<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:37:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575557" ref_strand="+" ref_description="SGN-U575557 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157350727|emb|CAO40818.1| (e_value=6e-132) unnamed; (*ATH) AT3G08010.1 (e_value=7e-127) | Symbol: None | expressed protein | chr3:2555988-2557511 FORWARD | Aliases: F17A17.35; ">
      <seq>gatttcttctagtctcccttatcttttaaataaaaaaaataaaaaataaaaataaattagtctcccttatcttttaaataaaaaaaataaaaaataaaaataaataatttgggtttgatggcttgtctaagctgcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggaattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttatcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggcatcccattacccgataaaattagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggtgcttatcacttgtcctttggcttgaagaccgctatgaaactgtttatactcgccatcctggttttcaaaaaggagccaagccacttcttgcacttgacaatccttttccaatggaacttcctgagaatctgtatggagaaaagtgggcttttgtccagttgcccgtttcagctgttcgtaaggaagtatctaacctggagactaggttggtttttggctcaagtttggacttggatcttctggggatcgaaattgaggacaacacattgattcctggactagcagttgcatcctcacgtgcgaaacccttagctgcttggatgaatggcttggaagtctgttcgattgaagctgatgttgacaaggcttcgttaattttgtcggtgggtatctctacccgctacatttatgcgacttacaagaaaaatcctgcatccacaagtgaagctgaagcttgggaagcagcaaagaaagcctgtggaggtttgcacttccttgctattcaaaatgacctgaattcggatgattgtgttggattctggcttttgttaaacctgccacctcctcctgtataacttgataaatagagtacaaggttttcctttgtacattctcttttatttgctcatttccagaatgtagagaggcatcatagcaattagactgtatttgagctgagaattttcgtaagatatagctgtttcagagaaatggcaacgttttgctcgctttgcatttacttcaatgaaaatgattgtatcagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31060" stop="35636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31360" g_stop="31927" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="639" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32689" g_stop="32860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="811" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33072" g_stop="33215" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="955" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34886" g_stop="35336" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1406" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-U575557" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1405</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31360" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32689" e_stop="32860"/>
          <exon e_start="33072" e_stop="33215"/>
          <exon e_start="34886" e_stop="35336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTTCTAGTCTCCCTTATCTTTTAAATAAAAAAAATAAAAAATAAAAAAAAATTAGTCTCCCTTATCTTTTAAAT-AAAAAAATAAAAAATAAAAATAAATAATTTGGGTTTGATGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCTGGTAAATTCTCCCCCCAAGTCAAGCTTTAGTTTGATATACAATGCATTGCTTCATTTCCATATTTTTATATGATCTGAAAATGAATAGCTCATTTATGTGTATACACAAGACTTCAGTAATGCCTAAATGATCTTTGATCCATGACATAACAAAAGGTCTTTTCTAATATAAAAATAATAACCAAGATACTGCAATATTTTGCTATTTTATGCACAATTGTTTAAAAACAGATTTCTTGTATGCTGCTATATTTCAGTGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAGGTACATTTAATTCTAACACTCTGGAACAACTAATCTAGTTTAGCTCTTGATGATTTGTAAGAAGAATAGAATTCCTATTCTGTACTATAACTTGCCATATTTCTCATTTTGAGAAGATAAACTTGGATTAGAACCGATATCAAGTTGGACATGAATTTCTAATATTATTGTACCTTTAAAATTATGGACTTACAATTTATCTTGTTTGTAGCTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTGGTATCAGAGCTGTACTATCTTTTTTTTTCTTTTTAACTTTATTGTATTAATGGATTATGACAATTCATGAGCATATGGTGTTCCTAGATTGACAATTTTCCTTCATACTTCTTTTATAACTCTCATGTGCTCTATAAGTATAATTTGACCTACTTTCCTTTTTCTTCCCCCTTTTTTCGAGTAAATTTAATCTACTTAATTTTATAACATCAAAATCATTTCTTGCTAGTTCATATGGGCATTGAACCGTTTCTAAGGTGCAACCATTTGTCATGACCAAAATGCTAGTCAATTAGTATTTGCCGAGATGGGGGTTGTGGGCCAAAACACCGAGACATTAGGTTGAACCCTCATGAAGCAAGACTAATTAGACTACTTATACCATTCTCAAATGTGATTTTTTTTTTATAAAAATATTCATTATTTTTTTCAAATGGTCTGATGATGTATTTCTCGGCAGAAGTGGTAATTTGACTCTGATTGCTCAATTAAAGATTAAAGTTACATATATTATATAGACAAGTCTATGTTGGAGAGCTAGAGTGGAGAAGCATCGGGTGATCCAAAATTATCCTATTATTTTGTTAATTGAGATTTCGATATAGTAGGATCTCTTTATTTCTTCACAACAGATTCTCACATCATTTTCTTGAAATGATATTATCTCACCGTGGGTTGTCTATTCTCTATTGAAAACTGTTATTGCATTTGTTCAGTATTGTTGAAAATTCACTTTTCCTGGAGTTGTGGCTTCTTGTAGCAAAGATGGTTCTGCACATATATTGATGTGGTAACTGTCACCATTGATGTAAACAGAGCTGCGCTTCAAGTACTGCATGTTATTATCTACTTGTCAGATGATGGCAACATTCTTTCACCTTTGAGGATAATAAGTCTTCAATTTACCAAAAAATGTGATTGAAGCGTTTGGTGTCCGTTAATTGGGGCTTGAAAAATTGATCAAATTTCATTCATAAACACGTCTGTTGTACTCAAAGCTTTTCCATGTTTTCTAAGGACAGAGTGTCTGTCCACTCATTTCGATTTGAAATCTATTTCCTGCTCTATTTGGTGGGCACTTCCAAGTATCAAACAATTGGTCTTTGTCCAAATTTGCTCGATACACTTTCCTTCTTTATGCATACCAAAACATTTTATTCCTGACCTAATATGAAAATATCTTGTTTCAAGCTAAATAAATTAAAACTATTTCACAGTGATTTTACAAATCTCGTCTCTTCTATTCTTTTGAATGTATCTGGTATTAATTTCTGTATATCAATCCATTCAAAATCTTTTATTTGCTTTTCAAGTTTACTCAGATGAGCTGGTCTAAATTGGCAGTGTGATTGGACAAATGATATGATTATCTGCGTGAACTGTTAGAAACTTCTGACATCAAACTATAGCAGCTGAAAACATATCTCCCTATTTCCGAATGTCAAGGGGGATATGTAGGTCATAGTTAAAGTCCGTTCATTGAGGAATGTTGGTTTAAGGTAGAGTTTGGTCAACCCATCTGTCTGCTCGAGCTCCTATAGCCAGCAACATCTTTGGATACTTCTAGCCTTTTAATGAGACCCAAAGAATGTGTTGTGTAGAATTTTTTTTTAAAATTTTTTTTTACAATTTGTGTTTCACCATCCTCTTTTGATTGTGGACTACTACAGCTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACT</genome_strand>
        <mrna_strand>GATTTCTTCTAGTCTCCCTTATCTTTTAAATAAAAAAAATAAAAAATAAAAATAAATTAGTCTCCCTTATCTTTTAAATAAAAAAAATAAAAAATAAAAATAAATAATTTGGGTTTGATGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGCATCCCATTACCCGATAAAATTAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG...................................................................................................................................................................................................................CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596695" ref_strand="+" ref_description="SGN-U596695 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118489335|gb|ABK96472.1| (e_value=3e-50) unknown; (*ATH) AT3G08010.1 (e_value=2e-50) | Symbol: None | expressed protein | chr3:2555988-2557511 FORWARD | Aliases: F17A17.35; ">
      <seq>gcagtctccctttacttcaaactcataaagcgatttccaatttcagtgtattcccctttaaatcagttgcaatatgtttaccaaaatgtaaggtgaagtctgttcatattccatcagtttctgaagcttcttctatttcatctactaatttggaagaagaggaggacgacgatcccactgctgaacttgtttatcttgaccctgaaattgatcctgagagcttatctgagtgggcattggatttttgttcaagaccaattcttgatattagagggaaaaaattatgggagcttcttgtttgtgatgattccctctctcttcagtataccaaatattttcctaataatcttttcaatagtatcactttgaaagatgctttactatctatatctaatgacttaggcatcccattacccgataaaattagattcttcaggtcacaaatgcaaactattattacaagagcttgcaacgaacttgccatcaaacctgttcctagcaaacggaggaaattaaaaagcagatactaaataatcacaaaaaaagttagttgctgctttggttctggcgtgtagatgctgctagtcacgaattcaaatctttctctacctgcaattttatgttaaaagaaagtgagcacccacgancctcaaatgntgnaganaagttgtgtttgatttttccatccctaagttcatcctacctattttnntggtaaagcanatatagcattcattcaaaattancnnnccnttcttncng</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="31192" stop="32715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31492" g_stop="31927" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31999" g_stop="32068" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="506" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32069" i_stop="32174" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.158" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32175" g_stop="32431" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="762" r_length="256" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-U596695" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31492" e_stop="31927"/>
          <exon e_start="31999" e_stop="32068"/>
          <exon e_start="32175" e_stop="32431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAGGTACTCTTAACTTACATCCTCTCAACTGTTTTACATTTTCAATTCTCTCATCAATTGTTTTCCATTTTTAGGTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGGGTATTTTCACCAATTTTATTATCCCTATATATACAACATTTCAATCCAATTTTCTAGCACGGATCTATATTTACCGTTCCCCCGATAATTTTTTGTATATCTATAGAGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCT</genome_strand>
        <mrna_strand>GCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGCATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTTTCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGCATCCCATTACCCGATAAAATTAGATTCTTCAG.......................................................................GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG..........................................................................................................AGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGANCCTCAAATGNTGNAGANAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTNNTGGTAAAGCANATATAGCATTCATTCAAAATTANC-NNNCCNTTCTTNCNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582482" ref_strand="+" ref_description="SGN-U582482 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|113205226|gb|ABI34306.1| (e_value=3e-28) Polyprotein,; ">
      <seq>ttattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcagtgcggcaaggtttcaaatcggtgatcatagacattcattggccgaagacagtttggaaacaacagttttatttagagactggtccaatgtcggaaggaggaataacaatttgccaaagttaagtaaaaaacaagcaagttggatcaaaacactaattgaatgcagtgattatgaattagagacacaagaatttctagcaagtttgctaacaccggaggatatcaccatcgatatgatgcgacaattagataaattttaaaggagaaaacaaatatttttagattacattcgagaactaattgaaacagaacccttctagaaggtggctgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="95263" stop="93735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94963" g_stop="94036" g_length="928"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="936" r_length="936" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-U582482" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94963" e_stop="94036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATCCTACTATTTTATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTGTGT-AA-AT-----AATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTA-AAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTG-A--ATATGATGCTTTCAGTGCGGCAAGGTTTCAAATTGATGATCATAGACATTCATTGGCGGAAGACAGTTTCAAAACAACTGTTTTATTTAGAGATTAGTCCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGATGATGAATTAGAGGCCCAAGAATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGCGACAATTAAAATTAAATTTTAAAGGAGAAAACATATATTTTTATATTACATTCGAGAACTAATTGAAACAGAACCCTTCCTAGAAGGTGGCTGC</genome_strand>
        <mrna_strand>TTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAGTGCGGCAAGGTTTCAAATCGGTGATCATAGACATTCATTGGCCGAAGACAGTTTGGAAACAACAGTTTTATTTAGAGACTGGTCCAATGTCGGAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACTAATTGAATGCAGTGATTATGAATTAGAGACACAAGAATTTCTAGCAAGTTTGCTAACACCGGAGGATATCACCATCGATATGATGCGACAATT-AGA-TAAATTTTAAAGGAGAAAACAAATATTTTTAGATTACATTCGAGAACTAATTGAAACAGAACCCTT-CTAGAAGGTGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604259" ref_strand="+" ref_description="SGN-U604259 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205352|gb|AAT38797.2| (e_value=7e-19) Polyprotein,; ">
      <seq>attttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="-" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="108473" stop="107596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108173" g_stop="107896" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="-" ref_id="SGN-U604259" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108173" e_stop="107896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATCTGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGCTTATTATTCATCTGAGAACCAACTAGCTGATATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGACAAAGAATTGGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTAACA-TTTTTCAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGGCTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>ATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586393" ref_strand="+" ref_description="SGN-U586393 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtataaatctaggatgtcgttaatagatcatataatgtttgagcaaacacgggaaagtccaacaagaaataaataattgatgagtattattgacgagaaaaataaaggactacaaatttgaagaaaccaaatgggcagtagcaatgtgtgatacatatgatacatgattcatcattgaaataatatcattgatgcttgaatttcctctaatgttcgtcccttcgtctcacggacgcgtgggttcgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155E05-W6Lay/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155E05.3" temp_strand="+" temp_description="C02HBa0155E05.3  AC215399.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155E05 sequenced_by:kribb upload_account_name:korea">
        <position start="156347" stop="157185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156647" g_stop="156877" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155E05.3" gen_strand="+" ref_id="SGN-U586393" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155E05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156647" e_stop="156877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATAAATCTAGGATGTGTTTAATAGATCATATAATGTTTGAGTAAACACGGGAAAGTCCAACAAGAAATAAATAATTGATGAGTATTATTGACGAGAAAAATAAAGGACTACAAATTTGAAGAAACCAAATGGGCAGTAGCAATGTGTGATACATATGATACATGATTCATCATTGTAATAATATCATTGATGCTTGAATTTCCTCTAATGTTCGTCCCTTCGTCTCAG</genome_strand>
        <mrna_strand>GGTATAAATCTAGGATGTCGTTAATAGATCATATAATGTTTGAGCAAACACGGGAAAGTCCAACAAGAAATAAATAATTGATGAGTATTATTGACGAGAAAAATAAAGGACTACAAATTTGAAGAAACCAAATGGGCAGTAGCAATGTGTGATACATATGATACATGATTCATCATTGAAATAATATCATTGATGCTTGAATTTCCTCTAATGTTCGTCCCTTCGTCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31360" PGL_stop="35336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31360" e_stop="31927"/>
            <exon e_start="31999" e_stop="32068"/>
            <exon e_start="32689" e_stop="32860"/>
            <exon e_start="33072" e_stop="33215"/>
            <exon e_start="34886" e_stop="35336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="31360" e_stop="31927" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31999" e_stop="32068" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32069" i_stop="32688" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32689" e_stop="32860" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="32861" i_stop="33071" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33072" e_stop="33215" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33216" i_stop="34885" i_length="1670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34886" e_stop="35336" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31360" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32689" stop="32860"/>
              <exon start="33072" stop="33215"/>
              <exon start="34886" stop="35336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTCTTCTAGTCTCCCTTATCTTTTAAATAAAAAAAATAAAAAATAAAAAAAAATTAGTCTCCCTTATCTTTTAAATAAAAAAATAAAAAATAAAAATAAATAATTTGGGTTTGATGGCTTGTCTAAGCTGCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG : GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG : TGCTTATCACTTGTCCTTTGGCTTGAAGACCGCTATGAAACTGTTTATACTCGCCATCCTGGTTTTCAAAAAGGAGCCAAGCCACTTCTTGCACTTGACAATCCTTTTCCAATGGAACTTCCTGAGAATCTGTATGGAGAAAAGTGGGCTTTTGTCCAGTTGCCCGTTTCAG : CTGTTCGTAAGGAAGTATCTAACCTGGAGACTAGGTTGGTTTTTGGCTCAAGTTTGGACTTGGATCTTCTGGGGATCGAAATTGAGGACAACACATTGATTCCTGGACTAGCAGTTGCATCCTCACGTGCGAAACCCTTAGCTG : CTTGGATGAATGGCTTGGAAGTCTGTTCGATTGAAGCTGATGTTGACAAGGCTTCGTTAATTTTGTCGGTGGGTATCTCTACCCGCTACATTTATGCGACTTACAAGAAAAATCCTGCATCCACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAAGCCTGTGGAGGTTTGCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTGCCACCTCCTCCTGTATAACTTGATAAATAGAGTACAAGGTTTTCCTTTGTACATTCTCTTTTATTTGCTCATTTCCAGAATGTAGAGAGGCATCATAGCAATTAGACTGTATTTGAGCTGAGAATTTTCGTAAGATATAGCTGTTTCAGAGAAATGGCAACGTTTTGCTCGCTTTGCATTTACTTCAATGAAAATGATTGTATCAGACT</gDNA_template>
            <first_frame> D  F  F  *  S  P  L  S  F  K  *  K  K  *  K  I  K  K  N  *  S  P  L  S  F  K  *  K  N  K  K  *  K  *  I  I  W  V  *  W  L  V  *  A  A  V  S  L  Y  F  K  L  I  K  R  F  P  I  S  V  Y  S  P  L  N  Q  L  Q  Y  V  Y  Q  N  V  R  *  S  L  F  I  F  H  Q  F  L  K  L  L  L  F  H  L  L  I  W  K  K  R  R  T  T  I  P  L  L  N  L  F  I  L  T  L  K  L  I  L  R  A  Y  L  S  G  N  W  I  F  V  Q  D  Q  F  L  I  L  E  G  K  N  Y  G  S  F  L  F  V  M  I  P  S  L  F  S  I  P  N  I  F  L  I  I  L  S  I  V  S  L  *  K  M  L  Y  Y  L  Y  L  M  T  *  V  S  H  Y  P  I  K  S  D  S  S   : G  H  K  C  K  L  L  L  Q  E  L  A  T  N  L  P  S  N  L  F  L  A  N  G :   A  Y  H  L  S  F  G  L  K  T  A  M  K  L  F  I  L  A  I  L  V  F  K  K  E  P  S  H  F  L  H  L  T  I  L  F  Q  W  N  F  L  R  I  C  M  E  K  S  G  L  L  S  S  C  P  F  Q  :  L  F  V  R  K  Y  L  T  W  R  L  G  W  F  L  A  Q  V  W  T  W  I  F  W  G  S  K  L  R  T  T  H  *  F  L  D  *  Q  L  H  P  H  V  R  N  P  *  L  :  L  G  *  M  A  W  K  S  V  R  L  K  L  M  L  T  R  L  R  *  F  C  R  W  V  S  L  P  A  T  F  M  R  L  T  R  K  I  L  H  P  Q  V  K  L  K  L  G  K  Q  Q  R  K  P  V  E  V  C  T  S  L  L  F  K  M  T  *  I  R  M  I  V  L  D  S  G  F  C  *  T  C  H  L  L  L  Y  N  L  I  N  R  V  Q  G  F  P  L  Y  I  L  F  Y  L  L  I  S  R  M  *  R  G  I  I  A  I  R  L  Y  L  S  *  E  F  S  *  D  I  A  V  S  E  K  W  Q  R  F  A  R  F  A  F  T  S  M  K  M  I  V  S  D  </first_frame>
            <second_frame>  I  S  S  S  L  P  Y  L  L  N  K  K  N  K  K  *  K  K  I  S  L  P  Y  L  L  N  K  K  I  K  N  K  N  K  *  F  G  F  D  G  L  S  K  L  Q  S  P  F  T  S  N  S  *  S  D  F  Q  F  Q  C  I  P  L  *  I  S  C  N  M  F  T  K  M  *  G  E  V  C  S  Y  S  I  S  F  *  S  F  F  Y  F  I  Y  *  F  G  R  R  G  G  R  R  S  H  C  *  T  C  L  S  *  P  *  N  *  S  *  E  L  I  *  V  G  I  G  F  L  F  K  T  N  S  *  Y  *  R  E  K  I  M  G  A  S  C  L  *  *  F  P  L  S  S  V  Y  Q  I  F  S  *  *  S  Y  Q  *  Y  H  F  E  R  C  F  T  I  Y  I  *  *  L  R  Y  P  I  T  R  *  N  Q  I  L  Q  :  V  T  N  A  N  Y  Y  Y  K  S  L  Q  R  T  C  H  Q  T  C  S  *  Q  T   : V  L  I  T  C  P  L  A  *  R  P  L  *  N  C  L  Y  S  P  S  W  F  S  K  R  S  Q  A  T  S  C  T  *  Q  S  F  S  N  G  T  S  *  E  S  V  W  R  K  V  G  F  C  P  V  A  R  F  S :   C  S  *  G  S  I  *  P  G  D  *  V  G  F  W  L  K  F  G  L  G  S  S  G  D  R  N  *  G  Q  H  I  D  S  W  T  S  S  C  I  L  T  C  E  T  L  S  C :   L  D  E  W  L  G  S  L  F  D  *  S  *  C  *  Q  G  F  V  N  F  V  G  G  Y  L  Y  P  L  H  L  C  D  L  Q  E  K  S  C  I  H  K  *  S  *  S  L  G  S  S  K  E  S  L  W  R  F  A  L  P  C  Y  S  K  *  P  E  F  G  *  L  C  W  I  L  A  F  V  K  P  A  T  S  S  C  I  T  *  *  I  E  Y  K  V  F  L  C  T  F  S  F  I  C  S  F  P  E  C  R  E  A  S  *  Q  L  D  C  I  *  A  E  N  F  R  K  I  *  L  F  Q  R  N  G  N  V  L  L  A  L  H  L  L  Q  *  K  *  L  Y  Q  T </second_frame>
            <third_frame>   F  L  L  V  S  L  I  F  *  I  K  K  I  K  N  K  K  K  L  V  S  L  I  F  *  I  K  K  *  K  I  K  I  N  N  L  G  L  M  A  C  L  S  C  S  L  P  L  L  Q  T  H  K  A  I  S  N  F  S  V  F  P  F  K  S  V  A  I  C  L  P  K  C  K  V  K  S  V  H  I  P  S  V  S  E  A  S  S  I  S  S  T  N  L  E  E  E  E  D  D  D  P  T  A  E  L  V  Y  L  D  P  E  I  D  P  E  S  L  S  E  W  E  L  D  F  C  S  R  P  I  L  D  I  R  G  K  K  L  W  E  L  L  V  C  D  D  S  L  S  L  Q  Y  T  K  Y  F  P  N  N  L  I  N  S  I  T  L  K  D  A  L  L  S  I  S  N  D  L  G  I  P  L  P  D  K  I  R  F  F  R :   S  Q  M  Q  T  I  I  T  R  A  C  N  E  L  A  I  K  P  V  P  S  K  R  :  C  L  S  L  V  L  W  L  E  D  R  Y  E  T  V  Y  T  R  H  P  G  F  Q  K  G  A  K  P  L  L  A  L  D  N  P  F  P  M  E  L  P  E  N  L  Y  G  E  K  W  A  F  V  Q  L  P  V  S   : A  V  R  K  E  V  S  N  L  E  T  R  L  V  F  G  S  S  L  D  L  D  L  L  G  I  E  I  E  D  N  T  L  I  P  G  L  A  V  A  S  S  R  A  K  P  L  A   : A  W  M  N  G  L  E  V  C  S  I  E  A  D  V  D  K  A  S  L  I  L  S  V  G  I  S  T  R  Y  I  Y  A  T  Y  K  K  N  P  A  S  T  S  E  A  E  A  W  E  A  A  K  K  A  C  G  G  L  H  F  L  A  I  Q  N  D  L  N  S  D  D  C  V  G  F  W  L  L  L  N  L  P  P  P  P  V  *  L  D  K  *  S  T  R  F  S  F  V  H  S  L  L  F  A  H  F  Q  N  V  E  R  H  H  S  N  *  T  V  F  E  L  R  I  F  V  R  Y  S  C  F  R  E  M  A  T  F  C  S  L  C  I  Y  F  N  E  N  D  C  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31449" stop="31927"/>
                    <exon start="31999" stop="32068"/>
                    <exon start="32689" stop="32860"/>
                    <exon start="33072" stop="33215"/>
                    <exon start="34886" stop="35145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKINNLGLMACLSCSLPLLQTHKAISNFSVFPFKSVAICLPKCKVKSVHIPSVSEASSISSTNLEEEEDDDPTAELVYLDPEIDPESLSEWELDFCSRPILDIRGKKLWELLVCDDSLSLQYTKYFPNNLINSITLKDALLSISNDLGIPLPDKIRFFRSQMQTIITRACNELAIKPVPSKRCLSLVLWLEDRYETVYTRHPGFQKGAKPLLALDNPFPMELPENLYGEKWAFVQLPVSAVRKEVSNLETRLVFGSSLDLDLLGIEIEDNTLIPGLAVASSRAKPLAAWMNGLEVCSIEADVDKASLILSVGISTRYIYATYKKNPASTSEAEAWEAAKKACGGLHFLAIQNDLNSDDCVGFWLLLNLPPPPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31492" e_stop="31927"/>
            <exon e_start="31999" e_stop="32068"/>
            <exon e_start="32175" e_stop="32431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.158" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="31492" e_stop="31927" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31928" i_stop="31998" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31999" e_stop="32068" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.158">
            <gDNA_intron_boundary i_start="32069" i_stop="32174" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="32175" e_stop="32431" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31492" stop="31927"/>
              <exon start="31999" stop="32068"/>
              <exon start="32175" stop="32431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTCTCCCTTTACTTCAAACTCATAAAGCGATTTCCAATTTCAGTGTATTCCCCTTTAAATCAGTTGCAATATGTTTACCAAAATGTAAGGTGAAGTCTGTTCATATTCCATCAGTTTCTGAAGCTTCTTCTATTTCATCTACTAATTTGGAAGAAGAGGAGGACGACGATCCCACTGCTGAACTTGTTTATCTTGACCCTGAAATTGATCCTGAGAGCTTATCTGAGTGGGAATTGGATTTTTGTTCAAGACCAATTCTTGATATTAGAGGGAAAAAATTATGGGAGCTTCTTGTTTGTGATGATTCCCTCTCTCTTCAGTATACCAAATATTTTCCTAATAATCTTATCAATAGTATCACTTTGAAAGATGCTTTACTATCTATATCTAATGACTTAGGTATCCCATTACCCGATAAAATCAGATTCTTCAG : GTCACAAATGCAAACTATTATTACAAGAGCTTGCAACGAACTTGCCATCAAACCTGTTCCTAGCAAACGG : AGGAAATTAAAAAGCAGATACTAAATAATCACAAAAAAAGTTAGTTGCTGCTTTGGTTCTGGCGTGTAGATGCTGCTAGTCACGAATTCAAATCTTTCTCTACCTGCAATTTTATGTTAAAAGAAAGTGAGCACCCACGACCCTCAAATGTTGGAGACAAGTTGTGTTTGATTTTTCCATCCCTAAGTTCATCCTACCTATTTTGCTGGTAAAGCACATATAGCATTCATTCAAAATTAGCTCTCCCTTTCTTTCCT</gDNA_template>
            <first_frame> A  V  S  L  Y  F  K  L  I  K  R  F  P  I  S  V  Y  S  P  L  N  Q  L  Q  Y  V  Y  Q  N  V  R  *  S  L  F  I  F  H  Q  F  L  K  L  L  L  F  H  L  L  I  W  K  K  R  R  T  T  I  P  L  L  N  L  F  I  L  T  L  K  L  I  L  R  A  Y  L  S  G  N  W  I  F  V  Q  D  Q  F  L  I  L  E  G  K  N  Y  G  S  F  L  F  V  M  I  P  S  L  F  S  I  P  N  I  F  L  I  I  L  S  I  V  S  L  *  K  M  L  Y  Y  L  Y  L  M  T  *  V  S  H  Y  P  I  K  S  D  S  S   : G  H  K  C  K  L  L  L  Q  E  L  A  T  N  L  P  S  N  L  F  L  A  N  G :   G  N  *  K  A  D  T  K  *  S  Q  K  K  L  V  A  A  L  V  L  A  C  R  C  C  *  S  R  I  Q  I  F  L  Y  L  Q  F  Y  V  K  R  K  *  A  P  T  T  L  K  C  W  R  Q  V  V  F  D  F  S  I  P  K  F  I  L  P  I  L  L  V  K  H  I  *  H  S  F  K  I  S  S  P  F  L  S  </first_frame>
            <second_frame>  Q  S  P  F  T  S  N  S  *  S  D  F  Q  F  Q  C  I  P  L  *  I  S  C  N  M  F  T  K  M  *  G  E  V  C  S  Y  S  I  S  F  *  S  F  F  Y  F  I  Y  *  F  G  R  R  G  G  R  R  S  H  C  *  T  C  L  S  *  P  *  N  *  S  *  E  L  I  *  V  G  I  G  F  L  F  K  T  N  S  *  Y  *  R  E  K  I  M  G  A  S  C  L  *  *  F  P  L  S  S  V  Y  Q  I  F  S  *  *  S  Y  Q  *  Y  H  F  E  R  C  F  T  I  Y  I  *  *  L  R  Y  P  I  T  R  *  N  Q  I  L  Q  :  V  T  N  A  N  Y  Y  Y  K  S  L  Q  R  T  C  H  Q  T  C  S  *  Q  T   : E  E  I  K  K  Q  I  L  N  N  H  K  K  S  *  L  L  L  W  F  W  R  V  D  A  A  S  H  E  F  K  S  F  S  T  C  N  F  M  L  K  E  S  E  H  P  R  P  S  N  V  G  D  K  L  C  L  I  F  P  S  L  S  S  S  Y  L  F  C  W  *  S  T  Y  S  I  H  S  K  L  A  L  P  F  F  P </second_frame>
            <third_frame>   S  L  P  L  L  Q  T  H  K  A  I  S  N  F  S  V  F  P  F  K  S  V  A  I  C  L  P  K  C  K  V  K  S  V  H  I  P  S  V  S  E  A  S  S  I  S  S  T  N  L  E  E  E  E  D  D  D  P  T  A  E  L  V  Y  L  D  P  E  I  D  P  E  S  L  S  E  W  E  L  D  F  C  S  R  P  I  L  D  I  R  G  K  K  L  W  E  L  L  V  C  D  D  S  L  S  L  Q  Y  T  K  Y  F  P  N  N  L  I  N  S  I  T  L  K  D  A  L  L  S  I  S  N  D  L  G  I  P  L  P  D  K  I  R  F  F  R :   S  Q  M  Q  T  I  I  T  R  A  C  N  E  L  A  I  K  P  V  P  S  K  R  :  R  K  L  K  S  R  Y  *  I  I  T  K  K  V  S  C  C  F  G  S  G  V  *  M  L  L  V  T  N  S  N  L  S  L  P  A  I  L  C  *  K  K  V  S  T  H  D  P  Q  M  L  E  T  S  C  V  *  F  F  H  P  *  V  H  P  T  Y  F  A  G  K  A  H  I  A  F  I  Q  N  *  L  S  L  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31494" stop="31927"/>
                    <exon start="31999" stop="32068"/>
                    <exon start="32175" stop="32198"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPLLQTHKAISNFSVFPFKSVAICLPKCKVKSVHIPSVSEASSISSTNLEEEEDDDPTAELVYLDPEIDPESLSEWELDFCSRPILDIRGKKLWELLVCDDSLSLQYTKYFPNNLINSITLKDALLSISNDLGIPLPDKIRFFRSQMQTIITRACNELAIKPVPSKRRKLKSRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="94963" PGL_stop="94036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94963" e_stop="94036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="94963" e_stop="94036" e_length="928"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94963" stop="94036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582482" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTATCCTACTATTTTATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTGTGTAAATAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAAATTTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTTCTTAAAATTACAAGGTGTGCGTGGTCTTATTGACACTTTTTATGAAACTTTAGAAATTTTACCGGAAAAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACAGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATATGTGACGTATTCTTGGTCTTAATTCTATTAACCGTGATAGTTTTGAAGAATATCTTAATTAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGAATATGATGCTTTCAGTGCGGCAAGGTTTCAAATTGATGATCATAGACATTCATTGGCGGAAGACAGTTTCAAAACAACTGTTTTATTTAGAGATTAGTCCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGATGATGAATTAGAGGCCCAAGAATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGCGACAATTAAAATTAAATTTTAAAGGAGAAAACATATATTTTTATATTACATTCGAGAACTAATTGAAACAGAACCCTTCCTAGAAGGTGGCTGC</gDNA_template>
            <first_frame> L  L  S  Y  Y  F  I  R  I  N  K  Y  L  C  S  Y  N  S  I  V  *  I  I  D  K  F  R  V  A  I  E  G  M  I  E  N  F  K  K  Y  F  F  P  I  P  Q  V  F  L  T  A  T  L  L  H  P  S  *  N  Y  K  V  C  V  V  L  L  T  L  F  M  K  L  *  K  F  Y  R  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  N  C  C  M  K  N  I  E  L  Q  K  I  F  K  E  K  L  V  K  L  L  M  L  R  L  I  C  H  F  Q  F  Q  L  I  C  D  V  F  L  V  L  I  L  L  T  V  I  V  L  K  N  I  L  I  N  L  *  K  Y  *  K  S  K  M  A  M  K  I  Y  *  D  G  G  V  G  E  A  M  H  F  Q  L  *  A  K  W  F  V  M  F  *  L  F  K  L  H  Q  L  N  M  M  L  S  V  R  Q  G  F  K  L  M  I  I  D  I  H  W  R  K  T  V  S  K  Q  L  F  Y  L  E  I  S  P  M  P  K  G  G  I  T  I  C  Q  S  *  V  K  N  K  Q  V  G  S  K  H  K  L  N  A  V  M  M  N  *  R  P  K  N  F  *  Q  V  C  Q  H  R  R  I  S  P  S  I  *  C  D  N  *  N  *  I  L  K  E  K  T  Y  I  F  I  L  H  S  R  T  N  *  N  R  T  L  P  R  R  W  L  </first_frame>
            <second_frame>  Y  Y  P  T  I  L  S  V  L  I  N  I  C  A  L  T  I  Q  L  C  K  *  *  I  N  L  E  L  Q  L  K  V  *  L  K  I  L  K  N  I  F  F  L  F  L  K  F  F  *  R  L  L  Y  F  I  L  L  K  I  T  R  C  A  W  S  Y  *  H  F  L  *  N  F  R  N  F  T  G  K  N  F  K  L  S  N  V  *  V  *  H  K  S  R  S  K  T  V  V  *  K  I  *  N  Y  R  K  F  S  R  R  S  W  S  N  F  *  C  *  D  *  F  V  T  S  N  F  N  L  Y  V  T  Y  S  W  S  *  F  Y  *  P  *  *  F  *  R  I  S  *  L  I  F  R  N  I  E  N  Q  R  W  Q  *  R  F  I  R  M  V  E  *  A  K  R  C  I  S  N  F  E  Q  N  G  S  *  C  S  S  Y  S  S  F  I  S  *  I  *  C  F  Q  C  G  K  V  S  N  *  *  S  *  T  F  I  G  G  R  Q  F  Q  N  N  C  F  I  *  R  L  V  Q  C  R  K  E  E  *  Q  F  A  K  V  K  *  K  T  S  K  L  D  Q  N  T  N  *  M  Q  *  *  *  I  R  G  P  R  I  S  S  K  F  A  N  T  G  G  Y  H  H  R  Y  D  A  T  I  K  I  K  F  *  R  R  K  H  I  F  L  Y  Y  I  R  E  L  I  E  T  E  P  F  L  E  G  G  C </second_frame>
            <third_frame>   I  I  L  L  F  Y  P  Y  *  *  I  F  V  L  L  Q  F  N  C  V  N  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  F  *  K  I  F  F  S  Y  S  S  S  F  F  N  G  Y  F  T  S  S  F  L  K  L  Q  G  V  R  G  L  I  D  T  F  Y  E  T  L  E  I  L  P  E  K  I  S  N  C  Q  T  C  K  S  S  I  K  V  E  A  K  L  L  Y  E  K  Y  R  T  T  E  N  F  Q  G  E  V  G  Q  T  S  N  V  E  I  D  L  S  L  P  I  S  T  Y  M  *  R  I  L  G  L  N  S  I  N  R  D  S  F  E  E  Y  L  N  *  S  L  E  I  L  K  I  K  D  G  N  E  D  L  L  G  W  W  S  R  R  S  D  A  F  P  T  L  S  K  M  V  R  D  V  L  A  I  Q  A  S  S  V  E  Y  D  A  F  S  A  A  R  F  Q  I  D  D  H  R  H  S  L  A  E  D  S  F  K  T  T  V  L  F  R  D  *  S  N  A  E  R  R  N  N  N  L  P  K  L  S  K  K  Q  A  S  W  I  K  T  Q  I  E  C  S  D  D  E  L  E  A  Q  E  F  L  A  S  L  P  T  P  E  D  I  T  I  D  M  M  R  Q  L  K  L  N  F  K  G  E  N  I  Y  F  Y  I  T  F  E  N  *  L  K  Q  N  P  S  *  K  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94850" stop="94572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFFSYSSSFFNGYFTSSFLKLQGVRGLIDTFYETLEILPEKISNCQTCKSSIKVEAKLLYEKYRTTENFQGEVGQTSNVEIDLSLPISTYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94514" stop="94287"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLEILKIKDGNEDLLGWWSRRSDAFPTLSKMVRDVLAIQASSVEYDAFSAARFQIDDHRHSLAEDSFKTTVLFRD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155E05.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94286" stop="94068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNAERRNNNLPKLSKKQASWIKTQIECSDDELEAQEFLASLPTPEDITIDMMRQLKLNFKGENIYFYITFEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="108173" PGL_stop="107896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108173" e_stop="107896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="108173" e_stop="107896" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108173" stop="107896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTATCTGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGCTTATTATTCATCTGAGAACCAACTAGCTGATATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGACAAAGAATTGGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTAACATTTTTCAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGGCTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> I  L  S  E  K  S  N  N  L  M  K  C  C  L  L  I  I  H  L  R  T  N  *  L  I  F  S  P  S  H  C  Q  R  K  G  L  K  I  *  D  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  T  F  F  S  L  L  L  F  L  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  G  L  V  N  F  S  C  S  T  F  *   </first_frame>
            <second_frame>  F  Y  L  R  S  P  T  I  *  *  S  V  A  C  L  L  F  I  *  E  P  T  S  *  Y  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  T  K  N  W  C  L  P  Q  K  C  Q  G  G  V  L  D  N  *  H  F  S  A  Y  Y  Y  F  Y  C  F  L  L  I  S  I  *  C  F  L  F  S  S  *  A  *  S  T  L  V  A  Q  L  S  E  </second_frame>
            <third_frame>   F  I  *  E  V  Q  Q  S  N  E  V  L  L  A  Y  Y  S  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  L  R  Q  R  I  G  V  C  H  K  N  A  K  E  E  C  *  T  I  N  I  F  Q  L  I  I  I  F  T  V  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  Q  L  *  L  L  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155E05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="156647" PGL_stop="156877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="156647" e_stop="156877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="156647" e_stop="156877" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156647" stop="156877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTATAAATCTAGGATGTGTTTAATAGATCATATAATGTTTGAGTAAACACGGGAAAGTCCAACAAGAAATAAATAATTGATGAGTATTATTGACGAGAAAAATAAAGGACTACAAATTTGAAGAAACCAAATGGGCAGTAGCAATGTGTGATACATATGATACATGATTCATCATTGTAATAATATCATTGATGCTTGAATTTCCTCTAATGTTCGTCCCTTCGTCTCAG</gDNA_template>
            <first_frame> G  I  N  L  G  C  V  *  *  I  I  *  C  L  S  K  H  G  K  V  Q  Q  E  I  N  N  *  *  V  L  L  T  R  K  I  K  D  Y  K  F  E  E  T  K  W  A  V  A  M  C  D  T  Y  D  T  *  F  I  I  V  I  I  S  L  M  L  E  F  P  L  M  F  V  P  S  S  Q </first_frame>
            <second_frame>  V  *  I  *  D  V  F  N  R  S  Y  N  V  *  V  N  T  G  K  S  N  K  K  *  I  I  D  E  Y  Y  *  R  E  K  *  R  T  T  N  L  K  K  P  N  G  Q  *  Q  C  V  I  H  M  I  H  D  S  S  L  *  *  Y  H  *  C  L  N  F  L  *  C  S  S  L  R  L   </second_frame>
            <third_frame>   Y  K  S  R  M  C  L  I  D  H  I  M  F  E  *  T  R  E  S  P  T  R  N  K  *  L  M  S  I  I  D  E  K  N  K  G  L  Q  I  *  R  N  Q  M  G  S  S  N  V  *  Y  I  *  Y  M  I  H  H  C  N  N  I  I  D  A  *  I  S  S  N  V  R  P  F  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155E05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 99 chains have been computed
$ 
$ memory statistics:
$ 9912 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1982 bytes was the average size of a spliced alignment
$ 9336 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2334 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 113 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:38:37
-->
