<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:34:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347238" ref_strand="+" ref_description="SGN-E347238 [cTOF-25-L1]">
      <seq>tggcttgtctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccattaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatccctgtttttaaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31177" stop="33064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31477" g_stop="31927" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="521" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32764" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="597" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E347238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31477" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAG</genome_strand>
        <mrna_strand>TGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATTAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCCTGTTTTTAAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725451" ref_strand="+" ref_description="SGN-E725451 [LA03BG10]">
      <seq>ggcttgtctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31178" stop="32190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31478" g_stop="31890" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E725451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31478" e_stop="31890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACT</genome_strand>
        <mrna_strand>GGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248866" ref_strand="+" ref_description="SGN-E248866 [cLEF-49-C10]">
      <seq>cttgtctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31180" stop="33039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31480" g_stop="31927" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="518" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32739" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="569" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E248866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31480" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACT</genome_strand>
        <mrna_strand>CTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322210" ref_strand="+" ref_description="SGN-E322210 [cTOB-24-L5]">
      <seq>ttgtctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctgggtttcaaaaggagccaagccacttcttgcacttgacaaatccttttccatggaacttcctgagaatctgtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31181" stop="33125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31481" g_stop="31927" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="517" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32825" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="653" r_length="136" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E322210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31481" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGAC-AATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGG</genome_strand>
        <mrna_strand>TTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGGTTTC-AAAAGGAGCCAAGCCACTTCTTGCACTTGACAAATCCTTTTCC-ATGGAACTTCCTGAGAATCTGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321635" ref_strand="+" ref_description="SGN-E321635 [cTOB-25-N15]">
      <seq>tctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtaaggagtatctaacctggagactangttgggttttggctcagtttggacttggatcttctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31184" stop="33445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31484" g_stop="31927" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="686" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33145" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="758" r_length="72" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E321635" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31484" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGG</genome_strand>
        <mrna_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGG-AGTATCTAACCTGGAGACTANGTTGGGTTTTGGCTC-AGTTTGGACTTGGATCTTCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321599" ref_strand="+" ref_description="SGN-E321599 [cTOB-25-I18]">
      <seq>tctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31184" stop="32378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31484" g_stop="31927" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E321599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31484" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG</genome_strand>
        <mrna_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322038" ref_strand="+" ref_description="SGN-E322038 [cTOB-29-P12]">
      <seq>tctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31184" stop="32133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31484" g_stop="31833" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E322038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31484" e_stop="31833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTA</genome_strand>
        <mrna_strand>TCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709592" ref_strand="+" ref_description="SGN-E709592 [FA52CB01]">
      <seq>cttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggcatcccattacccgataaaattagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtaaggaagtatctaacctggagactaggttggtttttggctcaagtttggacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcgaaacccttagctgcttggatgaatggcttggaagtctgttcgattgaagctgatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31206" stop="35229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31506" g_stop="31927" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="492" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="664" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33215" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="808" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34886" g_stop="34930" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="853" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E709592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31506" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33215"/>
          <exon e_start="34886" e_stop="34930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTG</genome_strand>
        <mrna_strand>CTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGCATCCCATTACCCGATAAAATTAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616004" ref_strand="+" ref_description="SGN-E616004 [65809]">
      <seq>ttcaaagaatgcgactccctttacttcaaactcatatacccatttccaatttcacttgtttaactgtattcccctttcaatcacttgcaatatctttaccaaaatataaggtcaagtctgttcatattccatcatgttcagcttcttccatttcatctactaatttggaagaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaactattattacaagagcttgcaatgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagcaaaagtgggcttttgtccagttgcccgtttcagctgttcgtgaggaagtatctaacctggagactagattggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacaccattgattcctgggactagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31191" stop="33483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31538" g_stop="31927" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="457" r_length="393" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="527" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="700" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33184" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="815" r_length="115" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E616004" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31538" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--G-AG--GACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAG-AAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACA-CATTGATTCCT-GGACTAGCA</genome_strand>
        <mrna_strand>TGTATTCCCCTTTCAATCACTTGCAATATCTTTACCAAAATATAAGGTCAAGTCTGTTCATATTCCATCA-TGT-T-CAGCTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAATGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGCAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCTGGAGACTAGATTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACCATTGATTCCTGGGACTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618162" ref_strand="+" ref_description="SGN-E618162 [68837]">
      <seq>aagaatgagactccctttacttcaaactcatacacccatttcaaattttcacttgtttaactgttttcccctttcaatcacttgcaatatctttaccaaaatataaggtcaagtctgttcatattccatcatgtcagtttcttccatttcatctactaatttggaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaacaattattacaagagcttgcaatgaacttgccatcaaatctgttcctaggcaaacggtgcttatcacttgtcctttgggcttgaagacccgtatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgaggaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtgaggaagtatctaacctggagactaggttggtttttgggctcaagttagacttggatcttctggggatcgaaattgaggacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31191" stop="33464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31538" g_stop="31927" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="450" r_length="389" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="521" r_length="71" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.879" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="695" r_length="174" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33164" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="788" r_length="93" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E618162" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31538" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--GAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTA-GCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTT-GGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGA-GAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTT-GGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACA</genome_strand>
        <mrna_strand>TGTTTTCCCCTTTCAATCACTTGCAATATCTTTACCAAAATATAAGGTCAAGTCTGTTCATATTCCATCA-TGTC---AGTTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACAATTATTACAAGAGCTTGCAATGAACTTGCCATCAAATCTGTTCCTAGGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGGCTTGAAGACCCGTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGGCTCAAG-TTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429835" ref_strand="+" ref_description="SGN-E429835 [STM-52-P19]">
      <seq>actccctttacttcaaactcatatacccatttccaatttcacttgtttaactgtattcccctttcaatcacttgcaatatctttaccaaaatataaggtcaagtctgttcatattccatcatgttcagcttcttccatttcatctactaatttggaagaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaactattattacaagagcttgcaatgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcctgtttcagctgttcgtgaggaagtatctaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31197" stop="33396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31538" g_stop="31927" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="444" r_length="393" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="686" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33096" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="711" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E429835" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31538" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--G-AG--GACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCT</genome_strand>
        <mrna_strand>TGTATTCCCCTTTCAATCACTTGCAATATCTTTACCAAAATATAAGGTCAAGTCTGTTCATATTCCATCA-TGT-T-CAGCTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAATGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCTGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429833" ref_strand="+" ref_description="SGN-E429833 [STM-52-P17]">
      <seq>actccctttacttcaaactcatatacccatttccaatttcacttgtttaactgtattcccctttcaatcacttgcaatatctttaccaaaatataaggtcaagtctgttcatattccatcatgttcagcttcttccatttcatctactaatttggaagaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaactattattacaagagcttgcaatgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaagagccaagccacttcttgcacttgacaatcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31197" stop="33096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31538" g_stop="31927" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="444" r_length="393" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32796" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="622" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E429833" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31538" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--G-AG--GACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTT</genome_strand>
        <mrna_strand>TGTATTCCCCTTTCAATCACTTGCAATATCTTTACCAAAATATAAGGTCAAGTCTGTTCATATTCCATCA-TGT-T-CAGCTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAATGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAAGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458065" ref_strand="+" ref_description="SGN-E458065 [cPRO-4-H7]">
      <seq>actccctttacttcaaactcatatacccatttccaatttcacttgtttaactgtattcccctttcaatcacttgcaatatctttaccaaaatataaggtcaagtctgttcatattccatcatgttcagcttcttccatttcatctactaatttggaagaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaactattattacaagagcttgcaatgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31197" stop="33014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31538" g_stop="31927" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="444" r_length="393" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32714" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="540" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E458065" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31538" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--G-AG--GACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGA</genome_strand>
        <mrna_strand>TGTATTCCCCTTTCAATCACTTGCAATATCTTTACCAAAATATAAGGTCAAGTCTGTTCATATTCCATCA-TGT-T-CAGCTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAATGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736403" ref_strand="+" ref_description="SGN-E736403 [LC05CF06]">
      <seq>attcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggcatcccattacccgataaaattacattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31241" stop="33112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31541" g_stop="31927" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="457" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32812" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="581" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E736403" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31541" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTG</genome_strand>
        <mrna_strand>ATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGCATCCCATTACCCGATAAAATTACATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309101" ref_strand="+" ref_description="SGN-E309101 [cLEZ-1-A11]">
      <seq>ttcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtaaggaagtatctaacctggagactaggttggtttttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31242" stop="33419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31542" g_stop="31927" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="456" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="628" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33119" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="676" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E309101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31542" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCT</genome_strand>
        <mrna_strand>TTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705895" ref_strand="+" ref_description="SGN-E705895 [FA28BG08]">
      <seq>gtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggcatcccattacccgataaaattagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtaaggaagtatctaacctggagactaggttggtttttggctcaagtttggacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcgaaacccttagctgcttggatgaatggcttggaagtctgttcgattgaagctgatgtttacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgactttacagaaaaatcctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31267" stop="35306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31567" g_stop="31927" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="431" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="603" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33215" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="747" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34886" g_stop="35006" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="868" r_length="121" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E705895" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31567" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33215"/>
          <exon e_start="34886" e_stop="35006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATC</genome_strand>
        <mrna_strand>GTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGCATCCCATTACCCGATAAAATTAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTTACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTTACAGAAAAATCCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594764" ref_strand="+" ref_description="SGN-E594764 [38022]">
      <seq>gtcaagtctgttcatattccatcatgttcagcttcttccatttcatctactaatttggaagaagaagaagaagaagatgatgatcccactgctgaactagtctatcttgaccctgaaattgatcctgagagcatatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatccatatctaatgacttaggcctcccattacccgataaaatccgattcttcaggtcacaaatgcaaactattattacaagagcttgcaatgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtgaggaagtatctaacctggagactagattggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcattgcatcctcacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31284" stop="33500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31584" g_stop="31927" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="417" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="589" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33200" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="717" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E594764" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31584" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAG-AG--G-AG--GACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTG</genome_strand>
        <mrna_strand>GTCAAGTCTGTTCATATTCCATCA-TGT-T-CAGCTTCTTCCATTTCATCTACTAATTTGGAAGAAGAAGAAGAAGAAGATGATGATCCCACTGCTGAACTAGTCTATCTTGACCCTGAAATTGATCCTGAGAGCATATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCCATATCTAATGACTTAGGCCTCCCATTACCCGATAAAATCCGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAATGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCTGGAGACTAGATTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCA-TTGCATCCTCACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249497" ref_strand="+" ref_description="SGN-E249497 [cLEF-56-O14]">
      <seq>taatttggaagaagaggaggacgagggatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggtatcccattacccgataaaatcagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31337" stop="33142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31637" g_stop="31927" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="362" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32842" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="516" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E249497" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31637" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGGAAGAAGAGGAGGACGA-CGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTG</genome_strand>
        <mrna_strand>TAATTTGGAAGAAGAGGAGGACGAGGGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584742" ref_strand="+" ref_description="SGN-E584742 [10569]">
      <seq>tatctgagtgggaattggatttttgctcaagaccaattcttgatattagagggaaaaagttatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtgatcactttgaaagatgctttactatccatatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31414" stop="32186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31714" g_stop="31886" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E584742" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31714" e_stop="31886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGT-ATCACTTTGAAAGATGCTTTACTATCTATATCTAAT</genome_strand>
        <mrna_strand>TATCTGAGTGGGAATTGGATTTTTGCTCAAGACCAATTCTTGATATTAGAGGGAAAAAGTTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTGATCACTTTGAAAGATGCTTTACTATCCATATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429836" ref_strand="-" ref_description="SGN-E429836 [STM-52-P19]">
      <seq>cctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcctgtttcagctgttcgtgaggaagtatctaacctggagactagattggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcaaaaccattagcagcttggatgaatggcttggaagtctgttcgattgaagctgatgtggacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgtatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagattgtattcgagttgagaattttcgtaagataaagttgtttcagagaaatggtgacgttttgcttaaaaaaaaaaaaaaaaaaaaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32403" stop="35596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32703" g_stop="32860" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33072" g_stop="33215" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="302" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34886" g_stop="35297" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="714" r_length="412" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="736"/>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E429836" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429836" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32703" e_stop="32860"/>
          <exon e_start="33072" e_stop="33215"/>
          <exon e_start="34886" e_stop="35297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTC</genome_strand>
        <mrna_strand>CCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCTGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCTGGAGACTAGATTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCAAAACCATTAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTGGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGTATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGATTGTATTCGAGTTGAGAATTTTCGTAAGATAAAGTTGTTTCAGAGAAATGGTGACGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618571" ref_strand="-" ref_description="SGN-E618571 [69250]">
      <seq>gcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtgaggaagtatctaacctggagactaggttggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcaaaaccattagcagcttggatgaatggcttggaagtctgttcgattgaagctgatgtggacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgtatccacaagcgaagctgaagcttgggaagcagcaaagaaagcctgtggaggcttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttacagaatgtagagaggcatcatagcaattagattgtaattcgagttgagaatttttgtaagatacagttgtttcagagaaatggcgacattttgctctctttgcattcacttcaatgaagttgtatcagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32479" stop="35625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32779" g_stop="32860" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33072" g_stop="33215" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="226" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34886" g_stop="35338" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="676" r_length="450" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E618571" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618571" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32779" e_stop="32860"/>
          <exon e_start="33072" e_stop="33215"/>
          <exon e_start="34886" e_stop="35338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGT-ATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACTAT</genome_strand>
        <mrna_strand>GCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTGAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCAAAACCATTAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTGGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGTATCCACAAGCGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGCTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTACAGAATGTAGAGAGGCATCATAGCAATTAGATTGTAATTCGAGTTGAGAATTTTTGTAAGATACAGTTGTTTCAGAGAAATGGCGACATTTTGCTCTCTTTGCATTCACTTCAATG--AA-G-TTGTATCAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283305" ref_strand="+" ref_description="SGN-E283305 [cLER-12-J19]">
      <seq>gtccagttgcccgtttcagctgttcgtaaggaagtatctaacctggagactaggttggtttttggctcaagtttggacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcgaaacccttagctggtatcagagctgtactatctttttttttctttttaactttattgtattaatggattatgacaattcatgagcatatggtgttcctagattgacaattttccttcatacttcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32542" stop="33634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32842" g_stop="32860" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33072" g_stop="33334" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="282" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E283305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32842" e_stop="32860"/>
          <exon e_start="33072" e_stop="33334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAA</genome_strand>
        <mrna_strand>GTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433530" ref_strand="+" ref_description="SGN-E433530 [STM-58-J17]">
      <seq>tcgtgaggaagtatctaacctggagactaggttggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcaaaaccattagcagcttggatgaatggcttggaagtctgttcgattgaagctgatgtggacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgtatccacaagcgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttacagaatgtagagaggcatcatagcaattagattgtaattcgagttgagaatttttgtaagatacagttgtttcagagaaatggcgacattttgctctctttgcattcacttcaatgaagttgtatcagacaatatcctggcatctttacaattttcggtccacagagaatagaggattaagttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32776" stop="35690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33076" g_stop="33215" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34886" g_stop="35390" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="644" r_length="504" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E433530" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33076" e_stop="33215"/>
          <exon e_start="34886" e_stop="35390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGT-ATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACTATA-CCTGACATCTTTACAA-TTTAGGTCCACAGAGAATAGATGATTAAGTTAATT</genome_strand>
        <mrna_strand>TCGTGAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCAAAACCATTAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTGGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGTATCCACAAGCGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTACAGAATGTAGAGAGGCATCATAGCAATTAGATTGTAATTCGAGTTGAGAATTTTTGTAAGATACAGTTGTTTCAGAGAAATGGCGACATTTTGCTCTCTTTGCATTCACTTCAATG--AA-G-TTGTATCAGACAATATCCTGGCATCTTTACAATTTTCGGTCCACAGAGAATAGAGGATTAAGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403572" ref_strand="+" ref_description="SGN-E403572 [PPC-11-E7]">
      <seq>tcgtgaggaagtatctaacctggagactaggttggtttttggctcaagtttagacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcaaaaccattagcagcttggatgaatggcttggaagtctgttcgattgaagctgatgtggacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgtatccacaagcgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttacagaatgtagagaggcatcatagcaattagattgtaattccagttgagaatttttgtaagatacagttgtttcagagaaatggcgacattttgctctctttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32776" stop="35605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33076" g_stop="33215" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34886" g_stop="35305" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="561" r_length="421" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E403572" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33076" e_stop="33215"/>
          <exon e_start="34886" e_stop="35305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGT-ATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCA</genome_strand>
        <mrna_strand>TCGTGAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTAGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCAAAACCATTAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTGGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGTATCCACAAGCGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTACAGAATGTAGAGAGGCATCATAGCAATTAGATTGTAATTCCAGTTGAGAATTTTTGTAAGATACAGTTGTTTCAGAGAAATGGCGACATTTTGCTCTCTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429834" ref_strand="-" ref_description="SGN-E429834 [STM-52-P17]">
      <seq>aaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcaaaaccattagcagcttggatgaatggcttggaagtctgttcgattgaagctgatgtggacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgtatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagattgtattcgagttgagaattttcgtaagataaagttgtttcaaagaaatggtgacgttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="32850" stop="35596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33150" g_stop="33215" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34886" g_stop="35296" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="477" r_length="411" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E429834" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33150" e_stop="33215"/>
          <exon e_start="34886" e_stop="35296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCT</genome_strand>
        <mrna_strand>AAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCAAAACCATTAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTGGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGTATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGATTGTATTCGAGTTGAGAATTTTCGTAAGATAAAGTTGTTTCAAAGAAATGGTGACGTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612014" ref_strand="+" ref_description="SGN-E612014 [61772]">
      <seq>ttttttttttttgaatgcaaagagagcaaaatgtcgccatttctctgaaacaactgtatcttacaaaaattctcaactcgaattacaatctaattgctatgatgcctctctacattctgtaaatgagcaaataaaagagaatgtacaaaggaaaaccttgtattctatttatcaagttatacaggaggaggtggcaggtctaacagaagccagaatccaacacaatcatccgaattcaggtcattttgaatagcaaggaagtgcaagcctccacaggctttctttgctgcttcccaagcttcagcttcgcttgtggatacaggatttttcttgtaagtcgcataaatgtagcgggtagagatacccaccgacaaaattaacgaagccttgtccacatcagcttcaatcgaacagacttccaagccattcatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="35609" stop="34588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35320" g_stop="34888" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E612014" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35320" e_stop="34888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTGAAGTAAATGCAAAGCGAGCAAAACGTTGCCATTTCTCTGAAACAGCTATATCTTACGAAAATTCTCAGCTC-AAATACAGTCTAATTGCTATGATGCCTCTCTACATTCTGGAAATGAGCAAATAAAAGAGAATGTACAAAGGAAAACCTTGTACTCTATTTATCAAGTTATACAGGAGGAGGTGGCAGGTTTAACAAAAGCCAGAATCCAACACAATCATCCGAATTCAGGTCATTTTGAATAGCAAGGAAGTGCAAACCTCCACAGGCTTTCTTTGCTGCTTCCCAAGCTTCAGCTTCACTTGTGGATGCAGGATTTTTCTTGTAAGTCGCATAAATGTAGCGGGTAGAGATACCCACCGACAAAATTAACGAAGCCTTGTCAACATCAGCTTCAATCGAACAGACTTCCAAGCCATTCATCCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGAATGCAAAGAGAGCAAAATGTCGCCATTTCTCTGAAACAACTGTATCTTACAAAAATTCTCAACTCGAATTACAATCTAATTGCTATGATGCCTCTCTACATTCTGTAAATGAGCAAATAAAAGAGAATGTACAAAGGAAAACCTTGTATTCTATTTATCAAGTTATACAGGAGGAGGTGGCAGGTCTAACAGAAGCCAGAATCCAACACAATCATCCGAATTCAGGTCATTTTGAATAGCAAGGAAGTGCAAGCCTCCACAGGCTTTCTTTGCTGCTTCCCAAGCTTCAGCTTCGCTTGTGGATACAGGATTTTTCTTGTAAGTCGCATAAATGTAGCGGGTAGAGATACCCACCGACAAAATTAACGAAGCCTTGTCCACATCAGCTTCAATCGAACAGACTTCCAAGCCATTCATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372520" ref_strand="+" ref_description="SGN-E372520 [TUS-32-M14](-)">
      <seq>tggcttggaagtctgttcgattgaagctgatgttgacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgcatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttttgttaaacctgccacctcctcctgtataacttgataaatagagtacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagactgtatttgagctgagaattttcgtaagatatagctgtttcagagaaatggcaacgttttgctcgctttgcatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="34596" stop="35609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34896" g_stop="35321" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E372520" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34896" e_stop="35321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAA</genome_strand>
        <mrna_strand>TGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293984" ref_strand="+" ref_description="SGN-E293984 [cLET-13-N5]">
      <seq>ggcttggaagtctgttcgattgaagctgatgttgacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgcatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttttgttaaacctgccacctcctcctgtataacttgataaatagagtacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagactgtatttgagctgagaattttcgtaagatatagctgtttcagagaaatggcaacgttttgctcgctttgcatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="34597" stop="35609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34897" g_stop="35322" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E293984" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34897" e_stop="35322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAAT</genome_strand>
        <mrna_strand>GGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372521" ref_strand="+" ref_description="SGN-E372521 [TUS-32-M14]">
      <seq>ggcttggaagtctgttcgattgaagctgatgttgacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgcatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttttgttaaacctgccacctcctcctgtataacttgataaatagagtacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagactgtatttgagctgagaattttcgtaagatatagctgtttcagagaaatggcaacgttttgctcgctttgcatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="34597" stop="35609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34897" g_stop="35322" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E372521" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34897" e_stop="35322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAAT</genome_strand>
        <mrna_strand>GGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615621" ref_strand="+" ref_description="SGN-E615621 [65421]">
      <seq>cttacaagaaaaatcctgtatccacaagcgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttctgttagacctgccacctcctcctgtataacttgataaatagaatacaaggttttcctttgtacattctcttttatttgctcatttacagaatgtagagaggcatcatagcaattagattgtaattcgagttgagaatttttgtaagatacagttgtttcagagaaatggcgacattttgctctctttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="34685" stop="35605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34985" g_stop="35309" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-E615621" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34985" e_stop="35309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGT-ATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTA</genome_strand>
        <mrna_strand>CTTACAAGAAAAATCCTGTATCCACAAGCGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTCTGTTAGACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAATACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTACAGAATGTAGAGAGGCATCATAGCAATTAGATTGTAATTCGAGTTGAGAATTTTTGTAAGATACAGTTGTTTCAGAGAAATGGCGACATTTTGCTCTCTTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320889" ref_strand="+" ref_description="SGN-E320889 [cTOB-27-N12]">
      <seq>tctaatgttgagattgatttgtcacttccaatttcaacttatgtgcgaggtattcttggttttaattctattaaccgtgatgattttgaagaatatcttaatcaatatttagaaatattggaaatcaaagatggcaacaaagattcattaggatggtggagtaggcgaaccgatgcatttccaactttgagcaaaatggttcgtgatgttctatctattcaagcttcatcagttgcatcagaggctgctctcagtgcggcaagatttcaaattagttatcatagacattcattggcggaagacagtttggaaacaacagttttatttagagactggtccaatgtcggaaggaggaataacaatttgccaaagttaagtaaaaaacaagcaagttggatcaaaacactaattgaatgcagtgattatgaattagagacacaagaatttctagcaagtttgctaacaccggaggatatcaccatcgatatgatgcgacaattagataaattttaaaggagaaaacaaatatttttagattacattcgagaactaattgaaacagaacccttctagaaggtggctgcgtannatttagtactcatctaatatctgtaacaatattagttttacgtataaaacttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="94919" stop="93671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94619" g_stop="93971" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E320889" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94619" e_stop="93971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTG-A--ATATGATGCTTTCAGTGCGGCAAGGTTTCAAATTGATGATCATAGACATTCATTGGCGGAAGACAGTTTCAAAACAACTGTTTTATTTAGAGATTAGTCCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGATGATGAATTAGAGGCCCAAGAATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGCGACAATTAAAATTAAATTTTAAAGGAGAAAACATATATTTTTATATTACATTCGAGAACTAATTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGCAAAATTAGTTGCTCTTCTAATATCTGTAACAAATATTAGTTTTAAGTATGAGAACTTATTGAA</genome_strand>
        <mrna_strand>TCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATGTGCGAGGTATTCTTGGTTTTAATTCTATTAACCGTGATGATTTTGAAGAATATCTTAATCAATATTTAGAAATATTGGAAATCAAAGATGGCAACAAAGATTCATTAGGATGGTGGAGTAGGCGAACCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTATCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTCTCAGTGCGGCAAGATTTCAAATTAGTTATCATAGACATTCATTGGCGGAAGACAGTTTGGAAACAACAGTTTTATTTAGAGACTGGTCCAATGTCGGAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACTAATTGAATGCAGTGATTATGAATTAGAGACACAAGAATTTCTAGCAAGTTTGCTAACACCGGAGGATATCACCATCGATATGATGCGACAATT-AGA-TAAATTTTAAAGGAGAAAACAAATATTTTTAGATTACATTCGAGAACTAATTGAAACAGAACCCTT-CTAGAAGGTGGCTGCGTANNATTTAGTACTCATCTAATATCTGTAAC-AATATTAGTTTTACGTAT-AAAACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251178" ref_strand="+" ref_description="SGN-E251178 [cLEG-10-J21]">
      <seq>tcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcaatgcggcaaggtttcaaatcggtgatcatagacattcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="95205" stop="94027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94893" g_stop="94327" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="602" r_length="571" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E251178" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94893" e_stop="94327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTA-AAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTG-A--ATATGATGCTTTCAGTGCGGCAAGGTTTCAAATTGATGATCATAGACATTCATTGGC</genome_strand>
        <mrna_strand>ATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAATGCGGCAAGGTTTCAAATCGGTGATCATAGACATTCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251179" ref_strand="+" ref_description="SGN-E251179 [cLEG-10-L21]">
      <seq>tcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="95205" stop="94082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94893" g_stop="94381" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="545" r_length="514" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E251179" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94893" e_stop="94381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTA-AAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGAATA</genome_strand>
        <mrna_strand>ATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238157" ref_strand="+" ref_description="SGN-E238157 [cLED-22-P14]">
      <seq>tggaattctctttacgaaatgctttcggttgcttataaatatagaagacccatacaaatggtttttaatgccataatgctgacccattagatagaatttgtgatgaagattgggaagaaactaaagaacgattacaatttttaagacttttttatgatgctactaccatgttttcgggaatttattatcctactatttcatccgtattaataaatatttgtgctctttcaattcgattttgtaaatataaaaaaatagataaatttagagttgcaattgaaggtatgattgaaacattttaaaaatatttttttcctattcctcaagcttttttaacggctactttacttcatcctgcttataaattacaaggtgtgcaaggccttgttgacactttttataaaaagttagaaattttaccggaagaaattttaaattgtcaagcgtgtagtctagcataaaagtagaagcaaaagttttgtatgaaaaatatagaactattgaaaattttcaaggagaagttggtcaaacatctaatgttgagattgattcgtcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="95445" stop="94291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95145" g_stop="94591" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E238157" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95145" e_stop="94591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTTTATGAAATGCATTCGGTTGTTTACAAATATAGAAGACCCATAAAAATGGTTTTTAATACTCATAATGCAGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACTATTACAATTTTTAAGACTTTTTTATGATGCGATTACCATGTTTTCTGAAATTTATTATCCTACTATTTTATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTGTGT-AA-AT-----AATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTA-AAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCC</genome_strand>
        <mrna_strand>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTATAAATATAGAAGACCCATACAAATGGTTTTTAATGC-CATAATGCTGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACGATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCGGGAATTTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCGATTTTGTAAATATAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAACATTTTAAAAATATTTTTTTCCTATTCCTCAAGCTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGCAAGGCCTTGTTGACACTTTTTATAAAAAGTTAGAAATTTTACCGGAAGAAATTTTAAATTGTCAAGCGTGT-AGTCTAGCATAAAAGTAGAAGCAAAAGTTTTGTATGAAAAATATAGAACTATTGAAAATTTTCAAGGAGAAGTTGGTCAAACATCTAATGTTGAGATTGATTCGTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378787" ref_strand="+" ref_description="SGN-E378787 [TUS-35-B7]">
      <seq>caacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtagatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcataattggaatttgcaaaaaagaattatatgttataaactatgtatagagaaaaaaactggtgcatatttagcttcaaatattttaagtgttttagattattacatgattatagataaaataatgtctgtcgcattagataatgcatctaataatacaaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="96476" stop="95092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96176" g_stop="95392" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E378787" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96176" e_stop="95392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCCTAAAACTTCTATTTTGTGGCAATTTGTGACTTTCGATAAAGAAAATAGTGTTGGTATTTGTAATAAGTGTAAGCAACCTTTTAAACA-CAACAAGGTGGGGGTCAAGGTGGAACGGGAGGATTAAACAGACATTTGTTATCTTGTGTGACAATTCAATACAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAAAAATTAATGAATTTAATATTACCGGCAATGCATCGATAGGGGCTTATAACATGGTTCAAGAAACATTAGATCCTTTTAACCCCGCTGGTCCAATAACACAACGTAAATATAATAAGGACTTAGATCGGGAAAATTTAGCTAAAATGGTTTTTGTTTGTGGTTTTCCTTATAGTTTTTCTTCAAATCCCGATTTTATTGAATATATTCAACAAACTTATAATCCGGATTACAGAGGCTTTTTAAGAAATACTGTTAAATCTGATGTTTTTGATTTTCACGGTAAAAATTATCAATTTCATCGTTGTATATTTAGCAAATTAGATAGTAGAGTGTCTATAACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATTATTTAACGATTACTGCACATTGGATTGATCATAATTGGAATTTGTAAAAAAGAAATATAAGTTATAAACTATGTATAGAGAAAAAAACTAGTGCATATTTAGCTTCAAATATTTTAAGTGTTTTAGATTATTACATGATTATATATAAAATAATATCTGTCGCATTAGATAATGCATCTACTAATACAAACGCTGC</genome_strand>
        <mrna_strand>CAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTC-------AATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCTAAC--GGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAGATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATTATATGTTATAAACTATGTATAGAGAAAAAAACTGGTGCATATTTAGCTTCAAATATTTTAAGTGTTTTAGATTATTACATGATTATAGATAAAATAATGTCTGTCGCATTAGATAATGCATCTAATAATACAAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392586" ref_strand="+" ref_description="SGN-E392586 [TUS-35-B13]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtaaatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="96502" stop="95255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96202" g_stop="95555" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E392586" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96202" e_stop="95555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTCTATTTTGTGGCAATTTGTGACTTTCGATAAAGAAAATAGTGTTGGTATTTGTAATAAGTGTAAGCAACCTTTTAAACA-CAACAAGGTGGGGGTCAAGGTGGAACGGGAGGATTAAACAGACATTTGTTATCTTGTGTGACAATTCAATACAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAAAAATTAATGAATTTAATATTACCGGCAATGCATCGATAGGGGCTTATAACATGGTTCAAGAAACATTAGATCCTTTTAACCCCGCTGGTCCAATAACACAACGTAAATATAATAAGGACTTAGATCGGGAAAATTTAGCTAAAATGGTTTTTGTTTGTGGTTTTCCTTATAGTTTTTCTTCAAATCCCGATTTTATTGAATATATTCAACAAACTTATAATCCGGATTACAGAGGCTTTTTAAGAAATACTGTTAAATCTGATGTTTTTGATTTTCACGGTAAAAATTATCAATTTCATCGTTGTATATTTAGCAAATTAGATAGTAGAGTGTCTATAACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATTATTTAACGATTACTGCACATTGGATTGATCATA</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTC-------AATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCTAAC--GGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAAATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392581" ref_strand="+" ref_description="SGN-E392581 [TUS-35-B7]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcataatagatagtaaagtgtctattacttcggacatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="96502" stop="95309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96202" g_stop="95609" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E392581" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96202" e_stop="95609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTCTATTTTGTGGCAATTTGTGACTTTCGATAAAGAAAATAGTGTTGGTATTTGTAATAAGTGTAAGCAACCTTTTAAACA-CAACAAGGTGGGGGTCAAGGTGGAACGGGAGGATTAAACAGACATTTGTTATCTTGTGTGACAATTCAATACAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAAAAATTAATGAATTTAATATTACCGGCAATGCATCGATAGGGGCTTATAACATGGTTCAAGAAACATTAGATCCTTTTAACCCCGCTGGTCCAATAACACAACGTAAATATAATAAGGACTTAGATCGGGAAAATTTAGCTAAAATGGTTTTTGTTTGTGGTTTTCCTTATAGTTTTTCTTCAAATCCCGATTTTATTGAATATATTCAACAAACTTATAATCCGGATTACAGAGGCTTTTTAAGAAATACTGTTAAATCTGATGTTTTTGATTTTCACGGTAAAAATTATCAATTTCATCGTTGTATATTTAGCAAATTAGATAGTAGAGTGTCTATAACTTCGGACATGGGTC</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTC-------AATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCTAAC--GGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAATAGATAGTAAAGTGTCTATTACTTCGGACATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274025" ref_strand="+" ref_description="SGN-E274025 [cLEN-8-D3]">
      <seq>tcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="96501" stop="95650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96201" g_stop="95963" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E274025" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96201" e_stop="95963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTCTATTTTGTGGCAATTTGTGACTTTCGATAAAGAAAATAGTGTTGGTATTTGTAATAAGTGTAAGCAACCTTTTAAACA-CAACAAGGTGGGGGTCAAGGTGGAACGGGAGGATTAAACAGACATTTGTTATCTTGTGTGACAATTCAATACAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAA</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249673" ref_strand="+" ref_description="SGN-E249673 [cLEF-56-L5]">
      <seq>ttttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="108472" stop="107596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108172" g_stop="107896" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-E249673" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108172" e_stop="107896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGCTTATTATTCATCTGAGAACCAACTAGCTGATATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGACAAAGAATTGGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTAACA-TTTTTCAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGGCTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31477" PGL_stop="35390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31477" e_stop="31927"/>
            <exon e_start="31999" e_stop="32068"/>
            <exon e_start="32689" e_stop="32860"/>
            <exon e_start="33072" e_stop="33215"/>
            <exon e_start="34886" e_stop="35390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31477" e_stop="31927" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31999" e_stop="32068" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32689" e_stop="32860" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33072" e_stop="33215" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="34886" e_stop="35390" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31477" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31478" stop="31890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31480" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31481" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31927"/>
              <exon start="31999" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31506" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33215"/>
              <exon start="34886" stop="34930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31541" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31542" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31567" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33215"/>
              <exon start="34886" stop="35006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31584" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31637" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31714" stop="31886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32703" stop="32860"/>
              <exon start="33072" stop="33215"/>
              <exon start="34886" stop="35297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429836" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32779" stop="32860"/>
              <exon start="33072" stop="33215"/>
              <exon start="34886" stop="35338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33076" stop="33215"/>
              <exon start="34886" stop="35390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33076" stop="33215"/>
              <exon start="34886" stop="35305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33150" stop="33215"/>
              <exon start="34886" stop="35296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429834" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34896" stop="35321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34897" stop="35322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34897" stop="35322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34985" stop="35309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG : GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG : TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG : CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTG : CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACTATACCTGACATCTTTACAATTTAGGTCCACAGAGAATAGATGATTAAGTTAATT</gDNA_template>
            <first_frame> W  L  V  *  A  A  V  S  L  Y  F  K  L  I  K  R  F  P  I  S  V  Y  S  P  L  N  Q  L  Q  Y  V  Y  Q  N  V  R  *  S  L  F  I  F  H  Q  F  L  K  L  L  L  F  H  L  L  I  W  K  K  R  R  T  T  I  P  L  L  N  L  F  I  L  T  L  K  L  I  L  R  A  Y  L  S  G  N  W  I  F  V  Q  D  Q  F  L  I  L  E  G  K  N  Y  G  S  F  L  F  V  M  I  P  S  L  F  S  I  P  N  I  F  L  I  I  L  S  I  V  S  L  *  K  M  L  Y  Y  L  Y  L  M  T  *  V  S  H  Y  P  I  K  S  D  S  S   : G  H  K  C  K  L  L  L  Q  E  L  A  T  N  L  P  S  N  L  F  L  A  N  G :   A  Y  H  L  S  F  G  L  K  T  A  M  K  L  F  I  L  A  I  L  V  F  K  K  E  P  S  H  F  L  H  L  T  I  L  F  Q  W  N  F  L  R  I  C  M  E  K  S  G  L  L  S  S  C  P  F  Q  :  L  F  V  R  K  Y  L  T  W  R  L  G  W  F  L  A  Q  V  W  T  W  I  F  W  G  S  K  L  R  T  T  H  *  F  L  D  *  Q  L  H  P  H  V  R  N  P  *  L  :  L  G  *  M  A  W  K  S  V  R  L  K  L  M  L  T  R  L  R  *  F  C  R  W  V  S  L  P  A  T  F  M  R  L  T  R  K  I  L  H  P  Q  V  K  L  K  L  G  K  Q  Q  R  K  P  V  E  V  C  T  S  L  L  F  K  M  T  *  I  R  M  I  V  L  D  S  G  F  C  *  T  C  H  L  L  L  Y  N  L  I  N  R  V  Q  G  F  P  L  Y  I  L  F  Y  L  L  I  S  R  M  *  R  G  I  I  A  I  R  L  Y  L  S  *  E  F  S  *  D  I  A  V  S  E  K  W  Q  R  F  A  R  F  A  F  T  S  M  K  M  I  V  S  D  Y  T  *  H  L  Y  N  L  G  P  Q  R  I  D  D  *  V  N  </first_frame>
            <second_frame>  G  L  S  K  L  Q  S  P  F  T  S  N  S  *  S  D  F  Q  F  Q  C  I  P  L  *  I  S  C  N  M  F  T  K  M  *  G  E  V  C  S  Y  S  I  S  F  *  S  F  F  Y  F  I  Y  *  F  G  R  R  G  G  R  R  S  H  C  *  T  C  L  S  *  P  *  N  *  S  *  E  L  I  *  V  G  I  G  F  L  F  K  T  N  S  *  Y  *  R  E  K  I  M  G  A  S  C  L  *  *  F  P  L  S  S  V  Y  Q  I  F  S  *  *  S  Y  Q  *  Y  H  F  E  R  C  F  T  I  Y  I  *  *  L  R  Y  P  I  T  R  *  N  Q  I  L  Q  :  V  T  N  A  N  Y  Y  Y  K  S  L  Q  R  T  C  H  Q  T  C  S  *  Q  T   : V  L  I  T  C  P  L  A  *  R  P  L  *  N  C  L  Y  S  P  S  W  F  S  K  R  S  Q  A  T  S  C  T  *  Q  S  F  S  N  G  T  S  *  E  S  V  W  R  K  V  G  F  C  P  V  A  R  F  S :   C  S  *  G  S  I  *  P  G  D  *  V  G  F  W  L  K  F  G  L  G  S  S  G  D  R  N  *  G  Q  H  I  D  S  W  T  S  S  C  I  L  T  C  E  T  L  S  C :   L  D  E  W  L  G  S  L  F  D  *  S  *  C  *  Q  G  F  V  N  F  V  G  G  Y  L  Y  P  L  H  L  C  D  L  Q  E  K  S  C  I  H  K  *  S  *  S  L  G  S  S  K  E  S  L  W  R  F  A  L  P  C  Y  S  K  *  P  E  F  G  *  L  C  W  I  L  A  F  V  K  P  A  T  S  S  C  I  T  *  *  I  E  Y  K  V  F  L  C  T  F  S  F  I  C  S  F  P  E  C  R  E  A  S  *  Q  L  D  C  I  *  A  E  N  F  R  K  I  *  L  F  Q  R  N  G  N  V  L  L  A  L  H  L  L  Q  *  K  *  L  Y  Q  T  I  P  D  I  F  T  I  *  V  H  R  E  *  M  I  K  L  I </second_frame>
            <third_frame>   A  C  L  S  C  S  L  P  L  L  Q  T  H  K  A  I  S  N  F  S  V  F  P  F  K  S  V  A  I  C  L  P  K  C  K  V  K  S  V  H  I  P  S  V  S  E  A  S  S  I  S  S  T  N  L  E  E  E  E  D  D  D  P  T  A  E  L  V  Y  L  D  P  E  I  D  P  E  S  L  S  E  W  E  L  D  F  C  S  R  P  I  L  D  I  R  G  K  K  L  W  E  L  L  V  C  D  D  S  L  S  L  Q  Y  T  K  Y  F  P  N  N  L  I  N  S  I  T  L  K  D  A  L  L  S  I  S  N  D  L  G  I  P  L  P  D  K  I  R  F  F  R :   S  Q  M  Q  T  I  I  T  R  A  C  N  E  L  A  I  K  P  V  P  S  K  R  :  C  L  S  L  V  L  W  L  E  D  R  Y  E  T  V  Y  T  R  H  P  G  F  Q  K  G  A  K  P  L  L  A  L  D  N  P  F  P  M  E  L  P  E  N  L  Y  G  E  K  W  A  F  V  Q  L  P  V  S   : A  V  R  K  E  V  S  N  L  E  T  R  L  V  F  G  S  S  L  D  L  D  L  L  G  I  E  I  E  D  N  T  L  I  P  G  L  A  V  A  S  S  R  A  K  P  L  A   : A  W  M  N  G  L  E  V  C  S  I  E  A  D  V  D  K  A  S  L  I  L  S  V  G  I  S  T  R  Y  I  Y  A  T  Y  K  K  N  P  A  S  T  S  E  A  E  A  W  E  A  A  K  K  A  C  G  G  L  H  F  L  A  I  Q  N  D  L  N  S  D  D  C  V  G  F  W  L  L  L  N  L  P  P  P  P  V  *  L  D  K  *  S  T  R  F  S  F  V  H  S  L  L  F  A  H  F  Q  N  V  E  R  H  H  S  N  *  T  V  F  E  L  R  I  F  V  R  Y  S  C  F  R  E  M  A  T  F  C  S  L  C  I  Y  F  N  E  N  D  C  I  R  L  Y  L  T  S  L  Q  F  R  S  T  E  N  R  *  L  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31479" stop="31927"/>
                    <exon start="31999" stop="32068"/>
                    <exon start="32689" stop="32860"/>
                    <exon start="33072" stop="33215"/>
                    <exon start="34886" stop="35145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACLSCSLPLLQTHKAISNFSVFPFKSVAICLPKCKVKSVHIPSVSEASSISSTNLEEEEDDDPTAELVYLDPEIDPESLSEWELDFCSRPILDIRGKKLWELLVCDDSLSLQYTKYFPNNLINSITLKDALLSISNDLGIPLPDKIRFFRSQMQTIITRACNELAIKPVPSKRCLSLVLWLEDRYETVYTRHPGFQKGAKPLLALDNPFPMELPENLYGEKWAFVQLPVSAVRKEVSNLETRLVFGSSLDLDLLGIEIEDNTLIPGLAVASSRAKPLAAWMNGLEVCSIEADVDKASLILSVGISTRYIYATYKKNPASTSEAEAWEAAKKACGGLHFLAIQNDLNSDDCVGFWLLLNLPPPPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31477" e_stop="31927"/>
            <exon e_start="31999" e_stop="32068"/>
            <exon e_start="32689" e_stop="32860"/>
            <exon e_start="33072" e_stop="33334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31477" e_stop="31927" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31999" e_stop="32068" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32689" e_stop="32860" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33072" e_stop="33334" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31477" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31478" stop="31890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31480" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31481" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31927"/>
              <exon start="31999" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31484" stop="31833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31538" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31541" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31542" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31584" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31637" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31714" stop="31886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32842" stop="32860"/>
              <exon start="33072" stop="33334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG : GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG : TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG : CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAA</gDNA_template>
            <first_frame> W  L  V  *  A  A  V  S  L  Y  F  K  L  I  K  R  F  P  I  S  V  Y  S  P  L  N  Q  L  Q  Y  V  Y  Q  N  V  R  *  S  L  F  I  F  H  Q  F  L  K  L  L  L  F  H  L  L  I  W  K  K  R  R  T  T  I  P  L  L  N  L  F  I  L  T  L  K  L  I  L  R  A  Y  L  S  G  N  W  I  F  V  Q  D  Q  F  L  I  L  E  G  K  N  Y  G  S  F  L  F  V  M  I  P  S  L  F  S  I  P  N  I  F  L  I  I  L  S  I  V  S  L  *  K  M  L  Y  Y  L  Y  L  M  T  *  V  S  H  Y  P  I  K  S  D  S  S   : G  H  K  C  K  L  L  L  Q  E  L  A  T  N  L  P  S  N  L  F  L  A  N  G :   A  Y  H  L  S  F  G  L  K  T  A  M  K  L  F  I  L  A  I  L  V  F  K  K  E  P  S  H  F  L  H  L  T  I  L  F  Q  W  N  F  L  R  I  C  M  E  K  S  G  L  L  S  S  C  P  F  Q  :  L  F  V  R  K  Y  L  T  W  R  L  G  W  F  L  A  Q  V  W  T  W  I  F  W  G  S  K  L  R  T  T  H  *  F  L  D  *  Q  L  H  P  H  V  R  N  P  *  L  V  S  E  L  Y  Y  L  F  F  S  F  *  L  Y  C  I  N  G  L  *  Q  F  M  S  I  W  C  S  *  I  D  N  F  P  S  Y  F  F  Y   </first_frame>
            <second_frame>  G  L  S  K  L  Q  S  P  F  T  S  N  S  *  S  D  F  Q  F  Q  C  I  P  L  *  I  S  C  N  M  F  T  K  M  *  G  E  V  C  S  Y  S  I  S  F  *  S  F  F  Y  F  I  Y  *  F  G  R  R  G  G  R  R  S  H  C  *  T  C  L  S  *  P  *  N  *  S  *  E  L  I  *  V  G  I  G  F  L  F  K  T  N  S  *  Y  *  R  E  K  I  M  G  A  S  C  L  *  *  F  P  L  S  S  V  Y  Q  I  F  S  *  *  S  Y  Q  *  Y  H  F  E  R  C  F  T  I  Y  I  *  *  L  R  Y  P  I  T  R  *  N  Q  I  L  Q  :  V  T  N  A  N  Y  Y  Y  K  S  L  Q  R  T  C  H  Q  T  C  S  *  Q  T   : V  L  I  T  C  P  L  A  *  R  P  L  *  N  C  L  Y  S  P  S  W  F  S  K  R  S  Q  A  T  S  C  T  *  Q  S  F  S  N  G  T  S  *  E  S  V  W  R  K  V  G  F  C  P  V  A  R  F  S :   C  S  *  G  S  I  *  P  G  D  *  V  G  F  W  L  K  F  G  L  G  S  S  G  D  R  N  *  G  Q  H  I  D  S  W  T  S  S  C  I  L  T  C  E  T  L  S  W  Y  Q  S  C  T  I  F  F  F  L  F  N  F  I  V  L  M  D  Y  D  N  S  *  A  Y  G  V  P  R  L  T  I  F  L  H  T  S  F  I  </second_frame>
            <third_frame>   A  C  L  S  C  S  L  P  L  L  Q  T  H  K  A  I  S  N  F  S  V  F  P  F  K  S  V  A  I  C  L  P  K  C  K  V  K  S  V  H  I  P  S  V  S  E  A  S  S  I  S  S  T  N  L  E  E  E  E  D  D  D  P  T  A  E  L  V  Y  L  D  P  E  I  D  P  E  S  L  S  E  W  E  L  D  F  C  S  R  P  I  L  D  I  R  G  K  K  L  W  E  L  L  V  C  D  D  S  L  S  L  Q  Y  T  K  Y  F  P  N  N  L  I  N  S  I  T  L  K  D  A  L  L  S  I  S  N  D  L  G  I  P  L  P  D  K  I  R  F  F  R :   S  Q  M  Q  T  I  I  T  R  A  C  N  E  L  A  I  K  P  V  P  S  K  R  :  C  L  S  L  V  L  W  L  E  D  R  Y  E  T  V  Y  T  R  H  P  G  F  Q  K  G  A  K  P  L  L  A  L  D  N  P  F  P  M  E  L  P  E  N  L  Y  G  E  K  W  A  F  V  Q  L  P  V  S   : A  V  R  K  E  V  S  N  L  E  T  R  L  V  F  G  S  S  L  D  L  D  L  L  G  I  E  I  E  D  N  T  L  I  P  G  L  A  V  A  S  S  R  A  K  P  L  A  G  I  R  A  V  L  S  F  F  F  F  L  T  L  L  Y  *  W  I  M  T  I  H  E  H  M  V  F  L  D  *  Q  F  S  F  I  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31479" stop="31927"/>
                    <exon start="31999" stop="32068"/>
                    <exon start="32689" stop="32860"/>
                    <exon start="33072" stop="33265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACLSCSLPLLQTHKAISNFSVFPFKSVAICLPKCKVKSVHIPSVSEASSISSTNLEEEEDDDPTAELVYLDPEIDPESLSEWELDFCSRPILDIRGKKLWELLVCDDSLSLQYTKYFPNNLINSITLKDALLSISNDLGIPLPDKIRFFRSQMQTIITRACNELAIKPVPSKRCLSLVLWLEDRYETVYTRHPGFQKGAKPLLALDNPFPMELPENLYGEKWAFVQLPVSAVRKEVSNLETRLVFGSSLDLDLLGIEIEDNTLIPGLAVASSRAKPLAGIRAVLSFFFFLTLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35320" PGL_stop="34888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35320" e_stop="34888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="35320" e_stop="34888" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35320" stop="34888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATTGAAGTAAATGCAAAGCGAGCAAAACGTTGCCATTTCTCTGAAACAGCTATATCTTACGAAAATTCTCAGCTCAAATACAGTCTAATTGCTATGATGCCTCTCTACATTCTGGAAATGAGCAAATAAAAGAGAATGTACAAAGGAAAACCTTGTACTCTATTTATCAAGTTATACAGGAGGAGGTGGCAGGTTTAACAAAAGCCAGAATCCAACACAATCATCCGAATTCAGGTCATTTTGAATAGCAAGGAAGTGCAAACCTCCACAGGCTTTCTTTGCTGCTTCCCAAGCTTCAGCTTCACTTGTGGATGCAGGATTTTTCTTGTAAGTCGCATAAATGTAGCGGGTAGAGATACCCACCGACAAAATTAACGAAGCCTTGTCAACATCAGCTTCAATCGAACAGACTTCCAAGCCATTCATCCA</gDNA_template>
            <first_frame> F  H  *  S  K  C  K  A  S  K  T  L  P  F  L  *  N  S  Y  I  L  R  K  F  S  A  Q  I  Q  S  N  C  Y  D  A  S  L  H  S  G  N  E  Q  I  K  E  N  V  Q  R  K  T  L  Y  S  I  Y  Q  V  I  Q  E  E  V  A  G  L  T  K  A  R  I  Q  H  N  H  P  N  S  G  H  F  E  *  Q  G  S  A  N  L  H  R  L  S  L  L  L  P  K  L  Q  L  H  L  W  M  Q  D  F  S  C  K  S  H  K  C  S  G  *  R  Y  P  P  T  K  L  T  K  P  C  Q  H  Q  L  Q  S  N  R  L  P  S  H  S  S  </first_frame>
            <second_frame>  F  I  E  V  N  A  K  R  A  K  R  C  H  F  S  E  T  A  I  S  Y  E  N  S  Q  L  K  Y  S  L  I  A  M  M  P  L  Y  I  L  E  M  S  K  *  K  R  M  Y  K  G  K  P  C  T  L  F  I  K  L  Y  R  R  R  W  Q  V  *  Q  K  P  E  S  N  T  I  I  R  I  Q  V  I  L  N  S  K  E  V  Q  T  S  T  G  F  L  C  C  F  P  S  F  S  F  T  C  G  C  R  I  F  L  V  S  R  I  N  V  A  G  R  D  T  H  R  Q  N  *  R  S  L  V  N  I  S  F  N  R  T  D  F  Q  A  I  H  P </second_frame>
            <third_frame>   S  L  K  *  M  Q  S  E  Q  N  V  A  I  S  L  K  Q  L  Y  L  T  K  I  L  S  S  N  T  V  *  L  L  *  C  L  S  T  F  W  K  *  A  N  K  R  E  C  T  K  E  N  L  V  L  Y  L  S  S  Y  T  G  G  G  G  R  F  N  K  S  Q  N  P  T  Q  S  S  E  F  R  S  F  *  I  A  R  K  C  K  P  P  Q  A  F  F  A  A  S  Q  A  S  A  S  L  V  D  A  G  F  F  L  *  V  A  *  M  *  R  V  E  I  P  T  D  K  I  N  E  A  L  S  T  S  A  S  I  E  Q  T  S  K  P  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35272" stop="35069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSYILRKFSAQIQSNCYDASLHSGNEQIKENVQRKTLYSIYQVIQEEVAGLTKARIQHNHPNSGHFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="95145" PGL_stop="93971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95145" e_stop="93971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="95145" e_stop="93971" e_length="1175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95145" stop="94591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94893" stop="94327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94893" stop="94381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94619" stop="93971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAATTCTCTTTATGAAATGCATTCGGTTGTTTACAAATATAGAAGACCCATAAAAATGGTTTTTAATACTCATAATGCAGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACTATTACAATTTTTAAGACTTTTTTATGATGCGATTACCATGTTTTCTGAAATTTATTATCCTACTATTTTATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTGTGTAAATAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTAAAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGAATATGATGCTTTCAGTGCGGCAAGGTTTCAAATTGATGATCATAGACATTCATTGGCGGAAGACAGTTTCAAAACAACTGTTTTATTTAGAGATTAGTCCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGATGATGAATTAGAGGCCCAAGAATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGCGACAATTAAAATTAAATTTTAAAGGAGAAAACATATATTTTTATATTACATTCGAGAACTAATTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGCAAAATTAGTTGCTCTTCTAATATCTGTAACAAATATTAGTTTTAAGTATGAGAACTTATTGAA</gDNA_template>
            <first_frame> W  N  S  L  Y  E  M  H  S  V  V  Y  K  Y  R  R  P  I  K  M  V  F  N  T  H  N  A  D  P  L  D  R  I  C  D  E  D  W  E  E  T  K  E  L  L  Q  F  L  R  L  F  Y  D  A  I  T  M  F  S  E  I  Y  Y  P  T  I  L  S  V  L  I  N  I  C  A  L  T  I  Q  L  C  K  *  *  I  N  L  E  L  Q  L  K  V  *  L  K  I  L  K  N  I  F  F  L  F  L  K  F  F  *  R  L  L  Y  F  I  L  L  K  I  T  R  C  A  W  S  Y  *  H  F  L  *  N  F  R  N  F  T  G  K  N  F  K  L  S  N  V  *  V  *  H  K  S  R  S  K  T  V  V  *  K  I  *  N  Y  R  K  F  S  R  R  S  W  S  N  F  *  C  *  D  *  F  V  T  S  N  F  N  L  Y  V  T  Y  S  W  S  *  F  Y  *  P  *  *  F  *  R  I  S  *  L  I  F  R  N  I  E  N  Q  R  W  Q  *  R  F  I  R  M  V  E  *  A  K  R  C  I  S  N  F  E  Q  N  G  S  *  C  S  S  Y  S  S  F  I  S  *  I  *  C  F  Q  C  G  K  V  S  N  *  *  S  *  T  F  I  G  G  R  Q  F  Q  N  N  C  F  I  *  R  L  V  Q  C  R  K  E  E  *  Q  F  A  K  V  K  *  K  T  S  K  L  D  Q  N  T  N  *  M  Q  *  *  *  I  R  G  P  R  I  S  S  K  F  A  N  T  G  G  Y  H  H  R  Y  D  A  T  I  K  I  K  F  *  R  R  K  H  I  F  L  Y  Y  I  R  E  L  I  E  T  E  P  F  L  E  G  G  C  A  K  L  V  A  L  L  I  S  V  T  N  I  S  F  K  Y  E  N  L  L   </first_frame>
            <second_frame>  G  I  L  F  M  K  C  I  R  L  F  T  N  I  E  D  P  *  K  W  F  L  I  L  I  M  Q  T  H  *  I  E  F  V  M  K  I  G  K  K  L  K  N  Y  Y  N  F  *  D  F  F  M  M  R  L  P  C  F  L  K  F  I  I  L  L  F  Y  P  Y  *  *  I  F  V  L  L  Q  F  N  C  V  N  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  F  *  K  I  F  F  S  Y  S  S  S  F  F  N  G  Y  F  T  S  S  F  L  K  L  Q  G  V  R  G  L  I  D  T  F  Y  E  T  L  E  I  L  P  E  K  I  S  N  C  Q  T  C  K  S  S  I  K  V  E  A  K  L  L  Y  E  K  Y  R  T  T  E  N  F  Q  G  E  V  G  Q  T  S  N  V  E  I  D  L  S  L  P  I  S  T  Y  M  *  R  I  L  G  L  N  S  I  N  R  D  S  F  E  E  Y  L  N  *  S  L  E  I  L  K  I  K  D  G  N  E  D  L  L  G  W  W  S  R  R  S  D  A  F  P  T  L  S  K  M  V  R  D  V  L  A  I  Q  A  S  S  V  E  Y  D  A  F  S  A  A  R  F  Q  I  D  D  H  R  H  S  L  A  E  D  S  F  K  T  T  V  L  F  R  D  *  S  N  A  E  R  R  N  N  N  L  P  K  L  S  K  K  Q  A  S  W  I  K  T  Q  I  E  C  S  D  D  E  L  E  A  Q  E  F  L  A  S  L  P  T  P  E  D  I  T  I  D  M  M  R  Q  L  K  L  N  F  K  G  E  N  I  Y  F  Y  I  T  F  E  N  *  L  K  Q  N  P  S  *  K  V  A  A  Q  N  *  L  L  F  *  Y  L  *  Q  I  L  V  L  S  M  R  T  Y  *  </second_frame>
            <third_frame>   E  F  S  L  *  N  A  F  G  C  L  Q  I  *  K  T  H  K  N  G  F  *  Y  S  *  C  R  P  I  R  *  N  L  *  *  R  L  G  R  N  *  R  T  I  T  I  F  K  T  F  L  *  C  D  Y  H  V  F  *  N  L  L  S  Y  Y  F  I  R  I  N  K  Y  L  C  S  Y  N  S  I  V  *  I  I  D  K  F  R  V  A  I  E  G  M  I  E  N  F  K  K  Y  F  F  P  I  P  Q  V  F  L  T  A  T  L  L  H  P  S  *  N  Y  K  V  C  V  V  L  L  T  L  F  M  K  L  *  K  F  Y  R  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  N  C  C  M  K  N  I  E  L  Q  K  I  F  K  E  K  L  V  K  L  L  M  L  R  L  I  C  H  F  Q  F  Q  L  I  C  D  V  F  L  V  L  I  L  L  T  V  I  V  L  K  N  I  L  I  N  L  *  K  Y  *  K  S  K  M  A  M  K  I  Y  *  D  G  G  V  G  E  A  M  H  F  Q  L  *  A  K  W  F  V  M  F  *  L  F  K  L  H  Q  L  N  M  M  L  S  V  R  Q  G  F  K  L  M  I  I  D  I  H  W  R  K  T  V  S  K  Q  L  F  Y  L  E  I  S  P  M  P  K  G  G  I  T  I  C  Q  S  *  V  K  N  K  Q  V  G  S  K  H  K  L  N  A  V  M  M  N  *  R  P  K  N  F  *  Q  V  C  Q  H  R  R  I  S  P  S  I  *  C  D  N  *  N  *  I  L  K  E  K  T  Y  I  F  I  L  H  S  R  T  N  *  N  R  T  L  P  R  R  W  L  R  K  I  S  C  S  S  N  I  C  N  K  Y  *  F  *  V  *  E  L  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94850" stop="94572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFFSYSSSFFNGYFTSSFLKLQGVRGLIDTFYETLEILPEKISNCQTCKSSIKVEAKLLYEKYRTTENFQGEVGQTSNVEIDLSLPISTYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95145" stop="94897"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNSLYEMHSVVYKYRRPIKMVFNTHNADPLDRICDEDWEETKELLQFLRLFYDAITMFSEIYYPTILSVLINICALTIQLCK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94514" stop="94287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLEILKIKDGNEDLLGWWSRRSDAFPTLSKMVRDVLAIQASSVEYDAFSAARFQIDDHRHSLAEDSFKTTVLFRD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94286" stop="94068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNAERRNNNLPKLSKKQASWIKTQIECSDDELEAQEFLASLPTPEDITIDMMRQLKLNFKGENIYFYITFEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="96202" PGL_stop="95392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96202" e_stop="95392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="96202" e_stop="95392" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96202" stop="95555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96202" stop="95609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96201" stop="95963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96176" stop="95392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCAAAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTCTATTTTGTGGCAATTTGTGACTTTCGATAAAGAAAATAGTGTTGGTATTTGTAATAAGTGTAAGCAACCTTTTAAACACAACAAGGTGGGGGTCAAGGTGGAACGGGAGGATTAAACAGACATTTGTTATCTTGTGTGACAATTCAATACAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAAAAATTAATGAATTTAATATTACCGGCAATGCATCGATAGGGGCTTATAACATGGTTCAAGAAACATTAGATCCTTTTAACCCCGCTGGTCCAATAACACAACGTAAATATAATAAGGACTTAGATCGGGAAAATTTAGCTAAAATGGTTTTTGTTTGTGGTTTTCCTTATAGTTTTTCTTCAAATCCCGATTTTATTGAATATATTCAACAAACTTATAATCCGGATTACAGAGGCTTTTTAAGAAATACTGTTAAATCTGATGTTTTTGATTTTCACGGTAAAAATTATCAATTTCATCGTTGTATATTTAGCAAATTAGATAGTAGAGTGTCTATAACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATTATTTAACGATTACTGCACATTGGATTGATCATAATTGGAATTTGTAAAAAAGAAATATAAGTTATAAACTATGTATAGAGAAAAAAACTAGTGCATATTTAGCTTCAAATATTTTAAGTGTTTTAGATTATTACATGATTATATATAAAATAATATCTGTCGCATTAGATAATGCATCTACTAATACAAACGCTGC</gDNA_template>
            <first_frame> L  S  K  G  R  R  *  S  I  N  A  L  K  L  L  F  C  G  N  L  *  L  S  I  K  K  I  V  L  V  F  V  I  S  V  S  N  L  L  N  T  T  R  W  G  S  R  W  N  G  R  I  K  Q  T  F  V  I  L  C  D  N  S  I  Q  R  S  *  S  I  S  Q  *  K  K  G  N  F  N  *  K  L  M  N  L  I  L  P  A  M  H  R  *  G  L  I  T  W  F  K  K  H  *  I  L  L  T  P  L  V  Q  *  H  N  V  N  I  I  R  T  *  I  G  K  I  *  L  K  W  F  L  F  V  V  F  L  I  V  F  L  Q  I  P  I  L  L  N  I  F  N  K  L  I  I  R  I  T  E  A  F  *  E  I  L  L  N  L  M  F  L  I  F  T  V  K  I  I  N  F  I  V  V  Y  L  A  N  *  I  V  E  C  L  *  L  R  T  W  V  V  V  L  M  E  M  I  I  *  R  L  L  H  I  G  L  I  I  I  G  I  C  K  K  E  I  *  V  I  N  Y  V  *  R  K  K  L  V  H  I  *  L  Q  I  F  *  V  F  *  I  I  T  *  L  Y  I  K  *  Y  L  S  H  *  I  M  H  L  L  I  Q  T  L  </first_frame>
            <second_frame>  S  Q  K  G  E  G  E  V  S  T  P  *  N  F  Y  F  V  A  I  C  D  F  R  *  R  K  *  C  W  Y  L  *  *  V  *  A  T  F  *  T  Q  Q  G  G  G  Q  G  G  T  G  G  L  N  R  H  L  L  S  C  V  T  I  Q  Y  K  E  A  K  A  L  A  N  R  K  K  G  I  S  I  K  N  *  *  I  *  Y  Y  R  Q  C  I  D  R  G  L  *  H  G  S  R  N  I  R  S  F  *  P  R  W  S  N  N  T  T  *  I  *  *  G  L  R  S  G  K  F  S  *  N  G  F  C  L  W  F  S  L  *  F  F  F  K  S  R  F  Y  *  I  Y  S  T  N  L  *  S  G  L  Q  R  L  F  K  K  Y  C  *  I  *  C  F  *  F  S  R  *  K  L  S  I  S  S  L  Y  I  *  Q  I  R  *  *  S  V  Y  N  F  G  H  G  S  *  C  *  W  K  *  L  F  N  D  Y  C  T  L  D  *  S  *  L  E  F  V  K  K  K  Y  K  L  *  T  M  Y  R  E  K  N  *  C  I  F  S  F  K  Y  F  K  C  F  R  L  L  H  D  Y  I  *  N  N  I  C  R  I  R  *  C  I  Y  *  Y  K  R  C </second_frame>
            <third_frame>   L  K  R  E  K  V  K  Y  Q  R  P  K  T  S  I  L  W  Q  F  V  T  F  D  K  E  N  S  V  G  I  C  N  K  C  K  Q  P  F  K  H  N  K  V  G  V  K  V  E  R  E  D  *  T  D  I  C  Y  L  V  *  Q  F  N  T  K  K  L  K  H  *  P  I  E  K  R  E  F  Q  L  K  I  N  E  F  N  I  T  G  N  A  S  I  G  A  Y  N  M  V  Q  E  T  L  D  P  F  N  P  A  G  P  I  T  Q  R  K  Y  N  K  D  L  D  R  E  N  L  A  K  M  V  F  V  C  G  F  P  Y  S  F  S  S  N  P  D  F  I  E  Y  I  Q  Q  T  Y  N  P  D  Y  R  G  F  L  R  N  T  V  K  S  D  V  F  D  F  H  G  K  N  Y  Q  F  H  R  C  I  F  S  K  L  D  S  R  V  S  I  T  S  D  M  G  R  S  V  N  G  N  D  Y  L  T  I  T  A  H  W  I  D  H  N  W  N  L  *  K  R  N  I  S  Y  K  L  C  I  E  K  K  T  S  A  Y  L  A  S  N  I  L  S  V  L  D  Y  Y  M  I  I  Y  K  I  I  S  V  A  L  D  N  A  S  T  N  T  N  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95990" stop="95541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIEKREFQLKINEFNITGNASIGAYNMVQETLDPFNPAGPITQRKYNKDLDRENLAKMVFVCGFPYSFSSNPDFIEYIQQTYNPDYRGFLRNTVKSDVFDFHGKNYQFHRCIFSKLDSRVSITSDMGRSVNGNDYLTITAHWIDHNWNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="108172" PGL_stop="107896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108172" e_stop="107896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="108172" e_stop="107896" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108172" stop="107896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGCTTATTATTCATCTGAGAACCAACTAGCTGATATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGACAAAGAATTGGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTAACATTTTTCAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGGCTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> F  Y  L  R  S  P  T  I  *  *  S  V  A  C  L  L  F  I  *  E  P  T  S  *  Y  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  T  K  N  W  C  L  P  Q  K  C  Q  G  G  V  L  D  N  *  H  F  S  A  Y  Y  Y  F  Y  C  F  L  L  I  S  I  *  C  F  L  F  S  S  *  A  *  S  T  L  V  A  Q  L  S  E  </first_frame>
            <second_frame>  F  I  *  E  V  Q  Q  S  N  E  V  L  L  A  Y  Y  S  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  L  R  Q  R  I  G  V  C  H  K  N  A  K  E  E  C  *  T  I  N  I  F  Q  L  I  I  I  F  T  V  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  Q  L  *  L  L  N  F  L  K </second_frame>
            <third_frame>   L  S  E  K  S  N  N  L  M  K  C  C  L  L  I  I  H  L  R  T  N  *  L  I  F  S  P  S  H  C  Q  R  K  G  L  K  I  *  D  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  T  F  F  S  L  L  L  F  L  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  G  L  V  N  F  S  C  S  T  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155E05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 204 chains have been computed
$ 
$ memory statistics:
$ 83304 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 2136 bytes was the average size of a spliced alignment
$ 10864 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2172 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 255 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:37:13
-->
