S  I  R  R  L  S  L  N  Q  R  N  C  M  R  D  K  Q  I  K  P  T  T  I  A  K  N  W  V  I  H  L  W  F  A  V  S  *  V  I  Y  L  K  T  V  G  N  H  L  Q  *  L  V  N  Q  V  N  S  Q  N  Q  M  S  C  R  K  F  S  V  S  *  I  I  N  V  M  F  A  L  N  *  V  M  K  A  R  E  T  K  N  F  V  L  P  G  S  T  K  P  S  P  L  T  L  I  S  D  Y  Q  G  E  *  H  R :   Y  W  D  T  M  L  M  H  S  R  K  G  L  L  L  Q  S  S  C  L  F  C  S  L  C  L  F  Q  L  *  F  G  D  Y  T  P  L  L  I  L  *  T  *  L  E  D  S  A  Y  V  Q  S  L  G  Q  L  S  S  I  I  R  I  H  F  L  Q  L  </second_frame>
            <third_frame>   P  P  K  K  R  K  K  R  K  T  V  L  Q  P  Q  D  Q  K  F  R  S  S  Q  H  N  *  K  E  K  K  I  K  N  Q  S  H  Q  L  S  C  F  R  S  T  *  A  A  G  D  G  V  E  S  Y  *  *  D  *  T  S  *  A  L  *  L  *  G  V  V  E  S  N  S  N  S  R  F  S  S  C  S  N  L  R  H  S  R  Y  L  :  Q  P  S  V  L  L  *  S  I  G  A  S  Q  A  C  Y  *  G  L  *  *  G  T  S  A  R  S  *  A  S  S  S  L  Y  I  Q  R :   T  C  I  I  C  S  W  *  E  R  G  S  S  S  S  L  G  A  R  V  *  T  C  S  S  S  V  R  R  L  K  A  T  V  R  A  *  R  A  A  Q  N  C  K  A  E  H  R  S  W  Q  Q  Q  S  F  G  A  V  I  W  P  *  V  Q  H  W  T  S  S  F  Y  Q  I  W  *  N  L  *  Y  *  *  G  L  R  *  G  T  *  N  M  Q  Q  W  D  V  G  K  L  *  E  I  K  E  *  L  C  F  T  K  F  L  K  *  *  F  Q  K  A  *  E  D  *  V  *  I  K  G  I  A  *  E  T  S  K  *  N  Q  Q  Q  L  Q  K  I  G  L  S  I  S  G  L  Q  *  V  K  *  Y  I  *  R  Q  *  E  I  I  C  S  N  *  *  I  K  *  T  V  R  T  K  *  V  A  G  N  S  Q  S  V  E  *  *  M  *  C  S  R  *  I  E  *  *  R  Q  E  K  Q  K  I  L  C  Y  Q  G  Q  Q  N  Q  V  H  *  R  *  F  P  I  I  K  G  N  S  T   : G  T  G  I  P  C  S  C  I  A  G  K  A  F  Y  C  S  L  H  V  F  S  V  H  F  A  Y  F  S  C  N  L  V  I  T  L  H  F  *  F  C  E  L  N  W  K  I  L  H  M  F  K  A  W  V  N  *  A  L  L  L  E  F  I  F  F  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47503" stop="47352"/>
                    <exon start="47235" stop="47126"/>
                    <exon start="46209" stop="45521"/>
                    <exon start="45285" stop="45259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AASDPLEPPAMASKVTDRIELAKLCSSKEWSKAIRILDSLLAQTCVIQDICNRAFCYSQLELHKHVIKDCDKALQLDPKLLQAYIFKGRALSALGKKEEALLVWEQGYEHAVHQSADLKQLLELEELLKIAKQNTAVGSNNHSVQSSGPESNTGPPLSTKSGETCDISKASDRELKTCSSGMLESSEKSKNSSVLQNSSSNNSKKHKKIESESKELHERQANKTNNNCKKLGYPSLVCSELSDISEDSRKSSAVTSESSEQSEPNELQEILSQLNNKCDVRVELSDEGKRNKKFCVTRVNKTKSINVDFRLSRGIAQVLGYHAHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56416" PGL_stop="56863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56416" e_stop="56863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="56416" e_stop="56863" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56416" stop="56737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56416" stop="56706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56416" stop="56566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56417" stop="56863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAATATATAAATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGACAAATTTTAGTTAATGTTTGCTATGGAGCACAATTGAATCAAACCCTAGCTATTTTATTTAATTTAGGTTATTAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  N  I  *  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  T  N  F  S  *  C  L  L  W  S  T  I  E  S  N  P  S  Y  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  I  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  A  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  Q  I  Y  K  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  *  Q  I  L  V  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  F  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  H  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  K  Y  I  N  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60406" PGL_stop="58971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60406" e_stop="59904"/>
            <exon e_start="59494" e_stop="59048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.934" e_score="0.996"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="60406" e_stop="59904" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.934">
            <gDNA_intron_boundary i_start="59903" i_stop="59495" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="59494" e_stop="59048" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60406" stop="59904"/>
              <exon start="59494" stop="59048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60268" stop="59904"/>
              <exon start="59494" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAACCTAAAATTAACAGCCACCGGCCAATCCATCTTCCTTCGTACCAAAAAGTCGGCTGGTCGTCTCCTCCAATTTCCACACCACACCTTAATAAAGTCTAAAAATTGGGAAACAAAAAACTCAGACCAAAAAATGGGAATCGGTGAAGAAGCTCACAACGTAAAAGTTGTAGGTTCAGGCGAAAAGACCATCGTACTGGGTCATGGCTTCGGCACCGATCAGTCTGTTTGGAAACAGCTTGTTCCTTACCTCGTTGATGAATATCGTGTTGTACTTTATGATAATATGGGTGCTGGACCGACAAATCCTGATTACTTCGATTTTGATCGATATTCTTCCCTTGAAGGTTATGCGTACGATTTAATTTCCATTTTGGAGGAACTTCAAATCAATCGTTGCATGTACTTAGGCCATTCCTTATCGGCTATGACTGGTGTTGTTGCTTCTATTTTTCGTCCCGATCTCTTTTCCAAACTCATTCTTGTATCAGCTTCCCCAAG : GTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGC</gDNA_template>
            <first_frame> V  N  L  K  L  T  A  T  G  Q  S  I  F  L  R  T  K  K  S  A  G  R  L  L  Q  F  P  H  H  T  L  I  K  S  K  N  W  E  T  K  N  S  D  Q  K  M  G  I  G  E  E  A  H  N  V  K  V  V  G  S  G  E  K  T  I  V  L  G  H  G  F  G  T  D  Q  S  V  W  K  Q  L  V  P  Y  L  V  D  E  Y  R  V  V  L  Y  D  N  M  G  A  G  P  T  N  P  D  Y  F  D  F  D  R  Y  S  S  L  E  G  Y  A  Y  D  L  I  S  I  L  E  E  L  Q  I  N  R  C  M  Y  L  G  H  S  L  S  A  M  T  G  V  V  A  S  I  F  R  P  D  L  F  S  K  L  I  L  V  S  A  S  P  R :   F  I  N  T  D  D  Y  Y  G  G  F  E  S  E  D  I  E  Q  L  C  Q  A  M  E  S  N  Y  K  A  W  V  S  G  F  A  P  L  A  V  G  G  D  M  N  S  V  A  V  Q  E  F  S  R  T  L  F  N  M  R  P  D  I  A  L  S  V  F  R  T  V  F  T  F  D  L  R  H  Y  L  S  R  V  T  V  P  C  H  I  I  Q  S  S  M  D  V  A  M  P  V  T  V  S  E  Y  L  H  R  N  L  G  G  K  S  I  V  E  I  I  S  T  E  G  H  L  P  H  L  S  A  P  E  A  T  I  P  V  L  L  R  H  I  S  H  D  I  T  A  D   </first_frame>
            <second_frame>  *  T  *  N  *  Q  P  P  A  N  P  S  S  F  V  P  K  S  R  L  V  V  S  S  N  F  H  T  T  P  *  *  S  L  K  I  G  K  Q  K  T  Q  T  K  K  W  E  S  V  K  K  L  T  T  *  K  L  *  V  Q  A  K  R  P  S  Y  W  V  M  A  S  A  P  I  S  L  F  G  N  S  L  F  L  T  S  L  M  N  I  V  L  Y  F  M  I  I  W  V  L  D  R  Q  I  L  I  T  S  I  L  I  D  I  L  P  L  K  V  M  R  T  I  *  F  P  F  W  R  N  F  K  S  I  V  A  C  T  *  A  I  P  Y  R  L  *  L  V  L  L  L  L  F  F  V  P  I  S  F  P  N  S  F  L  Y  Q  L  P  Q   : G  S  *  I  R  M  T  I  M  E  D  S  N  R  K  T  *  N  N  Y  V  K  Q  W  S  R  T  T  R  H  G  Y  L  V  L  R  H  *  R  W  E  V  T  *  I  P  W  Q  Y  K  N  S  A  G  H  Y  S  T  *  D  Q  T  *  H  S  V  F  S  A  L  F  S  R  S  T  *  G  I  I  C  P  V  L  L  S  L  A  I  S  Y  R  A  Q  W  M  L  Q  C  Q  *  L  F  L  N  I  Y  T  E  I  *  A  E  N  R  S  *  R  S  S  Q  Q  K  V  I  F  H  I  *  A  H  L  R  L  L  S  P  Y  C  F  D  T  F  H  M  I  L  L  L  M  </second_frame>
            <third_frame>   E  P  K  I  N  S  H  R  P  I  H  L  P  S  Y  Q  K  V  G  W  S  S  P  P  I  S  T  P  H  L  N  K  V  *  K  L  G  N  K  K  L  R  P  K  N  G  N  R  *  R  S  S  Q  R  K  S  C  R  F  R  R  K  D  H  R  T  G  S  W  L  R  H  R  S  V  C  L  E  T  A  C  S  L  P  R  *  *  I  S  C  C  T  L  *  *  Y  G  C  W  T  D  K  S  *  L  L  R  F  *  S  I  F  F  P  *  R  L  C  V  R  F  N  F  H  F  G  G  T  S  N  Q  S  L  H  V  L  R  P  F  L  I  G  Y  D  W  C  C  C  F  Y  F  S  S  R  S  L  F  Q  T  H  S  C  I  S  F  P  K  :  V  H  K  Y  G  *  L  L  W  R  I  R  I  G  R  H  R  T  T  M  S  S  N  G  V  E  L  Q  G  M  G  I  W  F  C  A  T  S  G  G  R  *  H  E  F  R  G  S  T  R  I  Q  Q  D  I  I  Q  H  E  T  R  H  S  T  Q  C  F  P  H  C  F  H  V  R  P  K  A  L  S  V  P  C  Y  C  P  L  P  Y  H  T  E  L  N  G  C  C  N  A  S  D  C  F  *  I  F  T  Q  K  F  R  R  K  I  D  R  R  D  H  L  N  R  R  S  S  S  T  F  E  R  T  *  G  Y  Y  P  R  I  A  S  T  H  F  T  *  Y  Y  C  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60406" stop="59904"/>
                    <exon start="59494" stop="59050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLKLTATGQSIFLRTKKSAGRLLQFPHHTLIKSKNWETKNSDQKMGIGEEAHNVKVVGSGEKTIVLGHGFGTDQSVWKQLVPYLVDEYRVVLYDNMGAGPTNPDYFDFDRYSSLEGYAYDLISILEELQINRCMYLGHSLSAMTGVVASIFRPDLFSKLILVSASPRFINTDDYYGGFESEDIEQLCQAMESNYKAWVSGFAPLAVGGDMNSVAVQEFSRTLFNMRPDIALSVFRTVFTFDLRHYLSRVTVPCHIIQSSMDVAMPVTVSEYLHRNLGGKSIVEIISTEGHLPHLSAPEATIPVLLRHISHDITAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59528" e_stop="58971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59528" e_stop="58971" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59528" stop="58971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTATAACGTCACATGATTTCTTTTCTTAGGTTCATAAATACGGATGACTATTATGGAGGATTCGAATCGGAAGACATAGAACAACTATGTCAAGCAATGGAGTCGAACTACAAGGCATGGGTATCTGGTTTTGCGCCACTAGCGGTGGGAGGTGACATGAATTCCGTGGCAGTACAAGAATTCAGCAGGACATTATTCAACATGAGACCAGACATAGCACTCAGTGTTTTCCGCACTGTTTTCACGTTCGACCTAAGGCATTATCTGTCCCGTGTTACTGTCCCTTGCCATATCATACAGAGCTCAATGGATGTTGCAATGCCAGTGACTGTTTCTGAATATTTACACAGAAATTTAGGCGGAAAATCGATCGTAGAGATCATCTCAACAGAAGGTCATCTTCCACATTTGAGCGCACCTGAGGCTACTATCCCCGTATTGCTTCGACACATTTCACATGATATTACTGCTGATGCTTCTTCTAGTTAAAGGATAATGAAAAAAACTTCTTCAAAAGTACTCATCATCAAAATAAATATACATGTGTATTTCT</gDNA_template>
            <first_frame> L  F  Y  N  V  T  *  F  L  F  L  G  S  *  I  R  M  T  I  M  E  D  S  N  R  K  T  *  N  N  Y  V  K  Q  W  S  R  T  T  R  H  G  Y  L  V  L  R  H  *  R  W  E  V  T  *  I  P  W  Q  Y  K  N  S  A  G  H  Y  S  T  *  D  Q  T  *  H  S  V  F  S  A  L  F  S  R  S  T  *  G  I  I  C  P  V  L  L  S  L  A  I  S  Y  R  A  Q  W  M  L  Q  C  Q  *  L  F  L  N  I  Y  T  E  I  *  A  E  N  R  S  *  R  S  S  Q  Q  K  V  I  F  H  I  *  A  H  L  R  L  L  S  P  Y  C  F  D  T  F  H  M  I  L  L  L  M  L  L  L  V  K  G  *  *  K  K  L  L  Q  K  Y  S  S  S  K  *  I  Y  M  C  I  S </first_frame>
            <second_frame>  S  S  I  T  S  H  D  F  F  S  *  V  H  K  Y  G  *  L  L  W  R  I  R  I  G  R  H  R  T  T  M  S  S  N  G  V  E  L  Q  G  M  G  I  W  F  C  A  T  S  G  G  R  *  H  E  F  R  G  S  T  R  I  Q  Q  D  I  I  Q  H  E  T  R  H  S  T  Q  C  F  P  H  C  F  H  V  R  P  K  A  L  S  V  P  C  Y  C  P  L  P  Y  H  T  E  L  N  G  C  C  N  A  S  D  C  F  *  I  F  T  Q  K  F  R  R  K  I  D  R  R  D  H  L  N  R  R  S  S  S  T  F  E  R  T  *  G  Y  Y  P  R  I  A  S  T  H  F  T  *  Y  Y  C  *  C  F  F  *  L  K  D  N  E  K  N  F  F  K  S  T  H  H  Q  N  K  Y  T  C  V  F   </second_frame>
            <third_frame>   L  L  *  R  H  M  I  S  F  L  R  F  I  N  T  D  D  Y  Y  G  G  F  E  S  E  D  I  E  Q  L  C  Q  A  M  E  S  N  Y  K  A  W  V  S  G  F  A  P  L  A  V  G  G  D  M  N  S  V  A  V  Q  E  F  S  R  T  L  F  N  M  R  P  D  I  A  L  S  V  F  R  T  V  F  T  F  D  L  R  H  Y  L  S  R  V  T  V  P  C  H  I  I  Q  S  S  M  D  V  A  M  P  V  T  V  S  E  Y  L  H  R  N  L  G  G  K  S  I  V  E  I  I  S  T  E  G  H  L  P  H  L  S  A  P  E  A  T  I  P  V  L  L  R  H  I  S  H  D  I  T  A  D  A  S  S  S  *  R  I  M  K  K  T  S  S  K  V  L  I  I  K  I  N  I  H  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59517" stop="59035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHMISFLRFINTDDYYGGFESEDIEQLCQAMESNYKAWVSGFAPLAVGGDMNSVAVQEFSRTLFNMRPDIALSVFRTVFTFDLRHYLSRVTVPCHIIQSSMDVAMPVTVSEYLHRNLGGKSIVEIISTEGHLPHLSAPEATIPVLLRHISHDITADASSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="59753" PGL_stop="60577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59753" e_stop="60577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="59753" e_stop="60577" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59753" stop="60577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</gDNA_template>
            <first_frame> R  L  R  G  K  C  Y  V  H  L  P  S  N  L  F  V  L  N  E  H  F  N  *  H  F  S  C  F  L  V  K  Y  R  N  I  *  K  F  H  *  T  N  K  L  T  Y  Q  F  I  S  P  W  G  S  *  Y  K  N  E  F  G  K  E  I  G  T  K  N  R  S  N  N  T  S  H  S  R  *  G  M  A  *  V  H  A  T  I  D  L  K  F  L  Q  N  G  N  *  I  V  R  I  T  F  K  G  R  I  S  I  K  I  E  V  I  R  I  C  R  S  S  T  H  I  I  I  K  Y  N  T  I  F  I  N  E  V  R  N  K  L  F  P  N  R  L  I  G  A  E  A  M  T  Q  Y  D  G  L  F  A  *  T  Y  N  F  Y  V  V  S  F  F  T  D  S  H  F  L  V  *  V  F  C  F  P  I  F  R  L  Y  *  G  V  V  W  K  L  E  E  T  T  S  R  L  F  G  T  K  E  D  G  L  A  G  G  C  *  F  *  V  H  K  S  *  H  *  Y  C  K  S  A  N  *  W  K  G  F  Y  G  Y  Q  V  I  E  I  L  *  *  S  Y  F  I  C  F  M  L  K  *  K  S  H  I  F  F  T  I  I  K  Y  *  *  L  L  P  K  N  T  R </first_frame>
            <second_frame>  V  *  E  G  N  A  T  Y  I  F  L  L  I  Y  L  C  *  T  S  I  L  I  N  T  F  L  V  F  *  L  N  T  E  I  F  K  S  F  I  R  Q  I  N  *  H  I  N  L  S  H  L  G  E  A  D  T  R  M  S  L  E  K  R  S  G  R  K  I  E  A  T  T  P  V  I  A  D  K  E  W  P  K  Y  M  Q  R  L  I  *  S  S  S  K  M  E  I  K  S  Y  A  *  P  S  R  E  E  Y  R  S  K  S  K  *  S  G  F  V  G  P  A  P  I  L  S  *  S  T  T  R  Y  S  S  T  R  *  G  T  S  C  F  Q  T  D  *  S  V  P  K  P  *  P  S  T  M  V  F  S  P  E  P  T  T  F  T  L  *  A  S  S  P  I  P  I  F  W  S  E  F  F  V  S  Q  F  L  D  F  I  K  V  W  C  G  N  W  R  R  R  P  A  D  F  L  V  R  R  K  M  D  W  P  V  A  V  N  F  R  F  T  N  H  N  I  S  I  A  R  V  L  I  N  G  R  V  F  M  V  I  K  L  L  K  Y  F  S  K  V  T  L  S  V  L  C  *  N  K  S  H  T  Y  F  L  L  *  *  N  I  N  N  F  Y  R  K  T  L   </second_frame>
            <third_frame>   F  K  R  E  M  L  R  T  S  S  F  *  F  I  C  V  K  R  A  F  *  L  T  L  F  L  F  F  S  *  I  Q  K  Y  L  K  V  S  L  D  K  *  I  D  I  S  I  Y  L  T  L  G  K  L  I  Q  E  *  V  W  K  R  D  R  D  E  K  *  K  Q  Q  H  Q  S  *  P  I  R  N  G  L  S  T  C  N  D  *  F  E  V  P  P  K  W  K  L  N  R  T  H  N  L  Q  G  K  N  I  D  Q  N  R  S  N  Q  D  L  S  V  Q  H  P  Y  Y  H  K  V  Q  H  D  I  H  Q  R  G  K  E  Q  A  V  S  K  Q  T  D  R  C  R  S  H  D  P  V  R  W  S  F  R  L  N  L  Q  L  L  R  C  E  L  L  H  R  F  P  F  F  G  L  S  F  L  F  P  N  F  *  T  L  L  R  C  G  V  E  I  G  G  D  D  Q  P  T  F  W  Y  E  G  R  W  I  G  R  W  L  L  I  L  G  S  Q  I  I  T  L  V  L  Q  E  C  *  L  M  E  G  F  L  W  L  S  S  Y  *  N  T  L  V  K  L  L  Y  L  F  Y  A  K  I  K  V  T  H  I  F  Y  Y  N  K  I  L  I  T  S  T  E  K  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60016" stop="60306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEVPPKWKLNRTHNLQGKNIDQNRSNQDLSVQHPYYHKVQHDIHQRGKEQAVSKQTDRCRSHDPVRWSFRLNLQLLRCELLHRFPFFGLSFLFPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60252" stop="60512"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSPIPIFWSEFFVSQFLDFIKVWCGNWRRRPADFLVRRKMDWPVAVNFRFTNHNISIARVLINGRVFMVIKLLKYFSKVTLSVLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64834" PGL_stop="61709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64834" e_stop="64523"/>
            <exon e_start="64155" e_stop="63773"/>
            <exon e_start="62469" e_stop="62233"/>
            <exon e_start="62024" e_stop="61709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.957" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="64834" e_stop="64523" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64522" i_stop="64156" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64155" e_stop="63773" e_length="383"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.977">
            <gDNA_intron_boundary i_start="63772" i_stop="62470" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62469" e_stop="62233" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.804" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62232" i_stop="62025" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="62024" e_stop="61709" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64834" stop="64523"/>
              <exon start="64155" stop="63871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64834" stop="64523"/>
              <exon start="64155" stop="64080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64706" stop="64523"/>
              <exon start="64155" stop="63789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64028" stop="63773"/>
              <exon start="62469" stop="62233"/>
              <exon start="62024" stop="61709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGAGCTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA : AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG : GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT : GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGT</gDNA_template>
            <first_frame> V  F  F  L  F  F  K  K  K  K  K  S  S  F  T  L  Q  P  A  V  *  D  V  K  L  L  F  W  E  L  L  W  W  G  R  W  *  *  S  F  M  A  Y  G  A  *  S  H  M  P  Q  V  N  I  L  L  L  *  F  R  P  I  L  C  L  K  I  K  V  K  F  L  Q  P  L  V  L  L  M  W  V  F  M  M  V  M  V  A  R  K  L  L  A  S  S  T  T  I  S  S  L  N  Y  K  :  S  W  L  W  K  K  E  D  C  L  R  T  *  S  G  K  H  L  M  L  L  R  R  D  S  C  V  W  *  N  S  L  G  W  I  N  L  R  L  H  L  Q  G  L  V  V  Y  L  E  Q  S  Q  K  M  N  C  M  W  Q  I  L  G  T  P  G  Q  C  L  A  G  E  Q  R  Q  A  R  R  V  I  Q  Q  *  *  W  Q  N  V  C  R  *  I  I  M  L  G  L  R  R  L  G  R  R  *  R  H  C  I  Q  M  I  L  M  L  W  S  T  F  E  G  F  G  E  L  R  V  *  F  R :   F  L  D  Q  L  V  M  S  I  *  R  N  L  S  L  I  E  I  L  C  S  Y  N  M  D  I  L  F  L  *  K  E  L  *  C  Q  Q  S  P  P  Y  *  S  E  R  *  D  Q  K  T  Y  F  *  Y  L  H  R  M  A  Y  G  I  N  *  P  M  T  K  L  R  I  L  F  *  R  I  L  E  L :   E  *  Q  N  D  *  *  E  L  P  L  R  V  L  Q  R  R  K  K  *  D  M  R  T  S  N  D  *  R  R  G  K  G  G  T  F  M  M  I  S  Q  L  L  *  Y  I  W  I  T  L  E  G  P  Q  I  L  E  L  T  L  L  R  A  R  M  S  L  L  T  Y  T  P  *  T  R  V  I  K  E  R  T  Y  L  M  F  P  H  E  K  C  L  I  H  V  Y  I  I  Y  T  I  L  *  I  R  R </first_frame>
            <second_frame>  S  S  F  F  S  S  K  K  K  K  N  P  L  S  L  Y  S  Q  Q  S  K  M  L  S  S  C  F  G  S  C  F  G  G  D  D  G  D  D  L  L  W  H  M  E  L  E  A  T  C  H  R  *  I  F  C  C  C  S  S  G  Q  F  F  A  *  R  S  R  S  S  F  Y  N  P  *  C  Y  L  C  G  C  L  *  W  S  W  W  P  A  S  F  S  L  H  Q  Q  Q  S  L  P  S  T  T  K :   A  G  F  G  R  R  R  I  V  *  G  R  D  Q  E  S  I  *  C  Y  *  G  G  I  L  A  F  G  E  T  V  L  A  G  S  T  S  D  C  I  C  R  V  L  L  S  I  W  S  N  L  K  R  *  I  V  C  G  K  S  W  G  L  Q  G  S  A  W  Q  E  S  R  D  R  P  D  G  *  F  S  S  S  S  G  R  T  F  V  D  R  S  *  C  W  G  *  G  G  *  E  G  G  R  G  T  A  S  R  *  F  S  C  C  G  L  R  S  R  G  L  E  N  *  G  Y  N  S   : G  F  *  I  N  W  *  C  L  S  E  E  T  *  V  *  *  R  S  Y  V  H  T  I  W  I  S  Y  S  F  K  K  S  C  N  V  S  R  A  L  H  I  D  P  K  D  K  T  R  R  L  I  F  D  I  C  I  G  W  P  M  G  S  T  N  R  *  R  S  *  G  Y  C  F  E  E  S  *  N   : W  N  S  K  T  I  S  E  S  C  P  *  G  C  C  R  E  E  R  N  E  I  *  G  H  Q  T  T  R  E  G  G  K  A  A  R  S  *  *  Y  H  S  Y  C  D  I  F  G  S  P  W  K  V  L  K  F  W  N  *  H  C  *  G  H  E  C  P  S  *  H  I  L  L  E  L  G  S  L  R  R  E  H  I  L  C  F  P  M  K  S  V  *  Y  M  Y  T  L  Y  I  P  F  C  K  Y  V   </second_frame>
            <third_frame>   L  L  S  F  L  Q  K  K  K  K  I  L  F  H  S  T  A  S  S  L  R  C  *  A  P  V  L  G  A  A  L  V  G  T  M  V  M  I  F  Y  G  I  W  S  L  K  P  H  A  T  G  E  Y  S  V  A  V  V  Q  A  N  S  L  L  E  D  Q  G  Q  V  F  T  T  P  S  A  T  Y  V  G  V  Y  D  G  H  G  G  P  Q  A  S  R  F  I  N  N  N  L  F  P  Q  L  Q   : K  L  A  L  E  E  G  G  L  S  E  D  V  I  R  K  A  F  D  A  I  E  E  G  F  L  R  L  V  K  Q  S  W  L  D  Q  P  Q  I  A  S  A  G  S  C  C  L  F  G  A  I  S  K  D  E  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  R  A  E  T  G  Q  T  G  D  S  A  V  V  V  A  E  R  L  S  I  D  H  N  V  G  V  E  E  V  R  K  E  V  E  A  L  H  P  D  D  S  H  V  V  V  Y  V  R  G  V  W  R  I  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  K  P  E  F  N  R  D  P  M  F  I  Q  Y  G  Y  P  I  P  L  K  R  A  V  M  S  A  E  P  S  I  L  I  R  K  I  R  P  E  D  L  F  L  I  F  A  S  D  G  L  W  D  Q  L  T  D  D  E  A  K  D  I  V  L  K  N  P  R  I  :  G  I  A  K  R  L  V  R  A  A  L  E  G  A  A  E  K  K  E  M  R  Y  E  D  I  K  R  L  E  K  G  E  R  R  H  V  H  D  D  I  T  V  I  V  I  Y  L  D  H  P  G  R  S  S  N  S  G  I  N  I  V  K  G  T  N  V  P  L  D  I  Y  S  L  N  S  G  H  *  G  E  N  I  S  Y  V  S  P  *  K  V  S  N  T  C  I  H  Y  I  Y  H  F  V  N  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64763" stop="64523"/>
                    <exon start="64155" stop="63773"/>
                    <exon start="62469" stop="62233"/>
                    <exon start="62024" stop="61791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APVLGAALVGTMVMIFYGIWSLKPHATGEYSVAVVQANSLLEDQGQVFTTPSATYVGVYDGHGGPQASRFINNNLFPQLQKLALEEGGLSEDVIRKAFDAIEEGFLRLVKQSWLDQPQIASAGSCCLFGAISKDELYVANLGDSRAVLGRRAETGQTGDSAVVVAERLSIDHNVGVEEVRKEVEALHPDDSHVVVYVRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPMFIQYGYPIPLKRAVMSAEPSILIRKIRPEDLFLIFASDGLWDQLTDDEAKDIVLKNPRIGIAKRLVRAALEGAAEKKEMRYEDIKRLEKGERRHVHDDITVIVIYLDHPGRSSNSGINIVKGTNVPLDIYSLNSGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="65641" PGL_stop="68299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65641" e_stop="66352"/>
            <exon e_start="67726" e_stop="68299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="65641" e_stop="66352" e_length="712"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66353" i_stop="67725" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="67726" e_stop="68299" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65641" stop="66312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65722" stop="66352"/>
              <exon start="67726" stop="67767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65722" stop="66189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65723" stop="66200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65827" stop="66300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65839" stop="66352"/>
              <exon start="67726" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65881" stop="66352"/>
              <exon start="67726" stop="67857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65891" stop="66352"/>
              <exon start="67726" stop="67771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66220" stop="66352"/>
              <exon start="67726" stop="67750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66289" stop="66352"/>
              <exon start="67726" stop="68299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG : ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</gDNA_template>
            <first_frame> H  F  L  *  K  T  R  E  *  L  L  C  I  C  N  T  K  M  K  S  C  N  I  N  G  Y  W  F  N  P  T  S  Y  L  *  G  S  V  I  F  A  G  G  E  A  T  C  C  P  S  S  R  F  G  H  Q  I  P  A  G  P  T  S  S  R  F  K  F  T  D  G  I  Q  I  T  Q  G  N  P  S  S  K  N  T  K  L  I  *  R  N  V  A  L  W  S  *  T  P  *  S  K  S  R  M  K  L  T  L  H  Q  P  S  E  D  L  A  E  K  G  S  V  G  P  V  P  *  T  S  T  A  V  M  D  S  L  V  *  Q  R  S  H  R  I  L  Y  R  R  L  R  H  C  H  I  C  L  *  L  R  I  W  *  W  I  *  L  I  F  I  I  S  I  S  L  L  S  L  G  *  R  E  K  H  L  R  Q  R  L  E  R  R  Y  L  R  A  R  A  I  R  L  S  W  M  G  C  T  S  V  F  S  V  L  V  V  V  H  H  A  L  A  T  G  G  I  L  S  L  I  L  V  L  L  H  Y  S  M  P  I   : D  G  S  W  I  A  V  M  N  I  L  W  S  A  W  T  Q  L  M  M  N  S  S  F  I  A  A  T  L  F  *  T  V  L  V  L  A  Q  R  D  L  I  L  A  S  S  E  H  Q  A  P  G  D  G  A  L  S  L  H  S  A  V  *  C  T  S  L  F  C  *  H  *  F  W  R  T  S  R  R  *  F  S  K  *  F  M  H  R  S  *  F  A  F  *  D  F  F  L  V  L  G  C  C  P  S  P  S  P  V  *  I  W  D  S  F  V  H  R  A  A  L  F  E  M  K  G  A  S  H  L  K  Y  C  T  N  N  *  Y  D  S  *  S  E  A  N  M  *  *  Q  R  V  Y  T  N  L  *  T  D  L  S  *  K  I  M  I  S  I  N  I  R  L  K  L  Y  L  I  K  T  S  S  I  I  *  N  I  S  Y  I  I  D  G   </first_frame>
            <second_frame>  I  F  S  E  K  Q  E  S  D  F  Y  V  Y  V  I  R  R  *  R  A  V  I  S  M  A  T  G  L  I  R  R  A  I  Y  R  V  Q  S  S  S  P  A  A  R  L  L  V  A  R  A  H  A  S  D  T  K  S  Q  Q  V  Q  P  Q  V  V  S  N  L  P  M  E  S  R  *  P  R  E  T  R  A  P  R  I  Q  N  *  S  E  G  M  W  P  Y  G  L  R  R  P  N  Q  N  Q  E  *  S  *  P  F  T  N  L  Q  K  I  L  Q  R  R  D  L  W  V  L  C  H  E  H  R  R  L  *  W  T  R  L  F  D  K  D  L  I  G  F  C  I  D  D  Y  A  T  A  T  Y  V  C  D  *  G  F  G  S  G  Y  D  *  F  L  *  S  V  *  V  Y  *  A  L  A  E  E  K  N  T  C  A  N  A  W  K  G  D  T  S  E  Q  E  R  *  G  *  V  G  W  D  V  R  V  Y  S  L  C  L  L  *  Y  I  M  P  *  L  L  V  E  S  *  V  L  S  W  S  C  C  T  T  P  C  Q  *  :  M  D  H  G  *  P  *  *  T  Y  S  G  A  P  G  R  S  *  *  *  I  Q  A  L  S  L  P  H  Y  F  E  L  F  S  C  L  P  K  G  I  *  S  W  Q  A  Q  N  I  K  R  L  E  M  A  P  *  A  C  T  L  Q  C  S  V  P  V  Y  S  A  N  I  D  F  G  G  P  V  G  G  S  S  Q  N  N  L  C  T  D  R  N  L  L  S  E  I  F  F  W  C  *  G  V  A  L  P  R  A  L  C  E  Y  G  I  L  L  C  T  V  L  P  Y  S  R  *  K  V  H  L  T  *  N  I  V  L  T  I  S  M  I  A  E  V  K  Q  T  C  N  S  R  E  Y  I  Q  I  Y  E  L  I  Y  H  R  K  *  *  F  L  *  I  F  V  *  N  Y  T  S  *  K  L  H  Q  L  Y  K  T  F  L  I  L  S  M  V  </second_frame>
            <third_frame>   F  S  L  K  N  K  R  V  T  F  M  Y  M  *  Y  E  D  E  E  L  *  Y  Q  W  L  L  V  *  S  D  E  L  F  I  G  F  S  H  L  R  R  R  R  G  Y  L  L  P  E  L  T  L  R  T  P  N  P  S  R  S  N  L  K  S  F  Q  I  Y  R  W  N  P  D  N  P  G  K  P  E  L  Q  E  Y  K  I  D  L  K  E  C  G  P  M  V  L  D  A  L  I  K  I  K  N  E  V  D  P  S  P  T  F  R  R  S  C  R  E  G  I  C  G  S  C  A  M  N  I  D  G  C  N  G  L  A  C  L  T  K  I  S  S  D  S  V  S  T  I  T  P  L  P  H  M  F  V  I  K  D  L  V  V  D  M  T  N  F  Y  N  Q  Y  K  S  I  E  P  W  L  K  R  K  T  P  A  P  T  P  G  K  E  I  P  Q  S  K  S  D  K  A  K  L  D  G  M  Y  E  C  I  L  C  A  C  C  S  T  S  C  P  S  Y  W  W  N  P  E  S  Y  L  G  P  A  A  L  L  H  A  N  R :   W  I  M  D  S  R  D  E  H  T  L  E  R  L  D  A  V  N  D  E  F  K  L  Y  R  C  H  T  I  L  N  C  S  R  A  C  P  K  G  F  N  P  G  K  L  R  T  S  S  A  W  R  W  R  L  E  P  A  L  C  S  V  V  Y  Q  S  I  L  L  T  L  I  L  E  D  Q  *  E  V  V  L  K  I  I  Y  A  Q  I  V  I  C  F  L  R  F  F  F  G  A  R  V  L  P  F  P  E  P  C  V  N  M  G  F  F  C  A  P  C  C  L  I  R  D  E  R  C  I  S  P  E  I  L  Y  *  Q  L  V  *  *  L  K  *  S  K  H  V  I  A  E  S  I  Y  K  F  M  N  *  F  I  I  E  N  N  D  F  Y  K  Y  S  F  E  I  I  P  H  K  N  F  I  N  Y  I  K  H  F  L  Y  Y  R  W  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65727" stop="66352"/>
                    <exon start="67726" stop="67957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDELFIGFSHLRRRRGYLLPELTLRTPNPSRSNLKSFQIYRWNPDNPGKPELQEYKIDLKECGPMVLDALIKIKNEVDPSPTFRRSCREGICGSCAMNIDGCNGLACLTKISSDSVSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPAPTPGKEIPQSKSDKAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEHTLERLDAVNDEFKLYRCHTILNCSRACPKGFNPGKLRTSSAWRWRLEPALCSVVYQSILLTLILEDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="70701" PGL_stop="69288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70701" e_stop="69288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70701" e_stop="69288" e_length="1414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70701" stop="69970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70701" stop="70194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70510" stop="70080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70501" stop="69904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70501" stop="70098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69942" stop="69288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69839" stop="69288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</gDNA_template>
            <first_frame> F  I  I  *  S  I  *  I  N  T  I  Q  M  H  A  L  L  N  *  S  S  P  H  H  L  H  S  S  Q  V  V  T  E  K  P  N  F  I  F  L  R  N  N  H  L  K  G  L  K  K  L  H  A  A  K  K  K  A  G  F  I  C  A  P  I  V  F  L  T  Y  K  Q  G  T  N  N  F  L  L  S  P  A  S  L  F  L  H  P  I  C  L  P  L  Y  I  T  V  P  L  F  *  L  Y  Y  S  I  S  T  S  I  N  K  N  K  S  K  K  K  *  *  K  L  L  G  K  A  K  K  L  F  S  S  K  N  N  T  M  N  *  K  T  N  M  M  K  K  H  Y  H  C  V  I  F  R  T  M  K  R  T  K  R  R  K  K  F  L  E  V  L  A  *  K  A  D  N  *  K  I  L  I  L  A  L  L  V  V  I  C  *  K  N  Q  R  C  V  R  Q  M  K  F  S  T  K  A  K  Y  Y  R  C  V  I  Q  L  V  C  Q  V  I  G  A  I  V  M  I  Q  I  Q  A  V  E  V  A  V  F  E  A  N  V  H  L  A  V  A  V  H  L  I  S  T  R  N  I  S  L  K  F  E  I  N  F  I  L  I  L  V  Q  H  L  R  F  D  F  L  K  L  V  F  N  Q  M  S  T  I  P  H  E  N  Q  H  C  G  V  Y  F  A  L  A  *  L  H  H  Q  K  L  H  Y  K  I  *  K  T  E  E  T  G  I  F  Q  E  V  E  I  A  R  A  V  V  A  A  G  A  S  A  I  M  I  I  R  *  E  L  R  K  R  N  R  G  F  L  *  A  A  V  N  V  Q  Q  M  W  *  K  Q  F  Q  S  *  T  V  E  V  Q  L  R  K  *  E  K  P  Q  G  T  M  N  M  K  I  R  R  I  H  Q  R  I  S  N  R  Q  K  S  K  Q  C  H  V  I  E  R  L  S  G  *  S  N  F  H  *  K  V  H  Q  M  K  H  K  D  F  K  V  S  R  M  L  S  F  F  F  F  F  F  F  S  C  N  V  M  *  L  F  F  F  F  E  *  W  N  H  E  V  D  *  L  K  *  L  R  T  Q  L  *  W  *  </first_frame>
            <second_frame>  L  *  Y  N  L  Y  K  L  I  P  F  K  C  M  H  C  *  I  K  V  V  P  T  I  F  T  L  P  K  *  *  Q  R  S  P  T  L  F  F  S  V  I  I  I  *  K  A  *  K  S  S  T  L  L  K  K  K  P  A  L  F  A  P  Q  *  Y  S  *  L  T  N  K  E  R  T  I  F  Y  C  R  L  Q  A  Y  S  Y  I  P  F  V  S  L  F  I  *  L  F  L  F  F  N  Y  I  I  L  Y  R  P  R  S  T  R  T  R  A  R  K  N  D  E  N  Y  *  G  K  R  R  N  C  S  P  R  R  T  I  R  *  I  R  R  R  I  *  *  R  S  I  I  T  V  *  S  S  E  Q  *  R  G  R  K  E  G  R  S  F  *  K  Y  *  R  R  R  R  T  I  R  R  F  *  F  *  L  F  W  W  *  F  V  E  R  I  R  D  V  Y  G  R  *  N  F  L  Q  R  P  N  I  T  V  A  S  F  N  *  F  A  K  *  S  A  Q  L  S  *  Y  K  F  K  Q  *  K  *  Q  Y  S  K  P  T  F  I  *  Q  W  Q  F  I  *  F  Q  H  E  I  S  A  *  N  S  K  S  I  S  F  S  S  *  S  N  T  S  G  S  I  F  *  S  *  F  S  I  K  C  Q  Q  F  H  T  K  I  S  I  V  E  S  I  S  R  W  P  S  Y  T  T  R  N  C  I  T  R  S  E  K  Q  R  K  Q  G  Y  F  R  K  S  K  *  H  E  Q  *  *  Q  R  E  L  R  Q  *  *  *  *  D  E  N  *  E  N  E  T  E  V  F  S  R  Q  L  *  M  F  S  K  C  G  R  N  S  S  N  R  E  Q  *  K  Y  N  *  E  N  K  K  S  H  R  G  P  *  T  *  R  *  E  G  F  I  R  E  Y  Q  I  D  K  K  A  S  N  V  T  S  S  N  V  *  V  V  K  A  T  F  T  R  R  S  I  R  *  N  I  K  I  S  K  Y  H  A  C  L  A  S  F  F  S  S  F  F  H  V  M  *  C  N  F  F  F  F  L  S  S  G  I  M  K  L  I  N  *  S  N  *  G  R  N  Y  N  G  S </second_frame>
            <third_frame>   Y  N  I  I  Y  I  N  *  Y  H  S  N  A  C  I  V  K  L  K  *  S  P  P  S  S  L  F  P  S  S  N  R  E  A  Q  L  Y  F  S  P  *  *  S  F  E  R  L  K  K  A  P  R  C  *  K  K  S  R  L  Y  L  R  P  N  S  I  L  D  L  Q  T  R  N  E  Q  F  S  I  V  A  C  K  L  I  P  T  S  H  L  S  P  S  L  Y  N  C  S  S  F  L  T  I  L  F  Y  I  D  L  D  Q  Q  E  Q  E  Q  E  K  M  M  K  I  T  R  E  S  E  E  I  V  L  L  E  E  Q  Y  D  E  L  E  D  E  Y  D  E  E  A  L  S  L  C  D  L  P  N  N  E  E  D  E  K  K  E  E  V  S  R  S  T  S  V  E  G  G  Q  L  E  D  F  D  F  S  S  S  G  G  N  L  L  K  E  S  E  M  C  T  A  D  E  I  F  Y  K  G  Q  I  L  P  L  R  H  S  I  S  L  P  S  D  R  R  N  C  H  D  T  N  S  S  S  R  S  S  S  I  R  S  Q  R  S  S  S  S  G  S  S  S  N  F  N  T  K  Y  Q  P  K  I  R  N  Q  F  H  S  H  P  S  P  T  P  Q  V  R  F  S  K  V  S  F  Q  S  N  V  N  N  S  T  R  K  S  A  L  W  S  L  F  R  V  G  L  V  T  P  P  E  I  A  L  Q  D  L  K  N  R  G  N  R  D  I  S  G  S  R  N  S  T  S  S  S  S  S  G  S  F  G  N  N  D  N  K  M  R  I  K  K  T  K  Q  R  F  S  L  G  S  C  K  C  S  A  N  V  V  E  T  V  P  I  V  N  S  R  S  T  I  K  K  I  R  K  A  T  G  D  H  E  H  E  D  K  K  D  S  S  E  N  I  K  S  T  K  K  Q  A  M  S  R  H  R  T  F  E  W  L  K  Q  L  S  L  E  G  P  S  D  E  T  *  R  F  Q  S  I  T  H  A  *  L  L  F  F  L  L  F  F  M  *  C  N  V  T  F  F  F  F  *  V  V  E  S  *  S  *  L  I  E  V  I  E  D  A  I  I  M  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70537" stop="69431"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSRLYLRPNSILDLQTRNEQFSIVACKLIPTSHLSPSLYNCSSFLTILFYIDLDQQEQEQEKMMKITRESEEIVLLEEQYDELEDEYDEEALSLCDLPNNEEDEKKEEVSRSTSVEGGQLEDFDFSSSGGNLLKESEMCTADEIFYKGQILPLRHSISLPSDRRNCHDTNSSSRSSSIRSQRSSSSGSSSNFNTKYQPKIRNQFHSHPSPTPQVRFSKVSFQSNVNNSTRKSALWSLFRVGLVTPPEIALQDLKNRGNRDISGSRNSTSSSSSGSFGNNDNKMRIKKTKQRFSLGSCKCSANVVETVPIVNSRSTIKKIRKATGDHEHEDKKDSSENIKSTKKQAMSRHRTFEWLKQLSLEGPSDET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="74202" PGL_stop="73703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74202" e_stop="73703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="74202" e_stop="73703" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74202" stop="73703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</gDNA_template>
            <first_frame> *  Y  *  Y  N  R  E  E  K  E  K  K  W  K  S  K  E  I  V  I  R  D  V  *  M  R  E  N  *  K  D  C  Q  W  I  Q  V  H  I  H  S  I  R  I  W  R  I  T  S  N  R  V  M  E  H  K  A  I  N  S  P  I  L  G  V  V  L  P  V  P  P  T  P  Q  P  S  Q  V  V  D  L  L  K  L  S  F  L  L  L  T  T  S  I  A  R  V  F  L  N  *  F  R  *  F  L  V  A  F  T  T  V  I  P  F  F  Y  L  G  K  I  R  I  C  R  I  I  T  I  R  T  F  *  I  S  D  S  R  S  *  I  R  P  C  L  V  L  F  V  C  S  F  R  R  L  V  T  *  *  I  Y  F  S  K  N  K  Y   </first_frame>
            <second_frame>  N  I  N  I  T  E  R  R  K  K  R  N  G  K  A  K  R  *  *  *  G  M  Y  R  *  E  K  T  R  R  I  A  S  G  Y  K  S  I  Y  T  V  *  G  F  G  G  L  Q  A  T  G  L  W  N  T  R  P  S  T  A  Q  S  W  A  W  C  C  Q  F  H  R  R  P  N  P  R  R  W  W  I  C  *  S  S  A  F  C  Y  *  Q  H  Q  S  P  G  C  S  L  I  N  F  V  N  F  *  S  H  L  Q  Q  L  F  L  F  F  T  W  V  K  Y  V  Y  V  E  *  *  Q  *  E  R  S  E  L  V  I  L  D  L  R  F  V  P  V  W  C  C  L  Y  V  P  S  V  G  L  *  L  N  K  Y  I  F  L  K  I  S  T  </second_frame>
            <third_frame>   I  L  I  *  Q  R  G  E  R  K  E  M  E  K  Q  R  D  S  N  K  G  C  I  D  E  R  K  L  E  G  L  P  V  D  T  S  P  Y  T  Q  Y  K  D  L  E  D  Y  K  Q  Q  G  Y  G  T  Q  G  H  Q  Q  P  N  P  G  R  G  A  A  S  S  T  D  A  P  T  L  A  G  G  G  S  A  E  A  Q  L  S  A  T  D  N  I  N  R  Q  G  V  P  *  L  I  S  L  I  F  S  R  I  Y  N  S  Y  S  F  F  L  L  G  *  N  T  Y  M  *  N  N  N  N  K  N  V  L  N  *  *  F  *  I  L  D  S  S  L  F  G  V  V  C  M  F  L  P  S  A  C  N  L  I  N  I  F  F  *  K  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74188" stop="73907"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGERKEMEKQRDSNKGCIDERKLEGLPVDTSPYTQYKDLEDYKQQGYGTQGHQQPNPGRGAASSTDAPTLAGGGSAEAQLSATDNINRQGVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74115" stop="73903"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDCQWIQVHIHSIRIWRITSNRVMEHKAINSPILGVVLPVPPTPQPSQVVDLLKLSFLLLTTSIARVFLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="73859" PGL_stop="74199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73859" e_stop="74199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="73859" e_stop="74199" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73859" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73864" stop="74199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</gDNA_template>
            <first_frame> K  K  G  I  T  V  V  N  A  T  K  N  *  R  N  *  L  R  N  T  L  A  I  D  V  V  S  S  R  K  L  S  F  S  R  S  T  T  C  E  G  W  G  V  G  G  T  G  S  T  T  P  R  I  G  L  L  M  A  L  C  S  I  T  L  L  L  V  I  L  Q  I  L  I  L  C  I  W  T  C  I  H  W  Q  S  F  *  F  S  L  I  Y  T  S  L  I  T  I  S  L  L  F  H  F  F  S  F  S  S  L  L  Y  *   </first_frame>
            <second_frame>  K  K  E  *  L  L  *  M  R  L  K  I  N  E  I  N  *  G  T  P  W  R  L  M  L  S  V  A  E  S  *  A  S  A  D  P  P  P  A  R  V  G  A  S  V  E  L  A  A  P  R  P  G  L  G  C  *  W  P  C  V  P  *  P  C  C  L  *  S  S  K  S  L  Y  C  V  Y  G  L  V  S  T  G  N  P  S  S  F  L  S  S  I  H  P  L  L  L  S  L  C  F  S  I  S  F  L  S  P  L  C  Y  I  N  </second_frame>
            <third_frame>   K  R  N  N  C  C  K  C  D  *  K  L  T  K  L  I  K  E  H  P  G  D  *  C  C  Q  *  Q  K  A  E  L  Q  Q  I  H  H  L  R  G  L  G  R  R  W  N  W  Q  H  H  A  Q  D  W  A  V  D  G  L  V  F  H  N  P  V  A  C  N  P  P  N  P  Y  T  V  Y  M  D  L  Y  P  L  A  I  L  L  V  F  S  H  L  Y  I  P  Y  Y  Y  L  F  A  F  P  F  L  F  F  L  L  S  V  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73942" stop="74199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAELQQIHHLRGLGRRWNWQHHAQDWAVDGLVFHNPVACNPPNPYTVYMDLYPLAILLVFSHLYIPYYYLFAFPFLFFLLSVILI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73907" stop="74119"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRNTLAIDVVSSRKLSFSRSTTCEGWGVGGTGSTTPRIGLLMALCSITLLLVILQILILCIWTCIHWQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="79750" PGL_stop="74515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79750" e_stop="79615"/>
            <exon e_start="79544" e_stop="79428"/>
            <exon e_start="78540" e_stop="78383"/>
            <exon e_start="78018" e_stop="77920"/>
            <exon e_start="76728" e_stop="76633"/>
            <exon e_start="76015" e_stop="75950"/>
            <exon e_start="75860" e_stop="75741"/>
            <exon e_start="74915" e_stop="74515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.637" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.968" e_score="0.919"/>
          <exon-intron don_prob="0.995" acc_prob="0.383" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.879" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="79750" e_stop="79615" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.637">
            <gDNA_intron_boundary i_start="79614" i_stop="79545" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79544" e_stop="79428" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="79427" i_stop="78541" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78540" e_stop="78383" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.912">
            <gDNA_intron_boundary i_start="78382" i_stop="78019" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="0.919">
            <gDNA_exon_boundary e_start="78018" e_stop="77920" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.968">
            <gDNA_intron_boundary i_start="77919" i_stop="76729" i_length="1191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76728" e_stop="76633" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.383">
            <gDNA_intron_boundary i_start="76632" i_stop="76016" i_length="617"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="76015" e_stop="75950" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.942">
            <gDNA_intron_boundary i_start="75949" i_stop="75861" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75860" e_stop="75741" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.879" acc_prob="0.890">
            <gDNA_intron_boundary i_start="75740" i_stop="74916" i_length="825"/>
          </intron>
          <exon e_serial="8" e_score="0.980">
            <gDNA_exon_boundary e_start="74915" e_stop="74515" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79750" stop="79615"/>
              <exon start="79544" stop="79428"/>
              <exon start="78540" stop="78383"/>
              <exon start="78018" stop="77920"/>
              <exon start="76728" stop="76633"/>
              <exon start="76015" stop="75950"/>
              <exon start="75860" stop="75741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76009" stop="75950"/>
              <exon start="75860" stop="75741"/>
              <exon start="74915" stop="74718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75845" stop="75741"/>
              <exon start="74915" stop="74718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75758" stop="75741"/>
              <exon start="74915" stop="74720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74915" stop="74515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG : GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG : GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG : TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGATTCTGGACCTCATTGAGGAGAAATCGCAAGGCGACTATATCCCCAGGACACACGGAGAG : GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG : GTTGCATCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG : AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG : ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</gDNA_template>
            <first_frame> Q  E  E  D  E  E  Q  R  *  I  S  G  T  K  M  A  E  H  R  G  L  T  F  N  I  S  A  M  S  F  L  V  L  R  R  F  I  R  F  Y  S  R  F  S  S   : G  C  T  T  T  Y  C  T  A  *  V  K  G  A  *  I  C  G  R  I  *  C  F  A  *  W  R  H  W  R  T  L  P  Y  F  H  P  L  P   : G  L  K  L  V  P  T  C  I  I  L  S  Q  F  R  N  Y  R  T  M  P  R  H  N  *  D  G  K  G  R  T  E  T  I  I  F  G  S  P  Q  R  R  N  S  R  K  Y  Q  R  S  *  N  K  :  F  W  Y  V  Y  Q  C  I  *  R  Q  N  W  I  L  D  L  I  E  E  K  S  Q  G  D  Y  I  P  R  T  H  G  E  :  A  F  N  V  L  R  Y  E  I  G  Q  S  Y  Y  S  H  Y  D  A  F  D  P  S  Q  Y  G  P  Q  K  S  Q  R  :  V  A  S  F  L  L  Y  L  S  D  V  E  E  G  G  E  T  M  F  P  F  E  :  N  A  Q  N  M  D  V  N  Y  D  F  R  K  C  I  G  L  K  V  K  P  R  R  G  D  G  L  L  F  Y  S  L  F  P  N  G  T  I  D  P  :  T  S  L  H  G  S  C  A  V  I  R  G  E  K  W  V  A  T  K  W  I  R  D  Q  E  M  D  E  *  T  S  T  C  L  E  V  V  L  I  *  F  F  R  N  L  M  *  P  L  T  G  T  F  E  R  I  L  Q  *  I  Y  L  V  F  V  H  I  D  L  C  Q  L  T  L  N  T  L  L  E  S  W  L  L  P  L  P  T  K  L  T  P  S  C  S  K  K  E  V  *  L  *  *  P  C  E  C  F  V  I  G  S  D  H  V  F  Q  K  C  C  T  N  T  N  I  I  M  T  L  K  R  M  C  I   </first_frame>
            <second_frame>  R  K  K  M  K  S  K  G  R  L  V  G  Q  R  W  R  S  I  G  G  L  P  S  I  F  L  L  C  L  F  L  F  F  A  G  L  F  G  S  T  L  V  S  H  Q  :  D  V  Q  L  L  T  V  R  P  R  S  R  V  L  K  S  V  E  E  F  D  V  L  P  N  G  D  T  G  E  H  S  L  T  S  I  P  F  Q  :  V  L  S  W  F  P  R  A  L  Y  F  P  N  F  A  T  T  E  Q  C  Q  G  I  I  K  M  A  K  A  E  L  K  P  S  S  L  A  L  R  K  G  E  T  A  E  N  T  K  G  V  R  T  S :   S  G  M  F  I  S  A  S  E  D  K  T  G  F  W  T  S  L  R  R  N  R  K  A  T  I  S  P  G  H  T  E  R :   H  L  M  F  C  G  T  K  *  A  R  V  I  I  H  I  M  M  R  L  I  L  L  N  M  V  L  R  R  A  K  G :   L  H  P  F  C  Y  I  Y  L  M  W  K  K  V  E  K  P  C  S  L  S  R :   M  H  R  I  W  M  L  I  M  T  S  A  S  V  L  V  *  K  *  S  R  V  E  G  M  D  Y  Y  F  T  R  C  F  Q  M  V  Q  L  I  R :   H  L  F  T  G  A  V  Q  *  S  E  V  K  N  G  L  P  Q  S  G  S  G  I  K  K  W  M  N  K  R  V  H  V  W  K  W  C  *  Y  N  S  F  V  I  *  C  S  H  S  L  E  P  L  S  E  F  Y  S  K  Y  I  *  C  L  F  I  L  I  C  V  S  *  P  L  I  R  Y  L  S  L  G  C  S  H  Y  P  Q  S  S  P  H  L  A  V  K  K  K  S  N  C  N  D  R  A  N  V  L  *  *  D  Q  I  T  C  F  K  S  V  V  L  T  Q  I  L  L  *  R  *  K  E  C  V  *  </second_frame>
            <third_frame>   G  R  R  *  R  A  K  V  D  *  W  D  K  D  G  G  A  *  G  A  Y  L  Q  Y  F  C  Y  V  F  S  C  S  S  P  V  Y  S  V  L  L  S  F  L  I  R :   M  Y  N  Y  L  L  Y  G  L  G  Q  G  C  L  N  L  W  K  N  L  M  F  C  L  M  A  T  L  E  N  T  P  L  L  P  S  P  S  R :   S  *  A  G  S  H  V  H  Y  T  F  P  I  S  Q  L  Q  N  N  A  K  A  *  L  R  W  Q  R  Q  N  *  N  H  H  L  W  L  S  A  K  E  K  Q  Q  K  I  P  K  E  L  E  Q   : V  L  V  C  L  S  V  H  L  K  T  K  L  D  S  G  P  H  *  G  E  I  A  R  R  L  Y  P  Q  D  T  R  R   : G  I  *  C  F  A  V  R  N  R  P  E  L  L  F  T  L  *  C  V  *  S  F  S  I  W  S  S  E  E  P  K   : G  C  I  L  F  V  I  F  I  *  C  G  R  R  W  R  N  H  V  P  F  R   : E  C  T  E  Y  G  C  *  L  *  L  P  Q  V  Y  W  S  E  S  E  A  A  *  R  G  W  T  T  I  L  L  A  V  S  K  W  Y  N  *  S   : D  I  S  S  R  E  L  C  S  N  P  R  *  K  M  G  C  H  K  V  D  Q  G  S  R  N  G  *  I  N  E  Y  M  S  G  S  G  V  N  I  I  L  S  *  F  N  V  A  T  H  W  N  L  *  A  N  F  T  V  N  I  S  S  V  C  S  Y  *  S  V  S  V  N  P  *  Y  V  T  *  V  L  V  A  P  I  T  H  K  A  H  P  I  L  Q  *  K  R  S  L  I  V  M  T  V  R  M  F  C  N  R  I  R  S  R  V  S  K  V  L  Y  *  H  K  Y  Y  Y  D  A  K  K  N  V  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79749" stop="79615"/>
                    <exon start="79544" stop="79428"/>
                    <exon start="78540" stop="78383"/>
                    <exon start="78018" stop="77920"/>
                    <exon start="76728" stop="76701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKMKSKGRLVGQRWRSIGGLPSIFLLCLFLFFAGLFGSTLVSHQDVQLLTVRPRSRVLKSVEEFDVLPNGDTGEHSLTSIPFQVLSWFPRALYFPNFATTEQCQGIIKMAKAELKPSSLALRKGETAENTKGVRTSSGMFISASEDKTGFWTSLRRNRKATISPGHTERHLMFCGTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="85448" PGL_stop="88500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85448" e_stop="85772"/>
            <exon e_start="86258" e_stop="86410"/>
            <exon e_start="86587" e_stop="86664"/>
            <exon e_start="86833" e_stop="86928"/>
            <exon e_start="87768" e_stop="87803"/>
            <exon e_start="87917" e_stop="88098"/>
            <exon e_start="88176" e_stop="88500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.115" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="85448" e_stop="85772" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.115">
            <gDNA_intron_boundary i_start="85773" i_stop="86257" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86258" e_stop="86410" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.849">
            <gDNA_intron_boundary i_start="86411" i_stop="86586" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86587" e_stop="86664" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.341">
            <gDNA_intron_boundary i_start="86665" i_stop="86832" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86833" e_stop="86928" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86929" i_stop="87767" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87768" e_stop="87803" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.334">
            <gDNA_intron_boundary i_start="87804" i_stop="87916" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87917" e_stop="88098" e_length="182"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="88099" i_stop="88175" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="88176" e_stop="88500" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85448" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85463" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85469" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85471" stop="85680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85471" stop="85679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85472" stop="85680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85472" stop="85679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85474" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85475" stop="85679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85483" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85506" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85527" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85527" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85527" stop="85705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85529" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85531" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85532" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85540" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85540" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85555" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85556" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85557" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85575" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85575" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85606" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85606" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85617" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85667" stop="85772"/>
              <exon start="86258" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="87991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86344" stop="86410"/>
              <exon start="86587" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86653" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86653" stop="86664"/>
              <exon start="86833" stop="86928"/>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87768" stop="87803"/>
              <exon start="87917" stop="88098"/>
              <exon start="88176" stop="88455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87982" stop="88098"/>
              <exon start="88176" stop="88490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88096" stop="88098"/>
              <exon start="88176" stop="88500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG : GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG : GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG : GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG : ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG : GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG : GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAA</gDNA_template>
            <first_frame> N  F  P  S  R  M  M  H  G  Q  K  K  K  R  T  S  I  *  L  L  F  L  L  N  S  M  V  A  R  K  F  T  N  A  K  A  K  F  I  W  L  H  S  F  *  S  D  R  S  Q  Q  K  L  P  L  V  D  H  F  I  E  Q  S  N  D  C  M  S  E  E  H  S  S  *  S  P  E  R  W  D  E  R  W  H  E  W  Q  W  I  R  W  S  *  L  G  P  R  L  G  N  *  G  A  I  *  T  K  A   : G  E  *  V  L  I  S  E  R  *  N  F  I  L  L  G  R  T  G  S  R  G  L  L  P  T  S  R  G  T  L  V  S  H  F  R  S  F  G  S  T  Y  C  C  C  K  L  Q  S  F  K   : G  S  F  K  I  S  P  G  C  K  Y  G  D  S  F  S  C  C  T  D  C  P  K  N  L  S   : G  M  E  L  C  W  R  *  A  F  I  S  S  Y  T  L  *  R  D  W  M  V  *  W  A  D  V  G  E  A  P  R   : D  L  S  S  G  *  A  V  G  I  L  *   : G  E  T  S  H  *  N  A  E  A  N  A  S  W  N  R  G  F  A  C  C  S  S  L  I  I  H  I  C  N  T  S  R  R  F  F  P  Q  Y  F  H  N  K  R  E  L  I  E  F  H  L  N  K  Q  H  K  *  T  R  H  Q  :  E  R  R  T  V  A  L  A  T  G  S  Q  G  G  R  *  S  S  K  S  C  R  *  S  S  *  W  K  A  S  L  L  Q  R  *  V  L  S  C  I  G  R  W  T  V  L  Q  M  G  R  L  S  *  I  R  G  Y  I  *  V  K  K  A  T  V  K  F  C  D  C  S  K  D  L  Y  N  *  A  S  S  Y  N  F  N  E  E  I  L  M  F  Y  A  L  D  N  A  H  A  K  N  K  R  K  R  I  I  T  Q  </first_frame>
            <second_frame>  I  F  H  H  V  *  C  M  V  K  K  K  K  E  L  L  S  S  Y  F  F  F  *  I  L  W  L  Q  E  N  S  Q  M  L  R  L  N  L  Y  G  S  I  V  S  S  P  I  E  V  N  K  S  C  R  S  W  I  I  L  S  N  K  A  T  I  V  C  R  R  N  I  R  V  K  A  L  K  D  G  M  N  G  G  T  N  G  S  G  L  G  G  R  S  W  D  P  G  L  E  I  E  V  P  F  E  Q  R  P  :  V  N  E  Y  S  S  L  K  D  E  T  L  Y  S  W  A  E  L  G  P  G  A  F  F  L  R  L  G  G  L  W  L  V  T  F  A  V  L  G  V  P  I  A  A  A  S  F  N  P  S  K  :  D  P  L  R  F  L  L  A  A  S  T  G  T  L  F  L  V  A  L  I  V  L  R  I  Y  L  :  G  W  S  Y  V  G  D  R  L  L  S  A  V  I  P  Y  E  E  T  G  W  Y  D  G  Q  M  W  V  K  P  P  E  :  I  L  A  R  D  R  L  L  G  S  Y  K  :  V  K  P  V  I  K  M  L  K  Q  T  L  V  G  T  G  A  L  L  V  A  A  V  S  L  F  I  F  A  T  P  V  E  D  F  F  R  N  T  F  T  T  N  E  N  S  L  S  S  T  S  T  N  S  T  N  K  L  G  I  R :   K  E  E  L  L  R  L  P  L  E  V  K  E  D  D  D  L  A  K  A  A  A  E  A  A  D  G  R  P  V  Y  C  R  D  R  Y  Y  R  A  L  A  G  G  Q  Y  C  K  W  E  D  L  V  K  *  E  D  I  Y  K  *  R  K  L  Q  L  N  S  V  I  A  Q  K  I  C  T  I  E  P  L  L  I  I  L  T  K  K  F  *  C  F  M  H  *  I  M  R  M  Q  R  T  K  E  R  E  S  *  P  K </second_frame>
            <third_frame>   F  S  I  T  Y  D  A  W  S  K  K  K  K  N  F  Y  L  A  T  F  S  S  E  F  Y  G  C  K  K  I  H  K  C  *  G  *  I  Y  M  A  P  *  F  L  V  R  *  K  S  T  K  A  A  A  R  G  S  F  Y  R  T  K  Q  R  L  Y  V  G  G  T  F  E  L  K  P  *  K  M  G  *  T  V  A  R  M  A  V  D  *  V  V  V  V  G  T  Q  A  W  K  L  R  C  H  L  N  K  G  R :   *  M  S  T  H  L  *  K  M  K  L  Y  T  L  G  Q  N  W  V  Q  G  P  S  S  Y  V  S  G  D  F  G  *  S  L  S  Q  F  W  E  Y  L  L  L  L  Q  A  S  I  L  Q  R :   I  L  *  D  F  S  W  L  Q  V  R  G  L  F  F  L  L  H  *  L  S  *  E  F  I  W :   D  G  A  M  L  E  I  G  F  Y  Q  Q  L  Y  L  M  K  R  L  D  G  M  M  G  R  C  G  *  S  P  Q  R :   S  *  L  G  I  G  C  W  D  L  I  R :   *  N  Q  S  L  K  C  *  S  K  R  *  L  E  Q  G  L  C  L  L  Q  Q  S  H  Y  S  Y  L  Q  H  Q  *  K  I  F  S  A  I  L  S  Q  Q  T  R  T  H  *  V  P  P  Q  Q  T  A  Q  I  N  *  A  S   : G  K  K  N  C  C  A  C  H  W  K  S  R  R  T  M  I  *  Q  K  L  P  L  K  Q  L  M  E  G  Q  F  T  A  E  I  G  I  I  V  H  W  P  V  D  S  T  A  N  G  K  T  *  L  N  K  R  I  Y  I  S  E  E  S  Y  S  *  I  L  *  L  L  K  R  S  V  Q  L  S  L  F  L  *  F  *  R  R  N  F  D  V  L  C  I  R  *  C  A  C  K  E  Q  K  K  E  N  H  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85518" stop="85772"/>
                    <exon start="86258" stop="86410"/>
                    <exon start="86587" stop="86664"/>
                    <exon start="86833" stop="86928"/>
                    <exon start="87768" stop="87803"/>
                    <exon start="87917" stop="88098"/>
                    <exon start="88176" stop="88338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILWLQENSQMLRLNLYGSIVSSPIEVNKSCRSWIILSNKATIVCRRNIRVKALKDGMNGGTNGSGLGGRSWDPGLEIEVPFEQRPVNEYSSLKDETLYSWAELGPGAFFLRLGGLWLVTFAVLGVPIAAASFNPSKDPLRFLLAASTGTLFLVALIVLRIYLGWSYVGDRLLSAVIPYEETGWYDGQMWVKPPEILARDRLLGSYKVKPVIKMLKQTLVGTGALLVAAVSLFIFATPVEDFFRNTFTTNENSLSSTSTNSTNKLGIRKEELLRLPLEVKEDDDLAKAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="93620" PGL_stop="93132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93620" e_stop="93132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="93620" e_stop="93132" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93620" stop="93132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253292" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</gDNA_template>
            <first_frame> Y  H  N  F  Q  V  W  F  F  G  *  S  S  L  T  G  K  K  K  L  N  P  N  D  G  K  N  Y  I  D  I  *  *  Y  *  L  V  N  Q  L  P  N  V  C  V  I  F  F  S  F  L  Y  I  K  L  W  C  I  V  F  H  P  *  L  E  I  L  C  S  S  S  S  M  K  E  N  F  V  G  S  I  T  S  N  G  S  Y  K  A  Q  F  K  F  D  R  S  S  N  T  D  F  E  H  F  G  R  K  K  K  L  F  G  Y  F  L  S  F  F  V  G  Y  M  Q  E  N  M  Y  R  Q  F  S  L  Y  M  S  Y  *  L  *  L  P  *  R  F  C  T  R  L  H  L  G  I  F  C  K  L  S  Y  H  V  C  Y  I </first_frame>
            <second_frame>  I  T  T  F  K  F  G  F  L  V  R  V  R  *  Q  A  K  R  S  L  I  R  M  M  A  R  I  I  *  I  Y  N  D  I  S  *  *  T  N  Y  Q  M  Y  A  *  F  F  F  L  F  C  I  L  S  C  G  A  *  C  F  I  L  N  *  R  F  Y  V  R  A  Q  V  *  K  K  I  L  L  G  A  S  P  R  M  D  L  T  K  R  N  S  N  S  I  E  A  P  I  R  I  L  N  T  L  A  E  K  K  S  F  L  D  I  F  F  L  S  L  *  D  T  C  K  K  I  C  I  D  S  F  L  F  I  C  P  I  D  C  S  Y  L  E  D  F  V  Q  G  S  I  W  E  Y  F  A  N  Y  L  I  M  F  V  I   </second_frame>
            <third_frame>   S  Q  L  S  S  L  V  F  W  L  E  F  V  N  R  Q  K  E  A  *  S  E  *  W  Q  E  L  Y  R  Y  I  M  I  L  V  S  K  P  T  T  K  C  M  R  N  F  F  F  F  F  V  Y  *  V  V  V  H  S  V  S  S  L  T  R  D  F  M  F  E  L  K  Y  E  R  K  F  C  W  E  H  H  L  E  W  I  L  Q  S  A  I  Q  I  R  S  K  L  Q  Y  G  F  *  T  L  W  P  K  K  K  A  F  W  I  F  S  F  F  L  C  R  I  H  A  R  K  Y  V  S  T  V  F  S  L  Y  V  L  L  I  V  V  T  L  K  I  L  Y  K  A  P  F  G  N  I  L  Q  I  I  L  S  C  L  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93431" stop="93210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEILCSSSSMKENFVGSITSNGSYKAQFKFDRSSNTDFEHFGRKKKLFGYFLSFFVGYMQENMYRQFSLYMSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="95579" PGL_stop="97283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95579" e_stop="97283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="95579" e_stop="97283" e_length="1705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95579" stop="96346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95834" stop="96710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95886" stop="96622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96070" stop="96980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96110" stop="96980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96111" stop="96826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96429" stop="97283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96429" stop="97252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</gDNA_template>
            <first_frame> A  F  L  V  M  L  Q  E  L  L  V  E  W  L  I  V  P  E  L  P  S  T  R  F  A  G  L  G  N  A  L  A  P  T  Y  W  Q  V  W  T  K  P  L  M  I  M  L  M  C  F  H  Y  H  L  V  E  S  I  L  I  S  T  A  T  M  L  Q  L  E  H  L  L  Q  W  R  R  V  L  W  F  L  A  L  L  E  M  L  D  P  I  N  S  V  W  L  T  K  H  L  G  S  P  P  W  V  P  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  V  F  H  F  T  R  V  I  H  Y  P  V  G  C  F  P  W  C  M  Q  V  M  P  A  M  Q  P  M  E  I  S  V  *  W  E  P  *  F  L  R  K  L  K  A  K  L  C  C  V  T  E  G  L  T  S  E  L  K  R  V  M  W  *  N  Q  P  V  E  P  A  *  F  L  L  T  Q  M  G  W  G  Y  W  L  T  P  I  Y  F  Q  R  R  L  W  V  N  *  M  A  M  K  S  R  S  I  *  H  Q  I  L  I  Q  R  P  R  F  F  L  E  E  Q  W  *  E  S  N  Q  H  R  F  L  Q  R  S  V  P  E  A  Q  I  P  S  R  R  R  Y  L  S  R  I  S  S  R  Q  V  S  I  F  W  P  V  G  A  V  Q  S  V  L  R  G  C  L  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  V  A  *  R  L  C  S  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  P  T  G  T  A  E  H  Y  *  T  *  L  P  E  N  H  L  H  L  S  V  T  A  L  G  T  W  I  P  F  Q  R  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  V  H  H  K  S  I  S  *  Q  E  E  T  S  H  V  I  Q  A  K  Y  T  A  S  Q  I  *  I  T  L  R  F  Q  L  H  S  L  P  I  P  V  Q  T  Q  S  D  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  L  L  L  C  P  I  V  P  W  K  L  *  L  N  L  K  Q  L  V  L  L  R  L  M  R  R  Y  R  I  V  *  V  L  L  L  H  Q  S  P  H  L  P  M  Y  S  A  K  L  S  G  Q  M  G  R  I  W  S  L  V  Q  L  Q  F  L  G  H  E  L  Y  E  Q  I  K  E  L  Y  I  A  A  I  D  L  M  *  S  *  S  K  K  F  M  L  L  A  H  S  A  V  M  F  R  T  K  Y  C  </first_frame>
            <second_frame>  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  R  L  Q  G  L  L  A  W  E  M  L  W  P  R  H  I  G  R  Y  G  Q  S  H  *  *  *  C  *  C  A  F  I  I  T  W  W  R  A  F  *  F  L  Q  R  R  C  C  N  W  S  I  C  C  N  G  E  G  Y  Y  G  F  L  L  C  W  K  C  W  T  Q  S  I  Q  F  G  *  P  S  T  L  D  H  H  R  G  C  R  N  S  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  C  F  T  L  R  G  *  S  I  T  Q  W  D  A  S  L  G  V  C  R  *  C  Q  Q  C  N  Q  W  K  S  L  Y  N  G  N  L  N  S  *  E  S  *  R  Q  N  C  A  V  *  R  R  G  *  R  Q  S  *  K  G  L  C  G  K  I  S  R  W  S  R  H  D  F  C  *  H  K  W  A  G  A  T  G  *  R  P  F  T  S  S  G  G  C  G  S  I  R  W  R  *  N  Q  E  V  Y  N  I  R  S  *  S  N  G  H  D  S  F  W  R  N  N  G  R  S  P  T  S  T  D  S  C  S  V  Q  F  Q  R  P  K  F  H  H  A  G  D  T  *  A  G  Y  H  R  A  R  C  Q  Y  S  G  R  L  E  R  C  S  R  S  Y  G  V  A  *  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  W  L  S  G  F  A  Q  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  H  R  L  H  H  L  Q  E  R  R  S  T  T  R  R  S  Y  R  K  T  I  Y  T  F  R  S  R  R  W  A  R  G  S  R  F  S  G  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  P  V  C  I  E  I  Q  S  I  T  N  Q  Y  H  S  K  K  K  L  H  M  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  V  F  S  C  I  P  C  R  Y  R  F  K  H  N  Q  I  Q  P  D  T  D  *  C  W  T  V  W  N  I  Q  S  C  C  Y  F  A  R  *  F  R  G  N  Y  S  *  T  *  N  S  *  F  Y  S  D  *  *  E  D  I  V  *  C  E  F  Y  C  S  I  K  A  P  I  Y  Q  C  I  R  Q  N  *  V  V  R  W  D  A  F  G  H  *  S  S  C  N  F  L  V  M  N  Y  M  N  K  L  K  S  Y  I  *  L  L  S  I  *  C  K  V  N  Q  R  N  L  C  F  L  L  T  V  Q  *  C  F  V  P  S  I  V </second_frame>
            <third_frame>   L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  V  Y  K  V  C  W  L  G  K  C  F  G  P  D  I  L  A  G  M  D  K  A  I  D  D  N  V  N  V  L  S  L  S  L  G  G  E  H  F  D  F  Y  S  D  D  V  A  I  G  A  F  A  A  M  E  K  G  I  M  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  V  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  P  L  P  S  G  M  L  P  L  V  Y  A  G  N  A  S  N  A  T  N  G  N  L  C  I  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  G  G  V  N  V  R  A  E  K  G  Y  V  V  K  S  A  G  G  A  G  M  I  F  A  N  T  N  G  L  G  L  L  A  D  A  H  L  L  P  A  A  A  V  G  Q  L  D  G  D  E  I  K  K  Y  I  T  S  D  P  N  P  T  A  T  I  L  F  G  G  T  M  V  G  V  Q  P  A  P  I  L  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  S  G  A  V  G  P  T  G  L  P  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  L  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  T  A  Y  T  T  Y  R  N  G  G  A  L  L  D  V  A  T  G  K  P  S  T  P  F  G  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  L  C  A  L  K  Y  S  P  S  Q  I  N  I  I  A  R  R  N  F  T  C  D  S  S  K  I  Y  S  V  T  D  L  N  Y  P  S  F  S  V  A  F  P  A  D  T  G  S  N  T  I  R  Y  S  R  T  L  T  N  V  G  P  S  G  T  Y  K  V  A  V  T  L  P  D  S  S  V  E  I  I  V  E  P  E  T  V  S  F  T  Q  I  N  E  K  I  S  Y  S  V  S  F  T  A  P  S  K  P  P  S  T  N  V  F  G  K  I  E  W  S  D  G  T  H  L  V  T  S  P  V  A  I  S  W  S  *  I  I  *  T  N  *  R  A  I  Y  S  C  Y  R  F  N  V  K  L  I  K  E  I  Y  A  S  C  S  Q  C  S  D  V  S  Y  Q  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95581" stop="97167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGYASGTARGMAYRARVAVYKVCWLGKCFGPDILAGMDKAIDDNVNVLSLSLGGEHFDFYSDDVAIGAFAAMEKGIMVSCSAGNAGPNQFSLANQAPWITTVGAGTVDRDFPAYVSLGNGKNFSGVSLYAGDPLPSGMLPLVYAGNASNATNGNLCIMGTLIPEKVKGKIVLCDGGVNVRAEKGYVVKSAGGAGMIFANTNGLGLLADAHLLPAAAVGQLDGDEIKKYITSDPNPTATILFGGTMVGVQPAPILAAFSSRGPNSITPEILKPDIIAPGVNILAGWSGAVGPTGLPEDDRRVEFNIISGTSMSCPHVSGLAALLKGVHPEWSPAAIRSALMTTAYTTYRNGGALLDVATGKPSTPFGHGAGHVDPVSAVNPGLVYDINADDYLNFLCALKYSPSQINIIARRNFTCDSSKIYSVTDLNYPSFSVAFPADTGSNTIRYSRTLTNVGPSGTYKVAVTLPDSSVEIIVEPETVSFTQINEKISYSVSFTAPSKPPSTNVFGKIEWSDGTHLVTSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="100755" PGL_stop="103272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100755" e_stop="103272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100755" e_stop="103272" e_length="2518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="103220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100778" stop="101552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101032" stop="101727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101805" stop="102381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101934" stop="102443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102024" stop="102754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102200" stop="103021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102218" stop="103018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102291" stop="103122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102641" stop="103272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</gDNA_template>
            <first_frame> H  P  L  P  L  I  N  A  A  V  Q  A  K  N  *  S  K  M  S  T  Y  T  L  L  V  V  V  L  V  C  L  C  H  M  S  V  A  M  V  E  K  K  T  Y  I  I  H  M  A  K  S  Q  M  P  A  I  F  D  D  H  T  H  W  Y  D  A  S  L  K  S  V  S  E  S  A  E  M  I  Y  V  Y  K  N  V  V  H  G  F  A  A  R  L  T  A  R  Q  A  E  S  L  E  T  Q  P  G  I  L  S  V  L  P  E  L  I  Y  Q  L  H  T  T  R  T  P  L  F  L  G  L  D  R  S  V  N  I  F  P  E  S  D  A  M  S  D  V  I  V  G  V  L  D  T  G  V  W  P  E  R  K  S  F  D  D  T  G  F  G  P  V  P  D  S  W  K  G  E  C  E  S  S  N  N  F  S  S  A  M  C  N  R  K  L  V  G  A  R  Y  F  S  R  G  Y  E  T  T  L  G  P  I  D  E  S  K  E  S  K  S  P  R  D  D  D  G  H  G  T  H  T  A  S  T  A  A  G  S  V  V  Q  G  A  S  L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  M  Y  K  V  C  W  L  G  G  C  F  N  S  D  I  L  A  G  M  D  K  A  I  D  D  K  V  D  V  L  S  L  S  L  G  G  S  T  P  D  Y  Y  K  D  S  I  A  I  G  A  F  A  A  M  E  K  G  I  L  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  I  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  S  L  L  N  K  M  L  P  L  V  Y  A  G  N  A  S  N  V  T  S  G  N  L  C  M  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  R  G  I  S  A  R  V  Q  K  G  F  V  V  K  E  A  G  G  A  G  M  V  L  A  N  T  A  A  N  G  E  E  L  V  A  D  A  H  L  L  P  A  A  A  V  G  Q  K  A  G  D  V  I  K  K  Y  L  F  S  D  P  N  P  T  A  E  I  L  F  G  G  T  K  V  D  I  E  P  S  P  V  V  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  T  G  A  V  G  P  T  G  M  A  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  I  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  S  A  Y  T  V  Y  K  N  G  G  A  L  V  D  V  A  T  G  K  P  S  T  P  F  D  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  M  C  A  L  K  Y  T  P  S  Q  I  N  S  L  A  R  R  N  F  T  C  D  S  S  K  T  Y  S  V  T  D  L  N  Y  P  S  F  A  V  S  F  V  A  G  S  D  G  S  N  T  I  K  Y  S  R  T  L  T  N  V  G  P  A  G  T  Y  K  V  T  V  S  S  P  N  S  S  V  K  I  I  V  E  P  E  T  L  S  F  T  Q  I  N  E  K  K  S  Y  T  V  S  F  T  A  P  S  K  S  S  A  T  D  V  F  G  R  I  E  W  S  D  G  K  H  V  V  S  S  P  V  A  I  S  W  S  *  I  I  *  R  H  S  Y  S  F  C  *  F  Y  V  *  V  D  V  F  L  L  L  S  F  I  P  A  Q  K  F  V  A  G  L  K  I  F  L  W  I  T  *  K  N  Q  R  N  V  C  L  I  Q  Y  L  A  H  C  T  V  F  *  A  I  L  I  V  N  </first_frame>
            <second_frame>  I  H  S  L  L  L  M  Q  Q  S  K  R  K  I  N  Q  K  C  L  H  T  H  Y  *  L  L  Y  L  C  A  Y  V  T  C  L  W  Q  W  W  R  R  K  H  T  S  F  T  W  L  N  H  K  C  Q  Q  Y  L  M  I  I  L  T  G  M  T  R  P  S  N  P  S  L  N  Q  Q  R  *  S  M  F  I  K  T  L  F  M  V  L  Q  Q  G  L  Q  L  D  K  L  N  P  *  R  P  N  L  G  F  S  L  F  C  L  S  *  Y  T  N  S  T  L  L  G  H  L  F  F  W  D  L  I  E  V  L  I  S  F  L  S  P  M  L  *  V  M  S  L  S  E  Y  S  I  Q  G  F  G  R  R  E  R  A  L  T  I  L  D  L  D  L  Y  Q  I  R  G  K  V  S  V  S  P  A  T  T  S  V  L  P  C  V  T  E  S  L  L  E  R  G  I  F  L  G  V  M  K  L  L  L  D  Q  L  M  S  P  R  S  L  N  L  L  G  M  M  M  D  M  E  H  T  L  L  R  Q  Q  L  V  Q  L  F  R  V  L  A  F  L  V  M  L  Q  E  L  L  V  E  W  P  I  V  P  E  L  P  C  T  K  F  A  G  L  G  D  V  L  T  L  T  Y  W  Q  G  W  T  K  P  L  M  I  K  L  M  C  F  H  Y  H  L  V  E  A  H  Q  I  T  T  K  I  A  L  Q  L  E  L  L  L  L  W  R  R  V  F  W  F  L  A  L  L  E  M  L  D  L  I  N  S  V  W  P  T  K  H  L  G  S  P  Q  S  V  L  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  A  F  H  F  T  R  V  I  H  Y  L  I  K  C  F  P  W  C  M  L  V  M  P  A  M  *  P  V  E  I  S  V  *  W  V  P  *  F  L  R  K  L  K  E  K  L  C  C  V  T  E  G  L  A  L  E  S  K  R  V  L  W  *  K  R  L  V  E  P  A  W  F  W  L  T  P  Q  Q  M  G  R  N  *  W  L  T  P  I  Y  F  Q  R  R  R  W  V  K  K  P  V  M  *  S  R  N  I  Y  S  Q  I  L  I  Q  R  P  K  F  F  L  E  E  Q  K  *  T  S  N  R  H  R  L  S  Q  R  S  V  L  E  A  Q  I  Q  S  P  R  R  Y  S  N  R  I  L  S  R  P  V  *  T  F  W  P  V  G  P  E  P  S  A  R  R  G  W  Q  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  A  A  W  R  L  *  *  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  S  T  R  T  A  E  H  *  *  M  S  P  P  E  N  H  L  H  L  S  T  T  A  L  D  T  W  I  P  F  R  Q  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  L  H  H  K  S  T  A  *  R  E  E  T  S  R  V  I  Q  A  K  H  T  A  S  Q  I  *  I  T  L  H  L  L  F  H  S  L  P  G  V  T  V  Q  T  Q  S  S  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  Q  F  L  P  Q  I  V  Q  *  K  L  *  L  S  L  K  H  *  V  S  L  R  L  M  R  R  N  R  I  Q  *  V  L  L  L  H  Q  S  P  Q  L  R  M  Y  S  V  E  L  S  G  Q  M  G  S  M  W  L  V  V  Q  L  Q  F  L  G  H  E  *  Y  E  D  I  A  I  A  S  V  N  F  M  Y  K  L  M  F  F  C  F  *  V  S  F  Q  H  K  S  L  *  L  V  S  R  F  F  Y  G  *  H  E  R  I  K  E  M  Y  A  L  Y  N  I  L  L  T  V  R  Y  F  K  Q  F  *  L  *  T </second_frame>
            <third_frame>   S  T  P  S  Y  *  C  S  S  P  S  E  K  L  I  K  N  V  Y  I  H  T  T  S  C  C  T  C  V  P  M  S  H  V  C  G  N  G  G  E  E  N  I  H  H  S  H  G  *  I  T  N  A  S  N  I  *  *  S  Y  S  L  V  *  R  V  P  Q  I  R  L  *  I  S  R  D  D  L  C  L  *  K  R  C  S  W  F  C  S  K  A  Y  S  S  T  S  *  I  L  R  D  P  T  W  D  S  L  C  F  A  *  A  D  I  P  T  P  H  Y  S  D  T  S  F  F  G  T  *  *  K  C  *  Y  L  S  *  V  R  C  Y  E  *  C  H  C  R  S  T  R  Y  R  G  L  A  G  E  K  E  L  *  R  Y  W  I  W  T  C  T  R  F  V  E  R  *  V  *  V  Q  Q  Q  L  Q  F  C  H  V  *  Q  K  A  C  W  S  E  V  F  F  *  G  L  *  N  Y  S  W  T  N  *  *  V  Q  G  V  *  I  S  *  G  *  *  W  T  W  N  T  H  C  F  D  S  S  W  F  S  C  S  G  C  *  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  H  V  Q  S  L  L  A  W  G  M  F  *  L  *  H  I  G  R  D  G  Q  S  H  *  *  *  S  *  C  A  F  I  I  T  W  W  K  H  T  R  L  L  Q  R  *  H  C  N  W  S  F  C  C  Y  G  E  G  Y  F  G  F  L  L  C  W  K  C  W  T  *  S  I  Q  F  G  Q  P  S  T  L  D  H  H  S  R  C  W  N  N  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  R  F  T  L  R  G  *  F  I  T  *  *  N  A  S  L  G  V  C  W  *  C  Q  Q  C  N  Q  W  K  S  L  Y  D  G  Y  L  N  S  *  E  S  *  R  K  N  C  A  V  *  Q  R  D  *  R  S  S  P  K  G  F  C  G  K  R  G  W  W  S  R  H  G  F  G  *  H  R  S  K  W  G  G  T  S  G  *  R  P  F  T  S  S  G  G  G  G  S  K  S  R  *  C  N  Q  E  I  F  I  L  R  S  *  S  N  G  R  N  S  F  W  R  N  K  S  R  H  R  T  V  T  G  C  R  S  V  Q  F  *  R  P  K  F  N  H  P  G  D  T  Q  T  G  Y  Y  R  A  R  C  K  H  S  G  R  L  D  R  S  R  R  P  D  G  D  G  R  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  R  L  G  G  F  D  K  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  L  R  L  H  R  L  Q  E  R  R  S  T  S  R  C  R  H  R  K  T  I  Y  T  F  R  P  R  R  W  T  R  G  S  R  F  G  S  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  H  V  C  I  E  I  H  S  I  T  N  Q  Q  L  S  E  K  K  L  H  V  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  I  C  C  F  I  R  C  R  E  *  R  F  K  H  N  Q  V  Q  P  D  I  D  *  C  W  T  G  W  N  I  Q  S  Y  S  F  F  P  K  *  F  S  E  N  Y  S  *  A  *  N  I  E  F  H  S  D  *  *  E  E  I  V  Y  S  E  F  Y  C  S  I  K  V  L  S  Y  G  C  I  R  *  N  *  V  V  R  W  E  A  C  G  *  *  S  S  C  N  F  L  V  M  N  N  M  K  T  *  L  *  L  L  L  I  L  C  I  S  *  C  F  S  A  F  K  F  H  S  S  T  K  V  C  S  W  S  Q  D  F  F  M  D  N  M  K  E  S  K  K  C  M  P  Y  T  I  S  C  S  L  Y  G  I  L  S  N  S  N  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100800" stop="103070"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSTYTLLVVVLVCLCHMSVAMVEKKTYIIHMAKSQMPAIFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTARQAESLETQPGILSVLPELIYQLHTTRTPLFLGLDRSVNIFPESDAMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGECESSNNFSSAMCNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYRARVAMYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAGPNQFSLANQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLCMMGTLIPEKVKGKIVLCDRGISARVQKGFVVKEAGGAGMVLANTAANGEELVADAHLLPAAAVGQKAGDVIKKYLFSDPNPTAEILFGGTKVDIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGMAEDDRRVEFNIISGTSMSCPHVSGLAALIKGVHPEWSPAAIRSALMTSAYTVYKNGGALVDVATGKPSTPFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKTYSVTDLNYPSFAVSFVAGSDGSNTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETLSFTQINEKKSYTVSFTAPSKSSATDVFGRIEWSDGKHVVSSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="105823" PGL_stop="106167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105823" e_stop="106167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="105823" e_stop="106167" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105823" stop="106167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</gDNA_template>
            <first_frame> S  F  F  T  *  S  F  F  K  L  *  Y  L  Q  S  N  Q  I  I  K  G  K  I  T  M  I  *  R  S  C  L  P  V  *  R  K  H  D  K  K  E  E  K  F  L  L  L  F  G  D  L  *  I  *  N  K  T  F  R  G  P  S  Q  F  *  R  A  V  K  I  M  Q  T  K  P  P  C  I  L  L  L  L  W  Y  N  T  S  P  Q  Y  L  L  E  A  K  Y  *  F  S  L  F  R  A  S  I  C  K  V  S  R  K  Q  N  *  T </first_frame>
            <second_frame>  H  S  L  R  N  L  S  S  N  Y  N  I  C  N  P  T  K  *  L  K  E  K  S  P  *  Y  R  D  H  V  C  R  F  K  E  N  M  I  R  K  K  R  N  F  S  Y  S  L  V  I  S  E  Y  E  T  R  L  S  V  D  H  H  N  S  E  E  L  L  K  S  C  K  L  S  H  H  V  F  C  Y  S  S  G  I  T  L  L  H  N  T  Y  *  K  Q  S  I  N  L  A  F  S  G  H  Q  S  A  K  C  L  E  S  K  I  E   </second_frame>
            <third_frame>   I  L  Y  V  I  F  L  Q  I  I  I  S  A  I  Q  P  N  N  *  R  K  N  H  H  D  I  E  I  M  S  A  G  L  K  K  T  *  *  E  R  R  E  I  S  L  T  L  W  *  S  L  N  M  K  Q  D  F  P  W  T  I  T  I  L  K  S  C  *  N  H  A  N  *  A  T  M  Y  S  V  T  P  L  V  *  H  F  S  T  I  L  T  R  S  K  V  L  I  *  P  F  Q  G  I  N  L  Q  S  V  S  K  A  K  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105899" stop="106099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRDHVCRFKENMIRKKRNFSYSLVISEYETRLSVDHHNSEELLKSCKLSHHVFCYSSGITLLHNTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="110543" PGL_stop="107144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110543" e_stop="110485"/>
            <exon e_start="110018" e_stop="109850"/>
            <exon e_start="109302" e_stop="109044"/>
            <exon e_start="108163" e_stop="108075"/>
            <exon e_start="107446" e_stop="107264"/>
            <exon e_start="107184" e_stop="107144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.982"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.982" e_score="0.934"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="110543" e_stop="110485" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="110484" i_stop="110019" i_length="466"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="110018" e_stop="109850" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="109849" i_stop="109303" i_length="547"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="109302" e_stop="109044" e_length="259"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109043" i_stop="108164" i_length="880"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108163" e_stop="108075" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108074" i_stop="107447" i_length="628"/>
          </intron>
          <exon e_serial="5" e_score="0.934">
            <gDNA_exon_boundary e_start="107446" e_stop="107264" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.982">
            <gDNA_intron_boundary i_start="107263" i_stop="107185" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="107184" e_stop="107144" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110543" stop="110485"/>
              <exon start="110018" stop="109850"/>
              <exon start="109302" stop="109044"/>
              <exon start="108163" stop="108075"/>
              <exon start="107446" stop="107264"/>
              <exon start="107184" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG : GCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAG : GATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</gDNA_template>
            <first_frame> V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  :  A  D  G  R  G  V  L  L  G  L  V  Y  P  C  V  L  G  A  K  M  L  G  S  T  A  F  S  W  F  S  S  G  P  L  S  L  R  T  E  E  C  L  V  Y  A  C  I  I  M  G  F  V  T  S  I  V  A  F  D  Y  Q  :  D  V  E  I  L  L  M  L  F  C  I  F  H   </first_frame>
            <second_frame>  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W :   Q  M  G  E  G  F  C  *  V  *  Y  T  P  V  Y  L  V  R  K  C  L  E  A  L  H  F  P  G  S  L  V  A  L  Y  H  S  E  Q  R  S  A  *  Y  M  P  V  L  L  W  A  L  S  L  P  L  *  L  L  I  I  R :   M  L  K  F  F  *  C  Y  S  A  Y  F  M  </second_frame>
            <third_frame>   W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C   : G  R  W  E  R  G  F  A  R  F  S  I  P  L  C  T  W  C  E  N  A  W  K  H  C  I  F  L  V  L  *  W  P  F  I  T  P  N  R  G  V  L  S  I  C  L  Y  Y  Y  G  L  C  H  F  H  C  S  F  *  L  S   : G  C  *  N  S  F  D  A  I  L  H  I  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155D20.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110543" stop="110485"/>
                    <exon start="110018" stop="109850"/>
                    <exon start="109302" stop="109044"/>
                    <exon start="108163" stop="108075"/>
                    <exon start="107446" stop="107264"/>
                    <exon start="107184" stop="107146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVADGRGVLLGLVYPCVLGAKMLGSTAFSWFSSGPLSLRTEECLVYACIIMGFVTSIVAFDYQDVEILLMLFCIFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="113583" PGL_stop="114135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113583" e_stop="114135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113583" e_stop="114135" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113583" stop="114135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</gDNA_template>
            <first_frame> S  S  S  Y  E  F  I  F  H  N  D  N  P  I  M  A  T  L  N  H  V  F  H  C  V  V  S  F  K  C  S  V  I  W  L  M  *  H  V  N  C  L  V  T  L  L  T  *  I  L  A  M  W  F  S  T  P  I  F  L  L  V  L  *  K  S  E  F  R  Q  F  D  C  F  L  C  L  I  R  L  S  F  V  F  L  F  Q  P  S  T  I  F  L  *  C  C  I  T  S  A  K  K  N  F  L  R  L  S  I  G  D  S  L  S  K  E  S  H  S  S  L  N  N  N  L  Y  G  S  A  Y  Q  C  L  H  R  F  S  Y  R  V  N  Y  F  Y  V  F  F  Q  P  L  I  I  H  *  C  L  *  S  S  S  *  L  M  F  V  L  I  L  H  *  L  V  F  I  V  A  D  D  G  S  A  R  C  A  </first_frame>
            <second_frame>  H  L  R  M  S  S  Y  F  I  M  T  T  Q  *  W  Q  L  S  I  M  C  S  T  V  *  S  P  L  N  V  L  *  F  G  S  C  S  M  *  I  V  *  S  L  F  L  H  R  Y  W  L  C  G  S  V  L  L  S  F  S  L  Y  F  E  N  L  N  L  G  N  S  I  V  F  Y  V  L  L  D  C  L  L  S  F  F  S  S  L  L  R  Y  F  C  D  V  V  *  L  L  P  K  K  I  F  L  G  F  Q  *  E  I  A  *  V  K  S  R  I  Q  V  *  T  I  I  F  M  A  L  L  I  S  V  Y  T  D  F  L  T  G  *  T  I  F  M  S  S  F  S  L  *  *  F  I  S  V  F  R  V  H  L  D  *  C  L  F  *  S  F  T  N  L  Y  L  L  L  R  M  M  A  V  Q  G  V  H </second_frame>
            <third_frame>   I  F  V  *  V  H  I  S  *  *  Q  P  N  N  G  N  S  Q  S  C  V  P  L  C  S  L  L  *  M  F  C  N  L  A  H  V  A  C  E  L  F  S  H  S  S  Y  I  D  T  G  Y  V  V  Q  Y  S  Y  L  S  P  C  T  L  K  I  *  I  *  A  I  R  L  F  F  M  S  Y  *  I  V  F  C  L  S  F  P  A  F  Y  D  I  S  V  M  L  Y  N  F  C  Q  K  K  F  S  *  A  F  N  R  R  *  P  K  *  R  V  A  F  K  S  E  Q  *  S  L  W  L  C  L  S  V  S  T  Q  I  F  L  P  G  E  L  F  L  C  L  L  S  A  S  D  N  S  L  V  S  L  E  F  I  L  I  D  V  C  F  D  P  S  L  T  C  I  Y  C  C  G  *  W  Q  C  K  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="115585" PGL_stop="114619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115585" e_stop="115541"/>
            <exon e_start="115076" e_stop="114681"/>
            <exon e_start="114627" e_stop="114619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.990"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="115585" e_stop="115541" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="115540" i_stop="115077" i_length="464"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="115076" e_stop="114681" e_length="396"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="114680" i_stop="114628" i_length="53"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="114627" e_stop="114619" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115585" stop="115541"/>
              <exon start="115076" stop="114681"/>
              <exon start="114627" stop="114619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115585" stop="115541"/>
              <exon start="115076" stop="114681"/>
              <exon start="114627" stop="114619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115585" stop="115541"/>
              <exon start="115076" stop="114681"/>
              <exon start="114627" stop="114619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA : AAGAATGAA</gDNA_template>
            <first_frame> L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  V  H  W  I  F  L  H  S  :  K  N  E </first_frame>
            <second_frame>  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  *  C  T  G  F  F  C  I  Q :   R  M   </second_frame>
            <third_frame>   P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I  S  A  L  D  F  S  A  F   : K  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155D20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 273 chains have been computed
$ 
$ memory statistics:
$ 388000 bytes spliced alignments in total
$ 186 spliced alignments have been stored
$ 2086 bytes was the average size of a spliced alignment
$ 37592 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1503 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 296 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:23:27
-->
