<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:27:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244853" ref_strand="+" ref_description="SGN-E244853 [cLEF-2-M8]">
      <seq>caaggcaggggaaaaagatattattagtgtggatgctcgtccctccgatgccattaatgttgccagaagatgtaaggcaccaatatttgtgaataagcaaattgtcttgactgatgcaactagaataggttatggaatggaccgatctagcagaattaagtccacctatgatgtattactagatagtgcatcagatggccccgatttactttctgaagaacttagtatgttgagaaatatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="1780" stop="460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1573" g_stop="1570" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1569" i_stop="1477" i_length="93">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1476" g_stop="1405" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="76" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1404" i_stop="1002" i_length="403">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1001" g_stop="892" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="186" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="891" i_stop="818" i_length="74">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="817" g_stop="760" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="244" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E244853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1573" e_stop="1570"/>
          <exon e_start="1476" e_stop="1405"/>
          <exon e_start="1001" e_stop="892"/>
          <exon e_start="817" e_stop="760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATGTTCAAAATACTTTGTTCGTAGATTGAAAATATACTCCTACTTCTGTAATTGCATTTAATCTGAATTTAACATTTTTGATAATACCCAGGCAGGGGAAAAAGATATTATTAGTGTGGATGCTCGTCCCTCCGATGCCATTAATGTTGCCAGAAGATGTAAGGTATTGTTCTTATGGGACTTTGAGATTCAAGTTTGATAATCAATCGCTTCATATAAATTGCTTACCATTGTAGAAAACATTATGTCTCCTGACTGTTTTCCATTTGACCTTTTTCCTAGCATCCTGAGATGAAAAGATTGATCTCTCTTCCTTGAGCCCAGAGTCTATCTGAAACAGCCTCTCTACCTTCCAAGGTAGGGGTAAGGTCGAATACACACGATCTCACTAGACCTACTTGTGAGATTCATAAGGACTTGTGGTAAAGTTTTATGTGTATGATCAACTTCTTTTCAGTTTTAGCTCCTGTTAGAATCAGTCTTATTAATCTCTCTTGAGCTGTAATGCCCCACCTACAAATTTTGACAGCCGTTATCTGTAATTGAGCTTGTTCTGGTTTATGCAGGCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACTAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTACTAGATAGGTTGGTCTCTTTTCTCTCCTATGTACATTTCTTTGGACTTTCTCCAAACTTAAGACTAATTCTGTTTGGCGCAGTGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTATGTTGAGAAATATGAAC</genome_strand>
        <mrna_strand>CAAG.............................................................................................GCAGGGGAAAAAGATATTATTAGTGTGGATGCTCGTCCCTCCGATGCCATTAATGTTGCCAGAAGATGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACTAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTACTAGATAG..........................................................................TGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTATGTTGAGAAATATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539608" ref_strand="+" ref_description="SGN-E539608 [TUS-59-H7]">
      <seq>tttgtcttctccacctaatttattttatccctaaatccccccctttttttttcctcctctctctgtaaacccacattgaatttattgtctaacaatgctcggcgttgagttaaggatctccaccgtcgccggagttttcaccgatctaccggaaacaagtcgccggagtgccagctggaactgtaactcctccattggaaatatctcatatcatctctcttccagaaataggcattgtagaaagtccagattcatggtaatctgtagcaagtcatcacgcggaagctttaatcggaaatctaatcagagtgatgaaccgggtgatgattatattgaagctgtcgttctcgtttcagagactatgaagcactacaaaatgcatatgggtggatttcaagaagaaacaagatggcactcatctgctcagctgattccctcttcttttcatcctaaggatcgtattgctaatgcatcatctttagggacaggatttcttcgccgtttcaagaatccaactatttttcttaagatttcctgtgatgcagaatatgtcttaccaattattgttggagaacatgctgtcgaaaaacttatagattcattgcatgaggaggagactggggattgccccgacgagttcctgcttttgaggaatctattgttgaaatctggctatgaagttaaaatggtgaagattacagaaagagtgactagtacttattttgccagaatatttttccacaaggcaggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="4442" stop="1265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4142" g_stop="3787" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3786" i_stop="2667" i_length="1120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2666" g_stop="2454" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="569" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2453" i_stop="2359" i_length="95">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2358" g_stop="2306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="622" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2305" i_stop="2208" i_length="98">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2207" g_stop="2151" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="679" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2150" i_stop="1636" i_length="515">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1635" g_stop="1570" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="745" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1569" i_stop="1477" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1476" g_stop="1466" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="756" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E539608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4142" e_stop="3787"/>
          <exon e_start="2666" e_stop="2454"/>
          <exon e_start="2358" e_stop="2306"/>
          <exon e_start="2207" e_stop="2151"/>
          <exon e_start="1635" e_stop="1570"/>
          <exon e_start="1476" e_stop="1466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAGGTATGGAAAATTACCGTTTTGCCCTTTTCTCCGATATTTTTTTGTTAGAGAAATACTGATGCAGGTAATATATTCTTCATGAACATTACTTTGTTGAAATGTATGAAAAAGATCAGATTTTTCTCTCTATGCTTTTGCTTTTTTAATCAATGTAGCTCAACTGCTATTAGTAAGTGAAAAATGGAAAATTGGTTGCTTAGCTGCTAGCTCCACAGACTTTGAACAAGTTGCTTTCCCAGTAACATTTGATGATCCTGTACGAATTAGTCTAAAAAACCAATGTTATGGAATGGAGGGACCTAAAATCTTTGCTCCGCCTCTCCAAAAAATGTATTATCACACGTGGATCATTCAAAAAGAAACTACTTTTGGAGTATCTGATGCACACATTTTAATCATTTCAATTTGTATAAAAAATGACTTGAGATGGAAAATCATGCGCTCTACAATAATTTGAGAAACAAAATAAGTCAATTGATAATTTATATCTTGAATACTGAATCACAGAATCAGTTGAGTTCCCTATTTGATTCATATGATTCCATTTTGGTTTAGTCAGGTCTATTTCATGTGGTACCAAATGAATATGTATATGTGGATTTCTCTGCTTCCATTATGTAAGTTGTGACATTGGTCCTGGTAGAATTTTCATATTTTAGAAATTTCTACCAAGTCCTTTTCTATCACCTTTTGGAGGTCTGTTCCAGACATGACCAAACTATCACAGGCTCTCTCTCTTTATTCTCTGCCTGTGCTACTTGCATCTTTTTTTATTATTCTTCTCCAATATTCTACGCTTGCACATCTGTCTTATTATCCTTATTCATCCATCTTAATATCCATATGTCAATATTTATTCCGTGGATGTGATGGGACATAGGGGCTCAGCACTCAATCTTAATATAATATTGCTGGTCTAGTACTTATATAAAAATAACCTTTCACTTTGTTAGGCATCTTTTTATTGCATAGCCACTCATTCATCTCAAATACTTAAGTTATGTGTACTTTGAAATCTAATTGCTTATCACATTTTATCTGTAGTCTTTCTACTGTATATTAGTATTTTCTACCCTGCATCTGAGGCTAAGCATGTTTACCAATGCTGCAATGACTATAGAGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTGGTATGTACTTTTAAATTTCTACTTGGACAACTAGCAGTGTCTTGTAAACAGTTATATCATACTGTTTTCATAACTCTTACTGCCTGCTACTTCAGGAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGGGTAATTTTTTTCAAGATTTTGAGAACGGATTTTCTGACTACTTTTCCTTATCTTTCTCTTAACATTTCTTTGAGATGCTGACGTTGGGCCTGCTGCAGGATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAAGTATGTCAATACCACTTTTTATCTATTTCATCATATGCATCCTTTCTCAATCTTGATTTTTTAATTATAAAGTAATATCAATCTTGATTTTAGCCATGTTTACTTTTAGCTTCTCTTTTTGAATTTGTTACCACATTCCCTGATATTAGAAACCTTTGGTTTTCAGAAGCATGTCATATATTCAAATGTTCATATTTTTAAGTTTTATATATTGAAATGAAACTTTAGGAGGCGGCCATTAACTCTTTCTGCTTATCTTTTAGCTGCCAGTTCATGATACTAATATGCTTTTACCAAGTATCATGAAAAGTTCTTACTGGTTACTTTTACTTGTAACATGGCAAGTGAGCAGGAGGCGGCTACTCCTCACTTACTTCTACGTGTTTGTAAGATGTAACACTTCCTTTGAGATGTGATCACCTTTAAATTGGGGAAACAGACACAGACACCGCGCCTTTAATTGTTGTTTGAAGTGCTAGTCTTACTTTCTTAATTTGGTGATGTATCATTTCTAGGTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAGGTATGTTCAAAATACTTTGTTCGTAGATTGAAAATATACTCCTACTTCTGTAATTGCATTTAATCTGAATTTAACATTTTTGATAATACCCAGGCAGGGGAAAA</genome_strand>
        <mrna_strand>TTTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTG...............................................................................................GAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGG..................................................................................................GATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAG.............................................................................................GCAGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285242" ref_strand="+" ref_description="SGN-E285242 [cLER-20-H16]">
      <seq>ttgtcttctccacctaatttattttatccctaaatccccccctttttttttcctcctctctctgtaaacccacattgaatttattgtctaacaatgctcggcgttgagttaaggatctccaccgtcgccggagttttcaccgatctaccggaaacaagtcgccggagtgccagctggaactgtaactcctccattggaaatatctcatatcatctctcttccagaaataggcattgtagaaagtccagattcatggtaatctgtagcaagtcatcacgcggaagctttaatcggaaatctaatcagagtgatgaaccgggtgatgattatattgaagctgtcgttctcgtttcagagactatgaagcactacaaaatgcatatgggtggatttcaagaagaaacaagatggcactcatctgctcagctgattccctcttcttttcatcctaaggatcgtattgctaatgcatcatctttagggacaggatttcttcgccgtttcaagaatccaactatttttcttaagatttcctgtgatgcagaatatgtcttaccaattattgttggagaacatgctgtcgaaaaacttatagattcattgcatgaggaggagactggggattgccccgacgagttcctgcttttgaggaatctattgttgaaatctggctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="4441" stop="1853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4141" g_stop="3787" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3786" i_stop="2667" i_length="1120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2666" g_stop="2454" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="568" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2453" i_stop="2359" i_length="95">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2358" g_stop="2306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="621" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2305" i_stop="2208" i_length="98">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2207" g_stop="2153" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="676" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E285242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4141" e_stop="3787"/>
          <exon e_start="2666" e_stop="2454"/>
          <exon e_start="2358" e_stop="2306"/>
          <exon e_start="2207" e_stop="2153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAGGTATGGAAAATTACCGTTTTGCCCTTTTCTCCGATATTTTTTTGTTAGAGAAATACTGATGCAGGTAATATATTCTTCATGAACATTACTTTGTTGAAATGTATGAAAAAGATCAGATTTTTCTCTCTATGCTTTTGCTTTTTTAATCAATGTAGCTCAACTGCTATTAGTAAGTGAAAAATGGAAAATTGGTTGCTTAGCTGCTAGCTCCACAGACTTTGAACAAGTTGCTTTCCCAGTAACATTTGATGATCCTGTACGAATTAGTCTAAAAAACCAATGTTATGGAATGGAGGGACCTAAAATCTTTGCTCCGCCTCTCCAAAAAATGTATTATCACACGTGGATCATTCAAAAAGAAACTACTTTTGGAGTATCTGATGCACACATTTTAATCATTTCAATTTGTATAAAAAATGACTTGAGATGGAAAATCATGCGCTCTACAATAATTTGAGAAACAAAATAAGTCAATTGATAATTTATATCTTGAATACTGAATCACAGAATCAGTTGAGTTCCCTATTTGATTCATATGATTCCATTTTGGTTTAGTCAGGTCTATTTCATGTGGTACCAAATGAATATGTATATGTGGATTTCTCTGCTTCCATTATGTAAGTTGTGACATTGGTCCTGGTAGAATTTTCATATTTTAGAAATTTCTACCAAGTCCTTTTCTATCACCTTTTGGAGGTCTGTTCCAGACATGACCAAACTATCACAGGCTCTCTCTCTTTATTCTCTGCCTGTGCTACTTGCATCTTTTTTTATTATTCTTCTCCAATATTCTACGCTTGCACATCTGTCTTATTATCCTTATTCATCCATCTTAATATCCATATGTCAATATTTATTCCGTGGATGTGATGGGACATAGGGGCTCAGCACTCAATCTTAATATAATATTGCTGGTCTAGTACTTATATAAAAATAACCTTTCACTTTGTTAGGCATCTTTTTATTGCATAGCCACTCATTCATCTCAAATACTTAAGTTATGTGTACTTTGAAATCTAATTGCTTATCACATTTTATCTGTAGTCTTTCTACTGTATATTAGTATTTTCTACCCTGCATCTGAGGCTAAGCATGTTTACCAATGCTGCAATGACTATAGAGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTGGTATGTACTTTTAAATTTCTACTTGGACAACTAGCAGTGTCTTGTAAACAGTTATATCATACTGTTTTCATAACTCTTACTGCCTGCTACTTCAGGAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGGGTAATTTTTTTCAAGATTTTGAGAACGGATTTTCTGACTACTTTTCCTTATCTTTCTCTTAACATTTCTTTGAGATGCTGACGTTGGGCCTGCTGCAGGATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATG</genome_strand>
        <mrna_strand>TTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTG...............................................................................................GAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGG..................................................................................................GATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322573" ref_strand="+" ref_description="SGN-E322573 [cTOB-26-J14]">
      <seq>tatttttgtcttctccacctaatttattttatccctaaatccccccctttttttttcctcctctctctgtaaacccacattgaatttattgtctaacaatgctcggcgttgagttaaggatctccaccgtcgccggagttttcaccgatctaccggaaacaagtcgccggagtgccagctggaactgtaactcctccattggaaatatctcatatcatctctcttccagaaataggcattgtagaaagtccagattcatggtaatctgtagcaagtcatcacgcggaagctttaatcggaaatctaatcagagtgatgaaccgggtgatgattatattgaagctgtcgttctcgtttcagagactatgaagcactacaaaatgcatatgggtggatttcaagaagaaacaagatggcactcatctgctcagctgattccctcttcttttcatcctaaggatcgtattgctaatgcatcatctttagggacaggatttcttcgccgtttcaagaatccaactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="4446" stop="2201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4146" g_stop="3787" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3786" i_stop="2667" i_length="1120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2666" g_stop="2501" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="526" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E322573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4146" e_stop="3787"/>
          <exon e_start="2666" e_stop="2501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAGGTATGGAAAATTACCGTTTTGCCCTTTTCTCCGATATTTTTTTGTTAGAGAAATACTGATGCAGGTAATATATTCTTCATGAACATTACTTTGTTGAAATGTATGAAAAAGATCAGATTTTTCTCTCTATGCTTTTGCTTTTTTAATCAATGTAGCTCAACTGCTATTAGTAAGTGAAAAATGGAAAATTGGTTGCTTAGCTGCTAGCTCCACAGACTTTGAACAAGTTGCTTTCCCAGTAACATTTGATGATCCTGTACGAATTAGTCTAAAAAACCAATGTTATGGAATGGAGGGACCTAAAATCTTTGCTCCGCCTCTCCAAAAAATGTATTATCACACGTGGATCATTCAAAAAGAAACTACTTTTGGAGTATCTGATGCACACATTTTAATCATTTCAATTTGTATAAAAAATGACTTGAGATGGAAAATCATGCGCTCTACAATAATTTGAGAAACAAAATAAGTCAATTGATAATTTATATCTTGAATACTGAATCACAGAATCAGTTGAGTTCCCTATTTGATTCATATGATTCCATTTTGGTTTAGTCAGGTCTATTTCATGTGGTACCAAATGAATATGTATATGTGGATTTCTCTGCTTCCATTATGTAAGTTGTGACATTGGTCCTGGTAGAATTTTCATATTTTAGAAATTTCTACCAAGTCCTTTTCTATCACCTTTTGGAGGTCTGTTCCAGACATGACCAAACTATCACAGGCTCTCTCTCTTTATTCTCTGCCTGTGCTACTTGCATCTTTTTTTATTATTCTTCTCCAATATTCTACGCTTGCACATCTGTCTTATTATCCTTATTCATCCATCTTAATATCCATATGTCAATATTTATTCCGTGGATGTGATGGGACATAGGGGCTCAGCACTCAATCTTAATATAATATTGCTGGTCTAGTACTTATATAAAAATAACCTTTCACTTTGTTAGGCATCTTTTTATTGCATAGCCACTCATTCATCTCAAATACTTAAGTTATGTGTACTTTGAAATCTAATTGCTTATCACATTTTATCTGTAGTCTTTCTACTGTATATTAGTATTTTCTACCCTGCATCTGAGGCTAAGCATGTTTACCAATGCTGCAATGACTATAGAGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTT</genome_strand>
        <mrna_strand>TATTTTTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228775" ref_strand="+" ref_description="SGN-E228775 [cLEL-29-H21](-)">
      <seq>ccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagtactggttaatgaatgtatgtctgggttacaccttgaatgtggattatctgtaatctttctgaaactttatgatgtatgtattctctttcgttgcttgtcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="6582" stop="5631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6282" g_stop="5932" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="374"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E228775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6282" e_stop="5932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</genome_strand>
        <mrna_strand>CCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229063" ref_strand="+" ref_description="SGN-E229063 [cLEL-29-H21](-)">
      <seq>tctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagtactggttaatgaatgtatgtctgggttaccccttgaatgtggattatctgtaatctttctgaaactttatgatgtatgtattctctttcgttgcttgtccaaaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="6546" stop="5632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6246" g_stop="5932" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="338"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E229063" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6246" e_stop="5932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</genome_strand>
        <mrna_strand>TCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACCCCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745256" ref_strand="+" ref_description="SGN-E745256 [GI|47105822]">
      <seq>ggcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctcctcgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaacgagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagtactggttaatgaatgtatgtctgggttacaccttgaatctggattatctgtaatctttctgaaactttatgatgtatgtattctctttcgttgcttgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9511" stop="5631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9212" g_stop="9138" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="95" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="206" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="306" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="456" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="529" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="5935" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="936" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="959"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E745256" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9212" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="5935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTT</genome_strand>
        <mrna_strand>GGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCTCGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACGAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATCTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715940" ref_strand="+" ref_description="SGN-E715940 [FB15CG05]">
      <seq>ttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagtactgggtaatgattgtatgtctgggttacaccttgaatgtggattatctgtaatctttctgaaactttatgatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9478" stop="5655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9178" g_stop="9138" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="61" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="172" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="272" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="422" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="495" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="5958" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="879" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="882" polyA_stop="897"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E715940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9178" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="5958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGAT</genome_strand>
        <mrna_strand>TTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGGTAATGATTGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395674" ref_strand="+" ref_description="SGN-E395674 [TUS-17-I8](-)">
      <seq>ttttttttttttgttggaagagaacacccgatattagcaatttcatttttttccattacaaggaattcattctttagaatacattatttggtcgagataacccatttgttcttgatgtaaatcacatatgttcagatttcacatattgagatgatttattttgtttttcagtttcgtagaaaacggccaaggactccaacacctggtcatttttttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatttccaagacgttttccatatagaggtgggggagattattttcccagacactctccatatagaggtgggggagattattttcctagacgctccccttatgctggaaggtcgagacgtgcgcgatcccggtcatattttccttatgaaaggaactaccctcgtggttatagataagtgggttttgtcctcagctatggaaactgcttttgtaaggatttataagtttgatgtggactagttttgatgttaaagagtactggttaatgaatgtatgtttgggttaccccttgaatgtggattttttgtaatttttttgaaactttatgatgtatgtattttcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="6968" stop="5643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6666" g_stop="6422" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6341" g_stop="5958" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="628" r_length="384" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="678"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E395674" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6666" e_stop="6422"/>
          <exon e_start="6341" e_stop="5958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGTTG-GAAGAGAACACCCGATATTAGCAATTTCATTTTTTTCCATTACAAGGAATTCATTCTTTAGAATACATTATTTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATTTATTTTGTTTTTCAGTTTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTTTTTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATTTCCAAGACGTTTTCCATATAGAGGTGGGGGAGATTATTTTCCCAGACACTCTCCATATAGAGGTGGGGGAGATTATTTTCCTAGACGCTCCCCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTTTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTTGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATTTATAAGTTTGATGTGGACTAGTTTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTTTGGGTTACCCCTTGAATGTGGATTTTTTGTAATTTTTTTGAAACTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342460" ref_strand="+" ref_description="SGN-E342460 [cTOF-8-K24]">
      <seq>tcgtattggcaatttagggttcgctccatcatccgaaatggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatccccgtcatattctncttatgaaaggactacccctcgtgttatagataagtgggntttcgtcctcagctatggaaactgcttttgtaaggatctantagtttgatgtggactagtcttgatgttaaagagtactggttaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9477" stop="5717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9177" g_stop="9138" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8039" i_length="1099">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="151" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="401" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6341" g_stop="6017" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="799" r_length="325" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E342460" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9177" e_stop="9138"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTA-CCCTCGTGGTTATAGATAAGTGGG-TTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAAT</genome_strand>
        <mrna_strand>TCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCCGTCATATTCTNCTTATGAAAGG-ACTACCCCTCGT-GTTATAGATAAGTGGGNTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTANTAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379886" ref_strand="+" ref_description="SGN-E379886 [TUS-3-C18](-)">
      <seq>aggagtgcatttggtgattctcttttctttggatgttagcatcataggttatgatttcatagaattacaaatatttctgtttttttttgttgtgaagagaacacccgatattagcaatttcatattcttccattacaaggaattcattctctagaatacattatctggtcgagataacccatttgttcttgatgtaaatcacatatgttcagatttcacatattgagatgatctattttgtttttcagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="7042" stop="5732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6742" g_stop="6422" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6341" g_stop="6032" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="631" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E379886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6742" e_stop="6422"/>
          <exon e_start="6341" e_stop="6032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAG</genome_strand>
        <mrna_strand>AGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339475" ref_strand="+" ref_description="SGN-E339475 [cTOF-4-J18]">
      <seq>ggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaagaactaccctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9485" stop="5825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9185" g_stop="9138" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="68" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="179" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="279" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="429" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="502" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="6125" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="718" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E339475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9185" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCG</genome_strand>
        <mrna_strand>GGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAA-GAACTACCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731096" ref_strand="+" ref_description="SGN-E731096 [LA26AE06]">
      <seq>gatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="8276" stop="5829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7976" g_stop="7928" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="149" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="299" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7273" i_stop="7157" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7156" g_stop="6957" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="499" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6956" i_stop="6495" i_length="462">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="572" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6341" g_stop="6129" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="784" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E731096" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7976" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="7156" e_stop="6957"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACC</genome_strand>
        <mrna_strand>GATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG.....................................................................................................................CAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGG-ACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290116" ref_strand="+" ref_description="SGN-E290116 [cLET-5-B24]">
      <seq>gcaatttagggttcgctccatcatcctaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagtttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatgggtatcatggtgatcggggtaggtatcgtggccgtggtgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9469" stop="5998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9169" g_stop="9138" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="52" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="413" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="486" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="6298" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="530" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E290116" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9169" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTAT</genome_strand>
        <mrna_strand>GCAATTTAGGGTTCGCTCCATCATCCTAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGTTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GGTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290120" ref_strand="+" ref_description="SGN-E290120 [cLET-5-D8]">
      <seq>ttcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagtttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="8335" stop="6013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8035" g_stop="7928" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="208" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="358" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="431" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6341" g_stop="6313" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="460" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E290120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8035" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGT</genome_strand>
        <mrna_strand>TTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGTTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310382" ref_strand="+" ref_description="SGN-E310382 [cTOA-10-C24]">
      <seq>tcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctgggcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9494" stop="6114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9194" g_stop="9138" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="77" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="188" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="288" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="438" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="511" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="6328" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="525" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E310382" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9194" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGAT</genome_strand>
        <mrna_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGGCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332636" ref_strand="+" ref_description="SGN-E332636 [cTOD-18-P15]">
      <seq>gcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatgggtatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9469" stop="6119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9169" g_stop="9138" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="52" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="413" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="7184" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7183" g_stop="6957" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="640" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6956" i_stop="6495" i_length="462">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="713" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6341" g_stop="6333" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="722" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E332636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9169" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="7183" e_stop="6957"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATG</genome_strand>
        <mrna_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GGTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310947" ref_strand="+" ref_description="SGN-E310947 [cLEZ-17-D18]">
      <seq>tcaatttatggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9494" stop="6140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9194" g_stop="9138" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="77" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="188" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="288" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="438" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6440" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E310947" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9194" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</genome_strand>
        <mrna_strand>TCAATTTATGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306573" ref_strand="+" ref_description="SGN-E306573 [cLEX-13-H20]">
      <seq>tcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9494" stop="6140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9194" g_stop="9138" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="77" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="188" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="288" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="438" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6440" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E306573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9194" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</genome_strand>
        <mrna_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689342" ref_strand="+" ref_description="SGN-E689342 [t3_tus_84_E04]">
      <seq>ggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9470" stop="6140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9170" g_stop="9138" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="53" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="164" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="264" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="414" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="7184" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7183" g_stop="6957" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="641" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6956" i_stop="6495" i_length="462">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6494" g_stop="6440" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="696" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E689342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9170" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="7183" e_stop="6957"/>
          <exon e_start="6494" e_stop="6440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</genome_strand>
        <mrna_strand>GGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265803" ref_strand="+" ref_description="SGN-E265803 [cLEI-11-E15]">
      <seq>tcaactcttgcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9520" stop="6652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9220" g_stop="9138" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="103" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="214" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="314" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="464" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="7184" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7183" g_stop="6957" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="691" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E265803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9220" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="7183" e_stop="6957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</genome_strand>
        <mrna_strand>TCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332915" ref_strand="+" ref_description="SGN-E332915 [cTOD-19-I22]">
      <seq>gcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9469" stop="6674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9169" g_stop="9138" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="52" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="413" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="7184" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7183" g_stop="6974" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="623" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E332915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9169" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="7183" e_stop="6974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAAT</genome_strand>
        <mrna_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344591" ref_strand="+" ref_description="SGN-E344591 [cTOF-14-O7]">
      <seq>tttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaaggtcagctatttatacattgattggtgaaccattgttctgttggcttgcttttcttttttcttgacttggaggttttctgattatattcagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9490" stop="6732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9190" g_stop="9138" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="73" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="184" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7032" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="676" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E344591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9190" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</genome_strand>
        <mrna_strand>TTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208059" ref_strand="+" ref_description="SGN-E208059 [cLEC-34-O16]">
      <seq>ttaaagcttcaactcttgcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccataagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9528" stop="7006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9228" g_stop="9138" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="111" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="222" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="322" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7306" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="440" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E208059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9228" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCG</genome_strand>
        <mrna_strand>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCATAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213264" ref_strand="+" ref_description="SGN-E213264 [cLEC-71-A21]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctaatgaagtctcccactgtatggtcgtcaaagatcctcctacttattgataaaattggtcatatgctaagtctttcttgagttagaaagtaccaatcaacctttatggataagtttttggcattttttacaagtaaaattgttgagcatgttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9473" stop="7970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9173" g_stop="9138" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8270" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="765" r_length="729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E213264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9173" e_stop="9138"/>
          <exon e_start="8998" e_stop="8270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379101" ref_strand="+" ref_description="SGN-E379101 [TUS-3-C18]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctaatgaagtctcccactgtatggtcgtcaaagatcctcctacttattgataaaattggtcatatgctaagtctttcttgagttagaaagtaccaatcaacctttatggataagtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9473" stop="8007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9173" g_stop="9138" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8307" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="728" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E379101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9173" e_stop="9138"/>
          <exon e_start="8998" e_stop="8307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395675" ref_strand="+" ref_description="SGN-E395675 [TUS-17-I8]">
      <seq>tattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctattgaagtctccccctgtatggtcgtcaaaaatcctcctacttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9474" stop="8079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9174" g_stop="9138" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8379" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="657" r_length="620" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E395675" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9174" e_stop="9138"/>
          <exon e_start="8998" e_stop="8379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTG</genome_strand>
        <mrna_strand>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTATTGAAGTCTCCCCCTGTATGGTCGTCAAAAATCCTCCTACTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322597" ref_strand="+" ref_description="SGN-E322597 [cTOB-26-C23]">
      <seq>caatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggcaagctttgctctctctaatctcccattatatctttcttctatttaacatatatgtgtttttttgcatattttcagaattttttaacctaattaattgtcgaaacaacaaattttatcatctttatgatttcttgcaggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9493" stop="8191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9193" g_stop="8491" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E322597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9193" e_stop="8491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</genome_strand>
        <mrna_strand>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210349" ref_strand="+" ref_description="SGN-E210349 [cLEC-35-J15]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9473" stop="8191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9173" g_stop="9138" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8491" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="544" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E210349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9173" e_stop="9138"/>
          <exon e_start="8998" e_stop="8491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708776" ref_strand="+" ref_description="SGN-E708776 [FA36DA01]">
      <seq>catttattcaggcaataagatcagctcagcatttcatatatattgaaaatcagtattttcttggatcgtcatatgcttgggaatcatacaaagatgcaggagctgatcatctgataccgatggaattggcactgaaaatcactagtaaaattagagctagggaacgattttgtgtatatgttgtcgtgcccatgtggcctgaaggggaccccaagtcaatcactatgcaggaaatactcttctggcagagccagacaatacagatgatgtatcaagttattgcgacagagctcaaatcgatgcagattttggactcacatccacaagattatttaaatttctactgccttggtaaccgtgaggaaattccaggctctattgctcaatcttctggtaatggtgataaggtctcagactcatataagtttcagcgtttcatgatatatgttcatgccaaaggaatgatagtggatgatgagtatgttataatgggctctgccaacataaatcaacgatccttagctgggtcgaaagatacagagatagctatgggtgcctaccagcctcattatgcatggacagaaaagcaaaggcgtccacggggacagatctatggatacagaatgtccctatgggcagaacaccttgggaggatagaagaatgtttcaaggaaccagaggcgctaacatgcgtgaggaaggtgaatgaggttgctgaaggaaactggaagagttacacagctgaaaagttcactcaactacatggacatcttctcaagtatccaatacatgtaggcgcggacgggaaagtaggtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="19653" stop="15803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19353" g_stop="19255" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19254" i_stop="18796" i_length="459">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18795" g_stop="18647" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="248" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18646" i_stop="17989" i_length="658">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17988" g_stop="17830" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="407" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17829" i_stop="16611" i_length="1219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16610" g_stop="16410" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="608" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16409" i_stop="16315" i_length="95">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16314" g_stop="16103" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="820" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E708776" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19353" e_stop="19255"/>
          <exon e_start="18795" e_stop="18647"/>
          <exon e_start="17988" e_stop="17830"/>
          <exon e_start="16610" e_stop="16410"/>
          <exon e_start="16314" e_stop="16103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAGGTCAAATTTTGATATTCTTGTTATGTTTCTGAATTGCAATATACAAGATTACACTCTGTAGCATTGCATTGATGTTGGCTTGGCTTTATATTCTTGTCCATATGTTAAGTGGAAAACCTGAATTGTTGCAACTTAATGCATTGAAACACATAGGTAAAGCTCAATAGTGCGGTCAGAATATTGTTTAGCAATAGAATATCATCTAAATGACCATTTTGTCACTTGGAATGCATCCCCATTTTAGAAATTAAATAGGATGTTGCTTCACACTTGGTAAGATTCCAAATTATGCAGCTTCCTAGAAAAAAATGAAATGGTTTTGAGATAGTGCAACCTCCTAAACAAAACTTGTAGCTCCTACATAGTTTTCCTTATATTTCTTTTTGAGATGTACTCATTTTCAGCACTCTTGAAGTTGTTACATTGCTTCCTGATTTTGTTTGATGTTCACTTGATCAGGAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATACTGGCCATAACAATAAAAAAACTGATTAGGTGATACTGGCCTCAAATAGGCAGCTATATCTAGGCAAGGATACTTTCAGAATAGAAATGCCAGCTATCTTGAAGAGTTACTGAATCCAAATATCTGAATGTACTAGTCATAAGAGTGTGCATTAGCATAAACAGTGGCCACCTCTTTCTAATATCCATAATCATGCCTATCCAAAAGAGAGAGCTTTTATTTGCTTTAATATTTGAATGAGAAAATATTCTTATCCTTTAAAATGGTACATTTCCTTCCTTAGACATGGAGGGACAAGCCAGAAAAAGGACTTTGAAAAGGGATGTTTATGGGCATTATTGTATGTATGAGGACCTGACGGAATAAAAAATGAGTGGTGATTTTGATAAAAGACACTACTTTCCATGACATATTTTCCTTCATGCCTCTCATTGTCATTATATTACTATGCAATTTTGATGATTCAATATGTGATTAACTGAATATTGAAGGAAGAAGCCATCTGAAAAAAGGTATACAAGAAGAAATGAGAAGTGTTATTTTAAGATTTTTGTTTGCTTTCAACAGAGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAGGTAATAGGGAATTTTCTGATTCTTAAAATATTCTTGTAGTGTATATACAGTGTTATACACAACATACACTTGGGAGCAGCTGAAACAAAAGCTGCCTTTTAATATTGATAAATATGGGTTCTAGAGTCTTGAAAAATGGCTGACCTTTTAACTTAAAACAATATCAATATTTCCTTAGCTCTGCTTGTTTTACGTCTCCTCAAACTCTATATTGGTCGCTCAATTGGTGAATGATTATTCAAAAGCTTGATTACACATGTTGTAGCATGCTTTACGATGGACCACTAGTTGGGGGTGGGTAAACCATTTATGATAGAGTGAGACCGACTTTAAAGGTGCAATTGAGATGAGTTCTTCAGGTGAACAGAATAGAGTTGTTTCACGAGCCACCCATAAACCTATAGTTGGATCCATGAGGAAATTCCAGTGAGGCTAACTGAAGGCTTACTCTAATTATGTCGAGAGGCTGACTGAATCCAATCATATACACCTTGAAATGAAACAAAGTTCAATTTTATCAAGTAGCTAAGTAGGCATACGAGTTAGTTTGACTTAAGAGTCTCGTCTCAATGTAGGAAGCAGACCCGCTACTCTCCCTCTGTGGCGGGTGAAAGTTCTCAAAGTGTCATATGCTATGGACTTTTGGTATTCGTGTGACCCAATAAATTTAAAGTGTTCTGTATCTGAACAGAATTATAATTGAACTTTCAAAAGGAAATCTAATTGTATTATCCAGATTCGGAATTTTGCTTGAAAAAACCGGGTATCTTAAACTTTGCTCTATATCCATGTGGCAGAGGATTTTGGGCTAGCAATATCTTTTAAGGTTTGAGGTTTAATACCTTTTTATGCAGAACCATATTTTTGCAGTACCAATATTTTTGGTCTTTCATGCTTCCGTTTAAGGTGTGAAGCAGAAGCAAAAACATGGGCCGATTGTTTGGTTACTTTGATTGCTATTTTACCTTTTCTCTTACATCATACTTACCTTCATAAGTAATGAGGAATAGGATAGAGAACAAAATAAGAATGTGGGTATTTCTAATGCATAGATTTAGGAACACCAGTGACCAAATCAACCCTCATAAAGTAAACACAATTTTATTTCGTTGTGAGTTGTCATCCTCTATGCTTTCTTGTTTTTTGTTTCATTTTGCTTATCTGAATTTGATCAAGCTTGAATACTTTTGTGAGAAGTTTTTTTTTGACGTGCAACCAGGTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAGGTTTGATAGAAAATCACATAATGCACATACTTTATCTTGAGAAGACGTTAACGAAACCGGATGCATTTATTTATTCATCTTGTCTTGATCTCCAGATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATT</genome_strand>
        <mrna_strand>CATTTATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAG...............................................................................................ATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315277" ref_strand="+" ref_description="SGN-E315277 [cTOA-24-K20]">
      <seq>tcatggatactcagccctgcttttgctgttttaaaggatagtactgcaatcccagaggatgatcctaaactacatgtatatggggaagatcattcagaaaattggcatgtacagatcttccgttccattgattctggttcagtgcagggctttcccaagacgattgacgttgcgcaggcacaggcaaggaaaccatagcctttgttctatttatgaacttttgctaaagtagctgtaataagttaggaacactaggaagaaatcttgtcttccccttgcacttcacattttctttagcgttgtatcttttgcagaaccttgtctgctcaaaaaatctgatggtagataaaagcattgaagccgcatatattcaggcaataagatcagctcagcatttcatatatattgaaaatcagtattttcttggatcgtcatatgcttgggaatcatacaaagatgcaggagctgatcatctgataccgatggaattggcactgaaaatcactagtaaaattagagctagggaacgattttgtgtatatgttgtcgtgcccatgtggcctgaaggggaccccaagtcaatcactatgcaggaaatactcttctggcaggtaattttcgtgaaactctttgattatgtnctttggattttatgaagaagctaggcagttttnaatgagcaatgattangtgatactgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="20096" stop="18255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19796" g_stop="19683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19682" i_stop="19603" i_length="80">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19602" g_stop="19255" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="462" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19254" i_stop="18796" i_length="459">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18795" g_stop="18555" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="703" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E315277" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19796" e_stop="19683"/>
          <exon e_start="19602" e_stop="19255"/>
          <exon e_start="18795" e_stop="18555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAGGTAGATCCTTTTTTTGTTTTGTGGATATCTTTGAATAACTTACATCCTTTTTAACTTTCATCCTCATTCTTTTATTGCAGATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAGGTCAAATTTTGATATTCTTGTTATGTTTCTGAATTGCAATATACAAGATTACACTCTGTAGCATTGCATTGATGTTGGCTTGGCTTTATATTCTTGTCCATATGTTAAGTGGAAAACCTGAATTGTTGCAACTTAATGCATTGAAACACATAGGTAAAGCTCAATAGTGCGGTCAGAATATTGTTTAGCAATAGAATATCATCTAAATGACCATTTTGTCACTTGGAATGCATCCCCATTTTAGAAATTAAATAGGATGTTGCTTCACACTTGGTAAGATTCCAAATTATGCAGCTTCCTAGAAAAAAATGAAATGGTTTTGAGATAGTGCAACCTCCTAAACAAAACTTGTAGCTCCTACATAGTTTTCCTTATATTTCTTTTTGAGATGTACTCATTTTCAGCACTCTTGAAGTTGTTACATTGCTTCCTGATTTTGTTTGATGTTCACTTGATCAGGAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATAC</genome_strand>
        <mrna_strand>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG................................................................................ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTNCTTTGGATTTTATGAAGAAGCTAGGCAGTTTTNAATGAGCAATGATTANGTGATACTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288786" ref_strand="+" ref_description="SGN-E288786 [cLES-17-A16]">
      <seq>tcttaggaggtctggatctctgcgatggtcgatatgatacacctgagacatcgcttattccatgaccttgacactgtatttaaagacgacgttcatcagcctacatttgctgcagggaccaaggctccaaggcaaccatggcatgatttgcattgcagaattgatggacctgctgtatatgatgtgcttataaattttgctcaacgatggaggaaagcgacaaagtggagggaattcaagttctttaagaaaacaatgactcattggcatgatgatgctatgctaaaaattgagcgtatctcatggatactcagccctgcttttgctgttttaaaggatagtactgcaatcccagaggatgatcctaaactacatgtatatggggaagatcattcagaaaattggcatgtacagatcttccgttccattgattctggttcagtgcagggctttcccaagacgattgacgttgcgcaggcacagaaccttgtctgctcaaaaaatctgatggtggataaaagcattgaagccgcatatattcaggcaataagatcagctcagcattttatatatattgaaaatcagtattttcttggatcgtcatatgctcgggaatcatacaaagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="22044" stop="18957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21744" g_stop="21635" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21634" i_stop="19986" i_length="1649">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19985" g_stop="19683" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="414" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19682" i_stop="19603" i_length="80">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19602" g_stop="19534" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="483" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19533" i_stop="19403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19402" g_stop="19257" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="629" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E288786" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21744" e_stop="21635"/>
          <exon e_start="19985" e_stop="19683"/>
          <exon e_start="19602" e_stop="19534"/>
          <exon e_start="19402" e_stop="19257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGA-ACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTCCTGTGAGTTGTTTTTCTTCTCAATTTTTTCCTAGACATTTCTGATATCTGTCATATGTCTCTGGGATGATTCTTTACTTTACATAGTTGATAGTTTTCCATAACTGTGAAGATGGTTAAGGGATCAGCACTCTCGAGTGTAGATTCACAAAAAAACATTTTTACTATTCTTGCTGATTTATTCATTTCAGTATTTTTCTTTTCTACAGTATTTTCAGCATAGGTTTTACTCTTCTATTTGTCAAATCTGTTTATGAAGCCGCTTTTCTTGAGCTGAGGGTCTATCCGTAACAACTTCTCTACCTCACACAAGGTAGGGGTAAGGTCTATCCGTAAACTTAGCATGTTGTAGTTGCTAAGTTTTTCCTTGCAGAATTTGGAACTACAATGATTGCATTCAGCAGACATTGAAACTTAGCATGTTGTAGTTGCAAATGGCTAGTGTAGTTAATGCTGGTGGGATGTTGTGGGCACTAACAACAGAATTATTATACTTAATTATCAATAGGGGTAACAGCAGATTTATCATCACATATTATTGTGACCAAGTTTTCTAGAAAGAAAGAGCTTTAGGTTTATGTAAAGTATCTAATAAATTCTTCTTCTGAAATAACAAATGTAAGCCATCTTTTCATATTTTGGGAGACAATTTGCTGCTAGATATTTAGTTAGTAGCTATTATCACTCACATAATCTAAATTTTAACAAGCGAAGGGCAGATCTGTAGTTTACAGTGGTCCAAGCTCTCAAGTATGTTGTAGTTAGTTGCGGAGGAAAGCCGGAAAACATATAATTTCTCCACTTACGTAATTGCTGTAGATGCTTTCTTCAGGAGATTTATTAGCTGTTTAAAAATGAAAGTTAAAAGGTGAATACTGAAACTTATGTCCCTGGATTCTGAATATTAACCTTTCAAACTTAAATATGGTTCTTGACATCCATAATCTTTGTAATTATTTTCCAGAAGTTTTATGAGCTTTTGATTGCTATTTCTTCTTTCATTTCTCATTATCATGATTTCTTTCCTTGGATGCATTTTTTGAAAAATTGAACTTACCTATTACTGACTCTGTATTGGTCGTGTGTTAGTCATTAGCCTTAATATAGATAAGCCTATTTCATCTCCAATGCTCAATCTGTAACATAAATCTGTTAGCAATGGAATTATTGAAAATAATTGTTCATTAACAAATAGCTGTATAATACAATATTCAAGAACTGTGATAAAATAAATTCCAAAATAAACCATGGCATAAGAAATTTTGTAGATTATTATCGATATGTTAGTGATTGATTTAATGTATTTCAGTATTGTTTGCCGTAAATATTTAGTATTTGATAGATATTGAATATTTTTTTGAATCCTAACAAGCATGTCTACCGTTATATTTTGTTTCTTCAACTTCGAACATTTTATTGCAAGTATTGAATAGGGTTAGCTAAAAAGTCCCTTAGTAACTGTGCAGGGTCTTCACCTTCTGTCTCAATTGAGATCAAGTTGAATACCAAGCCCATTTCAGCATGTTGCATGTTTACATGCGTTCTCTGACCTTTTTCTGGAACATTTTCGTTTCTTCTCGTTATTTCTGTTTTTCTCAAAAATTGATTATTCTTTTCTCTGTTTTGATTTTTTTTTTGGTCGCATGCATTAGGCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGTCTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAGGTAGATCCTTTTTTTGTTTTGTGGATATCTTTGAATAACTTACATCCTTTTTAACTTTCATCCTCATTCTTTTATTGCAGATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGC</genome_strand>
        <mrna_strand>TCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAGACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGACTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG................................................................................ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAG...................................................................................................................................AACCTTGTCTGCTCAAAAAATCTGATGGTGGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTTATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTCGGGAATCATACAAAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282448" ref_strand="+" ref_description="SGN-E282448 [cLER-18-E15]">
      <seq>ttacattgttgggtggtctgtttttcacaaagtcaagttagttcgagagcccaccaggccattgccgcgcggcggtgacttgacacttggtgaattacttaaatataagtcccaagagggggtgcgggttctgttgttagtttgggatgataaaacttcccatgataagttctttattaacacggcaggagtaatgggaactcacgacgaggaaaccaggaagttttttaagcattcctctgtaatatgcgttttgtcaccacgttatgctagcagtaagctcagccttatcaagcaacaggtagttggaaccatgtttacacaccatcagaagtgtgttctggttgatacgcaggcacctggtaataatagaaaagtaacagcattcttaggaggtctggatctctgcgatggtcgatatgatacacctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="23231" stop="21396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22931" g_stop="22748" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22747" i_stop="22477" i_length="271">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22476" g_stop="22360" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22359" i_stop="21830" i_length="530">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21829" g_stop="21696" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="435" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E282448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22931" e_stop="22748"/>
          <exon e_start="22476" e_stop="22360"/>
          <exon e_start="21829" e_stop="21696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACGGTATGGATATTTAAACTATTACTTACTGATTTCTTTGATAAACTATATTGAAGTAATTCTGGATACTTTATTGGCTGTTATTTTAAGTATGTGCTCAGATAGCTGTAAGATAAGAATATTGTGTGAGTGCTGCTAGTTGTTATTATTTTAATGGTATGCTCAATTTACATTATAATGAATTGTTTTTTCTGTTTGCTTTCAAATGACTGTCTCATTAGTTGTAGTTCTTGTTGGTCAATCTCACAGCAGTTTGAAATGGCATTGGATGCAGGCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAGGTTATCTTTCATAACCATTGACACATTTGTTAGATTATTTGTACTTTGAGATCTTCTGATCATTGAATTCTCTATGTGCCCGTGAAGTTATTGCCCCTTAAACCATGCCTTCAAATAGTTTGCTTTCAGAATCAGGCGTTCCATTTGATGGAGGGTGTTCTTTCTTATGACTTTGTAGAAAATATTCTTATAAGTTTGCGGAAGAAAGATAGGGCTTAAGGAAGAGCTTCGTCTCAGCAGAAAAAACATAAATATGAATGCTTGCCTTCTGTGGCTTGACAAAATATTTTCATGAATGAGTGGAATAAAGTAATATAATTCTTCTAGAGCAGCAGTACTTGAAGTTTTAATGGGATGTGTGAAGCTATATTTTGTATGGTCGGCATAAATATTCCCTTCTGAGAGTTTCTTCAATCCTTTTATGAAATATAATATCAATTACGCCAATTTCCTTACCTCTGGATTCTTTATTTCCCCTCTACCAATATTGCAATGAAGTGATTTTGTGAGCTGAATATTCTTGCTTCCAGGTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACA</genome_strand>
        <mrna_strand>TTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACG...............................................................................................................................................................................................................................................................................GCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244982" ref_strand="+" ref_description="SGN-E244982 [cLEF-2-J17]">
      <seq>cattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctcacgttagcgataagtttaagctgccggaaatccagttggaaaacaatacaacctttgaacacaacaaatgctgggaagatatatgttatgcaattacagaggctcatcacttgatttacattgctgggtggactgtatttcacatagtcaagttagtttgagagcccaccaggccattgccgcgcggcggtgacttgacacttggtgaattacttaaatataagtcccaaaaaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="23531" stop="22510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23231" g_stop="22809" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E244982" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23231" e_stop="22809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGT</genome_strand>
        <mrna_strand>CATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGCTGGGTGGACTGTATTTCACATAGTCAAGTTAGTTTGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAAAAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328278" ref_strand="+" ref_description="SGN-E328278 [cTOC-21-D18]">
      <seq>aaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctcacgttagcgataagtttaagctgccggaaatccagttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="24003" stop="22705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23703" g_stop="23005" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E328278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23703" e_stop="23005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAA</genome_strand>
        <mrna_strand>AAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736922" ref_strand="+" ref_description="SGN-E736922 [LC07DC05]">
      <seq>cgctatggtgtcacctgttcggagtcgtaaaatctcagcaaaagccaacaacttacagttattcatcacaacgtgacgccacccatttttctcttctatcttcaaacacaacctttcttcttcttctctgtgaagatggcagaaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="24145" stop="22747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23845" g_stop="23047" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E736922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23845" e_stop="23047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTC</genome_strand>
        <mrna_strand>CGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740294" ref_strand="+" ref_description="SGN-E740294 [LC20DD05]">
      <seq>acctccaccgctatggtgtcacctgttcggagtcgtaaaatctcagcaaaagccaacaacttacagttattcatcacaacgtgacgccacccatttttctcttctatcttcaaacacaacctttcttcttcttctctgtgaagatggcagaaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="24153" stop="22872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23853" g_stop="23172" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E740294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23853" e_stop="23172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATT</genome_strand>
        <mrna_strand>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279310" ref_strand="+" ref_description="SGN-E279310 [cLEL-4-L11](-)">
      <seq>atcccaaacagggttttgtgaattgggtataacacgtgtacgagcaagagcggtatggggtgcacacacagcaacatatgggtcactagtgattatactccggtggtggattttctggtcggtgcttttcacattgggtagttcgccgtttccgtcgtcggcagtggatccagtttgaggtttccggcagacatcacaggctgtgaagcagcggcgtatacgctcagaagttaagtccatgttgggtaaatgacgggcttgaatgatgtgaagctccaaatctccatgtaaacagatgaagttttcctgagatgaattttctgccatcttcacagagaagaagaagaaaggttgtgtttgaagatagaagagagaaatgggtggcgtcacgttgtgatgaataactgtaagttgttggcttttgctgagattttacgactccgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="23084" stop="24134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23384" g_stop="23833" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E279310" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23384" e_stop="23833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAAAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGAACAGGT</genome_strand>
        <mrna_strand>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAGAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229673" ref_strand="+" ref_description="SGN-E229673 [cLEL-4-O9](-)">
      <seq>gcccagattatagtcccagttctccccagtacagtccaagtgcagggtactcagcaagtgctcctgggtattcaccatcatctactagtcagtacaccccacgtgtgagtgagagagacaacagaagtgtcaaagatgacaaggctgggtgatcattagggagggaacgaagttgtatttacttgaaactttaatctttcagttgctaaactggctcattagtcattactgtgctttctgaaggcataagattgctgtataatatttttcgaagaacacaggctttgttctagtttctgggtttctcttttccagtctagaatactttgggattatattatataaagatgcagaaaacatggttccttcttttaaagtagtgtgagaacttaggtgttttcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="26785" stop="25696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26485" g_stop="26452" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26451" i_stop="26376" i_length="76">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26375" g_stop="25997" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="413" r_length="379" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E229673" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26485" e_stop="26452"/>
          <exon e_start="26375" e_stop="25997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAATAAAGGAAA</genome_strand>
        <mrna_strand>GCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCAGGGTACTCAGCAAGTGCTCCTGGGTATTCACCATCATCTACTAGTCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706713" ref_strand="+" ref_description="SGN-E706713 [FA30CH07]">
      <seq>ccaggatacagtcccacttcccccggttatagccccacatctcctggttacagccccacttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattctccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctatagcccaacctcgcctagctacagcccaacatcacctagctacagccctacttctccagcgtacagccccacttctccggcctacagccctacttctccggcctacagccccacttctccatcttacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcgccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgacttctcctgcttacagtcctacctcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtccaacatcaccaagttacaatccctcggcgagatacagcccctcccttgcgtattcgccaactagcccgaagctgtctccttctagtccatacagcccgtcatctccaagttacagtcccacatcaccatcgtactctccaacatctccatcatattctccttcaagcccaacctatagtcccagcagcccatacaacaactcaggtacaagcccagattatagtcccagttctccccagtacagtccaagtgcagggtactcaccaagtgctcctgggtattcaccatcatctactagccagtacaccccacgtgtgagtgagagagaacacagaagtgtcnaagatgacaaggctgggtgatcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="27939" stop="25951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27639" g_stop="27029" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27028" i_stop="26763" i_length="266">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26762" g_stop="26691" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="683" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26690" i_stop="26509" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26508" g_stop="26452" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="740" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26451" i_stop="26376" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26375" g_stop="26251" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="865" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E706713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27639" e_stop="27029"/>
          <exon e_start="26762" e_stop="26691"/>
          <exon e_start="26508" e_stop="26452"/>
          <exon e_start="26375" e_stop="26251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAGGTAAACAACCTTGGTTTGATACATGTGTCTTTGATTCTTCTGCTGAGACAGGAAAGGTTTTTAAGTTTGTTCTGTTTGATAATAATGCAGCGACTTGGTAGCGCCTTAATCTTCTTAATTAGGTCACTTTACCTAAACTTATATCTAGTTTTAGCTTCATAATAACTAGTTAGTTTCTGAAGTTGTCGGGTTTTTGTATTGGTGGATTTCAGATCGGTTCTAGATATATTACTAATGATGTGATTAAATGTTGTCTGTGTTTGCAGTCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAGGTAAGTGATGTGCATGGGTTCCTTTATTTGATTTACTGCCTGAAAGCTTTCTGGAACTTATATTGTTGGAGGGTGACCTCCTTTTTAGTTTCAATGTGTCTTAGCTGCATGTTGAATTTAATGAGCACTATTAGCTGATCTTTTTTGAAATAATTCTCTTTTTTTTGCCCCTCCAAAATCAGCCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAG</genome_strand>
        <mrna_strand>CCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG..........................................................................................................................................................................................................................................................................TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG......................................................................................................................................................................................CCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGAACACAGAAGTGTCNAAGATGACAAGGCTGGGTGATCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700943" ref_strand="+" ref_description="SGN-E700943 [FA14CD08]">
      <seq>gttcattgtatctcaatgaggagatgttgaaacaagctattgagataccattacctagctacatggaaggtggtcttgaatttggcatgacacctggacgttcacctatcagtggaaccccatatcacgatggaatgatgtctccaaattatttgctcagcccaaatatgcggatgtcaccgattacagatgctcaattttctccgtatgtgggtggcatggctttctctcccacttcatcccctggttacagtccatcatcccctggttacagcccatcatcccctggttacagcccgacctctccaggatacagtcccacttcccccggttatagccccacatctcctggttacagccccacttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattctccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctatagcccaacctcgcctagctacagcccaacatcacctagctacagccctacttctccagcgtacagccccacttctccggcctacagccctacttctccggcctacagccccacttctccatcttacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcgccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgacttctcctgcttacagtcctacctcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtccaacatcaccaagttacaatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="28244" stop="26820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27944" g_stop="27120" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E700943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27944" e_stop="27120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCT</genome_strand>
        <mrna_strand>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315833" ref_strand="+" ref_description="SGN-E315833 [cTOA-26-A17]">
      <seq>acaattcttggcctcttcctgttaacattcagaggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttgctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggcttttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccaggagagatgattggctgtgttgctgcacagtctattggtgaacctgccacacagatgactcttaatacatttcattatgctggtgtgagtgccaagaatgttactcttggtgtgccaaggttgagggagatcatcaatgttgccaagaaaatcaaaacaccttctctttctgtgtacttaaaacctgaggtaggcaaaacaaaagagagggccaaaactgtccagtgtgcgttagaatataccactttgcggagtgttactcaagccacagaagtgtggtatgatcctgatcctatgagcacccttattgaagaagatgttgaatttgtcaagtcatactatgaaatgccagatgaagagattgaccctgacaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="29714" stop="28408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29414" g_stop="28708" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E315833" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29414" e_stop="28708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAGGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</genome_strand>
        <mrna_strand>ACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAAGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745079" ref_strand="+" ref_description="SGN-E745079 [GI|68300818]">
      <seq>gctacacaaagatcaggtagacctattaaatcaatatgtagtagattaaaatcaaaggaaggtcggatcagaggcaatctgatgggtaaaagagtagacttttctgctcggactgtgattacccccgatccaactattaacattgatcaattgggagtcccatggagtattgctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggaacttgttgaatatggacctcatccacctcctggtaaaaccggggccaagtatataattagggacgacggccaaaggcttgatcttcgatacttgaagaagagcagcgatcaacaccttgaactaggatataaggttgagaggcacttaaatgatggagattttgttctcttcaatcggcaacccagtctacataaaatgtctattatgggacataggattaagatcatgccatactcaactttccgcttgaatttatctgtcacttctccttacaatgctgattttgatggtgacgaaatgaacatgcatgttccacagtcgtttgaaaccagagcagaggttctggagcttatgatggtccctaagtgtattgtttcaccccaggcaaataggcctgtaatgggtatcgtccaggatacccttttaggttgccgcaaagttactaaaagagatacctttatagaaaaggatgtctttatgaacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaaccaaggccactttggactggaaagcaagtgtttaacctcatcataccaaaacaaataaatcttttaagatactccgtatggcataatgactccgaaaaaggatacataactcctggagatactcaagttagaatagagaaaggggagttgctatctggtactctttgcaaaaagacccttgggacgtccaccggaagtctgattcatgttatatgganagaggttgggcctgatgctgctcgnaagtttttgggacatacacagtggcttgttaattattggcttcttcagcaagcttttagcatcgggataggagatacaattgctgatgcttcaacgatggagaaaattaatgaaactatctcgaatgcaaaagccaaagtcaaagaacttattaaagctgctcaggagaagctgttagaagctgaaccagggcgaactatgatggaatcatttgagaacagagtgaaccaggtgttaaataaggctcgtgatgatgctggaagcagtgcagagaagagtttatcagagagcaataatcttaaagctatggttactgctggatcgaagggaagttttatcaacatatctcaaatgactgcctgtgtggggcaacagaatgttgaaggaaaacgtattccatttggtttcatagaccgtactcttcctcattttaccaaagatgattatggtccggaaagtcgtggttttgtagagaattcatatctccggggactgaccccgcaagagttcttcttccatgctatgggtggtagagaaggtctgattgatactgctgtgaaaacttctgagaccgggtacattcagaggcggttagtgaaggccatggaggatatcatggtcaagtatgacggcactgttaggaattcattgggggatgtaatccagtttctgtatggggaagatgggatggattctgtttggattgagacacagaagctggattctctgaaagcaaagaaaggaacatttgatgacatgtatgcatatgagatcgatgatcctaactggaacccaagttacatgttgccagaagctgtcgaagatttaaaaggtattcgggagattcgtagtgtgtttgatgcggaggtccagaaacttgaagctgatagacatcagcttgggacagagattgctgtaacgggtgacaattcttggcctcttcctgttaacattcagaggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttgctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggcttttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccaggagagatgattggctgtgttgctgcacagtctattggtgaacctgccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="32305" stop="28735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32005" g_stop="31785" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31784" i_stop="31672" i_length="113">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31671" g_stop="31530" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="363" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31529" i_stop="31449" i_length="81">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31448" g_stop="31113" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="699" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31112" i_stop="31022" i_length="91">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31021" g_stop="30735" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="986" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30734" i_stop="30452" i_length="283">
            <donor d_prob="0.463" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30451" g_stop="30193" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="987" r_stop="1245" r_length="259" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30192" i_stop="30109" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30108" g_stop="29035" g_length="1074"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="2319" r_length="1074" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E745079" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32005" e_stop="31785"/>
          <exon e_start="31671" e_stop="31530"/>
          <exon e_start="31448" e_stop="31113"/>
          <exon e_start="31021" e_stop="30735"/>
          <exon e_start="30451" e_stop="30193"/>
          <exon e_start="30108" e_stop="29035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAGGTGTTTTTTTGTTGTTGTAAAAATGAAACCCCACACTTATCAAATCATTTGAAACAAGAAGGAAAATTGAACTGTATATGTTTGTGCTGATTGAAGCTGGGGTTTTCACACAGGTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAGGTTTGTTTCTTTCAGTTCCAAGTAATTGAGGGGCTTTTGATGTCTGTGGTAGCTCCGTAACAGCCAATGCTGCCTATGCAGGTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAGGTGAATCTGCATGTGCCATTTCATAATTCTTTATCAAATATTTCATGATTTTGCATGATCTAGTAAAGAATGCTTATTTTTTGGCTTGCAGGATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATGGTATGCATTTTCAGAATTTTGTATTTCTACCCCCCCCCCCCCCCGCCATCTTGATTGCATGCACAAAAGGGCTGGCTTTGTGTCGAATCCTAAACACTTTTATGGACAATAACCGTCTTGTGTGCGGGGCTTGCTTTCCTCCTCCTGTTTATCTGCGGATGCTGTCATTAGTTAAATGCCAGGTGGATGAGATGATAGCTGCAAAACATGGGCTTTATAATTATGTTACCGTAAGCAGAGTCATTGTCATTTTTCCTGTAGTTAACTTTGCCTCTGCAAACAGGGAGGAGGTTGGGCCTGATGCTGCTCGGAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAAGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAGGTACTTTTTGTAAATGGACATCCATCTTTTCCTGTTCCTTTTGCTTGATGACTTCTTTTAATAATGTTTTTGTTGTAATCTTAGGTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACA</genome_strand>
        <mrna_strand>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAG.................................................................................................................GTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAG.................................................................................GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAG...........................................................................................GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGTATGGCATAATGACTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATG...........................................................................................................................................................................................................................................................................................GARAGAGGTTGGGCCTGATGCTGCTCGNAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAGGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAG....................................................................................GTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549902" ref_strand="+" ref_description="SGN-E549902 [TUS-6-B23]">
      <seq>atacaatcatcaccttgaactaggatataaggttgagaggcacttaaatgatggagattttgttctcttcaatcggcaacccagtctacataaaatgtctattatgggacataagattaagatcatgccatactcaactttctgcttgaatttatctttcatttctttcttacaatgctgattttgatggtgacgaaatgaacatgcatgttccacagtcatttgaaaccagagcataggtgctggagcttatgatggtccctaagtgtattgtttcaccccaggcaaactgtaattggtatcgtccaggatacccttttaggttgccgcgaagttattaaaagagatatctttatagaaaaggatgtctttatgaacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaaccaaggccacattggactggaaagcaagtgtttaacctcatcataccaaaacaaataaatcttttaagatattctgcatggcataatgattcagagaaaggatacataactcctggaaatactcaagttataatagagaaaggggagttgctatctggtactctttgcaaaagactcttgggacgtctgcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="31857" stop="30462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31560" g_stop="31530" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31529" i_stop="31449" i_length="81">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31448" g_stop="31113" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="363" r_length="332" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31112" i_stop="31022" i_length="91">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31021" g_stop="30753" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="631" r_length="268" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E549902" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31560" e_stop="31530"/>
          <exon e_start="31448" e_stop="31113"/>
          <exon e_start="31021" e_stop="30753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATCAACACCTTGAACTAGGATATAAGGTTTGTTTCTTTCAGTTCCAAGTAATTGAGGGGCTTTTGATGTCTGTGGTAGCTCCGTAACAGCCAATGCTGCCTATGCAGGTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTC-TCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAGGTGAATCTGCATGTGCCATTTCATAATTCTTTATCAAATATTTCATGATTTTGCATGATCTAGTAAAGAATGCTTATTTTTTGGCTTGCAGGATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAG</genome_strand>
        <mrna_strand>ATACAATCATCACCTTGAACTAGGATATAAG.................................................................................GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAAGATTAAGATCATGCCATACTCAACTTTCTGCTTGAATTTATCTTTCATTTCTTTCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCATTTGAAACCAGAGCATAGGTGCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGC-AA-A---CTGTAATTGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCGAAGTTATTAAAAGAGATATCTTTATAGAAAAG...........................................................................................GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACATTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATATTCTGCATGGCATAATGATTCAGAGAAAGGATACATAACTCCTGGAAATACTCAAGTTATAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGC-AAAAGACTCTTGGGACGTCTGCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340783" ref_strand="+" ref_description="SGN-E340783 [cTOF-5-I4]">
      <seq>ctgagaggagacgaaagaagcgaaaaccagatctgtactgaacaagtgaaattgactgaagaatggagtcttaaaatagaaacttacatatagattaatcaaaaccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcatggtgagactacggagttgagcgatcctcgacttgggacgattgatcggaagatgaagtgtaagacgtgtatggcgaacatggctgatgtccggggcattttggtcaccttgagcttgcgaaacctatgtttcatataggttttatggaacctgttcttagtatccttcggtgtgtctgcttcaattgctccaaaattctggcggatgaggacaatcccaagttcaaacaagccatgagaatcangaatcctaaaaacaggcttagaaagatgttggatgcttgcaagaacaaaacanaatgtgaaggangggatgaagttgatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34824" stop="32529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34526" g_stop="34246" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34245" i_stop="34154" i_length="92">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34153" g_stop="33890" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="520" r_length="239" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33889" i_stop="32948" i_length="942">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32947" g_stop="32829" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="639" r_length="119" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E340783" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34526" e_stop="34246"/>
          <exon e_start="34153" e_stop="33890"/>
          <exon e_start="32947" e_stop="32829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAGGGGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTCTCGAATTCTCTAGGGTTTAAATTGATTTGGTTTTTGTAACTTGGTTTTTTGACGTAATTGCAGAGACAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGAGAGGGAAACCAAAGCCTGGAGGGTTGAGCGATCCTCGGCTTGGGACGATTGATCGGAAGATGAAGTGTGAGACGTGTATGGCGAACATGGCTGAATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGGTTTATGAAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAGGTACTTTGATTGACTTGAATTGTTAGGTTAAAAGTTTGTGTACAGTGAAATTGTCTTCTTTGTCCTTTTTCTTGGTTTAAGAAGGATTGAATTACTGATCATATATTTTTCACTACCTGGTGTGATGTTCATGATGTCAATTAAATTATAAGTGGGTAAACCATTAACATTTGGAGGTTTCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCATTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTACATTTCCTTGCGCTTTCACTGAAGAATGAAGAGGAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTGTCTCTATGCATTATTTCTGATACTCAATGCAGCTTTGGGTTGGATAATTGAATCTGTGGGTCTTCCGATTTTGTGCAGGACGATCCTAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGGAGGGGATGAAATTGATGTACA</genome_strand>
        <mrna_strand>CTGAGAGGAGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT............................................................................................AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACT-------------------A--C-GGA--GTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTG-ATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCCCAAGTTCAAACAAGCCATGAGAATCANGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACANAATGTGAAGGANGGGATGAAGTTGATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236454" ref_strand="+" ref_description="SGN-E236454 [cLED-13-N1]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagctcaggattagaagataaatgttctgaagctcccgagtctaatatccattcactagacttgattgaaataaagagtagtcaaactcactccattttgattgtttattcaacggtgagaatcggattataatttatgtatagaggtgattctaaaattagacaacacttaatggtcttgctacatttccttacggtttcacggtttcactgatgaatgaaagggaaaaaaaacttggtctaatcttgacgtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34010" stop="32745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33710" g_stop="33108" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E236454" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33710" e_stop="33108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTT---CG-A--A-G--AA-T--CAT-G--A--A------AAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378095" ref_strand="+" ref_description="SGN-E378095 [TUS-21-D14]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagctcaggattagaagataaatgttctgaagctcccgagtctaatatccattcactagacttgattgaaataaagagtagtcaaactcactccattttgattgtttattcaacggtgagaatcggattataatttatgtatagaggtgattctaaaattagacaacacttaatggtcttgctacattttcttatcgtttcacggttttactgttgaatgaaggggaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34010" stop="32800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33710" g_stop="33108" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E378095" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33710" e_stop="33108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTT---CG-A--A-G--AA-T--CAT-G--A--A------AAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227034" ref_strand="+" ref_description="SGN-E227034 [cLED-1-J20]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34010" stop="33030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33710" g_stop="33328" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E227034" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33710" e_stop="33328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACA</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233379" ref_strand="+" ref_description="SGN-E233379 [cLED-9-K12]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34010" stop="32988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33710" g_stop="33335" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E233379" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33710" e_stop="33335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAA</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349170" ref_strand="+" ref_description="SGN-E349170 [cTOS-2-A4]">
      <seq>aattttggagcaattgaagcagacacaccgaaggatactaagaacaggttccataaaacctatatgaaacataggtttcgcaagctcaaggtgaccaaaatgccccggacatcagccatgttcgccatacacgtcttacacttcatcttccgatcaatcgtcccaagtcgaggatcgctcaactccgtagtctcaccatgctcaatgtgcaccacagacatttatctctggaaacgaagaaacaaaaactaaatcaaatttaaaccctagagaattcaacaaaatgaatcaagattagtgaaaattacaatttcgtcggcgctgacaatgccgaactggaccgtccggaccttggcaacctccgccggctagaaggggaagcgcaaatccatggtggcgcaacctaggttacacctctacagaagaaatttatacagtagaataattattttgtttttttttcgaacaagatagataacagagggttttgattaatctatatgtaagtttctattttaagactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="33602" stop="34763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33902" g_stop="34462" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E349170" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.051" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33902" e_stop="34462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCC</genome_strand>
        <mrna_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACA-TCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTC-A------A-----------------CTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAA--ACG--AAGAAA-CAA-AAAC-TAAATC--A--AATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352610" ref_strand="+" ref_description="SGN-E352610 [cTOS-9-N8]">
      <seq>aattttggagcaattgaagcagacacaccgaaggatactaagaacaggttccataaaacctatatgaaacataggtttcgcaagctcaaggtgaccaaaatgccccggacatcagccatgttcgccatacacgtcttacacttcatcttccgatcaatcgtcccaagtcgaggatcgctcaactccgtagtctcaccatgctcaatgtgcaccacagacatttatctctggaaacgaagaaacaaaaactaaatcaaatttaaaccctagagaattcaacaaaatgaatcaagattagtgaaaattacaatttcgtcggcgctgacaatgccgaactggaccgtccggaccttggcaacctccgccggctagaaggggaagcgcaaatccatggtggcgcaacctaggttacacctctacagaagaaatttatacagtagaataattattttgtttttttttcgaacaagatagataacagagggttttgattaatctatatgtaagtttctattttaagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="33602" stop="34760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33902" g_stop="34460" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E352610" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.069" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33902" e_stop="34460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACT</genome_strand>
        <mrna_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACA-TCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTC-A------A-----------------CTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAA--ACG--AAGAAA-CAA-AAAC-TAAATC--A--AATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323903" ref_strand="+" ref_description="SGN-E323903 [cTOC-3-G15]">
      <seq>acgaaagaagcgaaaaccagatctgtactgaacaagtgaaattgactgaagaatggagtcttaaaatagaaacttacatatagattaatcaaaaccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="34816" stop="33824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34516" g_stop="34246" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34245" i_stop="34154" i_length="92">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34153" g_stop="34124" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="301" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E323903" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34516" e_stop="34246"/>
          <exon e_start="34153" e_stop="34124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTCTCGAATTCTCTAGGGTTTAAATTGATTTGGTTTTTGTAACTTGGTTTTTTGACGTAATTGCAGAGACAAATGTCTGTGGTGCACATTGAGCAT</genome_strand>
        <mrna_strand>ACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT............................................................................................AGATAAATGTCTGTGGTGCACATTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323096" ref_strand="+" ref_description="SGN-E323096 [cTOB-28-O4]">
      <seq>gccttcccaaattcacggagaacgcggttttgaacccgattcatcttccccaaatttttctcttcataaaaaccccttaccacaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatggtctttttttttagatggtgaaggttgtatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39379" stop="40524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39679" g_stop="40224" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E323096" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39679" e_stop="40224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATT</genome_strand>
        <mrna_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGGTCTTTTTTTTTAGATGGTGAAGGTTGTATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310057" ref_strand="+" ref_description="SGN-E310057 [cLEZ-8-C8]">
      <seq>atcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39463" stop="40569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39763" g_stop="40268" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E310057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39763" e_stop="40268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTAC</genome_strand>
        <mrna_strand>ATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281171" ref_strand="+" ref_description="SGN-E281171 [cLER-7-F14]">
      <seq>gcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39514" stop="40499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39814" g_stop="40199" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E281171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39814" e_stop="40199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTT</genome_strand>
        <mrna_strand>GCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349535" ref_strand="+" ref_description="SGN-E349535 [cTOS-1-I14]">
      <seq>aatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacattttgttggttttgtgagctgtttcatattttgtgtaaatatttatactggatcaataaagactcaccttttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39516" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39816" g_stop="40345" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="540"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E349535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39816" e_stop="40345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</genome_strand>
        <mrna_strand>AATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740230" ref_strand="+" ref_description="SGN-E740230 [LC20CD08]">
      <seq>cattccgctcctatgcaatagctcgcaaaccacataggagaggtaacctgcacaaggtaagcttggtgcgacgagctcgacccagaaggcaaaccccttgctttcgctggcaaggggtttcgaatttgagacctccaacatggaagtcccaagctcaaaccactgggccaccctgaagggtaactgttggccttgcaaaattattagtcatcttatctgcaattcagatttaattataagccaactgatggaggtcaaagatccgtaatgtttttgcttaccataaatctgtaaattaagttttgcctcgtagtctgcagtttcataagttgttgaggagctggttctccctttcacaatggggaaatcttttatatatttgtcttaattataaacatcaagctcaaacatgtgtcatttggtatgtttgatctgagaaaagaaacatttcatcagccaattcccagtacaataatggatcttctccgagatagaatagtggggagttgggcaggaagtaagataaaaattctagcaaggttgatcttagtagttgtaacttaatgatcctggtgcagacatgtgctgagataatcagttatcatgatcatggctggacaagattcatcttgaagttctgtttccttttaatttatgtatatctttctctttgagaagcaggctttacttaggtttcttgatcaaagggattgtgcataatgtccattggccactgctacattcataaatttctgacatcagtatcattcctaccattctaacccccctgataatgagttcgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="41228" stop="42630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41524" g_stop="42330" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E740230" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41524" e_stop="42330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCACTGATAATGAGTTCGTCTTC</genome_strand>
        <mrna_strand>CATTCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCCCTGATAATGAGTTCGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330365" ref_strand="+" ref_description="SGN-E330365 [cTOD-4-E7]">
      <seq>ttctttctcatttttaaagtttaagccatcaaaagtatgttcagtcaaatcatacaatttataacttactactgtacaacttctccatctcagaatagaaatagaaagtattgagtgctaaactttctgtgtatcctcctaataagaattccttagaaagtcaaattgttccagtgggtcaattattgttgtttgaagaacgatctagtaccactactaatacaacaacatacttagaggtcgtttggtagagtatataagtataatgctaaatagagtgtatagtaatgcatgtattagttatgtttgcattaattatacataaattattttaatgcattatttggtttgatgcatttaaaatagtatgtattgcattaaaaaattatttacaaatatacccttctcttttattgtggaaattggtaaacatgtttaaaaaaaatgttttgagggacaattgagtcttttatcattttaatgcatgtattaaaatcattgcatggttaatacctaaatattcatggtattaataatgcacaccttaatacacaatcattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="42770" stop="43931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43070" g_stop="43631" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E330365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43070" e_stop="43631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCATTTTTAAAGTTTAGGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAG-ATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</genome_strand>
        <mrna_strand>TTCTTTCTCATTTTTAAAGTTTAAGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAGAATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326805" ref_strand="+" ref_description="SGN-E326805 [cTOC-25-O24]">
      <seq>gcttacgctactctgcgttaaaatcaaccatgagtgcgatctttattgtttttaatctccctttcttcctcatcgacccaatctatgcaccagtgtaatctgaaccgtcatgatgaatatagaaattgtaccagataggagttttgaccgtaaaaattgagaatgtagttatcaagaatcagccattccaatattactagttgaattgtgggattatttcaatctaacaccgcgtaagtaagaatgtttggtgttcatttctatgatttcatttcagtgactgctcaaggttggtttttgtaattctggcaagatgtgctgacaacttactgtgtgagaggatgaggataagataagatctcgacaattgaatagaagaaaataatcttttcagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaaatattattgggaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="43677" stop="45707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43977" g_stop="44370" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44371" i_stop="45000" i_length="630">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45001" g_stop="45407" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="801" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E326805" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43977" e_stop="44370"/>
          <exon e_start="45001" e_stop="45407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAGGTGTGTAGTAAAATTTTGAAGTAACACATATTGTCCACTATAGCCGTCAAAAGTATCCATCCAATATCATTTTTAGCAATGCACTTGCGATGGAAACTATGTTGCTTTTTGGGAAAGAAACTTTTATCACGACACACAAAAAAACAGAGACAAGGGTGGTGGTTAACTGATGATGCCCCACCAAATTGCTGACATAAGGATAAATTATAATGACAGGCCGTTTTCTAATTTCTTAGTTAATTATGCAAGTGGCTTAAAGGTCTTCCATCATGGTCATATTCTATTGTCATTTATCGTAAATATATATCCGCAAGTTTGCCATAATCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</genome_strand>
        <mrna_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAAATATTATTGGGAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274429" ref_strand="+" ref_description="SGN-E274429 [cLEN-19-G3]">
      <seq>tcaagcataaagactccttcacagttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactgtgtgtattccttgaaggtggatgatgatgacatggagaacgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44395" stop="46470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44695" g_stop="44808" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44809" i_stop="45000" i_length="192">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45001" g_stop="45252" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="366" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46105" g_stop="46170" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="432" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E274429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44695" e_stop="44808"/>
          <exon e_start="45001" e_stop="45252"/>
          <exon e_start="46105" e_stop="46170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</genome_strand>
        <mrna_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTGTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541800" ref_strand="+" ref_description="SGN-E541800 [TUS-62-M11]">
      <seq>gttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaatcacacaatatgactctgcaactttttcatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44418" stop="45774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44718" g_stop="45474" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E541800" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44718" e_stop="45474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTT</genome_strand>
        <mrna_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTC-AAATCACACAATATGACTCTGCAACTTTTTCATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299879" ref_strand="+" ref_description="SGN-E299879 [cLEW-1-M24]">
      <seq>ttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44419" stop="45619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44719" g_stop="45319" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E299879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44719" e_stop="45319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</genome_strand>
        <mrna_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545629" ref_strand="+" ref_description="SGN-E545629 [TUS-68-J6]">
      <seq>caagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacgnttccacttatattccgcaactatattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44442" stop="46724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44742" g_stop="45252" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="642" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46424" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="735" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E545629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44742" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTA</genome_strand>
        <mrna_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGNTTCCACTTATATTCCGCAACTATATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311326" ref_strand="+" ref_description="SGN-E311326 [cLEZ-18-K21]">
      <seq>gtatcaacaatatctgcagcatagctttatgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggagcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44445" stop="45492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44745" g_stop="45192" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E311326" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44745" e_stop="45192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</genome_strand>
        <mrna_strand>GTATCAACAATATCTGCAGCATAGCTTTATGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGAGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549238" ref_strand="+" ref_description="SGN-E549238 [TUS-68-J6](-)">
      <seq>caacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgttccagcaacttcaaccaaccccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44628" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44928" g_stop="45252" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="457" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46689" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="815" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E549238" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44928" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGC-ACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCA</genome_strand>
        <mrna_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGTTCCAGCAACTTCAACCAACCCCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549137" ref_strand="+" ref_description="SGN-E549137 [TUS-67-K8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttatgtaatgggggttgtgaactactctgctgcacctggggtagaaattactgttaataaatatggttctatttatgtagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44701" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45001" g_stop="45252" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46681" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="732" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="746"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E549137" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45001" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATGTAATGGGGGTTGTGAACTACTCTGCTGCACCTGGGGTAGAAATTACTGTTAATAAAT-ATGGTTCTATTTATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544973" ref_strand="+" ref_description="SGN-E544973 [TUS-67-J8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44701" stop="46801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45001" g_stop="45252" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46501" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="553" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E544973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45001" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308976" ref_strand="+" ref_description="SGN-E308976 [cLEY-23-D13]">
      <seq>aagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgggcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44702" stop="46934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45002" g_stop="45252" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="382" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46634" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="685" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E308976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45002" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</genome_strand>
        <mrna_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGGGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716230" ref_strand="+" ref_description="SGN-E716230 [FB16BH07]">
      <seq>gttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44710" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45010" g_stop="45252" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="374" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46690" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="733" r_length="359" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E716230" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45010" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</genome_strand>
        <mrna_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545014" ref_strand="+" ref_description="SGN-E545014 [TUS-67-K8](-)">
      <seq>accaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44796" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45096" g_stop="45252" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46105" g_stop="46235" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="288" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46332" g_stop="46681" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="638" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="656"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E545014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45096" e_stop="45252"/>
          <exon e_start="46105" e_stop="46235"/>
          <exon e_start="46332" e_stop="46681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338335" ref_strand="+" ref_description="SGN-E338335 [cTOE-13-B10]">
      <seq>tttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataataggtaattgatggacaactaccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44809" stop="45898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45109" g_stop="45598" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E338335" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45109" e_stop="45598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATAC</genome_strand>
        <mrna_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGGTAATTGATGGACAACTACCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277034" ref_strand="+" ref_description="SGN-E277034 [cLEN-22-I16]">
      <seq>ctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataatagttaattgatggacaactaccatacttctatgcccataagcaaaagcttattattatatatacatggtccctataggctactatacaaagatgattaaaaaaatgttttggatgaagatccattgttattttctgtctcattatgaatataatataagttaaaagagattcataagttgcacttggtgataaatataacaaatgacagtgacctagcttttccttatctcactgctaatttgtagaaactgtgaagattaatctggaacttgtactattaaagattgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="44949" stop="46219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45249" g_stop="45919" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E277034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45249" e_stop="45919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</genome_strand>
        <mrna_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541797" ref_strand="+" ref_description="SGN-E541797 [TUS-62-M11](-)">
      <seq>ttgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatgtacaaatagcatcccatctcctgatcgatagggggaaatacttatttttctcgaggataccttgtgaagtgtgatgtttgattgtgagaaagcatagaaaaaaatgatgattccattattatagtagttgatttggattccattatttcgaattaacttgcttacatattgttggttttgttaaggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="45558" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45858" g_stop="46235" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46332" g_stop="46677" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="724" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="735"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E541797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45858" e_stop="46235"/>
          <exon e_start="46332" e_stop="46677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</genome_strand>
        <mrna_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544972" ref_strand="+" ref_description="SGN-E544972 [TUS-67-J8](-)">
      <seq>aggaatacaaatactttgtgtatccctgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="45809" stop="46984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46109" g_stop="46235" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46332" g_stop="46681" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="476" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E544972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46109" e_stop="46235"/>
          <exon e_start="46332" e_stop="46681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>AGGAATACAAATACTTTGTGTA-TCCCTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716390" ref_strand="+" ref_description="SGN-E716390 [FB16DF10]">
      <seq>cttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="45834" stop="46975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46134" g_stop="46235" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46332" g_stop="46674" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="445" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="462"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E716390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46134" e_stop="46235"/>
          <exon e_start="46332" e_stop="46674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATT</genome_strand>
        <mrna_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302382" ref_strand="+" ref_description="SGN-E302382 [cLEW-27-B1]">
      <seq>attagtcaaaattttaaaacccactgtttccatttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48256" stop="49873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48556" g_stop="48870" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="403" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="501" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E302382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48556" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</genome_strand>
        <mrna_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273507" ref_strand="+" ref_description="SGN-E273507 [cLEN-3-P16]">
      <seq>tttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaactcaaagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48288" stop="51279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48588" g_stop="48870" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="371" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="469" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="570" r_length="101" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50910" g_stop="50979" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="640" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E273507" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48588" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50910" e_stop="50979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAAC-C--AGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</genome_strand>
        <mrna_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACTCAAAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334157" ref_strand="+" ref_description="SGN-E334157 [cTOD-21-G16]">
      <seq>tttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttacactaaaaatgggggtcaacgcattgcgacggttttatgtacttgtcagatgttgatgaaggggggcgaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggatgaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48292" stop="51504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48592" g_stop="48870" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="367" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="465" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="563" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50910" g_stop="51039" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="691" r_length="128" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81">
            <donor d_prob="0.703" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51121" g_stop="51204" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="774" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E334157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48592" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50910" e_stop="51039"/>
          <exon e_start="51121" e_stop="51204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATC</genome_strand>
        <mrna_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTT-ACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTT-ATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGGCGAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGG-ATGAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706740" ref_strand="+" ref_description="SGN-E706740 [FA30DB11]">
      <seq>gttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttgggggaatgaactatctgtatgtggaaaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48300" stop="51521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48600" g_stop="48870" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="457" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="555" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50910" g_stop="51039" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="685" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51121" g_stop="51221" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="786" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E706740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48600" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50910" e_stop="51039"/>
          <exon e_start="51121" e_stop="51221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTG</genome_strand>
        <mrna_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGGGGAATGAACTATCTGTATGTGGAAAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700051" ref_strand="+" ref_description="SGN-E700051 [FA11DH06]">
      <seq>gctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48309" stop="51601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48609" g_stop="48870" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="350" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="448" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50910" g_stop="51039" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="676" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51121" g_stop="51301" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="856" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E700051" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48609" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50910" e_stop="51039"/>
          <exon e_start="51121" e_stop="51301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</genome_strand>
        <mrna_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205666" ref_strand="+" ref_description="SGN-E205666 [cLEC-21-C21]">
      <seq>tatattatatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgcgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtacatagttctactggcaagagtatggacagcaaagtccgaaccagttccggaacatttcttgcaagagggcgtgatagggtgatcagggatattgagaaaaggattgccgatttcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48323" stop="50087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48623" g_stop="48870" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="336" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="434" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49787" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="521" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E205666" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48623" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTT</genome_strand>
        <mrna_strand>TATATTATATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGCGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTACATAGTTCTACTGGCAAGAGTATGGACAGCAA...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAGGGTGATCAGGGATATTGAGAAAAGGATTGCCGATTTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303931" ref_strand="+" ref_description="SGN-E303931 [cLEX-4-O12]">
      <seq>gattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagaaggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48348" stop="50093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48648" g_stop="48870" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="311" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49793" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="502" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E303931" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48648" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</genome_strand>
        <mrna_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAAGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344189" ref_strand="+" ref_description="SGN-E344189 [cTOF-16-H23]">
      <seq>aatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="48382" stop="51614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48682" g_stop="48870" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49049" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="277" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="473" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49799" i_stop="50936" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50937" g_stop="51039" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="573" r_length="100" r_score="0.835"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51121" g_stop="51308" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="760" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51309" i_stop="51488" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51489" g_stop="51499" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="771" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E344189" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48682" e_stop="48870"/>
          <exon e_start="48962" e_stop="49049"/>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50937" e_stop="51039"/>
          <exon e_start="51121" e_stop="51308"/>
          <exon e_start="51489" e_stop="51499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCT</genome_strand>
        <mrna_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCA-AAT--TCTCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694049" ref_strand="+" ref_description="SGN-E694049 [LH_Ea02O15](-)">
      <seq>accaagagcctacgtttaccataacttcttgtccaaggaagaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttctggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactctctgtatgtggaaaaggtggactctctgtaaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaacaaaaaagatgtgagatgcttcattcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="49175" stop="52611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49476" g_stop="49573" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="129" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49701" g_stop="49798" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50910" g_stop="51039" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="357" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51121" g_stop="51308" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="545" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51309" i_stop="51488" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51489" g_stop="51575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="632" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51576" i_stop="52107" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52108" g_stop="52310" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="837" r_length="205" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="838" polyA_stop="856"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E694049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49476" e_stop="49573"/>
          <exon e_start="49701" e_stop="49798"/>
          <exon e_start="50910" e_stop="51039"/>
          <exon e_start="51121" e_stop="51308"/>
          <exon e_start="51489" e_stop="51575"/>
          <exon e_start="52108" e_stop="52310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCG</genome_strand>
        <mrna_strand>TCCAAGGAAGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCTGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTCTCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAACAAAAAAGATGTGAGATGCTTCATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691828" ref_strand="+" ref_description="SGN-E691828 [LH_Ea07C02]">
      <seq>ccggttaaaggtggactctctgtaaaaccaaagatgggtgacccattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="50915" stop="52590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51209" g_stop="51308" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="51488" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51489" g_stop="51575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51576" i_stop="52107" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52108" g_stop="52291" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="373" r_length="186" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E691828" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51209" e_stop="51308"/>
          <exon e_start="51489" e_stop="51575"/>
          <exon e_start="52108" e_stop="52291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</genome_strand>
        <mrna_strand>CCGGTTAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACCCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306983" ref_strand="+" ref_description="SGN-E306983 [cLEY-11-J23]">
      <seq>acaccttcttctctttgcctactcttatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="59930" stop="61571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60230" g_stop="60551" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="501" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61271" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="529" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E306983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60230" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTG</genome_strand>
        <mrna_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306790" ref_strand="+" ref_description="SGN-E306790 [cLEY-11-K23]">
      <seq>tttgcctactctnatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="59943" stop="61564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60243" g_stop="60551" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="488" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61264" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="509" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E306790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60243" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTA</genome_strand>
        <mrna_strand>TTTGCCTACTCTNATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371658" ref_strand="+" ref_description="SGN-E371658 [TUS-29-G16](-)">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60222" stop="62222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60522" g_stop="60551" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61407" g_stop="61574" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61575" i_stop="61671" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61672" g_stop="61922" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E371658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60522" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61574"/>
          <exon e_start="61672" e_stop="61922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396944" ref_strand="+" ref_description="SGN-E396944 [TUS-44-F9]">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgattctgcttatgacgagttccctaacattttcgatgtggggggggcaaagggtttacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60222" stop="61780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60522" g_stop="60551" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61407" g_stop="61480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="367" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E396944" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60522" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGG</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGATTCTGCTTATGACGAGTTCCCTAACATTTTCGATGTGGGGGGGGCAAAGGGTTTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371659" ref_strand="+" ref_description="SGN-E371659 [TUS-29-G16]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaatttttctgaaaatataatgtaatttaaaagtgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60223" stop="62222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60523" g_stop="60551" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61407" g_stop="61574" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61575" i_stop="61671" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61672" g_stop="61913" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="702" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E371659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60523" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61574"/>
          <exon e_start="61672" e_stop="61913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGA</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTTCTGAAAATATAATGTAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280362" ref_strand="+" ref_description="SGN-E280362 [cLER-1-G18]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60223" stop="62119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60523" g_stop="60551" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61407" g_stop="61574" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61575" i_stop="61671" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61672" g_stop="61819" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="608" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E280362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60523" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61574"/>
          <exon e_start="61672" e_stop="61819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378630" ref_strand="+" ref_description="SGN-E378630 [TUS-44-F9]">
      <seq>cacctttttctttgcactagtgggcatcttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60232" stop="61756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60532" g_stop="60551" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="199" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61407" g_stop="61456" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E378630" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60532" e_stop="60551"/>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</genome_strand>
        <mrna_strand>CACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCATCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396943" ref_strand="+" ref_description="SGN-E396943 [TUS-44-F9](-)">
      <seq>gtgcaattttcacctttttttttgcattagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="60620" stop="62222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60923" g_stop="61101" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61244" g_stop="61327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61407" g_stop="61574" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61575" i_stop="61671" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61672" g_stop="61922" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="723"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E396943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60923" e_stop="61101"/>
          <exon e_start="61244" e_stop="61327"/>
          <exon e_start="61407" e_stop="61574"/>
          <exon e_start="61672" e_stop="61922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730119" ref_strand="+" ref_description="SGN-E730119 [LA23AE05]">
      <seq>ctgccttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaagatcggattccagcacaaaaataagagtgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="63616" stop="65056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63916" g_stop="64756" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E730119" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63916" e_stop="64756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</genome_strand>
        <mrna_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAAGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372195" ref_strand="+" ref_description="SGN-E372195 [TUS-30-P10]">
      <seq>ttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="63621" stop="64869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63921" g_stop="64569" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E372195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63921" e_stop="64569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</genome_strand>
        <mrna_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289322" ref_strand="+" ref_description="SGN-E289322 [cLES-18-B24]">
      <seq>actctccctcacccttcctcaactcttttctccacgcgccgccgctttccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggcttccagattttcattactggctatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="63629" stop="64759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63929" g_stop="64459" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E289322" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63929" e_stop="64459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAA</genome_strand>
        <mrna_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTTCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGCTTCCAGATTTTCATTACTGGCTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731517" ref_strand="+" ref_description="SGN-E731517 [LA27BE07]">
      <seq>gtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="63852" stop="65192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64152" g_stop="64892" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E731517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64152" e_stop="64892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</genome_strand>
        <mrna_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372194" ref_strand="+" ref_description="SGN-E372194 [TUS-30-P10](-)">
      <seq>attcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtatttttcagctgaccaaggcaaagttccggtgcaggatccggttcttcttcttaacggatcgggtaaaggtatcgttaataacatgttcttcgcgaccaatgtggctccctcttatgctccggcagggaaggcactggtttctgtcacgcttgtggggctttatggtgatgtggcagatgaggatttggtggatcgggtcgtgaaggagctatcgggttggtttggggagtcggtagttgggtcatggggttacttgaggatgtacaggatcgggtttgcccaaccgaaccaatgcccacccactaacttgaagaagaacccgaaagtgaaaccgggcttgtacatttgtggagattatgtgactagcgctacttttgatggagctttagtttctgggaaaaaagcagcagaaactttgttacaagataaagctctggttattgtatagcttaattttggtttgagttttttttccacttgtgtaaaagtagaagttttgaatgttgttgatttatttgtatatggaatcataaacgtttcgagatcatttacatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="64416" stop="65748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64716" g_stop="65452" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E372194" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64716" e_stop="65452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</genome_strand>
        <mrna_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354065" ref_strand="+" ref_description="SGN-E354065 [cTOS-16-K24]">
      <seq>agaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70436" stop="68573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70136" g_stop="70100" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69360" g_stop="68868" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="530" r_length="493" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E354065" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70136" e_stop="70100"/>
          <exon e_start="69360" e_stop="68868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</genome_strand>
        <mrna_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695439" ref_strand="+" ref_description="SGN-E695439 [LH_Ea06I13](-)">
      <seq>cagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtttgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattttgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtagtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctttgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccacataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggccctaatttattcttttgttgtgcaatgtaatgtttttgatgttcaaggtaacgtttaacttggaacagagtctttattaactttaaagggaggcaagaagatcaaattttctttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="71172" stop="68573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70872" g_stop="70785" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70336" g_stop="70100" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="325" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69360" g_stop="68870" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="815" r_length="490" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E695439" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70872" e_stop="70785"/>
          <exon e_start="70336" e_stop="70100"/>
          <exon e_start="69360" e_stop="68870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTT</genome_strand>
        <mrna_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTTTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTTTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTAGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTTTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCCCTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAAGGTAACGTTTAACTTGGAACAGA-GTCTTTATTAACTTTAAAGGGAGGCAAGAAGATCAAATTTTCTTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373554" ref_strand="+" ref_description="SGN-E373554 [TUS-31-N24](-)">
      <seq>gccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttcttttttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70583" stop="68573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70283" g_stop="70100" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69360" g_stop="68871" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="674" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E373554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70283" e_stop="70100"/>
          <exon e_start="69360" e_stop="68871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTTTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292300" ref_strand="+" ref_description="SGN-E292300 [cLET-1-I19](-)">
      <seq>gaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgagcagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtatggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70435" stop="68573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70135" g_stop="70100" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69360" g_stop="68871" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="526" r_length="490" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E292300" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70135" e_stop="70100"/>
          <exon e_start="69360" e_stop="68871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGCAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTATGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745208" ref_strand="+" ref_description="SGN-E745208 [GI|47105838]">
      <seq>agggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72032" stop="68573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71732" g_stop="71323" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71152" g_stop="70785" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="778" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70336" g_stop="70100" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="1015" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69360" g_stop="68879" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1497" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1498" polyA_stop="1521"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E745208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1497</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71732" e_stop="71323"/>
          <exon e_start="71152" e_stop="70785"/>
          <exon e_start="70336" e_stop="70100"/>
          <exon e_start="69360" e_stop="68879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</genome_strand>
        <mrna_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231128" ref_strand="+" ref_description="SGN-E231128 [cLED-5-C17]">
      <seq>gatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70517" stop="68619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70217" g_stop="70100" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69360" g_stop="68919" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="560" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E231128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70217" e_stop="70100"/>
          <exon e_start="69360" e_stop="68919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</genome_strand>
        <mrna_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370920" ref_strand="+" ref_description="SGN-E370920 [TUS-27-H17](-)">
      <seq>cacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagcttattaggaaagtaactacattttctatattcattcttcagggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="69948" stop="68676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69648" g_stop="68969" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E370920" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69648" e_stop="68969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATG</genome_strand>
        <mrna_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577872" ref_strand="-" ref_description="SGN-E577872 [LE08AG03]">
      <seq>ttttgtgtgtgtaaaatttaagtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacacatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttgtcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaaacggcaaagaaaagagagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagaaccagctcacttagagggccctctgtatctctgaaagtaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtaactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcagtaatttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="71174" stop="68692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70877" g_stop="70785" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70336" g_stop="70100" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="348" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69360" g_stop="68989" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="719" r_length="371" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E577872" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70877" e_stop="70785"/>
          <exon e_start="70336" e_stop="70100"/>
          <exon e_start="69360" e_stop="68989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTC</genome_strand>
        <mrna_strand>TAAGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTGTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAACGGCAAAGAAAAGAGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAACCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGTAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTA-ACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCAGTAATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370921" ref_strand="+" ref_description="SGN-E370921 [TUS-27-H17]">
      <seq>ttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaggcaaaattatgtgtaccacgagcacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70318" stop="69099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70018" g_stop="69399" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E370921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70018" e_stop="69399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</genome_strand>
        <mrna_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270424" ref_strand="+" ref_description="SGN-E270424 [cLEM-1-M23]">
      <seq>gggttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaagcaaaattatgtgtaccacgagcacacccatttgacgaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="70319" stop="69328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70021" g_stop="69628" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E270424" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70021" e_stop="69628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</genome_strand>
        <mrna_strand>GGGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAAGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691599" ref_strand="+" ref_description="SGN-E691599 [LH_Ea06I13]">
      <seq>ccgtaaaagggagtagtggtggaagtttttagttttggagacctgttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggctaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacgtcgcggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaaacataatgtatggcgtgtaaaggggtttgatacaaatttcgagatctattggcgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72040" stop="70013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71740" g_stop="71323" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71152" g_stop="70785" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="786" r_length="369" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448">
            <donor d_prob="0.936" d_score="0.90"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70336" g_stop="70313" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="810" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E691599" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71740" e_stop="71323"/>
          <exon e_start="71152" e_stop="70785"/>
          <exon e_start="70336" e_stop="70313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAA-GGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTA</genome_strand>
        <mrna_strand>CCGTA-AAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGACCTGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCTAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACGTCGCGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAACATAATGTATGGCGTGTAAAGGGGTTTGATACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730196" ref_strand="+" ref_description="SGN-E730196 [LA23BE02]">
      <seq>aatttcttgaaggcatgttgccggccttcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="71923" stop="70641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71623" g_stop="71323" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71152" g_stop="70941" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="513" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E730196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71623" e_stop="71323"/>
          <exon e_start="71152" e_stop="70941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</genome_strand>
        <mrna_strand>AATTTCTTGAAGGCATGTTGCCGGCCTTCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347470" ref_strand="+" ref_description="SGN-E347470 [cTOF-33-P15]">
      <seq>actgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaagttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcatgccaacaatttgctggaggatcagagccagattgagtcaagttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatagggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaattccatgtctgttgatgtaatacgaaaagcgtttcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72655" stop="70794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72355" g_stop="72119" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71737" g_stop="71323" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="654" r_length="417" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71152" g_stop="71094" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="712" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E347470" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72355" e_stop="72119"/>
          <exon e_start="71737" e_stop="71323"/>
          <exon e_start="71152" e_stop="71094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGAT--GGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</genome_strand>
        <mrna_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAAGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCATGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAAGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATAGGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAAC-AAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373555" ref_strand="+" ref_description="SGN-E373555 [TUS-31-N24]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72744" stop="71070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72444" g_stop="72119" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71737" g_stop="71370" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="694" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E373555" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72444" e_stop="72119"/>
          <exon e_start="71737" e_stop="71370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCC</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292110" ref_strand="+" ref_description="SGN-E292110 [cLET-1-I19]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72744" stop="71187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72444" g_stop="72119" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71737" g_stop="71487" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="577" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E292110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72444" e_stop="72119"/>
          <exon e_start="71737" e_stop="71487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268041" ref_strand="+" ref_description="SGN-E268041 [cLEI-15-J17]">
      <seq>aattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72730" stop="71188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72430" g_stop="72119" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71737" g_stop="71488" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="562" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E268041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72430" e_stop="72119"/>
          <exon e_start="71737" e_stop="71488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</genome_strand>
        <mrna_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290965" ref_strand="+" ref_description="SGN-E290965 [cLET-8-K8]">
      <seq>aagaggaaaaaggaaattaaaaaagctgcctttatttcttcttttatcttcttcgtcatcttcctttccattctaatgtcccacattcacctgaacaacagatatatagagagaaactggaaaacaaccaactgaaaacgaaaccaccataacaggaaaaagacttaatcttttctctgtattacatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgctgaattgtattttcacactgcgtgattcggcaatattatcccatatagggcctaatcacaactaacaaagggagtagtggcggaagtttttagttgtggagagcagtagcatccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="72744" stop="71382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72444" g_stop="72119" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381">
            <donor d_prob="0.598" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71737" g_stop="71682" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="382" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E290965" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72444" e_stop="72119"/>
          <exon e_start="71737" e_stop="71682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTG</genome_strand>
        <mrna_strand>AAGAGGAAAAAGGAAATTAAAAAAGCTGCCTTTATTTCTTCTTTTATCTTCTTCGTCATCTTCCTTTCCATTCTAATGTCCCACATTCACCTGAACAACAGATATATAGAGAGAAACTGGAAAACAACCAACTGAAAACGAAACCACCATAACAGGAAAAAGACTTAATCTTTTCTCTGTATTACATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGCTGAATTGTATTTTCACACTGCGTGATTCGGCAATATTATCCCATATAGGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGCGGAAGTTTTTAGTTGTGGAGAGCAGTAGCATCCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706654" ref_strand="+" ref_description="SGN-E706654 [FA30CC05]">
      <seq>tacccattggaaaatcaagacattgatagtttggagaggcctctgattcatgaaaggagttcaactgtgattgctgacaacaatggatttttacacgatgcctctccaaatgaaattgatttccctggacaagatttgtctgaataccctccagtcagccgaacctcaccagttccaaagccgaagtttgattttgcacagtattatgctttcaatctgacaatatttgccctaaccctgatctattgttcgtttgctcctctggtggttcctgttggtgcagtttactttgggtaccggtatttagttgacaagtacaacttcctgtttgtatacagagtgcgaggtttccctgctggtaatgatgggaggttgatggatactgtattatctatcatgaggttttgtgttgacttgttcctcctttcaatgctacttttcttttctgtacgaggagactcaactaagcttcaagccatattcacacttggattgttagtggtgtataaactcttgccctctgataaggattcttttcagccagcgttattacaaggcatacagactattgataacattgtcgaagggccaactgattatgaggttttctcacaacctacatttgattgggatacgtataattcatgacttgtgaataaaaccaaagatttgtgttgacattttgtatatattcttattttgttacggaagtgttcctgcatctatcagatctctctcctcttttcttggttcatccttttggtggttggaaacagatatttggcttangaccacaagagcacatgttataatgtctaacgggttccactgtagtagcacagtctgtatttctacgatcaggtcttgaccaatctacagagtgaatagatgttgtttgtttaccctcacatctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="81724" stop="83240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82024" g_stop="82940" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="917" r_length="917" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E706654" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82024" e_stop="82940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</genome_strand>
        <mrna_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGATAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTANGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCCTCACATCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341934" ref_strand="+" ref_description="SGN-E341934 [cTOF-9-B2]">
      <seq>ctttacctatcttgcggacctatcctatacaaagctttcagaaagtttccattctcaagtacgagacaagcggcgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgaaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatccaattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacagaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgatattgagaaaatagaccatttcccatcacaacctgttaataccacccatgttccacctgcctttgctgttgtgcctggaaatgataatgcagagaaatcacatgaaaggacgacaactactcgtcaaagttcttttgcatcatctgtttatcaaacatgttatttgaacctcataaactgcttcctagcatctgtgatattgctacttttataattgctaccataagctcattctcacactgaggattcaggttgtttttgatggaccctccaaacaaatcactattttgtgacgtagcataacatttgagaatataggatgttngcatttctgttatactacctncgtttcgttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="88350" stop="91857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88650" g_stop="88695" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88696" i_stop="88778" i_length="83">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88779" g_stop="88852" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88853" i_stop="88943" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88944" g_stop="89043" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="220" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89044" i_stop="89136" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89137" g_stop="89194" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89195" i_stop="90324" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90325" g_stop="90396" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="350" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90397" i_stop="90490" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90491" g_stop="90748" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="608" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90749" i_stop="91446" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91447" g_stop="91557" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E341934" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88650" e_stop="88695"/>
          <exon e_start="88779" e_stop="88852"/>
          <exon e_start="88944" e_stop="89043"/>
          <exon e_start="89137" e_stop="89194"/>
          <exon e_start="90325" e_stop="90396"/>
          <exon e_start="90491" e_stop="90748"/>
          <exon e_start="91447" e_stop="91557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTACCAAAGAATGAAATCAGAATCGATACGACTCTCCACCCGATTTTTTTGTACTTGCAACCCCTTTTTTTTTTCTTTTTTGGTTGTTGTCGTTTTTCATGCTGCCAGCAAGGTTCTTTTTTCACATTTGGTCAATTATTTGGAATATTTTGTGGTTAGGTTGTCTACTTTAAAATAGATTTCGATCTCATGTAATTGTACAAGTAGGGTCTTGAAAAAGTCTAAATGTATCTAATTTCTGTAGGTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACCTCCGTTTCGTTTTAA</genome_strand>
        <mrna_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTTTGATGGACCCTCCAAAC-AAATCACTATTTTGTGACGTAGCATAACATTTGAGAAT-ATAGGATGTTNGCATTTCTGTT-ATACTACCTNCGTTTCGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339273" ref_strand="+" ref_description="SGN-E339273 [cTOF-4-B1]">
      <seq>ctttacctatcttgcggacctatcctatacaaagctttcagaaagtttccattctcaagtacgagacaagcggcgtccacctgatccgaggatcccctttgaatattgttatgatatgagtcctgatgaaaatactagcttgattcctagtttaagcctaactatgagtgggggaggccaacttgctgtcaatgatccaattattgtcatatccacacagaatcaactaatgtattgcctggccattgtgaagagtgatgctctaaatataattggacagaacttcatgactggataccgctttgtgtttgatcgagaaaaaatcatcctcggttggaagaaatttgattgttatgatattgagaaaatagaccatttcccatcacaacctgttaataccacccatgttccacctgcctttgctgttgtgcctggaaatgataatgcagagaaatcacatgaaaggacgacaactactcgtcaaagttcttttgcatcatctgtttatcaaacatgttatttgaacctcataaactgcttcctagcatctgtgatattgctacttttataattgctaccataagctcattctcacactgaggattcaggttgtttttgatggaccctncannacaaatcactattttgtgacgtagcataacatttgagaatataggatgttgcattttctgttaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="88350" stop="91840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88650" g_stop="88695" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88696" i_stop="88778" i_length="83">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88779" g_stop="88852" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88853" i_stop="88943" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88944" g_stop="89043" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="220" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89044" i_stop="89136" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89137" g_stop="89194" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89195" i_stop="90324" i_length="1130">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90325" g_stop="90396" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="350" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90397" i_stop="90490" i_length="94">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90491" g_stop="90748" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="608" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90749" i_stop="91446" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91447" g_stop="91540" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="701" r_length="93" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E339273" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88650" e_stop="88695"/>
          <exon e_start="88779" e_stop="88852"/>
          <exon e_start="88944" e_stop="89043"/>
          <exon e_start="89137" e_stop="89194"/>
          <exon e_start="90325" e_stop="90396"/>
          <exon e_start="90491" e_stop="90748"/>
          <exon e_start="91447" e_stop="91540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGTGTATGAATCCTTTTCAAATGGTGTACTTATTTGTATACATTGTTAGATCATGTTTAAGATTCAAATGTTTTCTTCCCAAATAGTTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAGGTAATATCTGCTAATACACAACCACACATATTATTTATTTATTTATTTACTTATTTTTCCCTTTTATCATTTTATGATTCATATCGGACAGTCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAGGTACAATCGTTCAACTATCTTGCACAATATTTTCTTCTTAATTTCAGTTTATCGCCTTTCCTGTATATGTACTAAATACTGTTTCCTATGCAGAATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGACGTAAGGCTTTCTAAGTGCAACAGTGTTTTTGTATTTTCTATTTTTCATTGAATTGAACTGAATTTTCAAGCACATGGTAAGGAAGTTTGTTTCTACTGCAACATGAAACAAACAGAGAAGTGCATTATAAACACTGAGGGAACAACATACTTGCATGGAAAAGTTGCACCTTTTGCATTAAAGAATTAGTTTTAGTGGTTTCATAAAATGACTTGAAGGAATTTGACTTGGGCAATTTTGCCAAAATATTGGAGATCGTGATTGAGGACATGGCTTACAATCATCGTCTTTGATCATACCATTAGGCATTTGATTAAAGCTAAGACCTTAGTTCTAATTTAACTCCAAAAGTTAGCAGGAGGTGAGGATTGCCAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACAAGACCATATAAGGAGACAACATATACTCTCAACAAATTTGGGAATCTCACATACACACTCTACTTCCACCCTCCCAGTCAAGTACTGAACGTTGGAGCGTGAACAATATACATAGTGGCGTAATATTGGACAAACCAAAAATATAGATTGACCTGGCTTTGTACCATGTTAAAAATGGTCATTAGGTTCAAGTGAACTTGAAAAGATAACTTGTGAGGTTAGGAATGCTTAAGACCCCATATAAGGAGACAGGAACCATATCCGCAACCAATGGGACACTAATATTATAATTTGTTATATAGTTCATTCAGCAATTTTGGTAGCTTTTGTTCAACTGGAAGGAGTTTCCATGATTTGATTTTTCAGGACACTTCACTTCAGAAAGATAACCAGCAAAATATAGTTTTATTAGAGACAACAACAATTTTGGCTTTAATTACCTTAAAATAAGTGGTTTTCCCTTTATGTTAGTCAAAATAGAATAGAATGATCACCTTTTCGTAGCATAAGCAGTCCCACACCTTGTATAATTGATGCTTCAGGTTCCTGGCAATGTAATAAACTCTCTAGCTATGAAACTGCCAGAGCTAATCTCAGCTCTCTAAAAGTTTTGGTTGTATATCACCTTACTTTTAGCTGGCAGCTAAAAAATTGTACTAGTCATTTCCAAATTGTGATATCTGACTGTTGTTGCTCTTACTGATCTTTTTCCAGAGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATTGTGAGTATTGTTTTTGGTGTTCTTTCTTCCAATAACTTAGATATTACAAGAAGATTATTCTTTTCATACTTTTGGTCTTGTGGCCTTCATGCAGGTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAGGTATGCTTCTTAGGACTTTTTAACACATATATAGTGCAGATAATCATACTTGCAGAGCTCCAATATGGACAGAAATTTTTGGTTTGCCTGCTCATATCTGATTTTGAGGCTAACCATATAATGTATAGAAATGTTAATACATTACACTATGATAGTTTATGTACCTTATGATTGCAATAGAACAGTGAGATTGTACAGTGCCACCTCGTTCCACAGCCACAGCTAAAACATATCTACTACCTTAGGCTTGAATCAATAACTGCATTTACGTCTCTACTAACTTCAAATCTCGAATCAACCTTAGCTTTGGCGATGATTAACATTATGGACTCTCTTTTATTTTATTTTTATATATAATATAGTAGTGGATTTTTGGAAGTGTGATGAATTTGGGGGAAGTGATAAATAAAGTAGGCAAAGATTGCGTTTTAAAATTAAGAAAGGAAAAAAAAAGGTACCAAAGAATGAAATCAGAATCGATACGACTCTCCACCCGATTTTTTTGTACTTGCAACCCCTTTTTTTTTTCTTTTTTGGTTGTTGTCGTTTTTCATGCTGCCAGCAAGGTTCTTTTTTCACATTTGGTCAATTATTTGGAATATTTTGTGGTTAGGTTGTCTACTTTAAAATAGATTTCGATCTCATGTAATTGTACAAGTAGGGTCTTGAAAAAGTCTAAATGTATCTAATTTCTGTAGGTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTA</genome_strand>
        <mrna_strand>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT...................................................................................TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG...........................................................................................TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG.............................................................................................AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT..............................................................................................GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTTTGATGGACCCTNCANNACAAATCACTATTTTGTGACGTAGCATAACATTTGAGAAT-ATAGGATGTTGCATTTTCTGTTAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338559" ref_strand="+" ref_description="SGN-E338559 [cTOE-15-K15]">
      <seq>acacttccaaaaatccactactatattatatataaaaataaaataaaagagagtccataatgttaatcatcgccaaagctaaggttgattcgagatttgaagttagtagagacgtaaatgcagttattgattcaagcctaaggtagtagatatgttttagctgtggctgtggaacgaggtggcactgtacaatctcactgttctattgcaatcataaggcacaacagcaaaggcaggtggaacatgggtggtattaacaggttgtgatgggaaatggtctattttctcaatatcataacctgcatgaaggccacaagaccaaaagtatgaaaagaataatcttcttgtaatatctaagttattggaagaaagaacaccaaaaacaatactcacaatcaaatttcttccaaccgaggatgattttttctcgatcaaacacaaagcggtatccagtcatgaagttctctggaaaaagatcagtaagagcaacaacagtcagatatcacaatttggaaatgactagtacaattttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="91430" stop="89954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91130" g_stop="90913" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90912" i_stop="90572" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90571" g_stop="90254" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="536" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E338559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91130" e_stop="90913"/>
          <exon e_start="90571" e_stop="90254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAGGTACATAAACTATCATAGTGTAATGTATTAACATTTCTATACATTATATGGTTAGCCTCAAAATCAGATATGAGCAGGCAAACCAAAAATTTCTGTCCATATTGGAGCTCTGCAAGTATGATTATCTGCACTATATATGTGTTAAAAAGTCCTAAGAAGCATACCTGAATCCTCAGTGTGAGAATGAGCTTATGGTAGCAATTATAAAAGTAGCAATATCACAGATGCTAGGAAGCAGTTTATGAGGTTCAAATAACATGTTTGATAAACAGATGATGCAAAAGAACTTTGACGAGTAGTTGTCGTCCTTTCATGTGATTTCTCTGCATTATCATTTCCAGGCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</genome_strand>
        <mrna_strand>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG.....................................................................................................................................................................................................................................................................................................................................................GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310536" ref_strand="+" ref_description="SGN-E310536 [cLEZ-19-A2]">
      <seq>tttttttttcctttctcaaaatccccttttatctcctcaccttttctctttctttctccctgtatatctatatatcaacatacaaagaatcagtcttttttgtttttccttatacaaacatgcctaattctggtaaaattcgtaattttttccttgccccaattattttcttggcgattcttggataccagttgaagacaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgataagggccgacgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="94634" stop="96306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94934" g_stop="95366" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95916" g_stop="96006" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="524" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E310536" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94934" e_stop="95366"/>
          <exon e_start="95916" e_stop="96006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGT</genome_strand>
        <mrna_strand>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGATAAGGGCCGACGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327993" ref_strand="+" ref_description="SGN-E327993 [cTOC-22-A13]">
      <seq>tttttcctttctcaaatccccttttatctcctcaccttttctctttctttctccctgtatatctatatatcaacatacaaagaatcagtcttttttgtttttccttatacaaacatgcctaattctggtaaaattcgtaattttttccttgccccaattattttcttggcgattcttggataccagttgaagacaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgtcgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgnnctatggagtgcatatctctccaataacacctcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="94638" stop="97116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94938" g_stop="95366" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95916" g_stop="96051" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="564" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96663" g_stop="96816" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="718" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E327993" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94938" e_stop="95366"/>
          <exon e_start="95916" e_stop="96051"/>
          <exon e_start="96663" e_stop="96816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCT-TATGGAGTTGCATATCTCTCCAATAACACCTCATCAT</genome_strand>
        <mrna_strand>TTTTTCCTTTCTC-AAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGNNCTATGGAG-TGCATATCTCTCCAATAACACCTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212207" ref_strand="+" ref_description="SGN-E212207 [cLEC-75-K13]">
      <seq>acattcgggtttgatatccatcaccggtattcggatccggtaaagggtattttggaccttcatgggttgcctgagaaggggactgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgtcgccttgctgatacaactaatcccacagtgccccttgctttttctggaggaaatgaaactttgcggctcagttctttgggattcttgcattatgcaaatgtcactgtgggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgnaaatatatctgtccccagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="94849" stop="97578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95149" g_stop="95366" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95916" g_stop="96051" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="354" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96663" g_stop="96898" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="590" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97130" g_stop="97278" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="739" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E212207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95149" e_stop="95366"/>
          <exon e_start="95916" e_stop="96051"/>
          <exon e_start="96663" e_stop="96898"/>
          <exon e_start="97130" e_stop="97278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATG</genome_strand>
        <mrna_strand>ACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGNAAATATATCTGTCCCCAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395370" ref_strand="+" ref_description="SGN-E395370 [TUS-16-J3]">
      <seq>attgcagcaactgtgtgcgtgcccttcagacacgcagtggaggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaggcaaaacagccacgtattcaacctgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="95708" stop="98008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96008" g_stop="96051" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96898" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="280" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97130" g_stop="97354" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="505" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97449" g_stop="97584" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="641" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97667" g_stop="97708" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="683" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E395370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96008" e_stop="96051"/>
          <exon e_start="96663" e_stop="96898"/>
          <exon e_start="97130" e_stop="97354"/>
          <exon e_start="97449" e_stop="97584"/>
          <exon e_start="97667" e_stop="97708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGC</genome_strand>
        <mrna_strand>ATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAGGCAAAACAGCCACGTATTCAACCTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206409" ref_strand="+" ref_description="SGN-E206409 [cLEC-23-A1]">
      <seq>ttgcagcaactgtgtgcgtgcccttcagacacgcagtgggggacgaataaatcttaatatctacagccctaatacgtcttcaacgagtgagattgttccgtgcaatggcactttgtgtggacaaaatagacgatgcttagcttcgcagaatgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaagctccaattgctctgggttgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggacttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="95709" stop="97654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96009" g_stop="96051" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96898" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="279" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97130" g_stop="97354" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="504" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97449" g_stop="97455" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="511" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E206409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96009" e_stop="96051"/>
          <exon e_start="96663" e_stop="96898"/>
          <exon e_start="97130" e_stop="97354"/>
          <exon e_start="97449" e_stop="97455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACT</genome_strand>
        <mrna_strand>TTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728190" ref_strand="+" ref_description="SGN-E728190 [LA17AA05]">
      <seq>gacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctcatcgttccccatctgattccatcatctagacctgcagggaaccatgcaccacatttgaatttccttctatacnaacttatgatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="96970" stop="99022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97270" g_stop="97354" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97449" g_stop="97584" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="295" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="395" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="456" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="528" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98501" g_stop="98722" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="751" r_length="223" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E728190" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97270" e_stop="97354"/>
          <exon e_start="97449" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCC-CATCTG-TTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAA-TTCCTTCTATTACCAACTTATGATGGCTA</genome_strand>
        <mrna_strand>GACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCT-CATCGTTCCCCATCTGATTCCATCATCTAGACCTGCAGGGAACCATGCACCACATTTGAATTTCCTTCTA-TACNAACTTATGATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392804" ref_strand="+" ref_description="SGN-E392804 [TUS-36-P22]">
      <seq>ctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97168" stop="99046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97468" g_stop="97584" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="291" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98746" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="670" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E392804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97468" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATT</genome_strand>
        <mrna_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396146" ref_strand="+" ref_description="SGN-E396146 [TUS-41-C23]">
      <seq>ctgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97168" stop="99040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97468" g_stop="97584" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="291" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98740" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="664" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E396146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97468" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACT</genome_strand>
        <mrna_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395810" ref_strand="+" ref_description="SGN-E395810 [TUS-18-O21]">
      <seq>ctgacacttttaacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctgggacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97178" stop="98187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97468" g_stop="97584" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97887" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="259" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E395810" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97468" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATC</genome_strand>
        <mrna_strand>CTGACACTTTTAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGGACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233342" ref_strand="+" ref_description="SGN-E233342 [cLED-9-K23]">
      <seq>tgacaggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97169" stop="98837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97469" g_stop="97584" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="190" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="290" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="351" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98537" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="460" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E233342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97469" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</genome_strand>
        <mrna_strand>TGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239782" ref_strand="+" ref_description="SGN-E239782 [cLED-29-K5]">
      <seq>aggaataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97173" stop="98837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97473" g_stop="97584" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="186" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="286" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="347" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98537" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="456" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E239782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97473" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</genome_strand>
        <mrna_strand>AGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243717" ref_strand="+" ref_description="SGN-E243717 [cLED-35-A4]">
      <seq>aataacagtaggaagcaagatcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97176" stop="98871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97476" g_stop="97584" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="283" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="344" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="416" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98571" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="487" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E243717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97476" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCG</genome_strand>
        <mrna_strand>AATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309613" ref_strand="+" ref_description="SGN-E309613 [cLEY-26-D11]">
      <seq>tcactgatcttgatttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97196" stop="99062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97496" g_stop="97584" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="163" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="324" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="396" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98762" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="658" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E309613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97496" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTC</genome_strand>
        <mrna_strand>TCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374861" ref_strand="-" ref_description="SGN-E374861 [TUS-15-G23]">
      <seq>tcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97237" stop="99120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97537" g_stop="97584" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="122" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="222" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="355" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98820" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="675" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E374861" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97537" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</genome_strand>
        <mrna_strand>TCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204167" ref_strand="-" ref_description="SGN-E204167 [cLEC-13-M3]">
      <seq>aaacttcgattctgaagcaaaacagccacgtattcaacctgatggcacaattcgttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97365" stop="99120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97581" g_stop="97584" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="78" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="239" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="311" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98501" g_stop="98820" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="631" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E204167" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204167" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97581" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</genome_strand>
        <mrna_strand>AAAC..................................................................................TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCGTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390365" ref_strand="+" ref_description="SGN-E390365 [TUS-41-C23](-)">
      <seq>ttgaagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97375" stop="99245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97674" g_stop="97740" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="167" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="228" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="300" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98501" g_stop="98948" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="748" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E390365" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97674" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>TTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395475" ref_strand="+" ref_description="SGN-E395475 [TUS-16-J3](-)">
      <seq>aagcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttatttctgtcctttttccgttcaagattcaatataatacaattcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97377" stop="99245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97677" g_stop="97740" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="164" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="225" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98501" g_stop="98948" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="745" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E395475" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97677" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>AAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTATTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACAATTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396304" ref_strand="+" ref_description="SGN-E396304 [TUS-44-C23](-)">
      <seq>agcaaaacagccacgtattcaacctgatggcacaattccttttgagtactgctatgggataagtgcaaatcaaactacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttatcttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatagtgatacatttctttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97378" stop="99245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97678" g_stop="97740" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="163" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="224" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="296" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98501" g_stop="98948" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="745" r_length="449" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E396304" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97678" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATA-TAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>AGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATAGTGATACATTTCTTTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392896" ref_strand="+" ref_description="SGN-E392896 [TUS-36-P22](-)">
      <seq>ccttttgagtattgctatgggataagtgcaaatcaaaatacatttgaagttccagacgtaaatttgacaatgaaaggtggcaaccaattttattttttcgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttctttctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97518" stop="99245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97715" g_stop="97740" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.640" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="126" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="187" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="259" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98501" g_stop="98948" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="707" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E392896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97715" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>CCTTTTGAGTATTGCTATGGGATAAG...............................................................................TGCAAATCAAAATACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATTTTTTCGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397878" ref_strand="-" ref_description="SGN-E397878 [TUS-35-L14]">
      <seq>caatgaaaaggtggcaaccaattttatcttttcgatccgataataatgatctcactcccggacggttcaggcgcatactgtttagcccccctgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcacgtaatatttgatcgggagaagatggttttgggttggaaagcctctgattgttatgattctggagaatcaaacgatagatcaacaactctgcccgtgaacaagcgcaattctaccgaagcgccttcgcctgccagtgtggtgcccgaggccaccaagggaaatgcaagtgcaaatgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="97561" stop="99121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97861" g_stop="97919" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="121" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="0.90"/>
            <acceptor a_prob="0.544" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="193" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98501" g_stop="98821" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="514" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E397878" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97861" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATG-AAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAG</genome_strand>
        <mrna_strand>CAATGAAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGATCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCCCCCCTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391595" ref_strand="+" ref_description="SGN-E391595 [TUS-16-C8](-)">
      <seq>aaaaaaaaaccaacaagggaaatgcaagaagcaaatgaacccgttacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattaccaacttatgatggctatattttcctttttcaactattatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaagggaagtgtcccacagcatttttgatattgcagtttatacctgatatatgtattgtaaatataactctgatttaggtctgtcctttttccgttcaagattcaatataatacatttcgttcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="98320" stop="99245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98591" g_stop="98949" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E391595" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98591" e_stop="98949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGAGGCCACCAAGGGAAATGCAAG-TGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTT</genome_strand>
        <mrna_strand>AAAAAAAAACCAACAAGGGAAATGCAAGAAGCAAATGAACCCGTTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAAGGGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTAGGTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395809" ref_strand="+" ref_description="SGN-E395809 [TUS-18-O21](-)">
      <seq>ttatttgattattatttcttcttgaggcttttatttgtcctctgtataatattgagttctgttacagcatagaagagaagtgtcccacagcttttttgatattgcagtttatacctgatatatgtattgtaaatataactctgataaaaggctctcctttttccgttcaagattcaatataatacaaaagggtcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="98442" stop="99227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98742" g_stop="98948" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E395809" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98742" e_stop="98948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCT</genome_strand>
        <mrna_strand>TTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAAGAGAAGTGTCCCACAGCTTTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATAAAAGGCTCTCCTTTTTCCGTTCAAGATTCAATATAATACAAAAGGGTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377781" ref_strand="+" ref_description="SGN-E377781 [TUS-21-L1](-)">
      <seq>ttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattagacagacgaggttcctgaaaatggatcatggttcagtatgggtgaatagtggccttagtgaatctcaatacgtagcaactttaattgtttttactttattttttactgtatggcctatatttatggttgcatcattgttttgctgtcttaacttgcagagatgtacgttgtaccatgttcaatttttttttttttacagtagtcgactgtaaacttaatgtaattcctctatactcgtcttgagattcacaatacagcgacttctgttctgattattgagctgaagtttgttggaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100021" stop="98879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99721" g_stop="99178" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E377781" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99721" e_stop="99178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</genome_strand>
        <mrna_strand>TTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTG-TTGGAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238142" ref_strand="+" ref_description="SGN-E238142 [cLED-22-J10]">
      <seq>aactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100435" stop="99186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100135" g_stop="100025" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99890" g_stop="99486" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="516" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E238142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100135" e_stop="100025"/>
          <exon e_start="99890" e_stop="99486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGA</genome_strand>
        <mrna_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354750" ref_strand="+" ref_description="SGN-E354750 [cTOS-19-A21]">
      <seq>tccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagnaggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgannagcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100725" stop="99249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100425" g_stop="100025" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99890" g_stop="99549" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="743" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E354750" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100425" e_stop="100025"/>
          <exon e_start="99890" e_stop="99549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGT</genome_strand>
        <mrna_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGNAGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGANNAGCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243445" ref_strand="+" ref_description="SGN-E243445 [cLED-34-I14]">
      <seq>aactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100435" stop="99333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100135" g_stop="100025" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99890" g_stop="99633" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="369" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E243445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100135" e_stop="100025"/>
          <exon e_start="99890" e_stop="99633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAAT</genome_strand>
        <mrna_strand>AACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353782" ref_strand="+" ref_description="SGN-E353782 [cTOS-10-A13]">
      <seq>tccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100725" stop="99374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100425" g_stop="100025" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99890" g_stop="99674" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="618" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E353782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100425" e_stop="100025"/>
          <exon e_start="99890" e_stop="99674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCT</genome_strand>
        <mrna_strand>TCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237865" ref_strand="+" ref_description="SGN-E237865 [cLED-18-D22]">
      <seq>tggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100825" stop="99566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100525" g_stop="100025" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99890" g_stop="99866" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="526" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E237865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100525" e_stop="100025"/>
          <exon e_start="99890" e_stop="99866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTG</genome_strand>
        <mrna_strand>TGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377782" ref_strand="+" ref_description="SGN-E377782 [TUS-21-L1]">
      <seq>tggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100984" stop="99748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100684" g_stop="100048" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E377782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100684" e_stop="100048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGAC</genome_strand>
        <mrna_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260935" ref_strand="+" ref_description="SGN-E260935 [cLEG-55-J21]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaatcacacctctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="101567" stop="99755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101267" g_stop="101154" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100728" g_stop="100055" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="787" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E260935" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101267" e_stop="101154"/>
          <exon e_start="100728" e_stop="100055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGC</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTT-AATCACACCTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235263" ref_strand="+" ref_description="SGN-E235263 [cLED-11-C15]">
      <seq>tggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaagagaccctaacttgaaaggttacaacatgaaacctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="100984" stop="99861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100684" g_stop="100161" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E235263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100684" e_stop="100161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAA</genome_strand>
        <mrna_strand>TGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAAGAGACCCTAACTTGAAAGGTTACAACATGAAACCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262043" ref_strand="+" ref_description="SGN-E262043 [cLEG-58-H16]">
      <seq>aggtctagattttcacactcgagctttgcagcatatcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcatatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacataagataaatctgcctaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaagacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagatggataaacagtcggaaactgtgtgggaagcttatctcagagagaacagggagaaaaagaagtccaggataggtaacgccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgctaaaggggataaggattcccaacgtaagagcaccatgaaagggaagcagagccttgaagcatctgaagaagctgaagccagtacagcagagcttgagctattacttgcagatgacaaaggaggagaccctatcttgaagggttacgacatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="101565" stop="99867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101265" g_stop="101154" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100728" g_stop="100167" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="674" r_length="562" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E262043" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101265" e_stop="101154"/>
          <exon e_start="100728" e_stop="100167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAAC</genome_strand>
        <mrna_strand>AGGTCTAGATTTTCACACTCGAGCTTTGCAGCATATCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACATAAGATAAATCTGCCTAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAAGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGATGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAGAGAACAGGGAGAAAAAGAAGTCCAGGATAGGTAACGCCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCTAAAGGGGATAAGGATTCCCAACGTAAGAGCACCATGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCCAGTACAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTATCTTGAAGGGTTACGACATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257621" ref_strand="+" ref_description="SGN-E257621 [cLEG-45-F24]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaagaccttgaagagacggttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaagtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcgaacgtatcctagaaaagaatgataaacaggcggaaactgtgtgggaagcttatctcagaaagaaaagggagagaaagaagtccaggaaaggtaacaccaaggattcatcataagatgagagcagcgatagtgatcgagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaacatgggataaggattccctacgtaagagcaccaggaaagggaagcagagccttgcagcatctgcagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="101567" stop="99904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101267" g_stop="101154" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100728" g_stop="100204" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="639" r_length="525" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E257621" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101267" e_stop="101154"/>
          <exon e_start="100728" e_stop="100204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAA</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAAGACCTTGAAGAGACGGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAAGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCGAACGTATCCTAGAAAAGAATGATAAACAGGCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAGAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCATAAGATGAGAGCAGCGATAGTGATCGAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAACATGGGATAAGGATTCCCTACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGCAGCATCTGCAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257455" ref_strand="+" ref_description="SGN-E257455 [cLEG-45-F23]">
      <seq>gaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaatgataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgaaagcagcgatagtgatcaagaacctatagatgaacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="101567" stop="100049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101267" g_stop="101154" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100728" g_stop="100349" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="494" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E257455" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101267" e_stop="101154"/>
          <exon e_start="100728" e_stop="100349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGA</genome_strand>
        <mrna_strand>GAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAATGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAAAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345019" ref_strand="+" ref_description="SGN-E345019 [cTOF-22-N1]">
      <seq>gttttagggttttagagagaagaagaacgtattcatggagtcaaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaaaaagatgatgatgagatggacaatgagaaattacgcgcctatgagatgagtcggctcaggtattattatgctgtggtggaatgcgattcaagtgctacagctgattatctttacaaaacttgtgatgggggttgagtttgagagaacatcaaacaaattagatttgaggtttattccagattccatggaattcaagcatcaaccacgtgacattgcaacagaggcccctgcagattatgaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="104180" stop="100889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103880" g_stop="103435" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103434" i_stop="101852" i_length="1583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101851" g_stop="101785" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101784" i_stop="101564" i_length="221">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101563" g_stop="101401" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="677" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101400" i_stop="101283" i_length="118">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101282" g_stop="101189" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="771" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E345019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103880" e_stop="103435"/>
          <exon e_start="101851" e_stop="101785"/>
          <exon e_start="101563" e_stop="101401"/>
          <exon e_start="101282" e_stop="101189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAGGTATACAATGAAAAAGACAGCATTTTTGTTGGGTATGATGTTTGAATTTATGGCTTTTAATTATTTTGCAATTTTTTTTGTTTTGGTCTGAATCAGAAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAAAGGTTAGTTTTTTTTTTCTTTTCCAATATGGATTAATTGAATGATCCCTAGAAAGGTGTCAAATTTTGGAAATTTTGTCCTTCGATATGGTAAAATTATAATTGTTTTACATTAACTGTACTATAATTTATAATTGCTTAAACCAACTCTATCAAGATGAATTTGGCCCTGCAGGCGGTTGAATTGGTTGGAATGAGAATATTCAGTTCAGTTTGACCGTTACTGGCCTTGTCTAAATGTTTCATATAACTTTGGAATAACAGTTTGAGCATTTCTGGACACTGGATTAAATTGTTAAGAGATTGTGCCGAGCATTCAATTTTGAAAATAGAAATAGTTGTGGAAAGGTGCTACCTATAAAAAAAAGTTATGCACTGGTGTATTGTGGTGAAGTATTCCTTAGCTTTGAAGTTGAGTTGCAGGCAAAAATAATAGAAATGGTAGTCAGTGTATACGGGAGGCTATCTATGGGTTCATGCATTTGTCTATAATATATGATAGTGTTGGGCGTTGTCTATCATTCATCATACCCTACCGTGGTCATAATGTGGATTGCACCTCGATTCAAACTTATAAGGGGTCACTTGGTTTGTAATATAGATTTCTTAACTACTGAAGTGATCTATAGAATGTTGCTGGTAGATACCTCTGCATAGCTAATATTGTTTAGTTTTCGCTTTTCAGTGTTAAGCTCTGCACTCCTTTAAAGCAAAATTTATGTGAAATGTATATATTGTTTACGCTGCATAATGTGAAATAATGAAATATTTAGTAGTAATGCATGAATCAGAACAGAAGACAAATAAATCCCTTGGAGTATGGAATCCCTGTATAATTTATATTTCACTGCACCTTACATTATTCTTTACTTTATAACAAACCTGACACTGTTATTAAAACCCTTTATTATATTCCATAAATAGCCATTAACCAAACTATGCCTTGATGTATTTAACTTCTATAGAACGATTAAATTCTTTTCTCAGCAAGCTGTTATGCTATGTAGGCAGTTGACTTGTATATGCTATTGAGCTCCTTTCTCCCAAGAGGGGGTCAAATAACATCTGTTGCTGTCTATCCATCTGACTTTGGTCTCAAGCGTATGGAAGAGGAGGCTGTCCATGGTCCAGTTGGCCTATTTGACGAGGAAAAGGCAAAAGATGAAGACAGTGATGATGATGAAGAAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAGGTGATGATTTGGTTCTGTGTTTTTTCTGGGTAATGTATCTTTAAGTGATTCTTGCATTTTTTGCCGACTAAAAATGATAACTTGTTGATAAACCTTTATGAAATTTATTTGGTTCCTCTTCTTTTTTTACCCTTATGCTACTCCATTCTGTGTTTATTAATTCCCCGTCCTTCATTATGTATAGGTCTCTTTTCAAAGATACTTTCTTATGTACTTCGCAGGTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGAT-GGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAGGTAATTTGTGGCTACGATTTCTCATCATAGGAGCCTTTAGTTTTAACGGTTATTATTGGCTGAAAACATAAAATCTAATTGTATTTGTGTTCGATTGTTATATTCTTCTGGTACTTAGGCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCA</genome_strand>
        <mrna_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG.............................................................................................................................................................................................................................GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG......................................................................................................................GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272596" ref_strand="+" ref_description="SGN-E272596 [cLEM-21-F23]">
      <seq>aaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaagaagaagaagagaccaagagtgacagtgggacgagtgaggaagaaattgaagaccataaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="104138" stop="103062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103838" g_stop="103362" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E272596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103838" e_stop="103362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAA</genome_strand>
        <mrna_strand>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338227" ref_strand="+" ref_description="SGN-E338227 [cTOE-13-C19]">
      <seq>gttccattattgagcacatttatttttttctccatctactattctcaaagcaatgcacttagttccaattactatgcaaaaacatgccctcaagctgaagacatagtaatgaaggttgttaaggaggaagcacagaaagacagaacagtgcccgctacacttctaaggatgcatttccatgattgtttcctacggggttgtgatgcttctattttgttgagctccaaggggaaaaacaccgcggaaaaggacgcgcctcctaatggttctttgcacggattctatgttattgatggtgcaaagagagcagttgaagctatatgtcctggcgtagtgtcttgtgctgatattttagcgtttgctgcaagagatgcagttgtgttatcaggcggaccttactggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="108166" stop="109420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108466" g_stop="108660" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108661" i_stop="108734" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108735" g_stop="108923" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="384" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108924" i_stop="109046" i_length="123">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109047" g_stop="109120" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="458" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E338227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108466" e_stop="108660"/>
          <exon e_start="108735" e_stop="108923"/>
          <exon e_start="109047" e_stop="109120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGGGTAAATAAGCATCTTCGCTAAGCATATTAGTTATTTTTACTGTACTTACTTCCTCTGTTCTACCTTGCTTGAAGGGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTAGTAAGTACATATCCCCTGCAAAAGTTATATACTGAACATCTCTCTCGTGTTTGGATGATGTGGATTTGCATAGAGTGTAATAAATACTATATTGTATAAGCTTATTACTAGTTGTTTTTTCAGTCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</genome_strand>
        <mrna_strand>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG..........................................................................GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA...........................................................................................................................TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349472" ref_strand="+" ref_description="SGN-E349472 [cTOS-1-A21]">
      <seq>tggaaggtgcctaaaggaagaaaagacggacgaatatcaagagctagtgaaacaacactgcttccaaagcctacattcaacatttctcaactccaacaaagcttccatcaaagaggtctctcactagacgacttggtggctctcttaggtgcgcacactctaggatttacccattgctcatcatttatgaaccgtatatacaacttcaacgccacacatgacatcgatcctacactacgtccatcgtttgcagcaagcttgaagggcatatgtccactcaaaaacagggcaaaaaacgcaggaataagcaatgatccttcaccaacaacatttgataatactcattacaggctaattctacaaaagaaaagtttgttattttcggatcattcattgctcactataccaaaaacgaagagcttagtttataagtttgctacctcaaaagcagcttttcataaggcattttctaattctatgattaagatgagtagccttacaggaggtcaagaagttagaaaaaattgcagggttgtaaactaattaattattattaattctaatttgatatttttatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="108762" stop="110322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109062" g_stop="109209" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109210" i_stop="109292" i_length="83">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109293" g_stop="109733" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="589" r_length="441" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E349472" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109062" e_stop="109209"/>
          <exon e_start="109293" e_stop="109733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAGGTCAGCACCAAACTTGATTTCTTAAAAATGGTCACTCAACTTACATCTGATACGACGATACATTTCTTCTCTCTGGCTTGCAGGTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAATTTAAATT</genome_strand>
        <mrna_strand>TGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG...................................................................................GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269294" ref_strand="+" ref_description="SGN-E269294 [cLEM-18-B23]">
      <seq>atagactaattttaagaaaatcctaaaatggcaccaatttgtaaccttttgttatctagaatttagttttaaaactatttttccaagaaattttgtgattaggcccgactcgaaatcgtgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111108" stop="112949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111408" g_stop="111783" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112649" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="479" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E269294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111408" e_stop="111783"/>
          <exon e_start="112547" e_stop="112649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTC</genome_strand>
        <mrna_strand>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700390" ref_strand="+" ref_description="SGN-E700390 [FA12DH10]">
      <seq>attttaagaaaatcctaaaatggcaccaatttgtaaccttttgttatctagaatttagttttaaaactatttttccaagaaattttgtgattaggcccgactcgaaatcgtgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaaagcagtggtgctcggttttaggatcagggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111116" stop="115002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111416" g_stop="111783" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="487" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="545" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="623" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114702" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="870" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E700390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111416" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATT</genome_strand>
        <mrna_strand>ATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAG-CAGTGGTGCTCGGTTTTAGGATCAGGGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343537" ref_strand="+" ref_description="SGN-E343537 [cTOF-19-O16]">
      <seq>tgatatatagtccttatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatgggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111226" stop="114965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111526" g_stop="111783" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="377" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="435" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="513" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114665" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="725" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E343537" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111526" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATAT-GGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGA</genome_strand>
        <mrna_strand>TGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373170" ref_strand="+" ref_description="SGN-E373170 [TUS-32-I3]">
      <seq>tatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111240" stop="114928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111540" g_stop="111783" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="363" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="421" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="499" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114628" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="673" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E373170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111540" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTG</genome_strand>
        <mrna_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292777" ref_strand="+" ref_description="SGN-E292777 [cLET-11-N14]">
      <seq>tatcatcctgcatattctggaagccacactcataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111240" stop="114313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111540" g_stop="111783" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="363" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="421" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114013" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E292777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111540" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTT</genome_strand>
        <mrna_strand>TATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342414" ref_strand="+" ref_description="SGN-E342414 [cTOF-8-K15]">
      <seq>ataaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111271" stop="114967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111571" g_stop="111783" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="332" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="390" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="468" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114667" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="681" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E342414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111571" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAA</genome_strand>
        <mrna_strand>ATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317389" ref_strand="+" ref_description="SGN-E317389 [cTOA-28-K8]">
      <seq>taaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaatgtttctgaaaagccagtggtgctcggttttangatcagggatattaaccttttgatactgttctctacttcattgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111272" stop="115036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111572" g_stop="111783" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="331" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="389" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="467" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114736" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="748" r_length="281" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E317389" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111572" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCA</genome_strand>
        <mrna_strand>TAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAG-AATGTTTCTGAAAAGCCAGTGGTGCTCGGTTTTANGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298358" ref_strand="+" ref_description="SGN-E298358 [cLET-41-H13]">
      <seq>aaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgctgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaagaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111273" stop="114867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111573" g_stop="111783" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="330" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="388" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114567" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="579" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E298358" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111573" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATG</genome_strand>
        <mrna_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGCTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAAGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297334" ref_strand="+" ref_description="SGN-E297334 [cLET-29-P14]">
      <seq>aaaatcttgtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccggcccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111273" stop="114788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111573" g_stop="111783" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="330" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="388" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114488" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E297334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111573" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCT</genome_strand>
        <mrna_strand>AAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGGCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256639" ref_strand="+" ref_description="SGN-E256639 [cLEG-40-C7]">
      <seq>gtcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaagctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgaaggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaagtgaaagaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111281" stop="114859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111581" g_stop="111783" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="322" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="380" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="458" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114559" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="563" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E256639" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111581" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTA</genome_strand>
        <mrna_strand>GTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAAGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAAGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAAGTGAAAGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257354" ref_strand="+" ref_description="SGN-E257354 [cLEG-45-G19]">
      <seq>tcgagtacccagaaatcttattcatccatggcatttgctcactgcttccttactgtcccggctgatactacaaacttccacaccgctacttccatccttacccgccccttttcatcttcggtgagttcttctttttcttcctcaaacctcaaaacttgcagcctctctaatttccacaagaatttgagaatcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtatttgctttgcccctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111282" stop="114948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111582" g_stop="111783" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="321" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="379" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="457" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114648" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="651" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E257354" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111582" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGA</genome_strand>
        <mrna_strand>TCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTTGCTTTGCCCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208868" ref_strand="+" ref_description="SGN-E208868 [cLEC-51-B9]">
      <seq>gtacccagaaaacttattcattcatggcatttgctcactgcttccttactgaccaggatgatactacaaacttccacaccgctacttacatccttacccgccccttttcatcttcggtgaggacttctttttcttcctcaaacctcaaaacttgcagcctctctaattaccacaagaatttgagaatcggactcaaagaatctgttaaggctcaagcatctgaagacagcgcaccagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaagctgcatcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaagaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="111286" stop="114804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111586" g_stop="111783" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.826" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="317" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="375" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="453" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114455" g_stop="114504" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="503" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E208868" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111586" e_stop="111783"/>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAGGTAATGCCTTTTTTCTCTCTCTGACTGAGTAAATTGGGTATTTCAGTAGATTGCTAATTTGTTTTTTTTCCCTGTGTTTATCGTAGATAACGTTTACTAATTCAATTTAGTGATGGTAGTTATTGAGTTGAAAGAATTGAAATCTGGTGGTTGTTAATTTGAAAACCTTGAAATTCACGCAACTGTTTCCTTTACCCAACTTCATTGTGCGTCTATGCTATTACCGGTTAACGTCACTGTAAAGTTCACCATCCTACTATGGTTTTCTAGGCCGTTAGGTATAAATTCTCTTATTTACTTTTTTTTTTTATAAAAAAGAAAGGGGGTTGGGGTAATGGAAAGGGGATTACAAGGTGAGAAATTGTACCCTCGCCAACTAGGTGAAAGTTGAGGTAGCCAACTAGGGGTCTTTTGATCAATTATCTGCTTTTCTAGGTTAAACAATGTATAGGCTTTATACTATCCAATGAACCAAAGGACTCTTTTTAAAAAGTGTGAAGCTATAGAGATATATGGAACTTTTAGTTTTGTGAAGATTTGTTGCTGCTTTGTAAAATTTCGTGGGAGAGGATGTGTCTTATCTGAAGTGTTTGATTGGGCCATATTAGCTTTATAGAGAACAATAGTAGTAATCTTCAGTTGTTACTTGATGTCTACTTTTTTTGAGGATTATGAAAGAGTCGCTTATCCAATCATACGACTAGCATTTTCTTTGTCTTTCAAAAAGTGGACCTTGGGAACTTATTATTGCTAATTTCTCCAGTATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAG</genome_strand>
        <mrna_strand>GTACCCAGAAAACTTATTCATTCATGGCATTTGCTCACTGCTTCCTTACTGACCAGGATGATACTACAAACTTCCACACCGCTACTTACATCCTTACCCGCCCCTTTTCATCTTCGGTGAGGACTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTACCACAAGAATTTGAGAATCGGACTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCACCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAAGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372495" ref_strand="+" ref_description="SGN-E372495 [TUS-32-I2](-)">
      <seq>atcggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctatgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagatgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggataggtgaaggaagcaagccaacagccattattggtgaaattgctgataatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaatatgtatttgaaaagaccagtggtgctcggttttaggatcagggatattaaccctttgatactgttctctaattcattgaccatgaaatcaagttttacatttgtggtaagtggtaatagaacagaacaaacaaggtggttcattgctatttgcttcttaatcatgtggagagatatgaatatgttgtttactctttgaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="112245" stop="115160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="132" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="190" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="268" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114455" g_stop="114865" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="681" r_length="413" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E372495" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAA-ATGTATCTGAAAAG-CCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</genome_strand>
        <mrna_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTATGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGATGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGATAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATAATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAATATGTATTTGAAAAGACCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCCTTTGATACTGTTCTCTAATTCATTGACCATGAAATCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGGTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373169" ref_strand="+" ref_description="SGN-E373169 [TUS-32-I3](-)">
      <seq>ggactcaaagtatctgttaaggctcaagcatctgaagacagcgcagcagcagatgctttcaccaacttcaagcatgtactgttaccaattacagaccggaatccttatctctctgagggttcaagacaggctgcagcaactgccgctgctatggcaaagaagtatggagctgatataacagttgttgttattgatgaaaaggggaaagaagcatacccagagcacgagacacaactagcaagcatccgatggcatttagctgaaggtggatatcaagaattcaagctgttagagcggctaggtgaaggaagcaagccaacagccattattggtgaaattgctgatgatatgaacttggatatggtagttatgagcatggaagctatccattccaagcatgtagatgcaaaccttcttgctgagttcatcccttgccctgtattgcttttgcccctatgaagaagaaatgtatctgaaaagccagtggtgctcggttttaggatcagggatattaaccttttgatactgttctctacttcattgaccatgaactcaagttttacatttgtggtaagtggtaatagaacagaacaaacaagctggttcattgctatttgcttcttaatcatgtggagaagatatgaatatgttgtttactctttgaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="112245" stop="115160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112547" g_stop="112665" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="129" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113764" g_stop="113821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="187" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113944" g_stop="114021" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="265" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114455" g_stop="114865" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="677" r_length="412" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E373169" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112547" e_stop="112665"/>
          <exon e_start="113764" e_stop="113821"/>
          <exon e_start="113944" e_stop="114021"/>
          <exon e_start="114455" e_stop="114865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAGGTCTACTTCTTTTCTACATTTTCCTTCTTAGTATTGGTGCTTAAACAAATCAGCCCTTGCCTCCTTTAACTTAATCCTATGGGAATTATGGATTTCCAACTATTTAAGCCTCTTAGTTTGCATTTTTTTTTACAAAAAAGAATTAATTTCATTTTCCTAGTGTCATATTTGAATTCTGAAGTAGATGGTTGATGGAAAATTGTGAGATCCTCCATAAATGTAATATGTGGTGAACTTCATTCACCGTAGAATTATGTGACCGGTTTTGATTCCTCACTAGCTGTTGTTAACTGTAGCCAAAGACAGAATTACATCTCACCTCGACTATTTGTGGGGAGAGGGGGAGGACTTTAAAGGTGGAGGTTCGGGTGACTCTTAGTGGGAAAGCGGCAGGTGAGGAGAGGGGGGAGGGGCAAGATTTACAGTTCTTTTGAAACTTTATAGTGGTCATGGTGGGTTAAGCAGACAGAGGGAGAAACTATTGACAAATAAATAATGTTAGAAACTTAGAAGGATATTAACTTAACCGGACAGAAAACTGTAGTGGGTTGCAAGTGCAGAAGAAATTTAAATGGGGCGTGCTGATGGCACTATACTGTTATGGAGATAGCTCCCAGTGGCAAACCCACTGCCTCCATTGCCATTCTTATATGGAGTTAACTACCAATTTAGCAGTTTGAGCTGTTTGCATGTTATAACCACCTAATTTAAATAGGTGTAAACTGTAAAGGTTTCAATAAAATGATGTGCCCTTTTGGTTCTGAGAAAAGACATATATTGGCTAATCTTGGAACAAATTAAGTGGACTGTATCAGCACCTTTTGTCAAACTGCATTATTTATTTCTTTTGTCATCTTTCTTCCCTTTTTCTTATTTGAACATTTTCTCATCATACCTTTCTCTAAAATGCTTATCCGAACCTTTTTAAAGACTCAACTTAAGCTTATCATACATAATTGGGTTTCCTCTTCTTCGTGTTCTATTGATTAGAAGCATCCAGCAATGCCTCGCCAGTTTAGAATTCGAACAAAAAATGGCCATAGTTACTCAATTCACTGTGAACTTTATAAACATAACTTATTCTTGGTACATTATCAGGCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTGGTATGTCACCGATGTTGTGTACTATCGGTTCTTTCAAAAGCTAAACTACAGAGTTGACTTTCTTGGTACAGAAACTTTTAGTGGTAGATTTCAAGGAATCTATGTTTTTCTGATCTTTGCAGTTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAGGTGTATTTACTGTTTTTCCCTGCATTTAATAAGTATGAATCAGTTGATGGATTGTGATTTGCAACCTGGATGGGTGCACTAGACTTGCAAAACAACTGGCTTTTTGCATGCAAGCCTGTAGCACAGAGTAATTTTGGGGAACTTTCAGTATTTGGCTTGCATTATGAGACAGATTCTTCTATCTTATTATAACATGGTTATTTCATTTTTCTGCTACGGAGGTTTTGTTATGTGAGTCTGCAGCTATTTGATCATGCAGCACAGCATCCTGGTACATGGAGATAGGAATGTTGAAACATGTTCTGTTTGCTTGTATGTTGTATATGCTTTGGCCTACTTCTCATTATACTAACTACCTTGAACTCGTTCCTCACTCTTACTTTTACATTTGTTTGGTATATTTGCTGATTGGAATATGCAAACCTTTGTACAGGTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAG-AGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</genome_strand>
        <mrna_strand>TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG..........................................................................................................................TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAAGATATGAATATGTTGTTTACTCTTTGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554440" ref_strand="+" ref_description="SGN-E554440 [cTSC-4-F1]">
      <seq>cactaataataagatatggtgaaagactacgttgatccaccttcagctccgctgtttcaaacagcggagctctacaactggtctttttacagagccttgattgctgaatttgtcgcgacgcttcttttcctctacgttagcgtggctactgttatcggccacaagaagcaacttggtccctgcgatggcgttggacttgttggtattgcatgggcttttggtggcatgatttttgttctcgtgtattccactgctgggatttctggtgggcatataaacccggcagtgacgtttgggttattactagcaaggaatgtgtcattactaagagcggtggcgtatatggtggcgcagtgcttaggagccatttgcggcgttggtttagtgaaaggtgtgatgaaggatgattatacgaagcatggtggcggtgctaataccgtcgcagttggctactcagcgggcgcagcattaggtgctgagattattgctactttccttctcatgtataccgtattttccgccaccgacgccaaaaggaaagcacgtgattcacacgtcccagttctagcaccattgccaattggatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="117516" stop="115213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117216" g_stop="116952" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116951" i_stop="116883" i_length="69">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116882" g_stop="116587" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="561" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116586" i_stop="115542" i_length="1045">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115541" g_stop="115513" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="590" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="SGN-E554440" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117216" e_stop="116952"/>
          <exon e_start="116882" e_stop="116587"/>
          <exon e_start="115541" e_stop="115513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTGGTACGTAGAATTTAAACACTTTAAATATAAACAACGATTTATGAATAAAAATGTACGTATAATATATAGGTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCAGTAAGTCTCATCCATACTCATATTCATATCACACACTTTTACTTCGTTTCCAAAAATAATTATACACTACTGAATTTGGAAACATCAATGGTATAAAATGTTTAACCCTGCAAGTTTTCAAATGCGTAGAAAAGTTGGGACTACTCAAGGATTACAAATTTCCCAAGTCTTGATTTCTTCTATTAATTATATATATTACATGTCATTCGAATTATATGTAACTTCACAAGAGTTACCATAGTTTAAATTAAAATACATTGATTTATAAAATTTATTCCTATGTATAAATTAGAAACATATATTTATTTATATTTGTCATGTTGCACTTTTCGAAAGTCAATTCGATTAACTTTTAAAGATTACATTAGTTTTGTTATGCTTTTCGAAAGAAAGTTAATTCAATTAATTTTCAAAGTTAACTTAAATTACATTAGTTTTGTTACGCTTTTCAAAAGTCAATTCGATTAATTTTCAAATTTAACTTAGATTACATTAGTTTGATATTTTAAACAAAAAATTTAGATATTCAAAAATTATATATATATTTTGCATATTAATATTATTAAAAAATATATCTTAAAATGTTAGTCAAAATTCTTATAATTTGACTTTAAAAATAGAAACCATGACAAATAAGTGGACAAACTTAGAATCTATTTTTATATATTTACCAACTTTGTTTGATTCTTTTATAAAATGTTTTAAGTCTTATACACAGCAAGAAAATATCAAGTGTGTAAATTTTAGAGAACAAGGCTTAAAATCCTAACAGAAACAAAATAAACCAAGTGTTGACGGGTAGAGTTACCTAATAGTGATATGATGGAAGGAACCAAATGCAGAAATTGACCTGGGCACCACGATATAAAATTGACATATTTACGCATACAACCCCTATAATATTCATAACTGTTGAAAACTATGGATGTAACACTAACAAGACATAATTGAAAAAAAAGGAAGAGAGTGTTGAGAGATTGATATGGATGGGGATACTTACGAAGTCCAGTAAAAGAAAAGATGTTCATCGTTTGTGCACCCACAGGTTCTAGCACCATTGCCAATTGGATTCTC</genome_strand>
        <mrna_strand>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG.....................................................................GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAATGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAGCGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGCACCATTGCCAATTGGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338719" ref_strand="+" ref_description="SGN-E338719 [cTOE-21-I19]">
      <seq>cctcactatttttttcttttttcaagaatccaattatgtggtcatcaagcagtgataacaggggactctctgcttcttcttcttcatcttcatcctcatctcattcaccattttctccaagactcaaaacaatggaagaagtgtggaaagatattaatctttcttcacttcaagatcacactacgaattactctagagatcatcatcatcttcatgatcataatcatcaagctgctaattttggtggaatgattttacaagattttttggcaaggccttttgctaatgaatcttcaccagcagcagcagcagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="123912" stop="124828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124212" g_stop="124528" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="SGN-E338719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124212" e_stop="124528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</genome_strand>
        <mrna_strand>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>173</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4146" PGL_stop="760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4146" e_stop="3787"/>
            <exon e_start="2666" e_stop="2454"/>
            <exon e_start="2358" e_stop="2306"/>
            <exon e_start="2207" e_stop="2151"/>
            <exon e_start="1635" e_stop="1570"/>
            <exon e_start="1476" e_stop="1405"/>
            <exon e_start="1001" e_stop="892"/>
            <exon e_start="817" e_stop="760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.433" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.753" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4146" e_stop="3787" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3786" i_stop="2667" i_length="1120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2666" e_stop="2454" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.433" acc_prob="0.970">
            <gDNA_intron_boundary i_start="2453" i_stop="2359" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2358" e_stop="2306" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.796" acc_prob="0.519">
            <gDNA_intron_boundary i_start="2305" i_stop="2208" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2207" e_stop="2151" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2150" i_stop="1636" i_length="515"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1635" e_stop="1570" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1569" i_stop="1477" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1476" e_stop="1405" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1404" i_stop="1002" i_length="403"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1001" e_stop="892" e_length="110"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.753">
            <gDNA_intron_boundary i_start="891" i_stop="818" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="817" e_stop="760" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="3787"/>
              <exon start="2666" stop="2501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4142" stop="3787"/>
              <exon start="2666" stop="2454"/>
              <exon start="2358" stop="2306"/>
              <exon start="2207" stop="2151"/>
              <exon start="1635" stop="1570"/>
              <exon start="1476" stop="1466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4141" stop="3787"/>
              <exon start="2666" stop="2454"/>
              <exon start="2358" stop="2306"/>
              <exon start="2207" stop="2153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1573" stop="1570"/>
              <exon start="1476" stop="1405"/>
              <exon start="1001" stop="892"/>
              <exon start="817" stop="760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTGTCTTCTCCACCTAATTTATTTTATCCCTAAATCCCCCCCTTTTTTTTTCCTCCTCTCTCTGTAAACCCACATTGAATTTATTGTCTAACAATGCTCGGCGTTGAGTTAAGGATCTCCACCGTCGCCGGAGTTTTCACCGATCTACCGGAAACAAGTCGCCGGAGTGCCAGCTGGAACTGTAACTCCTCCATTGGAAATATCTCATATCATCTCTCTTCCAGAAATAGGCATTGTAGAAAGTCCAGATTCATGGTAATCTGTAGCAAGTCATCACGCGGAAGCTTTAATCGGAAATCTAATCAGAGTGATGAACCGGGTGATGATTATATTGAAGCTGTCGTTCTCGTTTCAG : AGACTATGAAGCACTACAAAATGCATATGGGTGGATTTCAAGAAGAAACAAGATGGCACTCATCTGCTCAGCTGATTCCCTCTTCTTTTCATCCTAAGGATCGTATTGCTAATGCATCATCTTTAGGGACAGGATTTCTTCGCCGTTTCAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTG : GAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGG : GATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAA : GTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAG : GCAGGGGAAAAAGATATTATTAGTGTGGATGCTCGTCCCTCCGATGCCATTAATGTTGCCAGAAGATGTAAG : GCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACTAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTACTAGATAG : TGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTATGTTGAGAAATATGAAC</gDNA_template>
            <first_frame> Y  F  C  L  L  H  L  I  Y  F  I  P  K  S  P  P  F  F  F  L  L  S  L  *  T  H  I  E  F  I  V  *  Q  C  S  A  L  S  *  G  S  P  P  S  P  E  F  S  P  I  Y  R  K  Q  V  A  G  V  P  A  G  T  V  T  P  P  L  E  I  S  H  I  I  S  L  P  E  I  G  I  V  E  S  P  D  S  W  *  S  V  A  S  H  H  A  E  A  L  I  G  N  L  I  R  V  M  N  R  V  M  I  I  L  K  L  S  F  S  F  Q  :  R  L  *  S  T  T  K  C  I  W  V  D  F  K  K  K  Q  D  G  T  H  L  L  S  *  F  P  L  L  F  I  L  R  I  V  L  L  M  H  H  L  *  G  Q  D  F  F  A  V  S  R  I  Q  L  F  F  L  R  F  P  V  M  Q  N  M  S  Y  Q  L  L  L  :  E  N  M  L  S  K  N  L  *  I  H  C  M  R  R  R  L  G :   I  A  P  T  S  S  C  F  *  G  I  Y  C  *  N  L  A  M  K :   L  K  W  *  R  L  Q  K  E  *  L  V  L  I  L  P  E  Y  F  S  T  R :   Q  G  K  K  I  L  L  V  W  M  L  V  P  P  M  P  L  M  L  P  E  D  V  R :   H  Q  Y  L  *  I  S  K  L  S  *  L  M  Q  L  E  *  V  M  E  W  T  D  L  A  E  L  S  P  P  M  M  Y  Y  *  I   : V  H  Q  M  A  P  I  Y  F  L  K  N  L  V  C  *  E  I  *   </first_frame>
            <second_frame>  I  F  V  F  S  T  *  F  I  L  S  L  N  P  P  L  F  F  S  S  S  L  C  K  P  T  L  N  L  L  S  N  N  A  R  R  *  V  K  D  L  H  R  R  R  S  F  H  R  S  T  G  N  K  S  P  E  C  Q  L  E  L  *  L  L  H  W  K  Y  L  I  S  S  L  F  Q  K  *  A  L  *  K  V  Q  I  H  G  N  L  *  Q  V  I  T  R  K  L  *  S  E  I  *  S  E  *  *  T  G  *  *  L  Y  *  S  C  R  S  R  F  R :   D  Y  E  A  L  Q  N  A  Y  G  W  I  S  R  R  N  K  M  A  L  I  C  S  A  D  S  L  F  F  S  S  *  G  S  Y  C  *  C  I  I  F  R  D  R  I  S  S  P  F  Q  E  S  N  Y  F  S  *  D  F  L  *  C  R  I  C  L  T  N  Y  C  W :   R  T  C  C  R  K  T  Y  R  F  I  A  *  G  G  D  W   : G  L  P  R  R  V  P  A  F  E  E  S  I  V  E  I  W  L  *   : S  *  N  G  E  D  Y  R  K  S  D  *  Y  L  F  C  Q  N  I  F  P  Q   : G  R  G  K  R  Y  Y  *  C  G  C  S  S  L  R  C  H  *  C  C  Q  K  M  *   : G  T  N  I  C  E  *  A  N  C  L  D  *  C  N  *  N  R  L  W  N  G  P  I  *  Q  N  *  V  H  L  *  C  I  T  R  *  :  C  I  R  W  P  R  F  T  F  *  R  T  *  Y  V  E  K  Y  E  </second_frame>
            <third_frame>   F  L  S  S  P  P  N  L  F  Y  P  *  I  P  P  F  F  F  P  P  L  S  V  N  P  H  *  I  Y  C  L  T  M  L  G  V  E  L  R  I  S  T  V  A  G  V  F  T  D  L  P  E  T  S  R  R  S  A  S  W  N  C  N  S  S  I  G  N  I  S  Y  H  L  S  S  R  N  R  H  C  R  K  S  R  F  M  V  I  C  S  K  S  S  R  G  S  F  N  R  K  S  N  Q  S  D  E  P  G  D  D  Y  I  E  A  V  V  L  V  S   : E  T  M  K  H  Y  K  M  H  M  G  G  F  Q  E  E  T  R  W  H  S  S  A  Q  L  I  P  S  S  F  H  P  K  D  R  I  A  N  A  S  S  L  G  T  G  F  L  R  R  F  K  N  P  T  I  F  L  K  I  S  C  D  A  E  Y  V  L  P  I  I  V   : G  E  H  A  V  E  K  L  I  D  S  L  H  E  E  E  T  G  :  D  C  P  D  E  F  L  L  L  R  N  L  L  L  K  S  G  Y  E  :  V  K  M  V  K  I  T  E  R  V  T  S  T  Y  F  A  R  I  F  F  H  K  :  A  G  E  K  D  I  I  S  V  D  A  R  P  S  D  A  I  N  V  A  R  R  C  K  :  A  P  I  F  V  N  K  Q  I  V  L  T  D  A  T  R  I  G  Y  G  M  D  R  S  S  R  I  K  S  T  Y  D  V  L  L  D  S :   A  S  D  G  P  D  L  L  S  E  E  L  S  M  L  R  N  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4063" stop="3787"/>
                    <exon start="2666" stop="2454"/>
                    <exon start="2358" stop="2306"/>
                    <exon start="2207" stop="2151"/>
                    <exon start="1635" stop="1570"/>
                    <exon start="1476" stop="1405"/>
                    <exon start="1001" stop="892"/>
                    <exon start="817" stop="760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCLTMLGVELRISTVAGVFTDLPETSRRSASWNCNSSIGNISYHLSSRNRHCRKSRFMVICSKSSRGSFNRKSNQSDEPGDDYIEAVVLVSETMKHYKMHMGGFQEETRWHSSAQLIPSSFHPKDRIANASSLGTGFLRRFKNPTIFLKISCDAEYVLPIIVGEHAVEKLIDSLHEEETGDCPDEFLLLRNLLLKSGYEVKMVKITERVTSTYFARIFFHKAGEKDIISVDARPSDAINVARRCKAPIFVNKQIVLTDATRIGYGMDRSSRIKSTYDVLLDSASDGPDLLSEELSMLRNMN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9228" PGL_stop="5932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9228" e_stop="9138"/>
            <exon e_start="8998" e_stop="8979"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7274"/>
            <exon e_start="6494" e_stop="6422"/>
            <exon e_start="6341" e_stop="5932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9138" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8979" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7423" e_stop="7274" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6494" e_stop="6422" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="6341" e_stop="5932" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9212" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="5935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9194" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9194" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9194" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9185" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9178" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="5958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9169" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8035" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6282" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6246" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G  Y  T  L  N  V  D  Y  L  *  S  F  *  N  F  M  M  Y  V  F  S  F  V  A  C  </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W  V  T  P  *  M  W  I  I  C  N  L  S  E  T  L  *  C  M  Y  S  L  S  L  L  V </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  L  H  L  E  C  G  L  S  V  I  F  L  K  L  Y  D  V  C  I  L  F  R  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="9138"/>
                    <exon start="8998" stop="8979"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7274"/>
                    <exon start="6494" stop="6422"/>
                    <exon start="6341" stop="6112"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRGGRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9228" e_stop="9138"/>
            <exon e_start="8998" e_stop="8979"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7274"/>
            <exon e_start="7183" e_stop="6957"/>
            <exon e_start="6494" e_stop="6422"/>
            <exon e_start="6341" e_stop="6333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.069" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9138" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8979" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7423" e_stop="7274" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.971">
            <gDNA_intron_boundary i_start="7273" i_stop="7184" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7183" e_stop="6957" e_length="227"/>
          </exon>
          <intron i_serial="6" don_prob="0.069" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6956" i_stop="6495" i_length="462"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6494" e_stop="6422" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.889">
            <gDNA_exon_boundary e_start="6341" e_stop="6333" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9220" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="7183" stop="6957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9170" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="7183" stop="6957"/>
              <exon start="6494" stop="6440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9169" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="7183" stop="6957"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9169" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="7183" stop="6974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATG</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q  L  I  K  G  H  Y  Q  Q  *  N  Q  A  F  M  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  *  S  R  V  I  I  N  N  R  I  R  L  L  C :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R :   R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T  N  Q  G  S  L  S  T  I  E  S  G  F  Y   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="9138"/>
                    <exon start="8998" stop="8979"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7274"/>
                    <exon start="7183" stop="7058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKKTLRQLCWQQSKMISSSIATLYSLSLTKWPAKTAFHMHLID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6742" e_stop="6422"/>
            <exon e_start="6341" e_stop="5932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6742" e_stop="6422" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="6341" e_stop="5932" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6742" stop="6422"/>
              <exon start="6341" stop="6032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6666" stop="6422"/>
              <exon start="6341" stop="5958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6282" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6246" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</gDNA_template>
            <first_frame> R  S  A  F  G  D  S  L  F  F  G  C  *  H  H  R  L  *  F  H  R  I  T  N  I  S  V  F  F  C  C  E  E  N  T  R  Y  *  Q  F  H  I  L  P  L  Q  G  I  H  S  L  E  Y  I  I  W  S  R  *  P  I  C  S  *  C  K  S  H  M  F  R  F  H  I  L  R  *  S  I  L  F  F  S  L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  L  H  L  E  C  G  L  S  V  I  F  L  K  L  Y  D  V  C  I  L  F  R  C  L   </first_frame>
            <second_frame>  G  V  H  L  V  I  L  F  S  L  D  V  S  I  I  G  Y  D  F  I  E  L  Q  I  F  L  F  F  F  V  V  K  R  T  P  D  I  S  N  F  I  F  F  H  Y  K  E  F  I  L  *  N  T  L  S  G  R  D  N  P  F  V  L  D  V  N  H  I  C  S  D  F  T  Y  *  D  D  L  F  C  F  S  V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G  Y  T  L  N  V  D  Y  L  *  S  F  *  N  F  M  M  Y  V  F  S  F  V  A  C  </second_frame>
            <third_frame>   E  C  I  W  *  F  S  F  L  W  M  L  A  S  *  V  M  I  S  *  N  Y  K  Y  F  C  F  F  L  L  *  R  E  H  P  I  L  A  I  S  Y  S  S  I  T  R  N  S  F  S  R  I  H  Y  L  V  E  I  T  H  L  F  L  M  *  I  T  Y  V  Q  I  S  H  I  E  M  I  Y  F  V  F  Q  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W  V  T  P  *  M  W  I  I  C  N  L  S  E  T  L  *  C  M  Y  S  L  S  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6511" stop="6422"/>
                    <exon start="6341" stop="6048"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILFFSLVENGQGLQHLVIILGFIRAQGVMVIMVIGVGIVAVVTMGTEDLQDVLHIEVGEIILPDTLHIEVGEIILLDAHLMLEGRDVRDPGHILLMKGTTLVVIDKWVSSSAMETAFVRIYKFDVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6545" stop="6422"/>
                    <exon start="6341" stop="6112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITYVQISHIEMIYFVFQSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRGGRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9228" e_stop="9138"/>
            <exon e_start="8998" e_stop="8979"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7274"/>
            <exon e_start="7156" e_stop="6957"/>
            <exon e_start="6494" e_stop="6422"/>
            <exon e_start="6341" e_stop="5932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="0.991"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.069" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9138" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8979" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7423" e_stop="7274" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7273" i_stop="7157" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7156" e_stop="6957" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="0.069" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6956" i_stop="6495" i_length="462"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6494" e_stop="6422" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6341" e_stop="5932" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7976" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="7156" stop="6957"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6282" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6246" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : CAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q  L  I  K  G  H  Y  Q  Q  *  N  Q  A  F  M  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W  V  T  P  *  M  W  I  I  C  N  L  S  E  T  L  *  C  M  Y  S  L  S  L  L  V </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  *  S  R  V  I  I  N  N  R  I  R  L  L  C :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  L  H  L  E  C  G  L  S  V  I  F  L  K  L  Y  D  V  C  I  L  F  R  C  L   </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T  N  Q  G  S  L  S  T  I  E  S  G  F  Y   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G  Y  T  L  N  V  D  Y  L  *  S  F  *  N  F  M  M  Y  V  F  S  F  V  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="9138"/>
                    <exon start="8998" stop="8979"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7274"/>
                    <exon start="7156" stop="7058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKQSKMISSSIATLYSLSLTKWPAKTAFHMHLID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6994" stop="6957"/>
                    <exon start="6494" stop="6422"/>
                    <exon start="6341" stop="6048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVIINNRIRLLCLVENGQGLQHLVIILGFIRAQGVMVIMVIGVGIVAVVTMGTEDLQDVLHIEVGEIILPDTLHIEVGEIILLDAHLMLEGRDVRDPGHILLMKGTTLVVIDKWVSSSAMETAFVRIYKFDVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="9174" e_stop="9138"/>
            <exon e_start="8998" e_stop="8270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9174" e_stop="9138" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8270" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9174" stop="9138"/>
              <exon start="8998" stop="8379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9173" stop="9138"/>
              <exon start="8998" stop="8270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9173" stop="9138"/>
              <exon start="8998" stop="8307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9173" stop="9138"/>
              <exon start="8998" stop="8491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</gDNA_template>
            <first_frame> Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  V  P  L  C  F  F  I  E  L  *  G  F  S  V  Y  L  L  H  R  L  D  P  S  N  F  P  *  L  V  L  S  L  L  G  F  F  C  L  Y  F  A  D  L  Y  F  L  Y  L  V  V  G  L  V  N  G  E  Y  I  V  L  F  I  R  L  V  G  I  S  M  W  C  K  K  I  E  W  G  L  L  D  F  G  E  F  T  L  I  C  V  L  E  R  C  *  C  V  N  L  F  *  *  R  N  G  K  V  *  I  C  F  W  K  N  C  F  *  V  Y  H  V  E  L  V  F  R  L  F  Y  W  G  M  S  L  K  H  K  T  F  L  R  I  S  Y  F  V  Y  M  G  N  S  V  Y  N  K  V  I  N  P  M  P  Y  L  C  K  G  *  G  S  I  F  S  L  S  L  I  *  S  N  V  F  Q  G  T  S  *  *  S  L  P  L  Y  G  R  Q  R  S  S  Y  L  L  I  K  L  V  I  C  *  V  F  L  E  L  E  S  T  N  Q  P  L  W  I  S  F  W  H  F  L  Q  V  K  L  L  S  M  L  M  </first_frame>
            <second_frame>  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R  Y  H  S  V  S  L  *  N  F  E  D  F  L  F  I  C  C  I  D  L  I  R  L  T  F  R  N  W  F  Y  L  Y  *  G  F  F  V  C  I  S  L  I  Y  I  F  F  I  W  L  L  A  L  *  M  V  N  T  L  F  Y  S  S  G  *  L  G  Y  L  C  G  V  K  K  L  N  G  V  C  W  I  L  G  S  S  L  *  F  V  F  W  R  D  V  N  V  L  I  F  F  N  R  E  M  V  R  Y  E  S  V  F  G  R  I  V  F  K  F  I  M  *  N  *  F  S  V  C  F  I  G  E  C  H  *  S  I  K  H  F  *  E  S  H  I  L  Y  I  W  V  I  L  Y  I  I  K  S  L  I  L  C  L  T  Y  A  R  D  K  V  Q  F  F  L  S  L  *  F  E  V  M  F  S  R  E  H  P  N  E  V  S  H  C  M  V  V  K  D  P  P  T  Y  *  *  N  W  S  Y  A  K  S  F  L  S  *  K  V  P  I  N  L  Y  G  *  V  F  G  I  F  Y  K  *  N  C  *  A  C  *  W </second_frame>
            <third_frame>   L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K  G  T  T  L  F  L  Y  R  T  L  R  I  F  C  L  F  V  A  S  T  *  S  V  *  L  S  V  I  G  F  I  F  I  R  V  F  L  S  V  F  R  *  S  I  F  S  L  F  G  C  W  P  C  E  W  *  I  H  C  F  I  H  Q  A  S  W  D  I  Y  V  V  *  K  N  *  M  G  F  V  G  F  W  G  V  H  F  D  L  C  F  G  E  M  L  M  C  *  S  F  L  I  E  K  W  *  G  M  N  L  F  L  E  E  L  F  L  S  L  S  C  R  I  S  F  P  F  V  L  L  G  N  V  T  E  A  *  N  I  S  E  N  L  I  F  C  I  Y  G  *  F  C  I  *  *  S  H  *  S  Y  A  L  L  M  Q  G  I  R  F  N  F  F  S  L  F  D  L  K  *  C  F  P  G  N  I  L  M  K  S  P  T  V  W  S  S  K  I  L  L  L  I  D  K  I  G  H  M  L  S  L  S  *  V  R  K  Y  Q  S  T  F  M  D  K  F  L  A  F  F  T  S  K  I  V  E  H  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8897" stop="8697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLGFFCLYFADLYFLYLVVGLVNGEYIVLFIRLVGISMWCKKIEWGLLDFGEFTLICVLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="9177" e_stop="9138"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7274"/>
            <exon e_start="6494" e_stop="6422"/>
            <exon e_start="6341" e_stop="5932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9177" e_stop="9138" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="9137" i_stop="8039" i_length="1099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7423" e_stop="7274" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6494" e_stop="6422" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6341" e_stop="5932" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9177" stop="9138"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8035" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6282" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6246" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTC</gDNA_template>
            <first_frame> S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  L  H  L  E  C  G  L  S  V  I  F  L  K  L  Y  D  V  C  I  L  F  R  C  L   </first_frame>
            <second_frame>  R  I  G  N  L  G  F  A  P  S  S  E  M  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G  Y  T  L  N  V  D  Y  L  *  S  F  *  N  F  M  M  Y  V  F  S  F  V  A  C  </second_frame>
            <third_frame>   V  L  A  I  *  G  S  L  H  H  P  K  W :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W  V  T  P  *  M  W  I  I  C  N  L  S  E  T  L  *  C  M  Y  S  L  S  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9160" stop="9138"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7274"/>
                    <exon start="6494" stop="6422"/>
                    <exon start="6341" stop="6112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLHHPKWYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRGGRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="9228" e_stop="9138"/>
            <exon e_start="8998" e_stop="8979"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9138" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8979" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7423" e_stop="7032" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9190" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E  G  Q  L  F  I  H  *  L  V  N  H  C  S  V  G  L  L  F  F  F  L  D  L  E  V  F  *  L  Y  S  E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  V  S  Y  L  Y  I  D  W  *  T  I  V  L  L  A  C  F  S  F  F  L  T  W  R  F  S  D  Y  I  Q  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T   </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R  S  A  I  Y  T  L  I  G  E  P  L  F  C  W  L  A  F  L  F  S  *  L  G  G  F  L  I  I  F  R  R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="9138"/>
                    <exon start="8998" stop="8979"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7247"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKVSYLYIDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="9193" e_stop="8491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9193" e_stop="8491" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9193" stop="8491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</gDNA_template>
            <first_frame> Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W  Q  A  L  L  S  L  I  S  H  Y  I  F  L  L  F  N  I  Y  V  F  F  C  I  F  S  E  F  F  N  L  I  N  C  R  N  N  K  F  Y  H  L  Y  D  F  L  Q  A  D  S  P  R  K  R  Y  H  S  V  S  L  *  N  F  E  D  F  L  F  I  C  C  I  D  L  I  R  L  T  F  R  N  W  F  Y  L  Y  *  G  F  F  V  C  I  S  L  I  Y  I  F  F  I  W  L  L  A  L  *  M  V  N  T  L  F  Y  S  S  G  *  L  G  Y  L  C  G  V  K  K  L  N  G  V  C  W  I  L  G  S  S  L  *  F  V  F  W  R  D  V  N  V  L  I  F  F  N  R  E  M  V  R  Y  E  S  V  F  G  R  I  V  F  K  F  I  M  *  N  *  F  S  V  C  F  I  G  E  C  H  *  S  I  K  H  F  *  E  S  H  I  L  Y  I  W  V  I  L  Y  I  I  K  S  L  I  L  C  L  T  Y  </first_frame>
            <second_frame>  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N  G  K  L  C  S  L  *  S  P  I  I  S  F  F  Y  L  T  Y  M  C  F  F  A  Y  F  Q  N  F  L  T  *  L  I  V  E  T  T  N  F  I  I  F  M  I  S  C  R  L  I  L  H  A  K  G  T  T  L  F  L  Y  R  T  L  R  I  F  C  L  F  V  A  S  T  *  S  V  *  L  S  V  I  G  F  I  F  I  R  V  F  L  S  V  F  R  *  S  I  F  S  L  F  G  C  W  P  C  E  W  *  I  H  C  F  I  H  Q  A  S  W  D  I  Y  V  V  *  K  N  *  M  G  F  V  G  F  W  G  V  H  F  D  L  C  F  G  E  M  L  M  C  *  S  F  L  I  E  K  W  *  G  M  N  L  F  L  E  E  L  F  L  S  L  S  C  R  I  S  F  P  F  V  L  L  G  N  V  T  E  A  *  N  I  S  E  N  L  I  F  C  I  Y  G  *  F  C  I  *  *  S  H  *  S  Y  A  L  L  M </second_frame>
            <third_frame>   I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  A  S  F  A  L  S  N  L  P  L  Y  L  S  S  I  *  H  I  C  V  F  L  H  I  F  R  I  F  *  P  N  *  L  S  K  Q  Q  I  L  S  S  L  *  F  L  A  G  *  F  S  T  Q  K  V  P  L  C  F  F  I  E  L  *  G  F  S  V  Y  L  L  H  R  L  D  P  S  N  F  P  *  L  V  L  S  L  L  G  F  F  C  L  Y  F  A  D  L  Y  F  L  Y  L  V  V  G  L  V  N  G  E  Y  I  V  L  F  I  R  L  V  G  I  S  M  W  C  K  K  I  E  W  G  L  L  D  F  G  E  F  T  L  I  C  V  L  E  R  C  *  C  V  N  L  F  *  *  R  N  G  K  V  *  I  C  F  W  K  N  C  F  *  V  Y  H  V  E  L  V  F  R  L  F  Y  W  G  M  S  L  K  H  K  T  F  L  R  I  S  Y  F  V  Y  M  G  N  S  V  Y  N  K  V  I  N  P  M  P  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9160" stop="8957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLHHPKWQALLSLISHYIFLLFNIYVFFCIFSEFFNLINCRNNKFYHLYDFLQADSPRKRYHSVSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8897" stop="8697"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLGFFCLYFADLYFLYLVVGLVNGEYIVLFIRLVGISMWCKKIEWGLLDFGEFTLICVLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23853" PGL_stop="16103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23853" e_stop="22748"/>
            <exon e_start="22476" e_stop="22360"/>
            <exon e_start="21829" e_stop="21635"/>
            <exon e_start="19985" e_stop="19683"/>
            <exon e_start="19602" e_stop="19534"/>
            <exon e_start="19402" e_stop="19255"/>
            <exon e_start="18795" e_stop="18647"/>
            <exon e_start="17988" e_stop="17830"/>
            <exon e_start="16610" e_stop="16410"/>
            <exon e_start="16314" e_stop="16103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23853" e_stop="22748" e_length="1106"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.925">
            <gDNA_intron_boundary i_start="22747" i_stop="22477" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22476" e_stop="22360" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.956">
            <gDNA_intron_boundary i_start="22359" i_stop="21830" i_length="530"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21829" e_stop="21635" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21634" i_stop="19986" i_length="1649"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="19985" e_stop="19683" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19682" i_stop="19603" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19602" e_stop="19534" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="19533" i_stop="19403" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="19402" e_stop="19255" e_length="148"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19254" i_stop="18796" i_length="459"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18795" e_stop="18647" e_length="149"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="18646" i_stop="17989" i_length="658"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17988" e_stop="17830" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.790">
            <gDNA_intron_boundary i_start="17829" i_stop="16611" i_length="1219"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16610" e_stop="16410" e_length="201"/>
          </exon>
          <intron i_serial="9" don_prob="0.831" acc_prob="0.970">
            <gDNA_intron_boundary i_start="16409" i_stop="16315" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16314" e_stop="16103" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23853" stop="23172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23845" stop="23047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23703" stop="23005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23231" stop="22809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22931" stop="22748"/>
              <exon start="22476" stop="22360"/>
              <exon start="21829" stop="21696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21744" stop="21635"/>
              <exon start="19985" stop="19683"/>
              <exon start="19602" stop="19534"/>
              <exon start="19402" stop="19257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19353" stop="19255"/>
              <exon start="18795" stop="18647"/>
              <exon start="17988" stop="17830"/>
              <exon start="16610" stop="16410"/>
              <exon start="16314" stop="16103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACG : GCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAG : GTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTCCT : GCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGTCTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG : ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAG : AACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG : GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAG : AGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAG : GTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAG : ATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATT</gDNA_template>
            <first_frame> T  S  T  A  M  V  S  P  V  R  S  R  K  I  S  A  K  A  N  N  L  Q  L  F  I  T  T  *  R  H  P  F  F  S  S  I  F  K  H  N  L  S  S  S  S  L  *  R  W  Q  K  I  H  L  R  K  T  S  S  V  Y  M  E  I  W  S  F  T  S  F  K  P  V  I  Y  P  T  W  T  *  L  L  S  V  Y  A  A  A  S  Q  P  V  M  S  A  G  N  L  K  L  D  P  L  P  T  T  E  T  A  N  Y  P  M  *  K  A  P  T  R  K  S  T  T  G  V  *  S  L  V  T  H  M  L  L  C  V  H  P  I  P  L  L  L  V  H  V  L  Y  P  I  H  K  T  L  F  G  M  S  I  S  V  S  L  *  H  T  L  W  T  A  W  I  F  V  L  K  M  M  M  F  S  V  L  K  L  W  V  K  L  Q  S  R  R  K  R  *  P  P  V  R  W  F  P  A  G  F  P  S  L  A  L  Q  G  N  L  Q  N  P  I  R  L  S  G  Y  G  *  N  S  F  H  M  I  Q  T  H  C  I  S  E  E  L  L  Q  I  L  S  I  *  G  *  G  I  R  T  S  H  *  E  K  G  V  P  *  S  Y  T  K  M  L  T  L  A  I  S  L  S  C  R  K  S  S  W  K  T  I  Q  P  L  N  T  T  N  A  G  K  I  Y  V  M  Q  L  Q  R  L  I  T  *  F  T  L  L  G  G  L  F  F  T  K  S  S  *  F  E  S  P  P  G  H  C  R  A  A  V  T  *  H  L  V  N  Y  L  N  I  S  P  K  R  G  C  G  F  C  C  *  F  G  M  I  K  L  P  M  I  S  S  L  L  T  R :   Q  E  *  W  E  L  T  T  R  K  P  G  S  F  L  S  I  P  L  *  Y  A  F  C  H  H  V  M  L  A  V  S  S  A  L  S  S  N  R :   *  L  E  P  C  L  H  T  I  R  S  V  F  W  L  I  R  R  H  L  V  I  I  E  K  *  Q  H  S  *  E  V  W  I  S  A  M  V  D  M  I  H  L  N  I  A  Y  S  M  T  L  T  L  Y  L  K  T  T  F  I  S  L  H  F  L :   Q  G  P  R  L  Q  G  N  H  G  M  I  C  I  A  E  L  M  D  L  L  Y  M  M  C  L  *  I  L  L  N  D  G  G  K  R  Q  S  G  G  N  S  S  S  L  R  K  Q  C  L  I  G  M  M  M  L  C  *  K  L  S  V  S  H  G  Y  S  A  L  L  L  L  F  *  R  I  V  L  Q  S  Q  R  M  I  L  N  Y  M  Y  M  G  K  I  I  Q  K  I  G  M  Y  R :   S  S  V  P  L  I  L  V  Q  C  R  A  F  P  R  R  L  T  L  R  R  H  R :   T  L  S  A  Q  K  I  *  W  *  I  K  A  L  K  P  H  I  F  R  Q  *  D  Q  L  S  I  S  Y  I  L  K  I  S  I  F  L  D  R  H  M  L  G  N  H  T  K  M  Q  :  E  L  I  I  *  Y  R  W  N  W  H  *  K  S  L  V  K  L  E  L  G  N  D  F  V  Y  M  L  S  C  P  C  G  L  K  G  T  P  S  Q  S  L  C  R  K  Y  S  S  G  R :   A  R  Q  Y  R  *  C  I  K  L  L  R  Q  S  S  N  R  C  R  F  W  T  H  I  H  K  I  I  *  I  S  T  A  L  V  T  V  R  K  F  Q  A  L  L  L  N  L  L  V  M  V  I  R :   S  Q  T  H  I  S  F  S  V  S  *  Y  M  F  M  P  K  E  *  *  W  M  M  S  M  L  *  W  A  L  P  T  *  I  N  D  P  *  L  G  R  K  I  Q  R  *  L  W  V  P  T  S  L  I  M  H  G  Q  K  S  K  G  V  H  G  D  R :   S  M  D  T  E  C  P  Y  G  Q  N  T  L  G  G  *  K  N  V  S  R  N  Q  R  R  *  H  A  *  G  R  *  M  R  L  L  K  E  T  G  R  V  T  Q  L  K  S  S  L  N  Y  M  D  I  F  S  S  I  Q  Y  M  *  A  R  T  G  K  *  V  H  </first_frame>
            <second_frame>  P  P  P  L  W  C  H  L  F  G  V  V  K  S  Q  Q  K  P  T  T  Y  S  Y  S  S  Q  R  D  A  T  H  F  S  L  L  S  S  N  T  T  F  L  L  L  L  C  E  D  G  R  K  F  I  S  G  K  L  H  L  F  T  W  R  F  G  A  S  H  H  S  S  P  S  F  T  Q  H  G  L  N  F  *  A  Y  T  P  L  L  H  S  L  *  C  L  P  E  T  S  N  W  I  H  C  R  R  R  K  R  R  T  T  Q  C  E  K  H  R  P  E  N  P  P  P  E  Y  N  H  *  *  P  I  C  C  C  V  C  T  P  Y  R  S  C  S  Y  T  C  Y  T  Q  F  T  K  P  C  L  G  *  A  F  P  Y  P  F  S  T  P  Y  G  L  L  G  F  S  C  *  R  *  *  C  F  R  C  S  S  Y  G  *  S  Y  N  P  G  G  K  D  S  L  R  *  G  G  F  R  L  V  S  R  H  W  R  F  R  E  I  S  K  T  R  Y  G  S  P  V  M  D  E  I  R  S  I  *  Y  K  P  I  V  *  A  R  N  C  F  R  S  S  V  F  R  G  K  E  Y  V  L  P  I  E  K  R  E  F  R  E  A  I  P  R  C  S  R  *  R  *  V  *  A  A  G  N  P  V  G  K  Q  Y  N  L  *  T  Q  Q  M  L  G  R  Y  M  L  C  N  Y  R  G  S  S  L  D  L  H  C  W  V  V  C  F  S  Q  S  Q  V  S  S  R  A  H  Q  A  I  A  A  R  R  *  L  D  T  W  *  I  T  *  I  *  V  P  R  G  G  A  G  S  V  V  S  L  G  *  *  N  F  P  *  *  V  L  Y  *  H   : G  R  S  N  G  N  S  R  R  G  N  Q  E  V  F  *  A  F  L  C  N  M  R  F  V  T  T  L  C  *  Q  *  A  Q  P  Y  Q  A  T   : G  S  W  N  H  V  Y  T  P  S  E  V  C  S  G  *  Y  A  G  T  W  *  *  *  K  S  N  S  I  L  R  R  S  G  S  L  R  W  S  I  *  Y  T  *  T  S  L  I  P  *  P  *  H  C  I  *  R  R  R  S  S  A  Y  I  S   : C  R  D  Q  G  S  K  A  T  M  A  *  F  A  L  Q  N  *  W  T  C  C  I  *  C  A  Y  K  F  C  S  T  M  E  E  S  D  K  V  E  G  I  Q  V  L  *  E  N  N  V  S  L  A  *  *  C  Y  A  K  N  *  A  Y  L  M  D  T  Q  P  C  F  C  C  F  K  G  *  Y  C  N  P  R  G  *  S  *  T  T  C  I  W  G  R  S  F  R  K  L  A  C  T   : D  L  P  F  H  *  F  W  F  S  A  G  L  S  Q  D  D  *  R  C  A  G  T   : E  P  C  L  L  K  K  S  D  G  R  *  K  H  *  S  R  I  Y  S  G  N  K  I  S  S  A  F  H  I  Y  *  K  S  V  F  S  W  I  V  I  C  L  G  I  I  Q  R  C  R :   S  *  S  S  D  T  D  G  I  G  T  E  N  H  *  *  N  *  S  *  G  T  I  L  C  I  C  C  R  A  H  V  A  *  R  G  P  Q  V  N  H  Y  A  G  N  T  L  L  A   : E  P  D  N  T  D  D  V  S  S  Y  C  D  R  A  Q  I  D  A  D  F  G  L  T  S  T  R  L  F  K  F  L  L  P  W  *  P  *  G  N  S  R  L  Y  C  S  I  F  W  *  W  *  *   : G  L  R  L  I  *  V  S  A  F  H  D  I  C  S  C  Q  R  N  D  S  G  *  *  V  C  Y  N  G  L  C  Q  H  K  S  T  I  L  S  W  V  E  R  Y  R  D  S  Y  G  C  L  P  A  S  L  C  M  D  R  K  A  K  A  S  T  G  T   : D  L  W  I  Q  N  V  P  M  G  R  T  P  W  E  D  R  R  M  F  Q  G  T  R  G  A  N  M  R  E  E  G  E  *  G  C  *  R  K  L  E  E  L  H  S  *  K  V  H  S  T  T  W  T  S  S  Q  V  S  N  T  C  R  R  G  R  E  S  R  S  I </second_frame>
            <third_frame>   L  H  R  Y  G  V  T  C  S  E  S  *  N  L  S  K  S  Q  Q  L  T  V  I  H  H  N  V  T  P  P  I  F  L  F  Y  L  Q  T  Q  P  F  F  F  F  S  V  K  M  A  E  N  S  S  Q  E  N  F  I  C  L  H  G  D  L  E  L  H  I  I  Q  A  R  H  L  P  N  M  D  L  T  S  E  R  I  R  R  C  F  T  A  C  D  V  C  R  K  P  Q  T  G  S  T  A  D  D  G  N  G  E  L  P  N  V  K  S  T  D  Q  K  I  H  H  R  S  I  I  T  S  D  P  Y  V  A  V  C  A  P  H  T  A  L  A  R  T  R  V  I  P  N  S  Q  N  P  V  W  D  E  H  F  R  I  P  L  A  H  P  M  D  C  L  D  F  R  V  K  D  D  D  V  F  G  A  Q  V  M  G  K  V  T  I  P  A  E  K  I  A  S  G  E  V  V  S  G  W  F  P  V  I  G  A  S  G  K  S  P  K  P  D  T  A  L  R  L  W  M  K  F  V  P  Y  D  T  N  P  L  Y  K  R  G  I  A  S  D  P  Q  Y  L  G  V  R  N  T  Y  F  P  L  R  K  G  S  S  V  K  L  Y  Q  D  A  H  V  S  D  K  F  K  L  P  E  I  Q  L  E  N  N  T  T  F  E  H  N  K  C  W  E  D  I  C  Y  A  I  T  E  A  H  H  L  I  Y  I  V  G  W  S  V  F  H  K  V  K  L  V  R  E  P  T  R  P  L  P  R  G  G  D  L  T  L  G  E  L  L  K  Y  K  S  Q  E  G  V  R  V  L  L  L  V  W  D  D  K  T  S  H  D  K  F  F  I  N  T  :  A  G  V  M  G  T  H  D  E  E  T  R  K  F  F  K  H  S  S  V  I  C  V  L  S  P  R  Y  A  S  S  K  L  S  L  I  K  Q  Q  :  V  V  G  T  M  F  T  H  H  Q  K  C  V  L  V  D  T  Q  A  P  G  N  N  R  K  V  T  A  F  L  G  G  L  D  L  C  D  G  R  Y  D  T  P  E  H  R  L  F  H  D  L  D  T  V  F  K  D  D  V  H  Q  P  T  F  P  :  A  G  T  K  A  P  R  Q  P  W  H  D  L  H  C  R  I  D  G  P  A  V  Y  D  V  L  I  N  F  A  Q  R  W  R  K  A  T  K  W  R  E  F  K  F  F  K  K  T  M  S  H  W  H  D  D  A  M  L  K  I  E  R  I  S  W  I  L  S  P  A  F  A  V  L  K  D  S  T  A  I  P  E  D  D  P  K  L  H  V  Y  G  E  D  H  S  E  N  W  H  V  Q  :  I  F  R  S  I  D  S  G  S  V  Q  G  F  P  K  T  I  D  V  A  Q  A  Q  :  N  L  V  C  S  K  N  L  M  V  D  K  S  I  E  A  A  Y  I  Q  A  I  R  S  A  Q  H  F  I  Y  I  E  N  Q  Y  F  L  G  S  S  Y  A  W  E  S  Y  K  D  A   : G  A  D  H  L  I  P  M  E  L  A  L  K  I  T  S  K  I  R  A  R  E  R  F  C  V  Y  V  V  V  P  M  W  P  E  G  D  P  K  S  I  T  M  Q  E  I  L  F  W  Q  :  S  Q  T  I  Q  M  M  Y  Q  V  I  A  T  E  L  K  S  M  Q  I  L  D  S  H  P  Q  D  Y  L  N  F  Y  C  L  G  N  R  E  E  I  P  G  S  I  A  Q  S  S  G  N  G  D  K  :  V  S  D  S  Y  K  F  Q  R  F  M  I  Y  V  H  A  K  G  M  I  V  D  D  E  Y  V  I  M  G  S  A  N  I  N  Q  R  S  L  A  G  S  K  D  T  E  I  A  M  G  A  Y  Q  P  H  Y  A  W  T  E  K  Q  R  R  P  R  G  Q  :  I  Y  G  Y  R  M  S  L  W  A  E  H  L  G  R  I  E  E  C  F  K  E  P  E  A  L  T  C  V  R  K  V  N  E  V  A  E  G  N  W  K  S  Y  T  A  E  K  F  T  Q  L  H  G  H  L  L  K  Y  P  I  H  V  G  A  D  G  K  V  G  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23815" stop="22748"/>
                    <exon start="22476" stop="22360"/>
                    <exon start="21829" stop="21635"/>
                    <exon start="19985" stop="19683"/>
                    <exon start="19602" stop="19534"/>
                    <exon start="19402" stop="19255"/>
                    <exon start="18795" stop="18647"/>
                    <exon start="17988" stop="17830"/>
                    <exon start="16610" stop="16410"/>
                    <exon start="16314" stop="16105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2619</number_coding_nucleotides>
                  <number_encoded_amino_acids>873</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSKSQQLTVIHHNVTPPIFLFYLQTQPFFFFSVKMAENSSQENFICLHGDLELHIIQARHLPNMDLTSERIRRCFTACDVCRKPQTGSTADDGNGELPNVKSTDQKIHHRSIITSDPYVAVCAPHTALARTRVIPNSQNPVWDEHFRIPLAHPMDCLDFRVKDDDVFGAQVMGKVTIPAEKIASGEVVSGWFPVIGASGKSPKPDTALRLWMKFVPYDTNPLYKRGIASDPQYLGVRNTYFPLRKGSSVKLYQDAHVSDKFKLPEIQLENNTTFEHNKCWEDICYAITEAHHLIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGELLKYKSQEGVRVLLLVWDDKTSHDKFFINTAGVMGTHDEETRKFFKHSSVICVLSPRYASSKLSLIKQQVVGTMFTHHQKCVLVDTQAPGNNRKVTAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDVHQPTFPAGTKAPRQPWHDLHCRIDGPAVYDVLINFAQRWRKATKWREFKFFKKTMSHWHDDAMLKIERISWILSPAFAVLKDSTAIPEDDPKLHVYGEDHSENWHVQIFRSIDSGSVQGFPKTIDVAQAQNLVCSKNLMVDKSIEAAYIQAIRSAQHFIYIENQYFLGSSYAWESYKDAGADHLIPMELALKITSKIRARERFCVYVVVPMWPEGDPKSITMQEILFWQSQTIQMMYQVIATELKSMQILDSHPQDYLNFYCLGNREEIPGSIAQSSGNGDKVSDSYKFQRFMIYVHAKGMIVDDEYVIMGSANINQRSLAGSKDTEIAMGAYQPHYAWTEKQRRPRGQIYGYRMSLWAEHLGRIEECFKEPEALTCVRKVNEVAEGNWKSYTAEKFTQLHGHLLKYPIHVGADGKVGP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19796" e_stop="19683"/>
            <exon e_start="19602" e_stop="19255"/>
            <exon e_start="18795" e_stop="18555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19796" e_stop="19683" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19682" i_stop="19603" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19602" e_stop="19255" e_length="348"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19254" i_stop="18796" i_length="459"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="18795" e_stop="18555" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19796" stop="19683"/>
              <exon start="19602" stop="19255"/>
              <exon start="18795" stop="18555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG : ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG : GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATAC</gDNA_template>
            <first_frame> S  W  I  L  S  P  A  F  A  V  L  K  D  S  T  A  I  P  E  D  D  P  K  L  H  V  Y  G  E  D  H  S  E  N  W  H  V  Q  :  I  F  R  S  I  D  S  G  S  V  Q  G  F  P  K  T  I  D  V  A  Q  A  Q  A  R  K  P  *  P  L  F  Y  L  *  T  F  A  K  V  A  V  I  S  *  E  H  *  E  E  I  L  S  S  P  C  T  S  H  F  L  *  R  C  I  F  C  R  T  L  S  A  Q  K  I  *  W  *  I  K  A  L  K  P  H  I  F  R  Q  *  D  Q  L  S  I  S  Y  I  L  K  I  S  I  F  L  D  R  H  M  L  G  N  H  T  K  M  Q  :  E  L  I  I  *  Y  R  W  N  W  H  *  K  S  L  V  K  L  E  L  G  N  D  F  V  Y  M  L  S  C  P  C  G  L  K  G  T  P  S  Q  S  L  C  R  K  Y  S  S  G  R  *  F  S  *  N  S  L  I  M  S  F  G  F  Y  E  E  A  R  Q  F  *  M  S  N  D  *  V  I  L  I  </first_frame>
            <second_frame>  H  G  Y  S  A  L  L  L  L  F  *  R  I  V  L  Q  S  Q  R  M  I  L  N  Y  M  Y  M  G  K  I  I  Q  K  I  G  M  Y  R :   S  S  V  P  L  I  L  V  Q  C  R  A  F  P  R  R  L  T  L  R  R  H  R  Q  G  N  H  S  L  C  S  I  Y  E  L  L  L  K  *  L  *  *  V  R  N  T  R  K  K  S  C  L  P  L  A  L  H  I  F  F  S  V  V  S  F  A  E  P  C  L  L  K  K  S  D  G  R  *  K  H  *  S  R  I  Y  S  G  N  K  I  S  S  A  F  H  I  Y  *  K  S  V  F  S  W  I  V  I  C  L  G  I  I  Q  R  C  R :   S  *  S  S  D  T  D  G  I  G  T  E  N  H  *  *  N  *  S  *  G  T  I  L  C  I  C  C  R  A  H  V  A  *  R  G  P  Q  V  N  H  Y  A  G  N  T  L  L  A  G  N  F  R  E  T  L  *  L  C  L  L  D  F  M  K  K  L  G  S  F  K  *  A  M  I  R  *  Y  *  Y </second_frame>
            <third_frame>   M  D  T  Q  P  C  F  C  C  F  K  G  *  Y  C  N  P  R  G  *  S  *  T  T  C  I  W  G  R  S  F  R  K  L  A  C  T   : D  L  P  F  H  *  F  W  F  S  A  G  L  S  Q  D  D  *  R  C  A  G  T  G  K  E  T  I  A  F  V  L  F  M  N  F  C  *  S  S  C  N  K  L  G  T  L  G  R  N  L  V  F  P  L  H  F  T  F  S  L  A  L  Y  L  L  Q  N  L  V  C  S  K  N  L  M  V  D  K  S  I  E  A  A  Y  I  Q  A  I  R  S  A  Q  H  F  I  Y  I  E  N  Q  Y  F  L  G  S  S  Y  A  W  E  S  Y  K  D  A   : G  A  D  H  L  I  P  M  E  L  A  L  K  I  T  S  K  I  R  A  R  E  R  F  C  V  Y  V  V  V  P  M  W  P  E  G  D  P  K  S  I  T  M  Q  E  I  L  F  W  Q  V  I  F  V  K  L  F  D  Y  V  F  W  I  L  *  R  S  *  A  V  L  N  E  Q  *  L  G  D  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19489" stop="19255"/>
                    <exon start="18795" stop="18602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCNKLGTLGRNLVFPLHFTFSLALYLLQNLVCSKNLMVDKSIEAAYIQAIRSAQHFIYIENQYFLGSSYAWESYKDAGADHLIPMELALKITSKIRARERFCVYVVVPMWPEGDPKSITMQEILFWQVIFVKLFDYVFWIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19796" stop="19683"/>
                    <exon start="19602" stop="19519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWILSPAFAVLKDSTAIPEDDPKLHVYGEDHSENWHVQIFRSIDSGSVQGFPKTIDVAQAQARKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23384" PGL_stop="23833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23384" e_stop="23833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="23384" e_stop="23833" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23384" stop="23833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAAAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGAACAGGT</gDNA_template>
            <first_frame> I  P  N  R  V  L  *  I  G  Y  N  T  C  T  S  K  S  G  M  G  C  T  H  S  N  I  W  V  T  S  D  Y  T  P  V  V  D  F  L  V  G  A  F  H  I  G  *  F  A  V  S  V  V  G  S  G  S  S  L  R  F  P  A  D  I  T  G  C  E  A  A  A  Y  T  L  R  S  *  V  H  V  G  *  M  T  G  L  N  D  V  K  L  Q  I  S  M  *  T  D  E  V  F  L  R  *  I  F  C  H  L  H  R  E  E  E  E  R  L  C  L  K  I  E  E  K  N  G  W  R  H  V  V  M  N  N  C  K  L  L  A  F  A  E  I  L  R  L  R  T  G </first_frame>
            <second_frame>  S  Q  T  G  F  C  E  L  G  I  T  R  V  R  A  R  A  V  W  G  A  H  T  A  T  Y  G  S  L  V  I  I  L  R  W  W  I  F  W  S  V  L  F  T  L  G  S  S  P  F  P  S  S  A  V  D  P  V  *  G  F  R  Q  T  S  Q  A  V  K  Q  R  R  I  R  S  E  V  K  S  M  L  G  K  *  R  A  *  M  M  *  S  S  K  S  P  C  K  Q  M  K  F  S  *  D  E  F  S  A  I  F  T  E  K  K  K  K  G  C  V  *  R  *  K  R  K  M  G  G  V  T  L  *  *  I  T  V  S  C  W  L  L  L  R  F  Y  D  S  E  Q   </second_frame>
            <third_frame>   P  K  Q  G  F  V  N  W  V  *  H  V  Y  E  Q  E  R  Y  G  V  H  T  Q  Q  H  M  G  H  *  *  L  Y  S  G  G  G  F  S  G  R  C  F  S  H  W  V  V  R  R  F  R  R  R  Q  W  I  Q  F  E  V  S  G  R  H  H  R  L  *  S  S  G  V  Y  A  Q  K  L  S  P  C  W  V  N  D  G  L  E  *  C  E  A  P  N  L  H  V  N  R  *  S  F  P  E  M  N  F  L  P  S  S  Q  R  R  R  R  K  V  V  F  E  D  R  R  E  K  W  V  A  S  R  C  D  E  *  L  *  V  V  G  F  C  *  D  F  T  T  P  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0159F19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27944" PGL_stop="25997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27944" e_stop="27029"/>
            <exon e_start="26762" e_stop="26691"/>
            <exon e_start="26508" e_stop="26452"/>
            <exon e_start="26375" e_stop="25997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27944" e_stop="27029" e_length="916"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27028" i_stop="26763" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26762" e_stop="26691" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.798">
            <gDNA_intron_boundary i_start="26690" i_stop="26509" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26508" e_stop="26452" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="26451" i_stop="26376" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="26375" e_stop="25997" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27944" stop="27120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27639" stop="27029"/>
              <exon start="26762" stop="26691"/>
              <exon start="26508" stop="26452"/>
              <exon start="26375" stop="26251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26485" stop="26452"/>
              <exon start="26375" stop="25997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG : TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG : CCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG : TCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAATAAAGGAAA</gDNA_template>
            <first_frame> V  H  C  I  S  M  R  R  C  *  N  K  L  L  R  Y  H  Y  L  A  T  W  K  V  V  L  N  L  A  *  H  L  D  V  H  L  S  V  E  P  H  I  T  M  E  *  C  L  Q  I  I  C  S  A  Q  I  C  G  C  H  R  L  Q  M  L  N  F  L  R  M  W  V  A  W  L  S  L  P  L  H  P  L  V  T  V  H  H  P  L  V  T  A  H  H  P  L  V  T  A  R  P  L  Q  D  T  V  P  L  P  P  V  I  A  P  H  L  L  V  T  A  P  L  P  P  L  I  A  P  A  P  L  A  T  A  R  Q  V  Q  H  I  L  Q  P  V  L  H  T  H  P  H  H  P  V  I  V  Q  H  L  Q  A  I  A  Q  P  R  L  A  T  A  Q  H  H  L  A  T  A  L  L  L  Q  R  T  A  P  L  L  R  P  T  A  L  L  L  R  P  T  A  P  L  L  H  L  T  A  P  L  R  H  L  T  A  P  L  H  L  L  T  A  P  H  R  L  H  I  A  P  P  H  P  L  I  V  R  L  L  H  H  I  V  R  L  L  L  L  T  V  L  P  P  L  V  T  A  Q  H  L  P  A  I  A  Q  H  H  H  P  T  V  Q  H  H  Q  V  T  I  P  R  R  D  T  A  P  P  L  R  I  R  Q  L  A  R  S  C  L  L  L  V  H  T  A  R  H  L  Q  V  T   : V  P  H  H  H  R  T  L  Q  H  L  H  H  I  L  L  Q  A  Q  P  I  V  P  A   : A  H  T  T  T  Q  V  Q  A  Q  I  I  V  P  V  L  P  S  T   : V  Q  V  Q  G  T  H  Q  V  L  L  G  I  H  H  H  L  L  A  S  T  P  H  V  *  V  R  E  T  T  E  V  S  K  M  T  R  L  G  D  H  *  G  G  N  E  V  V  F  T  *  N  F  N  L  S  V  A  K  L  A  H  *  S  L  L  C  F  L  K  A  *  D  C  C  I  I  F  F  E  E  H  R  L  C  S  S  F  W  V  S  L  F  Q  S  R  I  L  W  D  Y  I  I  *  R  C  R  K  H  G  S  F  F  *  S  S  V  R  T  *  V  F  S  N  K  G   </first_frame>
            <second_frame>  F  I  V  S  Q  *  G  D  V  E  T  S  Y  *  D  T  I  T  *  L  H  G  R  W  S  *  I  W  H  D  T  W  T  F  T  Y  Q  W  N  P  I  S  R  W  N  D  V  S  K  L  F  A  Q  P  K  Y  A  D  V  T  D  Y  R  C  S  I  F  S  V  C  G  W  H  G  F  L  S  H  F  I  P  W  L  Q  S  I  I  P  W  L  Q  P  I  I  P  W  L  Q  P  D  L  S  R  I  Q  S  H  F  P  R  L  *  P  H  I  S  W  L  Q  P  H  F  P  H  L  *  P  Q  L  P  W  L  Q  P  D  K  S  S  I  F  S  N  Q  S  F  I  L  T  H  I  T  Q  L  *  S  N  I  S  K  L  *  P  N  L  A  *  L  Q  P  N  I  T  *  L  Q  P  Y  F  S  S  V  Q  P  H  F  S  G  L  Q  P  Y  F  S  G  L  Q  P  H  F  S  I  L  Q  P  H  F  A  I  L  Q  P  H  F  T  F  L  Q  P  H  I  A  F  I  *  P  H  L  T  L  L  *  S  D  F  S  I  I  *  S  D  F  S  C  L  Q  S  Y  L  P  W  L  Q  P  N  I  S  Q  L  *  P  N  I  T  I  L  Q  S  N  I  T  K  L  Q  S  L  G  E  I  Q  P  L  P  C  V  F  A  N  *  P  E  A  V  S  F  *  S  I  Q  P  V  I  S  K  L  Q  :  S  H  I  T  I  V  L  S  N  I  S  I  I  F  S  F  K  P  N  L  *  S  Q  Q  :  P  I  Q  Q  L  R  Y  K  P  R  L  *  S  Q  F  S  P  V  Q  :  S  K  C  R  V  L  T  K  C  S  W  V  F  T  I  I  Y  *  P  V  H  P  T  C  E  *  E  R  Q  Q  K  C  Q  R  *  Q  G  W  V  I  I  R  E  G  T  K  L  Y  L  L  E  T  L  I  F  Q  L  L  N  W  L  I  S  H  Y  C  A  F  *  R  H  K  I  A  V  *  Y  F  S  K  N  T  G  F  V  L  V  S  G  F  L  F  S  S  L  E  Y  F  G  I  I  L  Y  K  D  A  E  N  M  V  P  S  F  K  V  V  *  E  L  R  C  F  R  I  K  E  </second_frame>
            <third_frame>   S  L  Y  L  N  E  E  M  L  K  Q  A  I  E  I  P  L  P  S  Y  M  E  G  G  L  E  F  G  M  T  P  G  R  S  P  I  S  G  T  P  Y  H  D  G  M  M  S  P  N  Y  L  L  S  P  N  M  R  M  S  P  I  T  D  A  Q  F  S  P  Y  V  G  G  M  A  F  S  P  T  S  S  P  G  Y  S  P  S  S  P  G  Y  S  P  S  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  T  Y  S  P  S  S  P  G  Y  S  P  T  S  P  A  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  A  Y  S  P  T  S  P  A  Y  S  P  T  S  P  A  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  A  Y  S  P  T  S  P  G  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  N  P  S  A  R  Y  S  P  S  L  A  Y  S  P  T  S  P  K  L  S  P  S  S  P  Y  S  P  S  S  P  S  Y  S :   P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  S  S  P  T  Y  S  P  S  S :   P  Y  N  N  S  G  T  S  P  D  Y  S  P  S  S  P  Q  Y  S :   P  S  A  G  Y  S  P  S  A  P  G  Y  S  P  S  S  T  S  Q  Y  T  P  R  V  S  E  R  D  N  R  S  V  K  D  D  K  A  G  *  S  L  G  R  E  R  S  C  I  Y  L  K  L  *  S  F  S  C  *  T  G  S  L  V  I  T  V  L  S  E  G  I  R  L  L  Y  N  I  F  R  R  T  Q  A  L  F  *  F  L  G  F  S  F  P  V  *  N  T  L  G  L  Y  Y  I  K  M  Q  K  T  W  F  L  L  L  K  *  C  E  N  L  G  V  F  E  *  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27942" stop="27029"/>
                    <exon start="26762" stop="26691"/>
                    <exon start="26508" stop="26452"/>
                    <exon start="26375" stop="26258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGTSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNRSVKDDKAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32005" PGL_stop="28708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32005" e_stop="31785"/>
            <exon e_start="31671" e_stop="31530"/>
            <exon e_start="31448" e_stop="31113"/>
            <exon e_start="31021" e_stop="30735"/>
            <exon e_start="30451" e_stop="30193"/>
            <exon e_start="30108" e_stop="28708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.443" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.463" acc_prob="0.526" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32005" e_stop="31785" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.443" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31784" i_stop="31672" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31671" e_stop="31530" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.884" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31529" i_stop="31449" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31448" e_stop="31113" e_length="336"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31112" i_stop="31022" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="31021" e_stop="30735" e_length="287"/>
          </exon>
          <intron i_serial="4" don_prob="0.463" acc_prob="0.526">
            <gDNA_intron_boundary i_start="30734" i_stop="30452" i_length="283"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="30451" e_stop="30193" e_length="259"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30192" i_stop="30109" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30108" e_stop="28708" e_length="1401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32005" stop="31785"/>
              <exon start="31671" stop="31530"/>
              <exon start="31448" stop="31113"/>
              <exon start="31021" stop="30735"/>
              <exon start="30451" stop="30193"/>
              <exon start="30108" stop="29035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31560" stop="31530"/>
              <exon start="31448" stop="31113"/>
              <exon start="31021" stop="30753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29414" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAG : GTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAG : GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAG : GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATG : GGAGGAGGTTGGGCCTGATGCTGCTCGGAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAAGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAG : GTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAGGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</gDNA_template>
            <first_frame> A  T  Q  R  S  G  R  P  I  K  S  I  C  S  R  L  K  S  K  E  G  R  I  R  G  N  L  M  G  K  R  V  D  F  S  A  R  T  V  I  T  P  D  P  T  I  N  I  D  Q  L  G  V  P  W  S  I  A  L  N  L  T  Y  P  E  T  V  T  P  Y  N  I  E  R :   L  K  E  L  V  E  Y  G  P  H  P  P  P  G  K  T  G  A  K  Y  I  I  R  D  D  G  Q  R  L  D  L  R  Y  L  K  K  S  S  D  Q  H  L  E  L  G  Y  K  :  V  E  R  H  L  N  D  G  D  F  V  L  F  N  R  Q  P  S  L  H  K  M  S  I  M  G  H  R  I  K  I  M  P  Y  S  T  F  R  L  N  L  S  V  T  S  P  Y  N  A  D  F  D  G  D  E  M  N  M  H  V  P  Q  S  F  E  T  R  A  E  V  L  E  L  M  M  V  P  K  C  I  V  S  P  Q  A  N  R  P  V  M  G  I  V  Q  D  T  L  L  G  C  R  K  V  T  K  R  D  T  F  I  E  K  :  D  V  F  M  N  I  L  M  W  W  E  D  F  D  G  K  V  P  A  P  V  I  L  K  P  R  P  L  W  T  G  K  Q  V  F  N  L  I  I  P  K  Q  I  N  L  L  R  Y  S  A  W  H  N  D  S  E  K  G  Y  I  T  P  G  D  T  Q  V  R  I  E  K  G  E  L  L  S  G  T  L  C  K  K  T  L  G  T  S  T  G  S  L  I  H  V  I  W :   E  E  V  G  P  D  A  A  R  K  F  L  G  H  T  Q  W  L  V  N  Y  W  L  L  Q  Q  A  F  S  I  G  I  G  D  T  I  A  D  A  S  T  M  E  K  I  N  E  T  I  S  N  A  K  A  K  V  K  E  L  I  K  A  A  Q  E  K  L  L  E  A  E  P  G  R  T  M  M  E  S  F  E  N  R  V  N  Q  :  V  L  N  K  A  R  D  D  A  G  S  S  A  E  K  S  L  S  E  S  N  N  L  K  A  M  V  T  A  G  S  K  G  S  F  I  N  I  S  Q  M  T  A  C  V  G  Q  Q  N  V  E  G  K  R  I  P  F  G  F  I  D  R  T  L  P  H  F  T  K  D  D  Y  G  P  E  S  R  G  F  V  E  N  S  Y  L  R  G  L  T  P  Q  E  F  F  F  H  A  M  G  G  R  E  G  L  I  D  T  A  V  K  T  S  E  T  G  Y  I  Q  R  R  L  V  K  A  M  E  D  I  M  V  K  Y  D  G  T  V  R  N  S  L  G  D  V  I  Q  F  L  Y  G  E  D  G  M  D  S  V  W  I  E  T  Q  K  L  D  S  L  K  A  K  K  G  T  F  D  D  M  Y  A  Y  E  I  D  D  P  N  W  N  P  S  Y  M  L  P  E  A  V  E  D  L  K  G  I  R  E  I  R  S  V  F  D  A  E  V  Q  K  L  E  A  D  R  H  Q  L  G  T  E  I  A  V  T  G  D  N  S  W  P  L  P  V  N  I  Q  R  L  V  L  N  A  Q  K  T  F  K  I  D  F  R  R  P  S  D  M  H  P  M  E  I  V  E  A  V  D  K  L  Q  E  R  L  K  V  V  P  G  D  D  Y  L  S  M  E  A  Q  K  N  A  T  L  F  F  N  I  L  L  R  S  A  L  A  S  K  R  V  L  K  E  Y  R  L  S  R  E  A  F  E  W  V  V  G  E  I  E  S  R  F  L  Q  S  L  V  A  P  G  E  M  I  G  C  V  A  A  Q  S  I  G  E  P  A  T  Q  M  T  L  N  T  F  H  Y  A  G  V  S  A  K  N  V  T  L  G  V  P  R  L  R  E  I  I  N  V  A  K  K  I  K  T  P  S  L  S  V  Y  L  K  P  E  V  G  K  T  K  E  R  A  K  T  V  Q  C  A  L  E  Y  T  T  L  R  S  V  T  Q  A  T  E  V  W  Y  D  P  D  P  M  S  T  L  I  E  E  D  V  E  F  V  K  S  Y  Y  E  M  P  D  E  E  I  D  P  D  K  I </first_frame>
            <second_frame>  L  H  K  D  Q  V  D  L  L  N  Q  Y  V  V  D  *  N  Q  R  K  V  G  S  E  A  I  *  W  V  K  E  *  T  F  L  L  G  L  *  L  P  P  I  Q  L  L  T  L  I  N  W  E  S  H  G  V  L  L  *  I  S  L  I  Q  K  Q  *  H  H  I  T  L  K   : G  *  R  N  L  L  N  M  D  L  I  H  L  L  V  K  P  G  P  S  I  *  L  G  T  T  A  K  G  L  I  F  D  T  *  R  R  A  A  I  N  T  L  N  *  D  I  R :   L  R  G  T  *  M  M  E  I  L  F  S  S  I  G  N  P  V  Y  I  K  C  L  L  W  D  I  G  L  R  S  C  H  T  Q  L  S  A  *  I  Y  L  S  L  L  L  T  M  L  I  L  M  V  T  K  *  T  C  M  F  H  S  R  L  K  P  E  Q  R  F  W  S  L  *  W  S  L  S  V  L  F  H  P  R  Q  I  G  L  *  W  V  S  S  R  I  P  F  *  V  A  A  K  L  L  K  E  I  P  L  *  K  R :   M  S  L  *  T  S  *  C  G  G  R  I  L  M  G  K  Y  P  L  Q  *  F  L  N  Q  G  H  F  G  L  E  S  K  C  L  T  S  S  Y  Q  N  K  *  I  F  *  D  T  P  H  G  I  M  I  P  K  K  D  T  *  L  L  E  I  L  K  L  E  *  R  K  G  S  C  Y  L  V  L  F  A  K  R  P  L  G  R  P  P  E  V  *  F  M  L  Y   : G  R  R  L  G  L  M  L  L  G  S  F  W  D  I  H  S  G  L  L  I  I  G  F  F  S  K  L  L  A  S  G  *  E  I  Q  L  L  M  L  Q  R  W  R  K  L  M  K  L  S  R  M  Q  K  P  K  S  K  N  L  L  K  L  L  K  R  S  C  *  K  L  N  Q  G  E  L  *  W  N  H  L  R  T  E  *  T  R :   C  *  I  R  L  V  M  M  L  E  A  V  Q  R  R  V  Y  Q  R  A  I  I  L  K  L  W  L  L  L  D  R  R  E  V  L  S  T  Y  L  K  *  L  P  V  W  G  N  R  M  L  K  E  N  V  F  H  L  V  S  *  T  V  L  F  L  I  L  P  K  M  I  M  V  R  K  V  V  V  L  *  R  I  H  I  S  G  D  *  P  R  K  S  S  S  S  M  L  W  V  V  E  K  V  *  L  I  L  L  *  K  L  L  R  P  G  T  F  R  G  G  *  *  R  P  W  R  I  S  W  S  S  M  T  A  L  L  G  I  H  W  G  M  *  S  S  F  C  M  G  K  M  G  W  I  L  F  G  L  R  H  R  S  W  I  L  *  K  Q  R  K  E  H  L  M  T  C  M  H  M  R  S  M  I  L  T  G  T  Q  V  T  C  C  Q  K  L  S  K  I  *  K  V  F  G  R  F  V  V  C  L  M  R  R  S  R  N  L  K  L  I  D  I  S  L  G  Q  R  L  L  *  R  V  T  I  L  G  L  F  L  L  T  F  R  G  L  S  *  M  P  K  R  H  L  K  *  I  S  G  G  P  L  T  C  I  R  W  R  S  W  K  L  L  I  S  Y  R  R  G  L  R  L  F  L  V  M  I  I  *  A  W  R  L  K  R  M  L  L  F  S  S  I  S  C  S  V  V  P  W  L  V  K  G  F  *  R  S  I  G  L  V  E  R  L  L  N  G  *  L  V  R  *  S  L  A  S  C  N  P  L  W  H  Q  E  R  *  L  A  V  L  L  H  S  L  L  V  N  L  P  H  R  *  L  L  I  H  F  I  M  L  V  *  V  P  R  M  L  L  L  V  C  Q  G  *  G  R  S  S  M  L  P  R  K  S  K  H  L  L  F  L  C  T  *  N  L  R  *  A  K  Q  K  R  G  P  K  L  S  S  V  R  *  N  I  P  L  C  G  V  L  L  K  P  Q  K  C  G  M  I  L  I  L  *  A  P  L  L  K  R  M  L  N  L  S  S  H  T  M  K  C  Q  M  K  R  L  T  L  T  K   </second_frame>
            <third_frame>   Y  T  K  I  R  *  T  Y  *  I  N  M  *  *  I  K  I  K  G  R  S  D  Q  R  Q  S  D  G  *  K  S  R  L  F  C  S  D  C  D  Y  P  R  S  N  Y  *  H  *  S  I  G  S  P  M  E  Y  C  S  E  S  H  L  S  R  N  S  D  T  I  *  H  *  K  :  V  K  G  T  C  *  I  W  T  S  S  T  S  W  *  N  R  G  Q  V  Y  N  *  G  R  R  P  K  A  *  S  S  I  L  E  E  E  Q  R  S  T  P  *  T  R  I  *   : G  *  E  A  L  K  *  W  R  F  C  S  L  Q  S  A  T  Q  S  T  *  N  V  Y  Y  G  T  *  D  *  D  H  A  I  L  N  F  P  L  E  F  I  C  H  F  S  L  Q  C  *  F  *  W  *  R  N  E  H  A  C  S  T  V  V  *  N  Q  S  R  G  S  G  A  Y  D  G  P  *  V  Y  C  F  T  P  G  K  *  A  C  N  G  Y  R  P  G  Y  P  F  R  L  P  Q  S  Y  *  K  R  Y  L  Y  R  K   : G  C  L  Y  E  H  L  N  V  V  G  G  F  *  W  E  S  T  R  S  S  D  S  *  T  K  A  T  L  D  W  K  A  S  V  *  P  H  H  T  K  T  N  K  S  F  K  I  L  R  M  A  *  *  F  R  K  R  I  H  N  S  W  R  Y  S  S  *  N  R  E  R  G  V  A  I  W  Y  S  L  Q  K  D  P  W  D  V  H  R  K  S  D  S  C  Y  M  :  G  G  G  W  A  *  C  C  S  E  V  F  G  T  Y  T  V  A  C  *  L  L  A  S  S  A  S  F  *  H  R  D  R  R  Y  N  C  *  C  F  N  D  G  E  N  *  *  N  Y  L  E  C  K  S  Q  S  Q  R  T  Y  *  S  C  S  R  E  A  V  R  S  *  T  R  A  N  Y  D  G  I  I  *  E  Q  S  E  P   : G  V  K  *  G  S  *  *  C  W  K  Q  C  R  E  E  F  I  R  E  Q  *  S  *  S  Y  G  Y  C  W  I  E  G  K  F  Y  Q  H  I  S  N  D  C  L  C  G  A  T  E  C  *  R  K  T  Y  S  I  W  F  H  R  P  Y  S  S  S  F  Y  Q  R  *  L  W  S  G  K  S  W  F  C  R  E  F  I  S  P  G  T  D  P  A  R  V  L  L  P  C  Y  G  W  *  R  R  S  D  *  Y  C  C  E  N  F  *  D  R  V  H  S  E  A  V  S  E  G  H  G  G  Y  H  G  Q  V  *  R  H  C  *  E  F  I  G  G  C  N  P  V  S  V  W  G  R  W  D  G  F  C  L  D  *  D  T  E  A  G  F  S  E  S  K  E  R  N  I  *  *  H  V  C  I  *  D  R  *  S  *  L  E  P  K  L  H  V  A  R  S  C  R  R  F  K  R  Y  S  G  D  S  *  C  V  *  C  G  G  P  E  T  *  S  *  *  T  S  A  W  D  R  D  C  C  N  G  *  Q  F  L  A  S  S  C  *  H  S  E  A  C  L  K  C  P  K  D  I  *  N  R  F  P  E  A  L  *  H  A  S  D  G  D  R  G  S  C  *  *  V  T  G  E  A  *  G  C  S  W  *  *  L  S  K  H  G  G  S  K  E  C  Y  S  F  L  Q  Y  L  A  P  *  C  L  G  *  *  K  G  S  E  G  V  *  A  *  S  R  G  F  *  M  G  S  W  *  D  R  V  S  L  L  A  I  P  C  G  T  R  R  D  D  W  L  C  C  C  T  V  Y  W  *  T  C  H  T  D  D  S  *  Y  I  S  L  C  W  C  E  C  Q  E  C  Y  S  W  C  A  K  V  E  G  D  H  Q  C  C  Q  E  N  Q  N  T  F  S  F  C  V  L  K  T  *  G  R  Q  N  K  R  E  G  Q  N  C  P  V  C  V  R  I  Y  H  F  A  E  C  Y  S  S  H  R  S  V  V  *  S  *  S  Y  E  H  P  Y  *  R  G  C  *  I  C  Q  V  I  L  *  N  A  R  *  R  D  *  P  *  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32005" stop="31785"/>
                    <exon start="31671" stop="31530"/>
                    <exon start="31448" stop="31113"/>
                    <exon start="31021" stop="30735"/>
                    <exon start="30451" stop="30193"/>
                    <exon start="30108" stop="28708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2646</number_coding_nucleotides>
                  <number_encoded_amino_acids>882</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEIDPDKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="34526" PGL_stop="32829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33710" e_stop="33108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="33710" e_stop="33108" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33710" stop="33108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33710" stop="33108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33710" stop="33328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33710" stop="33335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCATTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</gDNA_template>
            <first_frame> S  G  L  P  V  E  V  *  K  Q  V  L  N  K  Y  R  L  N  K  F  *  *  S  S  I  F  L  L  H  Q  H  D  P  F  *  E  I  A  S  I  Y  L  L  V  N  Q  D  L  V  V  Q  *  I  V  F  F  W  K  V  A  N  F  V  M  P  F  H  F  S  S  C  *  K  G  E  M  I  K  H  S  N  C  I  P  M  *  I  D  R  R  F  I  *  K  K  E  H  K  E  L  Y  E  *  S  N  Q  G  K  E  W  Q  H  F  L  Y  E  *  L  L  P  *  K  N  Q  E  N  *  H  R  *  D  W  V  K  E  *  G  K  *  K  A  Q  D  *  K  I  N  V  L  K  L  P  S  L  I  S  I  H  *  T  *  L  K  *  R  V  V  K  L  T  P  F  *  L  F  I  E  R  *  K  L  D  Y  N  S  C  I  E  V  I  L  K  L  D  S  T  *  W  S  C  Y </first_frame>
            <second_frame>  Q  V  C  Q  W  R  S  R  N  R  F  *  T  S  T  G  *  T  S  F  D  R  A  V  F  F  Y  Y  I  N  M  T  L  F  R  R  *  L  L  F  T  Y  *  L  I  R  I  W  *  F  S  E  L  Y  F  F  G  R  L  Q  I  S  S  C  L  F  I  F  P  P  V  R  R  E  K  *  *  N  T  L  I  A  Y  Q  C  E  *  I  E  D  S  F  K  R  R  N  I  K  N  S  M  N  D  Q  I  R  E  K  S  G  N  T  S  Y  M  S  S  F  Y  L  R  R  I  R  K  I  D  I  D  R  I  G  *  R  S  K  V  S  E  K  L  R  I  R  R  *  M  F  *  S  S  R  V  *  Y  L  F  T  R  L  D  *  N  K  E  *  S  N  S  L  H  F  D  C  L  L  N  G  E  N  W  I  I  I  H  V  *  R  *  F  *  N  *  T  A  L  N  G  L  A   </second_frame>
            <third_frame>   R  F  A  S  G  G  L  E  T  G  F  E  Q  V  Q  A  E  Q  V  L  I  E  Q  Y  F  S  I  T  S  T  *  P  F  L  G  D  S  F  Y  L  L  T  S  *  S  G  F  G  S  S  V  N  C  I  F  L  E  G  C  K  F  R  H  A  F  S  F  F  L  L  L  E  G  R  N  D  K  T  L  *  L  H  T  N  V  N  R  *  K  I  H  L  K  E  G  T  *  R  T  L  *  M  I  K  S  G  K  R  V  A  T  L  P  I  *  V  A  F  T  L  E  E  S  G  K  L  T  *  I  G  L  G  K  G  V  R  *  V  K  S  S  G  L  E  D  K  C  S  E  A  P  E  S  N  I  Y  S  L  D  L  I  K  I  K  S  S  Q  T  H  S  I  L  I  V  Y  *  T  V  K  I  G  L  *  F  M  Y  R  G  D  S  K  T  R  Q  H  L  M  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0159F19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34526" e_stop="34246"/>
            <exon e_start="34153" e_stop="33890"/>
            <exon e_start="32947" e_stop="32829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.958" acc_prob="0.988" e_score="0.886"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="34526" e_stop="34246" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34245" i_stop="34154" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.886">
            <gDNA_exon_boundary e_start="34153" e_stop="33890" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33889" i_stop="32948" i_length="942"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="32947" e_stop="32829" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34526" stop="34246"/>
              <exon start="34153" stop="33890"/>
              <exon start="32947" stop="32829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34516" stop="34246"/>
              <exon start="34153" stop="34124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGAGGGGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATT : AGACAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGAGAGGGAAACCAAAGCCTGGAGGGTTGAGCGATCCTCGGCTTGGGACGATTGATCGGAAGATGAAGTGTGAGACGTGTATGGCGAACATGGCTGAATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGGTTTATGAAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG : GACGATCCTAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGGAGGGGATGAAATTGATGTACA</gDNA_template>
            <first_frame> N  *  G  D  E  R  S  E  N  Q  I  C  T  E  Q  V  K  L  T  E  E  W  S  L  K  I  E  T  Y  I  *  I  N  Q  N  P  L  L  S  I  L  F  E  K  K  T  K  *  L  F  Y  C  I  N  F  F  C  R  G  V  T  *  V  A  P  P  W  I  C  A  S  P  S  R  R  R  R  L  P  R  S  G  R  S  S  S  A  L  S  A  P  T  K  L :   D  K  C  L  W  C  T  L  S  M  V  R  L  R  R  E  G  N  Q  S  L  E  G  *  A  I  L  G  L  G  R  L  I  G  R  *  S  V  R  R  V  W  R  T  W  L  N  V  R  G  I  L  V  T  L  S  L  R  N  L  C  F  I  *  G  L  *  N  L  F  L  V  S  F  G  V  S  A  S  I  A  P  K  F  W  R  M  R :   T  I  L  S  S  N  K  P  *  E  S  G  I  L  K  T  G  L  E  R  C  W  M  L  A  R  T  K  Q  N  V  K  E  G  M  K  L  M  Y  </first_frame>
            <second_frame>  T  E  G  T  K  E  A  K  T  R  S  V  L  N  K  *  N  *  L  K  N  G  V  L  K  *  K  L  T  Y  R  L  I  K  T  L  C  Y  L  S  C  S  K  K  K  Q  N  N  Y  S  T  V  *  I  S  S  V  E  V  *  P  R  L  R  H  H  G  F  A  L  P  L  L  A  G  G  G  C  Q  G  P  D  G  P  V  R  H  C  Q  P  R  R  N   : *  T  N  V  C  G  A  H  *  A  W  *  D  Y  G  E  R  E  T  K  A  W  R  V  E  R  S  S  A  W  D  D  *  S  E  D  E  V  *  D  V  Y  G  E  H  G  *  M  S  G  A  F  W  S  P  *  A  C  E  T  Y  V  S  Y  R  V  Y  E  T  C  S  *  Y  P  S  V  C  L  L  Q  L  L  Q  N  S  G  G  *   : G  R  S  *  V  Q  T  S  H  E  N  Q  E  S  *  K  Q  A  *  K  D  V  G  C  L  Q  E  Q  N  K  M  *  R  R  G  *  N  *  C  T </second_frame>
            <third_frame>   L  R  G  R  K  K  R  K  P  D  L  Y  *  T  S  E  I  D  *  R  M  E  S  *  N  R  N  L  H  I  D  *  S  K  P  S  V  I  Y  L  V  R  K  K  N  K  I  I  I  L  L  Y  K  F  L  L  *  R  C  N  L  G  C  A  T  M  D  L  R  F  P  F  S  P  A  E  V  A  K  V  R  T  V  Q  F  G  I  V  S  P  D  E  I  :  R  Q  M  S  V  V  H  I  E  H  G  E  T  T  E  R  G  K  P  K  P  G  G  L  S  D  P  R  L  G  T  I  D  R  K  M  K  C  E  T  C  M  A  N  M  A  E  C  P  G  H  F  G  H  L  E  L  A  K  P  M  F  H  I  G  F  M  K  P  V  L  S  I  L  R  C  V  C  F  N  C  S  K  I  L  A  D  E  :  D  D  P  K  F  K  Q  A  M  R  I  R  N  P  K  N  R  L  R  K  M  L  D  A  C  K  N  K  T  K  C  E  G  G  D  E  I  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34353" stop="34246"/>
                    <exon start="34153" stop="33890"/>
                    <exon start="32947" stop="32831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCNLGCATMDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPKFKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="33902" PGL_stop="34462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33902" e_stop="34462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="33902" e_stop="34462" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="34462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="34460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCC</gDNA_template>
            <first_frame> N  F  G  A  I  E  A  D  T  P  K  D  T  K  N  R  F  H  K  P  Y  M  K  H  R  F  R  K  L  K  V  T  K  M  P  R  T  F  S  H  V  R  H  T  R  L  T  L  H  L  P  I  N  R  P  K  P  R  I  A  Q  P  S  R  L  W  F  P  S  L  R  S  L  T  M  L  N  V  H  H  R  H  L  S  L  Q  L  R  Q  K  T  K  L  Q  K  P  N  Q  F  K  P  *  R  I  R  E  N  E  S  R  L  V  K  I  T  I  S  S  G  L  T  M  P  N  W  T  V  R  T  L  A  T  S  A  G  E  K  G  K  R  K  S  M  V  A  Q  P  R  L  H  L  Y  R  R  N  L  Y  S  R  I  I  I  L  F  F  F  R  T  R  *  I  T  E  G  F  D  *  S  I  C  K  F  L  F  *  D  S </first_frame>
            <second_frame>  I  L  E  Q  L  K  Q  T  H  R  R  I  L  R  T  G  F  I  N  P  I  *  N  I  G  F  A  S  S  R  *  P  K  C  P  G  H  S  A  M  F  A  I  H  V  S  H  F  I  F  R  S  I  V  P  S  R  G  S  L  N  P  P  G  F  G  F  P  L  S  V  V  S  P  C  S  M  C  T  T  D  I  C  L  C  N  Y  V  K  K  P  S  Y  K  N  Q  I  N  L  N  P  R  E  F  E  K  M  N  Q  D  *  *  K  L  Q  F  R  R  G  *  Q  C  R  T  G  P  S  G  P  W  Q  P  P  P  A  R  R  G  S  A  N  P  W  W  R  N  L  G  Y  T  S  T  E  E  I  Y  T  V  E  *  L  F  C  F  F  F  E  Q  D  R  *  Q  R  V  L  I  N  L  Y  V  S  F  Y  F  K  T   </second_frame>
            <third_frame>   F  W  S  N  *  S  R  H  T  E  G  Y  *  E  Q  V  S  *  T  L  Y  E  T  *  V  S  Q  A  Q  G  D  Q  N  A  P  D  I  Q  P  C  S  P  Y  T  S  H  T  S  S  S  D  Q  S  S  Q  A  E  D  R  S  T  L  Q  A  L  V  S  L  S  P  *  S  H  H  A  Q  C  A  P  Q  T  F  V  S  A  I  T  S  K  N  Q  V  T  K  T  K  S  I  *  T  L  E  N  S  R  K  *  I  K  I  S  E  N  Y  N  F  V  G  A  D  N  A  E  L  D  R  P  D  L  G  N  L  R  R  R  E  G  E  A  Q  I  H  G  G  A  T  *  V  T  P  L  Q  K  K  F  I  Q  *  N  N  Y  F  V  F  F  S  N  K  I  D  N  R  G  F  *  L  I  Y  M  *  V  S  I  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33902" stop="34207"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFGAIEADTPKDTKNRFHKPYMKHRFRKLKVTKMPRTFSHVRHTRLTLHLPINRPKPRIAQPSRLWFPSLRSLTMLNVHHRHLSLQLRQKTKLQKPNQFKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33996" stop="34235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKCPGHSAMFAIHVSHFIFRSIVPSRGSLNPPGFGFPLSVVSPCSMCTTDICLCNYVKKPSYKNQINLNPREFEKMNQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34208" stop="34411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRENESRLVKITISSGLTMPNWTVRTLATSAGEKGKRKSMVAQPRLHLYRRNLYSRIIILFFFRTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="39679" PGL_stop="40345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39679" e_stop="40345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39679" e_stop="40345" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39679" stop="40224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39763" stop="40268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39814" stop="40199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39816" stop="40345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</gDNA_template>
            <first_frame> A  F  P  N  S  R  R  T  R  F  *  T  R  F  I  F  P  K  F  F  S  S  *  K  P  L  T  T  I  E  P  L  H  R  Q  R  W  H  Q  S  T  V  V  K  S  A  I  Q  T  S  I  S  I  P  T  I  F  S  H  R  I  F  T  S  K  P  A  I  K  V  L  Y  L  S  P  L  L  I  H  P  N  S  S  S  R  K  K  I  K  L  N  P  F  S  K  P  L  I  I  G  E  F  R  G  K  G  L  R  *  C  V  *  I  V  G  R  L  W  A  M  C  M  M  T  G  H  P  *  L  R  V  R  V  S  F  I  L  V  L  V  R  L  F  L  E  L  Q  G  I  G  *  K  I  K  L  *  R  L  L  L  R  L  D  M  *  F  D  F  *  C  S  F  F  L  D  V  E  V  C  I  W  I  *  E  M  F  D  V  C  V  Y  E  I  L  I  F  T  F  C  W  F  C  E  L  F  H  I  L  C  K  Y  L  Y  W  I  N  K  D  S  P  F  M  </first_frame>
            <second_frame>  P  S  Q  I  H  G  E  R  G  F  E  P  D  S  S  S  P  N  F  S  L  H  K  N  P  L  P  Q  S  N  P  F  T  V  K  D  G  I  N  L  Q  L  *  R  V  Q  Y  K  L  Q  S  P  Y  Q  L  S  F  P  T  G  F  L  L  R  S  R  Q  *  R  Y  S  I  F  L  R  C  *  F  I  Q  I  Q  V  R  E  R  R  *  N  *  T  L  F  R  N  P  *  L  L  G  N  S  E  E  K  D  *  D  D  V  Y  E  L  W  E  G  C  G  L  C  V  *  *  R  A  T  H  D  *  E  S  G  S  V  S  F  W  S  *  S  G  Y  S  *  S  C  K  V  *  D  K  K  *  S  F  E  D  Y  F  *  D  L  T  C  D  L  I  F  D  V  L  F  F  *  M  L  R  F  V  Y  G  F  K  R  C  L  M  F  V  Y  M  R  F  *  F  L  H  F  V  G  F  V  S  C  F  I  F  C  V  N  I  Y  T  G  S  I  K  T  H  L  L  * </second_frame>
            <third_frame>   L  P  K  F  T  E  N  A  V  L  N  P  I  H  L  P  Q  I  F  L  F  I  K  T  P  Y  H  N  R  T  P  S  P  S  K  M  A  S  I  Y  S  C  K  E  C  N  T  N  F  N  L  H  T  N  Y  L  F  P  P  D  F  Y  F  E  A  G  N  K  G  T  L  S  F  S  A  V  D  S  S  K  F  K  F  E  K  E  D  K  I  K  P  F  F  E  T  L  D  Y  W  G  I  Q  R  K  R  T  K  M  M  C  M  N  C  G  K  V  V  G  Y  V  Y  D  D  G  P  P  M  T  E  S  P  G  Q  F  H  F  G  P  S  Q  V  I  P  R  A  A  R  Y  R  I  K  N  K  A  L  K  I  T  S  E  T  *  H  V  I  *  F  L  M  F  F  F  F  R  C  *  G  L  Y  M  D  L  R  D  V  *  C  L  C  I  *  D  F  D  F  Y  I  L  L  V  L  *  A  V  S  Y  F  V  *  I  F  I  L  D  Q  *  R  L  T  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39681" stop="40166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKFTENAVLNPIHLPQIFLFIKTPYHNRTPSPSKMASIYSCKECNTNFNLHTNYLFPPDFYFEAGNKGTLSFSAVDSSKFKFEKEDKIKPFFETLDYWGIQRKRTKMMCMNCGKVVGYVYDDGPPMTESPGQFHFGPSQVIPRAARYRIKNKALKITSET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="41524" PGL_stop="42330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41524" e_stop="42330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41524" e_stop="42330" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41524" stop="42330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCACTGATAATGAGTTCGTCTTC</gDNA_template>
            <first_frame> N  P  A  P  M  Q  *  L  A  N  H  I  G  E  V  T  C  T  R  *  A  W  C  D  E  L  D  P  E  G  K  P  L  A  F  A  G  K  G  F  R  I  *  D  L  Q  H  G  S  P  K  L  K  P  L  G  H  P  E  G  *  L  L  A  L  Q  N  Y  *  S  S  Y  L  Q  F  R  F  N  Y  K  P  T  D  G  G  Q  R  S  V  M  F  L  L  T  I  N  L  *  I  K  F  C  L  V  V  C  S  F  I  S  C  *  G  A  G  S  P  F  H  N  G  E  I  F  Y  I  F  V  L  I  I  N  I  K  L  K  H  V  S  F  G  M  F  D  L  R  K  E  T  F  H  Q  P  I  P  S  T  I  M  D  L  L  R  D  R  I  V  G  S  W  A  G  S  K  I  K  I  L  A  R  L  I  L  V  V  V  T  *  *  S  W  C  R  H  V  L  R  *  S  V  I  M  I  M  A  G  Q  D  S  S  *  S  S  V  S  F  *  F  M  Y  I  F  L  F  E  K  Q  A  L  L  R  F  L  D  Q  R  D  C  A  *  C  P  L  A  T  A  T  F  I  N  F  *  H  Q  Y  H  S  Y  H  S  N  P  T  D  N  E  F  V  F </first_frame>
            <second_frame>  T  P  L  L  C  N  S  S  Q  T  T  *  E  R  *  P  A  Q  G  K  L  G  A  T  S  S  T  Q  K  A  N  P  L  L  S  L  A  R  G  F  E  F  E  T  S  N  M  E  V  P  S  S  N  H  W  A  T  L  K  G  N  C  W  P  C  K  I  I  S  H  L  I  C  N  S  D  L  I  I  S  Q  L  M  E  V  K  D  P  *  C  F  C  L  P  *  I  C  K  L  S  F  A  S  *  S  A  V  S  *  V  V  E  E  L  V  L  P  F  T  M  G  K  S  F  I  Y  L  S  *  L  *  T  S  S  S  N  M  C  H  L  V  C  L  I  *  E  K  K  H  F  I  S  Q  F  P  V  Q  *  W  I  F  S  E  I  E  *  W  G  V  G  Q  E  V  R  *  K  F  *  Q  G  *  S  *  *  L  *  L  N  D  P  G  A  D  M  C  *  D  N  Q  L  S  *  S  W  L  D  K  I  H  L  E  V  L  F  P  F  N  L  C  I  S  F  S  L  R  S  R  L  Y  L  G  F  L  I  K  G  I  V  H  N  V  H  W  P  L  L  H  S  *  I  S  D  I  S  I  I  P  T  I  L  T  P  L  I  M  S  S  S   </second_frame>
            <third_frame>   P  R  S  Y  A  I  A  R  K  P  H  R  R  G  N  L  H  K  V  S  L  V  R  R  A  R  P  R  R  Q  T  P  C  F  R  W  Q  G  V  S  N  L  R  P  P  T  W  K  S  Q  A  Q  T  T  G  P  P  *  R  V  T  V  G  L  A  K  L  L  V  I  L  S  A  I  Q  I  *  L  *  A  N  *  W  R  S  K  I  R  N  V  F  A  Y  H  K  S  V  N  *  V  L  P  R  S  L  Q  F  H  K  L  L  R  S  W  F  S  L  S  Q  W  G  N  L  L  Y  I  C  L  N  Y  K  H  Q  A  Q  T  C  V  I  W  Y  V  *  S  E  K  R  N  I  S  S  A  N  S  Q  Y  N  N  G  S  S  P  R  *  N  S  G  E  L  G  R  K  *  D  K  N  S  S  K  V  D  L  S  S  C  N  L  M  I  L  V  Q  T  C  A  E  I  I  S  Y  H  D  H  G  W  T  R  F  I  L  K  F  C  F  L  L  I  Y  V  Y  L  S  L  *  E  A  G  F  T  *  V  S  *  S  K  G  L  C  I  M  S  I  G  H  C  Y  I  H  K  F  L  T  S  V  S  F  L  P  F  *  P  H  *  *  *  V  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41860" stop="42087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAGSPFHNGEIFYIFVLIINIKLKHVSFGMFDLRKETFHQPIPSTIMDLLRDRIVGSWAGSKIKILARLILVVVT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41570" stop="41791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAQGKLGATSSTQKANPLLSLARGFEFETSNMEVPSSNHWATLKGNCWPCKIISHLICNSDLIISQLMEVKDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="43070" PGL_stop="43631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43070" e_stop="43631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43070" e_stop="43631" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43070" stop="43631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTCTCATTTTTAAAGTTTAGGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAGATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</gDNA_template>
            <first_frame> F  F  L  I  F  K  V  *  A  I  K  S  M  F  S  Q  I  I  Q  F  I  T  Y  Y  C  T  T  S  P  S  Q  N  R  N  R  K  Y  *  V  L  N  F  L  C  I  L  L  I  R  F  L  R  K  S  N  C  S  S  G  S  I  I  V  V  *  R  T  I  *  Y  H  Y  *  Y  N  N  I  L  R  G  R  L  V  E  Y  I  S  I  M  L  N  R  V  Y  S  N  A  C  I  S  Y  V  C  I  N  Y  T  *  I  I  L  M  H  Y  L  V  *  C  I  *  N  S  M  Y  C  I  K  K  L  F  T  N  I  P  F  S  F  I  V  E  I  G  K  H  V  *  K  K  C  F  E  G  Q  L  S  L  L  S  F  *  C  M  Y  *  N  H  C  M  V  N  T  *  I  F  M  V  L  I  M  H  T  L  I  H  N  H  *  </first_frame>
            <second_frame>  S  F  S  F  L  K  F  R  P  S  K  V  C  S  V  K  S  Y  N  L  *  L  T  T  V  Q  L  L  H  L  R  I  E  I  E  S  I  E  C  *  T  F  C  V  S  S  *  *  D  S  L  E  S  Q  I  V  P  V  G  Q  L  L  L  F  E  E  R  S  S  T  T  T  N  T  T  T  Y  L  E  V  V  W  *  S  I  *  V  *  C  *  I  E  C  I  V  M  H  V  L  V  M  F  A  L  I  I  H  K  L  F  *  C  I  I  W  F  D  A  F  K  I  V  C  I  A  L  K  N  Y  L  Q  I  Y  P  S  L  L  L  W  K  L  V  N  M  F  K  K  N  V  L  R  D  N  *  V  F  Y  H  F  N  A  C  I  K  I  I  A  W  L  I  P  K  Y  S  W  Y  *  *  C  T  P  *  Y  T  I  I  S </second_frame>
            <third_frame>   L  S  H  F  *  S  L  G  H  Q  K  Y  V  Q  S  N  H  T  I  Y  N  L  L  L  Y  N  F  S  I  S  E  *  K  *  K  V  L  S  A  K  L  S  V  Y  P  P  N  K  I  P  *  K  V  K  L  F  Q  W  V  N  Y  C  C  L  K  N  D  L  V  P  L  L  I  Q  Q  H  T  *  R  S  F  G  R  V  Y  K  Y  N  A  K  *  S  V  *  *  C  M  Y  *  L  C  L  H  *  L  Y  I  N  Y  F  N  A  L  F  G  L  M  H  L  K  *  Y  V  L  H  *  K  I  I  Y  K  Y  T  L  L  F  Y  C  G  N  W  *  T  C  L  K  K  M  F  *  G  T  I  E  S  F  I  I  L  M  H  V  L  K  S  L  H  G  *  Y  L  N  I  H  G  I  N  N  A  H  L  N  T  Q  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0159F19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="43977" PGL_stop="46690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44742" e_stop="45252"/>
            <exon e_start="46105" e_stop="46235"/>
            <exon e_start="46332" e_stop="46690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44742" e_stop="45252" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46105" e_stop="46235" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46332" e_stop="46690" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44742" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44745" stop="45192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44928" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45001" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45001" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45002" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45010" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45096" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46134" stop="46235"/>
              <exon start="46332" stop="46674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</gDNA_template>
            <first_frame> Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S   </first_frame>
            <second_frame>  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P  </second_frame>
            <third_frame>   S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44965" stop="45252"/>
                    <exon start="46105" stop="46235"/>
                    <exon start="46332" stop="46470"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44718" e_stop="46235"/>
            <exon e_start="46332" e_stop="46681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="44718" e_stop="46235" e_length="1518"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46332" e_stop="46681" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44718" stop="45474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44719" stop="45319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44745" stop="45192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45109" stop="45598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45249" stop="45919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45858" stop="46235"/>
              <exon start="46332" stop="46677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46134" stop="46235"/>
              <exon start="46332" stop="46674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</gDNA_template>
            <first_frame> V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C   </first_frame>
            <second_frame>  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  </second_frame>
            <third_frame>   F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44965" stop="45297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46051" stop="46235"/>
                    <exon start="46332" stop="46470"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44695" e_stop="44808"/>
            <exon e_start="45001" e_stop="45252"/>
            <exon e_start="46105" e_stop="46235"/>
            <exon e_start="46332" e_stop="46690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44695" e_stop="44808" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.942">
            <gDNA_intron_boundary i_start="44809" i_stop="45000" i_length="192"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45001" e_stop="45252" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="45253" i_stop="46104" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46105" e_stop="46235" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46332" e_stop="46690" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44695" stop="44808"/>
              <exon start="45001" stop="45252"/>
              <exon start="46105" stop="46170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45001" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45001" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45002" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45010" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45096" stop="45252"/>
              <exon start="46105" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46134" stop="46235"/>
              <exon start="46332" stop="46674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</gDNA_template>
            <first_frame> S  S  I  K  T  P  S  Q  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P  </first_frame>
            <second_frame>  Q  A  *  R  L  L  H  S  F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H </second_frame>
            <third_frame>   K  H  K  D  S  F  T  V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T   : S  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44740" stop="44808"/>
                    <exon start="45001" stop="45252"/>
                    <exon start="46105" stop="46235"/>
                    <exon start="46332" stop="46470"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYQQFLQHSFLLFADSIVHIKPQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43977" e_stop="44370"/>
            <exon e_start="45001" e_stop="46235"/>
            <exon e_start="46332" e_stop="46681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43977" e_stop="44370" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.942">
            <gDNA_intron_boundary i_start="44371" i_stop="45000" i_length="630"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45001" e_stop="46235" e_length="1235"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46236" i_stop="46331" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46332" e_stop="46681" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43977" stop="44370"/>
              <exon start="45001" stop="45407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45109" stop="45598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45249" stop="45919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45858" stop="46235"/>
              <exon start="46332" stop="46677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="46235"/>
              <exon start="46332" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46134" stop="46235"/>
              <exon start="46332" stop="46674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</gDNA_template>
            <first_frame> A  Y  A  T  L  R  *  N  Q  P  *  V  R  S  L  L  F  L  I  S  L  S  S  S  S  T  Q  S  M  H  Q  C  N  L  N  R  H  D  E  Y  R  N  C  T  R  *  E  F  *  P  *  K  L  R  M  *  L  S  R  I  S  H  S  N  I  T  S  *  I  V  G  L  F  Q  S  N  T  A  *  V  R  M  F  G  V  H  F  Y  D  F  I  S  V  T  A  Q  G  W  F  L  *  F  W  Q  D  V  L  T  T  Y  C  V  R  G  *  G  *  D  K  I  S  T  I  E  *  K  K  I  I  F  S   : A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C   </first_frame>
            <second_frame>  L  T  L  L  C  V  K  I  N  H  E  C  D  L  Y  C  F  *  S  P  F  L  P  H  R  P  N  L  C  T  S  V  I  *  T  V  M  M  N  I  E  I  V  P  D  R  S  F  D  R  K  N  *  E  C  S  Y  Q  E  S  A  I  P  I  L  L  V  E  L  W  D  Y  F  N  L  T  P  R  K  *  E  C  L  V  F  I  S  M  I  S  F  Q  *  L  L  K  V  G  F  C  N  S  G  K  M  C  *  Q  L  T  V  *  E  D  E  D  K  I  R  S  R  Q  L  N  R  R  K  *  S  F  Q  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  </second_frame>
            <third_frame>   L  R  Y  S  A  L  K  S  T  M  S  A  I  F  I  V  F  N  L  P  F  F  L  I  D  P  I  Y  A  P  V  *  S  E  P  S  *  *  I  *  K  L  Y  Q  I  G  V  L  T  V  K  I  E  N  V  V  I  K  N  Q  P  F  Q  Y  Y  *  L  N  C  G  I  I  S  I  *  H  R  V  S  K  N  V  W  C  S  F  L  *  F  H  F  S  D  C  S  R  L  V  F  V  I  L  A  R  C  A  D  N  L  L  C  E  R  M  R  I  R  *  D  L  D  N  *  I  E  E  N  N  L  F  S :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46051" stop="46235"/>
                    <exon start="46332" stop="46470"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44362" stop="44370"/>
                    <exon start="45001" stop="45297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="48556" PGL_stop="52310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48556" e_stop="48870"/>
            <exon e_start="48962" e_stop="49049"/>
            <exon e_start="49476" e_stop="49573"/>
            <exon e_start="49701" e_stop="49798"/>
            <exon e_start="50910" e_stop="51039"/>
            <exon e_start="51121" e_stop="51308"/>
            <exon e_start="51489" e_stop="51575"/>
            <exon e_start="52108" e_stop="52310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48556" e_stop="48870" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48962" e_stop="49049" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49476" e_stop="49573" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49701" e_stop="49798" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49799" i_stop="50909" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50910" e_stop="51039" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="51121" e_stop="51308" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="51309" i_stop="51488" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="51489" e_stop="51575" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51576" i_stop="52107" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="52108" e_stop="52310" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48556" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48588" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50910" stop="50979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48592" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50910" stop="51039"/>
              <exon start="51121" stop="51204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48600" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50910" stop="51039"/>
              <exon start="51121" stop="51221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48609" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50910" stop="51039"/>
              <exon start="51121" stop="51301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48648" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50910" stop="51039"/>
              <exon start="51121" stop="51308"/>
              <exon start="51489" stop="51575"/>
              <exon start="52108" stop="52310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51209" stop="51308"/>
              <exon start="51489" stop="51575"/>
              <exon start="52108" stop="52291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCG</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K  M  *  E  A  S  F  </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *  R  C  E  K  L  H  S </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  D  V  R  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48677" stop="48870"/>
                    <exon start="48962" stop="49049"/>
                    <exon start="49476" stop="49573"/>
                    <exon start="49701" stop="49798"/>
                    <exon start="50910" stop="51039"/>
                    <exon start="51121" stop="51308"/>
                    <exon start="51489" stop="51562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48556" e_stop="48870"/>
            <exon e_start="48962" e_stop="49049"/>
            <exon e_start="49476" e_stop="49573"/>
            <exon e_start="49701" e_stop="49798"/>
            <exon e_start="50937" e_stop="51039"/>
            <exon e_start="51121" e_stop="51308"/>
            <exon e_start="51489" e_stop="51575"/>
            <exon e_start="52108" e_stop="52291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="0.835"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48556" e_stop="48870" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="48871" i_stop="48961" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48962" e_stop="49049" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49050" i_stop="49475" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49476" e_stop="49573" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="49574" i_stop="49700" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49701" e_stop="49798" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49799" i_stop="50936" i_length="1138"/>
          </intron>
          <exon e_serial="5" e_score="0.835">
            <gDNA_exon_boundary e_start="50937" e_stop="51039" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51040" i_stop="51120" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="51121" e_stop="51308" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="51309" i_stop="51488" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="51489" e_stop="51575" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51576" i_stop="52107" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="52108" e_stop="52291" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48556" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48648" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48682" stop="48870"/>
              <exon start="48962" stop="49049"/>
              <exon start="49476" stop="49573"/>
              <exon start="49701" stop="49798"/>
              <exon start="50937" stop="51039"/>
              <exon start="51121" stop="51308"/>
              <exon start="51489" stop="51499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51209" stop="51308"/>
              <exon start="51489" stop="51575"/>
              <exon start="52108" stop="52291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : ACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : D  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *   </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48677" stop="48870"/>
                    <exon start="48962" stop="49049"/>
                    <exon start="49476" stop="49573"/>
                    <exon start="49701" stop="49798"/>
                    <exon start="50937" stop="51039"/>
                    <exon start="51121" stop="51308"/>
                    <exon start="51489" stop="51562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVDYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="60230" PGL_stop="61922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60230" e_stop="60551"/>
            <exon e_start="60923" e_stop="61101"/>
            <exon e_start="61244" e_stop="61327"/>
            <exon e_start="61407" e_stop="61574"/>
            <exon e_start="61672" e_stop="61922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60230" e_stop="60551" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60552" i_stop="60922" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60923" e_stop="61101" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61102" i_stop="61243" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61244" e_stop="61327" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61328" i_stop="61406" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61407" e_stop="61574" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61575" i_stop="61671" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61672" e_stop="61922" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60243" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60522" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61574"/>
              <exon start="61672" stop="61922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60522" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60523" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61574"/>
              <exon start="61672" stop="61913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60523" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61574"/>
              <exon start="61672" stop="61819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60532" stop="60551"/>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60923" stop="61101"/>
              <exon start="61244" stop="61327"/>
              <exon start="61407" stop="61574"/>
              <exon start="61672" stop="61922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG : GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</gDNA_template>
            <first_frame> T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  :  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R   </first_frame>
            <second_frame>  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R :   T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  </second_frame>
            <third_frame>   T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T   : G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60335" stop="60551"/>
                    <exon start="60923" stop="61101"/>
                    <exon start="61244" stop="61327"/>
                    <exon start="61407" stop="61574"/>
                    <exon start="61672" stop="61794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQDFQRGETARCLPQCHHMFHLPCIDTWLLRHGSCPLCRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="63916" PGL_stop="65452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63916" e_stop="65452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="63916" e_stop="65452" e_length="1537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63916" stop="64756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63921" stop="64569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63929" stop="64459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64152" stop="64892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64716" stop="65452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</gDNA_template>
            <first_frame> L  P  S  R  H  S  P  S  P  F  L  N  S  F  L  H  A  P  P  L  P  T  T  K  T  A  V  C  F  L  K  Y  T  R  W  L  N  F  S  A  *  Y  H  R  S  H  C  H  R  R  R  F  S  W  P  S  S  C  H  S  A  S  S  *  Q  H  P  L  S  P  S  R  S  F  *  C  R  W  W  S  R  S  V  R  C  S  *  R  I  Y  P  *  S  W  F  P  D  F  H  Y  W  L  S  *  S  P  K  S  P  *  L  *  L  F  R  P  Q  K  I  L  F  G  G  S  G  L  L  W  W  S  F  P  H  R  C  *  S  S  P  A  F  R  R  C  T  A  I  F  N  *  P  N  W  F  S  C  G  *  I  T  Y  R  I  D  *  I  E  S  F  D  A  R  *  *  *  N  I  E  C  *  *  R  T  Y  D  E  F  I  K  E  D  R  F  F  *  C  N  I  G  K  V  L  S  T  V  F  W  W  N  F  L  R  *  R  A  *  N  N  V  A  A  V  Q  F  H  L  Q  M  P  S  S  W  *  Q  H  T  S  G  E  G  H  C  G  H  S  G  T  V  G  G  K  T  A  V  E  F  N  I  V  Q  Y  T  C  C  F  R  *  F  R  I  G  F  Q  H  K  N  K  S  D  T  T  K  W  G  N  V  G  K  *  I  W  G  N  I  G  S  *  R  A  *  S  C  Q  V  V  G  G  R  K  N  R  *  G  S  A  T  G  S  E  H  S  M  F  V  F  F  S  *  P  R  Q  S  S  G  A  G  S  G  S  S  S  *  R  I  G  *  R  Y  R  *  *  H  V  L  R  D  Q  C  G  S  L  L  C  S  G  R  E  G  T  G  F  C  H  A  C  G  A  L  W  *  C  G  R  *  G  F  G  G  S  G  R  E  G  A  I  G  L  V  W  G  V  G  S  W  V  M  G  L  L  E  D  V  Q  D  R  V  C  P  T  E  P  M  P  T  H  *  L  E  E  E  P  E  S  E  T  G  L  V  H  L  W  R  L  C  D  *  R  Y  F  *  W  S  F  S  F  W  E  K  S  S  R  N  F  V  T  R  *  S  S  G  Y  C  I  A  *  F  W  F  E  F  F  F  H  L  C  K  S  R  S  F  E  C  C  *  F  I  C  I  W  N  H  K  R  F  E  I  I  Y  M  Q  *  L  </first_frame>
            <second_frame>  C  L  P  A  T  L  P  H  P  S  S  T  L  F  S  T  R  R  R  F  P  L  L  K  P  P  Y  A  S  S  N  I  P  V  G  S  T  S  Q  P  N  T  T  G  V  I  V  I  G  G  G  L  A  G  L  A  A  A  I  R  L  Q  A  D  N  I  P  F  L  L  L  E  A  S  D  A  V  G  G  R  V  R  S  D  V  V  D  G  Y  T  L  D  R  G  F  Q  I  F  I  T  G  Y  P  E  A  R  K  V  L  D  Y  D  S  L  D  L  R  K  F  Y  S  G  A  Q  V  Y  Y  G  G  R  F  H  T  V  A  D  P  L  R  H  F  A  D  A  L  Q  S  L  T  N  P  I  G  S  V  V  D  K  L  L  I  G  L  T  R  L  K  V  L  T  Q  G  D  D  E  I  L  S  A  D  E  E  P  T  M  N  L  L  K  K  I  G  F  S  D  A  I  L  E  R  F  F  R  P  F  F  G  G  I  F  F  D  R  E  L  E  T  T  S  R  L  F  N  F  I  F  K  C  L  A  L  G  D  N  T  L  P  A  K  G  I  A  A  I  P  E  Q  L  A  A  K  L  P  S  N  S  I  L  F  N  T  R  V  V  S  V  D  S  G  S  D  S  S  T  K  I  R  V  T  L  Q  N  G  E  M  L  E  S  E  F  G  V  I  L  A  V  E  E  P  E  A  V  K  L  L  A  G  E  K  T  G  E  V  R  Q  P  V  R  S  T  V  C  L  Y  F  S  A  D  Q  G  K  V  P  V  Q  D  P  V  L  L  L  N  G  S  G  K  G  I  V  N  N  M  F  F  A  T  N  V  A  P  S  Y  A  P  A  G  K  A  L  V  S  V  T  L  V  G  L  Y  G  D  V  A  D  E  D  L  V  D  R  V  V  K  E  L  S  G  W  F  G  E  S  V  V  G  S  W  G  Y  L  R  M  Y  R  I  G  F  A  Q  P  N  Q  C  P  P  T  N  L  K  K  N  P  K  V  K  P  G  L  Y  I  C  G  D  Y  V  T  S  A  T  F  D  G  A  L  V  S  G  K  K  A  A  E  T  L  L  Q  D  K  A  L  V  I  V  *  L  N  F  G  L  S  F  F  S  T  C  V  K  V  E  V  L  N  V  V  D  L  F  V  Y  G  I  I  N  V  S  R  S  F  T  C  N  N  C </second_frame>
            <third_frame>   A  F  P  P  L  S  L  T  L  P  Q  L  F  S  P  R  A  A  A  S  H  Y  *  N  R  R  M  L  P  Q  I  Y  P  L  A  Q  L  L  S  L  I  P  P  E  S  L  S  S  A  A  V  *  L  A  *  Q  L  P  F  G  F  K  L  T  T  S  P  F  S  F  S  K  L  L  M  P  L  V  V  A  F  G  P  M  *  L  T  D  I  P  L  I  V  V  S  R  F  S  L  L  V  I  L  K  P  E  K  S  L  I  M  T  L  *  T  S  E  N  S  I  R  G  L  R  F  T  M  V  V  V  S  T  P  L  L  I  L  S  G  I  S  Q  M  H  C  N  L  *  L  T  Q  L  V  Q  L  W  I  N  Y  L  *  D  *  L  D  *  K  F  *  R  K  V  M  M  K  Y  *  V  L  M  K  N  L  R  *  I  Y  *  R  R  S  V  F  L  M  Q  Y  W  K  G  S  F  D  R  F  L  V  E  F  S  S  I  E  S  L  K  Q  R  R  G  C  S  I  S  S  S  N  A  *  L  L  V  T  T  H  F  R  R  R  A  L  R  P  F  R  N  S  W  R  Q  N  C  R  R  I  Q  Y  C  S  I  H  V  L  F  P  L  I  Q  D  R  I  P  A  Q  K  *  E  *  H  Y  K  M  G  K  C  W  K  V  N  L  G  *  Y  W  Q  L  K  S  L  K  L  S  S  C  W  R  E  K  K  P  V  R  F  G  N  R  F  G  A  Q  Y  V  C  I  F  Q  L  T  K  A  K  F  R  C  R  I  R  F  F  F  L  T  D  R  V  K  V  S  L  I  T  C  S  S  R  P  M  W  L  P  L  M  L  R  Q  G  R  H  W  F  L  S  R  L  W  G  F  M  V  M  W  Q  M  R  I  W  W  I  G  S  *  R  S  Y  R  V  G  L  G  S  R  *  L  G  H  G  V  T  *  G  C  T  G  S  G  L  P  N  R  T  N  A  H  P  L  T  *  R  R  T  R  K  *  N  R  A  C  T  F  V  E  I  M  *  L  A  L  L  L  M  E  L  *  F  L  G  K  K  Q  Q  K  L  C  Y  K  I  K  L  W  L  L  Y  S  L  I  L  V  *  V  F  F  P  L  V  *  K  *  K  F  *  M  L  L  I  Y  L  Y  M  E  S  *  T  F  R  D  H  L  H  A  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63917" stop="65335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLPATLPHPSSTLFSTRRRFPLLKPPYASSNIPVGSTSQPNTTGVIVIGGGLAGLAAAIRLQADNIPFLLLEASDAVGGRVRSDVVDGYTLDRGFQIFITGYPEARKVLDYDSLDLRKFYSGAQVYYGGRFHTVADPLRHFADALQSLTNPIGSVVDKLLIGLTRLKVLTQGDDEILSADEEPTMNLLKKIGFSDAILERFFRPFFGGIFFDRELETTSRLFNFIFKCLALGDNTLPAKGIAAIPEQLAAKLPSNSILFNTRVVSVDSGSDSSTKIRVTLQNGEMLESEFGVILAVEEPEAVKLLAGEKTGEVRQPVRSTVCLYFSADQGKVPVQDPVLLLNGSGKGIVNNMFFATNVAPSYAPAGKALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKALVIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="72444" PGL_stop="68868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72444" e_stop="72119"/>
            <exon e_start="71737" e_stop="71323"/>
            <exon e_start="71152" e_stop="70785"/>
            <exon e_start="70336" e_stop="70100"/>
            <exon e_start="69360" e_stop="68868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.598" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72444" e_stop="72119" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.598" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72118" i_stop="71738" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71737" e_stop="71323" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71152" e_stop="70785" e_length="368"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70336" e_stop="70100" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69360" e_stop="68868" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72444" stop="72119"/>
              <exon start="71737" stop="71370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72444" stop="72119"/>
              <exon start="71737" stop="71487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72444" stop="72119"/>
              <exon start="71737" stop="71682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72430" stop="72119"/>
              <exon start="71737" stop="71488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72355" stop="72119"/>
              <exon start="71737" stop="71323"/>
              <exon start="71152" stop="71094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71732" stop="71323"/>
              <exon start="71152" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71623" stop="71323"/>
              <exon start="71152" stop="70941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70877" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70872" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70283" stop="70100"/>
              <exon start="69360" stop="68871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70217" stop="70100"/>
              <exon start="69360" stop="68919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70136" stop="70100"/>
              <exon start="69360" stop="68868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70135" stop="70100"/>
              <exon start="69360" stop="68871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT : AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</gDNA_template>
            <first_frame> K  R  K  K  K  I  K  K  A  A  F  F  S  S  F  I  F  F  F  I  F  L  S  I  L  I  S  H  I  Q  L  K  N  R  Y  I  E  R  K  R  K  T  K  N  *  K  R  N  Q  Q  N  R  K  K  T  *  S  F  L  C  I  S  Y  S  L  T  V  Y  S  H  K  L  W  L  I  F  N  G  S  V  D  L  T  F  I  G  Y  V  *  L  Y  F  H  T  V  *  F  S  N  I  I  P  Y  K  A  *  S  Q  L :   T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S </first_frame>
            <second_frame>  R  G  K  K  K  L  K  K  L  P  F  F  L  L  L  S  S  S  S  S  S  F  P  F  S  S  P  T  F  N  *  K  T  D  I  *  R  E  K  G  K  Q  K  T  E  K  E  T  N  K  T  G  K  R  L  N  L  F  S  V  F  H  I  L  *  P  Y  I  L  I  N  S  G  *  S  L  M  D  L  *  I  *  R  L  L  A  T  F  N  C  I  F  T  L  C  D  S  V  I  L  Y  H  I  R  P  N  H  N   : *  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L   </second_frame>
            <third_frame>   E  E  K  K  N  *  K  S  C  L  F  F  F  F  Y  L  L  L  H  L  P  F  H  S  H  L  P  H  S  T  E  K  Q  I  Y  R  E  K  K  E  N  K  K  L  K  K  K  P  T  K  Q  E  K  D  L  I  F  S  L  Y  F  I  F  F  N  R  I  F  S  *  T  L  V  D  L  *  W  I  C  R  S  N  V  Y  W  L  R  L  I  V  F  S  H  C  V  I  Q  *  Y  Y  T  I  *  G  L  I  T  T  :  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71644" stop="71323"/>
                    <exon start="71152" stop="70785"/>
                    <exon start="70336" stop="70100"/>
                    <exon start="69360" stop="69112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71740" e_stop="71323"/>
            <exon e_start="71152" e_stop="70785"/>
            <exon e_start="70336" e_stop="70100"/>
            <exon e_start="69360" e_stop="68868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71740" e_stop="71323" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71322" i_stop="71153" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71152" e_stop="70785" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="70784" i_stop="70337" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70336" e_stop="70100" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70099" i_stop="69361" i_length="739"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69360" e_stop="68868" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71740" stop="71323"/>
              <exon start="71152" stop="70785"/>
              <exon start="70336" stop="70313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71732" stop="71323"/>
              <exon start="71152" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71623" stop="71323"/>
              <exon start="71152" stop="70941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70877" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70872" stop="70785"/>
              <exon start="70336" stop="70100"/>
              <exon start="69360" stop="68870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70283" stop="70100"/>
              <exon start="69360" stop="68871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70217" stop="70100"/>
              <exon start="69360" stop="68919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70136" stop="70100"/>
              <exon start="69360" stop="68868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70135" stop="70100"/>
              <exon start="69360" stop="68871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</gDNA_template>
            <first_frame> Q  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  </first_frame>
            <second_frame>  R  T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S </second_frame>
            <third_frame>   E  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71644" stop="71323"/>
                    <exon start="71152" stop="70785"/>
                    <exon start="70336" stop="70100"/>
                    <exon start="69360" stop="69112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="70021" e_stop="68969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="70021" e_stop="68969" e_length="1053"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70018" stop="69399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69648" stop="68969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATG</gDNA_template>
            <first_frame> K  L  V  *  F  S  L  G  S  P  V  Y  I  L  S  T  L  Q  T  H  V  A  W  *  F  F  S  L  L  I  T  A  L  L  H  *  K  L  *  L  *  F  T  P  P  F  W  L  Y  T  V  T  L  H  L  K  K  I  T  S  F  N  I  M  C  R  F  R  E  Q  I  I  S  V  I  T  S  C  S  H  *  L  Y  C  S  *  K  A  Q  C  G  R  N  V  P  C  L  *  H  T  R  N  K  L  N  S  Y  S  *  I  L  I  Y  S  Q  *  K  A  K  L  C  V  P  R  A  H  P  F  D  E  N  I  S  L  L  N  K  S  Y  Q  I  S  E  R  Q  L  L  C  E  V  *  K  M  E  I  R  N  F  K  V  H  S  S  D  A  *  M  E  V  H  R  A  Y  T  S  L  S  N  S  L  S  C  M  L  F  R  V  L  P  S  *  I  R  V  E  V  H  L  N  V  D  G  F  Q  C  *  A  Y  *  E  S  N  Y  I  F  Y  I  H  S  S  G  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M </first_frame>
            <second_frame>  S  W  S  D  F  P  *  A  V  L  F  I  F  *  A  H  Y  K  L  T  *  P  G  S  S  F  L  C  *  S  P  H  Y  C  T  E  S  F  N  Y  N  L  L  P  P  F  G  Y  T  Q  L  H  C  I  L  K  K  L  H  H  L  T  S  C  A  D  L  E  S  R  L  F  R  *  L  H  L  V  V  T  N  Y  I  A  R  K  K  H  N  A  V  E  M  F  H  V  F  D  I  P  E  T  N  *  T  P  I  L  R  Y  S  S  I  V  N  K  R  Q  N  Y  V  Y  H  E  H  T  H  L  T  K  T  L  V  Y  L  T  K  A  I  R  L  A  N  D  N  Y  F  V  K  Y  E  K  W  K  *  E  T  S  K  F  I  L  R  M  L  E  W  K  Y  T  G  L  I  L  P  C  Q  I  P  F  R  V  C  C  S  V  C  C  H  H  E  *  G  L  R  F  I  *  M  L  M  D  F  N  V  E  L  I  R  K  V  T  T  F  S  I  F  I  L  Q  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *   </second_frame>
            <third_frame>   V  G  L  I  F  L  R  Q  S  C  L  Y  F  K  H  I  T  N  S  R  S  L  V  V  L  F  F  A  N  H  R  I  I  A  L  K  A  L  I  I  I  Y  S  P  L  L  V  I  H  S  Y  I  A  S  *  K  N  Y  I  I  *  H  H  V  Q  I  *  R  A  D  Y  F  G  N  Y  I  L  *  S  L  I  I  L  L  V  K  S  T  M  R  *  K  C  S  M  S  L  T  Y  Q  K  Q  I  E  L  L  F  L  D  T  H  L  *  S  I  K  G  K  I  M  C  T  T  S  T  P  I  *  R  K  H  *  F  T  *  Q  K  L  S  D  *  R  T  T  I  T  L  *  S  M  K  N  G  N  K  K  L  Q  S  S  F  F  G  C  L  N  G  S  T  Q  G  L  Y  F  P  V  K  F  P  F  V  Y  V  V  P  C  V  A  I  M  N  K  G  *  G  S  S  E  C  *  W  I  S  M  L  S  L  L  G  K  *  L  H  F  L  Y  S  F  F  R  E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69426" stop="69112"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLMDFNVELIRKVTTFSIFILQGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="82024" PGL_stop="82940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82024" e_stop="82940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="82024" e_stop="82940" e_length="917"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82024" stop="82940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</gDNA_template>
            <first_frame> Y  P  L  E  N  Q  D  I  D  S  L  E  R  P  L  I  H  E  R  S  S  T  V  I  A  D  N  N  G  F  L  H  D  A  S  P  N  E  I  D  F  P  G  Q  D  L  S  E  Y  P  P  V  S  R  T  S  P  V  P  K  P  K  F  D  F  A  Q  Y  Y  A  F  N  L  T  I  F  A  L  T  L  I  Y  C  S  F  A  P  L  V  V  P  V  G  A  V  Y  F  G  Y  R  Y  L  V  D  K  Y  N  F  L  F  V  Y  R  V  R  G  F  P  A  G  N  D  G  R  L  M  D  T  V  L  S  I  M  R  F  C  V  D  L  F  L  L  S  M  L  L  F  F  S  V  R  G  D  S  T  K  L  Q  A  I  F  T  L  G  L  L  V  V  Y  K  L  L  P  S  D  K  D  S  F  Q  P  A  L  L  Q  G  I  Q  T  I  D  N  I  V  E  G  P  T  D  Y  E  V  F  S  Q  P  T  F  D  W  D  T  Y  N  S  *  L  V  N  K  T  K  D  L  C  *  H  F  V  Y  I  L  I  L  L  R  K  C  S  C  I  Y  Q  I  S  L  L  F  S  W  F  I  L  L  V  V  G  N  R  Y  L  A  *  D  H  K  S  T  C  Y  N  V  *  R  V  P  L  *  *  H  S  L  Y  F  Y  D  Q  V  L  T  N  L  Q  S  E  *  M  L  F  V  Y  L  N  I  C   </first_frame>
            <second_frame>  T  H  W  K  I  K  T  L  I  V  W  R  G  L  *  F  M  K  G  V  Q  L  *  L  L  T  T  M  D  F  Y  T  M  P  L  Q  M  K  L  I  S  L  D  K  I  C  L  N  T  L  Q  S  A  E  P  H  Q  F  Q  S  R  S  L  I  L  H  S  I  M  L  S  I  *  Q  Y  L  P  *  P  *  S  I  V  R  L  L  L  W  W  F  L  L  V  Q  F  T  L  G  T  G  I  *  L  T  S  T  T  S  C  L  Y  T  E  C  E  V  S  L  L  V  M  M  G  G  *  W  I  L  Y  Y  L  S  *  G  F  V  L  T  C  S  S  F  Q  C  Y  F  S  F  L  Y  E  E  T  Q  L  S  F  K  P  Y  S  H  L  D  C  *  W  C  I  N  S  C  P  L  I  R  I  L  F  S  Q  R  Y  Y  K  A  Y  R  L  L  T  T  L  S  K  G  Q  L  I  M  R  F  S  H  N  L  H  L  I  G  I  R  I  I  H  D  L  *  I  K  P  K  I  C  V  D  I  L  Y  I  F  L  F  C  Y  G  S  V  P  A  S  I  R  S  L  S  S  F  L  G  S  S  F  W  W  L  E  T  D  I  W  L  R  T  T  R  A  H  V  I  M  S  N  G  F  H  C  S  S  T  V  C  I  S  T  I  R  S  *  P  I  Y  R  V  N  R  C  C  L  F  T  S  T  S  A  </second_frame>
            <third_frame>   P  I  G  K  S  R  H  *  *  F  G  E  A  S  D  S  *  K  E  F  N  C  D  C  *  Q  Q  W  I  F  T  R  C  L  S  K  *  N  *  F  P  W  T  R  F  V  *  I  P  S  S  Q  P  N  L  T  S  S  K  A  E  V  *  F  C  T  V  L  C  F  Q  S  D  N  I  C  P  N  P  D  L  L  F  V  C  S  S  G  G  S  C  W  C  S  L  L  W  V  P  V  F  S  *  Q  V  Q  L  P  V  C  I  Q  S  A  R  F  P  C  W  *  *  W  E  V  D  G  Y  C  I  I  Y  H  E  V  L  C  *  L  V  P  P  F  N  A  T  F  L  F  C  T  R  R  L  N  *  A  S  S  H  I  H  T  W  I  V  S  G  V  *  T  L  A  L  *  *  G  F  F  S  A  S  V  I  T  R  H  T  D  Y  *  Q  H  C  R  R  A  N  *  L  *  G  F  L  T  T  Y  I  *  L  G  Y  V  *  F  M  T  C  E  *  N  Q  R  F  V  L  T  F  C  I  Y  S  Y  F  V  T  E  V  F  L  H  L  S  D  L  S  P  L  F  L  V  H  P  F  G  G  W  K  Q  I  F  G  L  G  P  Q  E  H  M  L  *  C  L  T  G  S  T  V  V  A  Q  S  V  F  L  R  S  G  L  D  Q  S  T  E  *  I  D  V  V  C  L  P  Q  H  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82024" stop="82671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPLENQDIDSLERPLIHERSSTVIADNNGFLHDASPNEIDFPGQDLSEYPPVSRTSPVPKPKFDFAQYYAFNLTIFALTLIYCSFAPLVVPVGAVYFGYRYLVDKYNFLFVYRVRGFPAGNDGRLMDTVLSIMRFCVDLFLLSMLLFFSVRGDSTKLQAIFTLGLLVVYKLLPSDKDSFQPALLQGIQTIDNIVEGPTDYEVFSQPTFDWDTYNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82679" stop="82891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKPKICVDILYIFLFCYGSVPASIRSLSSFLGSSFWWLETDIWLRTTRAHVIMSNGFHCSSTVCISTIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="88650" PGL_stop="91557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88650" e_stop="88695"/>
            <exon e_start="88779" e_stop="88852"/>
            <exon e_start="88944" e_stop="89043"/>
            <exon e_start="89137" e_stop="89194"/>
            <exon e_start="90325" e_stop="90396"/>
            <exon e_start="90491" e_stop="90748"/>
            <exon e_start="91447" e_stop="91557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.649" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88650" e_stop="88695" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.982">
            <gDNA_intron_boundary i_start="88696" i_stop="88778" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88779" e_stop="88852" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.717">
            <gDNA_intron_boundary i_start="88853" i_stop="88943" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88944" e_stop="89043" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="89044" i_stop="89136" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89137" e_stop="89194" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.972">
            <gDNA_intron_boundary i_start="89195" i_stop="90324" i_length="1130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90325" e_stop="90396" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.649" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90397" i_stop="90490" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90491" e_stop="90748" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="90749" i_stop="91446" i_length="698"/>
          </intron>
          <exon e_serial="7" e_score="0.936">
            <gDNA_exon_boundary e_start="91447" e_stop="91557" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88650" stop="88695"/>
              <exon start="88779" stop="88852"/>
              <exon start="88944" stop="89043"/>
              <exon start="89137" stop="89194"/>
              <exon start="90325" stop="90396"/>
              <exon start="90491" stop="90748"/>
              <exon start="91447" stop="91557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88650" stop="88695"/>
              <exon start="88779" stop="88852"/>
              <exon start="88944" stop="89043"/>
              <exon start="89137" stop="89194"/>
              <exon start="90325" stop="90396"/>
              <exon start="90491" stop="90748"/>
              <exon start="91447" stop="91540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTACCTATCTTGCGGACCTATCCTATACAAAGCTTTCAGAAAGT : TTCCATTCTCAAGTACGAGACAAGCGGCGTCCACCTGATCCGAGGATCCCCTTTGAATATTGTTATGATATGAG : TCCTGATGAAAATACTAGCTTGATTCCTAGTTTAAGCCTAACTATGAGTGGGGGAGGCCAACTTGCTGTCAATGATCCAATTATTGTCATATCCACACAG : AATCAACTAATGTATTGCCTGGCCATTGTGAAGAGTGATGCTCTAAATATAATTGGAC : AGAACTTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAAATCATCCTCGGTTGGAAGAAATTTGATT : GTTATGATATTGAGAAAATAGACCATTTCCCATCACAACCTGTTAATACCACCCATGTTCCACCTGCCTTTGCTGTTGTGCCTGGAAATGATAATGCAGAGAAATCACATGAAAGGACGACAACTACTCGTCAAAGTTCTTTTGCATCATCTGTTTATCAAACATGTTATTTGAACCTCATAAACTGCTTCCTAGCATCTGTGATATTGCTACTTTTATAATTGCTACCATAAGCTCATTCTCACACTGAGGATTCAG : GTTGTTTTTGATGGACCCTCCAAACAAAATCACTATTTTGTGACGTAGCATAACATTTGAGAATAATAGGATGTTGCATTTTCTGTTAATACTACCTCCGTTTCGTTTTAA</gDNA_template>
            <first_frame> L  Y  L  S  C  G  P  I  L  Y  K  A  F  R  K   : F  P  F  S  S  T  R  Q  A  A  S  T  *  S  E  D  P  L  *  I  L  L  *  Y  E  :  S  *  *  K  Y  *  L  D  S  *  F  K  P  N  Y  E  W  G  R  P  T  C  C  Q  *  S  N  Y  C  H  I  H  T   : E  S  T  N  V  L  P  G  H  C  E  E  *  C  S  K  Y  N  W  T :   E  L  H  D  W  I  P  L  C  V  *  S  R  K  N  H  P  R  L  E  E  I  *  L :   L  *  Y  *  E  N  R  P  F  P  I  T  T  C  *  Y  H  P  C  S  T  C  L  C  C  C  A  W  K  *  *  C  R  E  I  T  *  K  D  D  N  Y  S  S  K  F  F  C  I  I  C  L  S  N  M  L  F  E  P  H  K  L  L  P  S  I  C  D  I  A  T  F  I  I  A  T  I  S  S  F  S  H  *  G  F  R :   L  F  L  M  D  P  P  N  K  I  T  I  L  *  R  S  I  T  F  E  N  N  R  M  L  H  F  L  L  I  L  P  P  F  R  F   </first_frame>
            <second_frame>  F  T  Y  L  A  D  L  S  Y  T  K  L  S  E  S  :  F  H  S  Q  V  R  D  K  R  R  P  P  D  P  R  I  P  F  E  Y  C  Y  D  M  S :   P  D  E  N  T  S  L  I  P  S  L  S  L  T  M  S  G  G  G  Q  L  A  V  N  D  P  I  I  V  I  S  T  Q  :  N  Q  L  M  Y  C  L  A  I  V  K  S  D  A  L  N  I  I  G   : Q  N  F  M  T  G  Y  R  F  V  F  D  R  E  K  I  I  L  G  W  K  K  F  D   : C  Y  D  I  E  K  I  D  H  F  P  S  Q  P  V  N  T  T  H  V  P  P  A  F  A  V  V  P  G  N  D  N  A  E  K  S  H  E  R  T  T  T  T  R  Q  S  S  F  A  S  S  V  Y  Q  T  C  Y  L  N  L  I  N  C  F  L  A  S  V  I  L  L  L  L  *  L  L  P  *  A  H  S  H  T  E  D  S   : G  C  F  *  W  T  L  Q  T  K  S  L  F  C  D  V  A  *  H  L  R  I  I  G  C  C  I  F  C  *  Y  Y  L  R  F  V  L  </second_frame>
            <third_frame>   L  P  I  L  R  T  Y  P  I  Q  S  F  Q  K  V :   S  I  L  K  Y  E  T  S  G  V  H  L  I  R  G  S  P  L  N  I  V  M  I  *   : V  L  M  K  I  L  A  *  F  L  V  *  A  *  L  *  V  G  E  A  N  L  L  S  M  I  Q  L  L  S  Y  P  H  R :   I  N  *  C  I  A  W  P  L  *  R  V  M  L  *  I  *  L  D  :  R  T  S  *  L  D  T  A  L  C  L  I  E  K  K  S  S  S  V  G  R  N  L  I  :  V  M  I  L  R  K  *  T  I  S  H  H  N  L  L  I  P  P  M  F  H  L  P  L  L  L  C  L  E  M  I  M  Q  R  N  H  M  K  G  R  Q  L  L  V  K  V  L  L  H  H  L  F  I  K  H  V  I  *  T  S  *  T  A  S  *  H  L  *  Y  C  Y  F  Y  N  C  Y  H  K  L  I  L  T  L  R  I  Q  :  V  V  F  D  G  P  S  K  Q  N  H  Y  F  V  T  *  H  N  I  *  E  *  *  D  V  A  F  S  V  N  T  T  S  V  S  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88651" stop="88695"/>
                    <exon start="88779" stop="88852"/>
                    <exon start="88944" stop="89043"/>
                    <exon start="89137" stop="89194"/>
                    <exon start="90325" stop="90396"/>
                    <exon start="90491" stop="90711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYLADLSYTKLSESFHSQVRDKRRPPDPRIPFEYCYDMSPDENTSLIPSLSLTMSGGGQLAVNDPIIVISTQNQLMYCLAIVKSDALNIIGQNFMTGYRFVFDREKIILGWKKFDCYDIEKIDHFPSQPVNTTHVPPAFAVVPGNDNAEKSHERTTTTRQSSFASSVYQTCYLNLINCFLASVILLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="91130" PGL_stop="90254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91130" e_stop="90913"/>
            <exon e_start="90571" e_stop="90254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91130" e_stop="90913" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="90912" i_stop="90572" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90571" e_stop="90254" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91130" stop="90913"/>
              <exon start="90571" stop="90254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTCCAAAAATCCACTACTATATTATATATAAAAATAAAATAAAAGAGAGTCCATAATGTTAATCATCGCCAAAGCTAAGGTTGATTCGAGATTTGAAGTTAGTAGAGACGTAAATGCAGTTATTGATTCAAGCCTAAGGTAGTAGATATGTTTTAGCTGTGGCTGTGGAACGAGGTGGCACTGTACAATCTCACTGTTCTATTGCAATCATAAG : GCACAACAGCAAAGGCAGGTGGAACATGGGTGGTATTAACAGGTTGTGATGGGAAATGGTCTATTTTCTCAATATCATAACCTGCATGAAGGCCACAAGACCAAAAGTATGAAAAGAATAATCTTCTTGTAATATCTAAGTTATTGGAAGAAAGAACACCAAAAACAATACTCACAATCAAATTTCTTCCAACCGAGGATGATTTTTTCTCGATCAAACACAAAGCGGTATCCAGTCATGAAGTTCTCTGGAAAAAGATCAGTAAGAGCAACAACAGTCAGATATCACAATTTGGAAATGACTAGTACAATTTTTTAG</gDNA_template>
            <first_frame> T  L  P  K  I  H  Y  Y  I  I  Y  K  N  K  I  K  E  S  P  *  C  *  S  S  P  K  L  R  L  I  R  D  L  K  L  V  E  T  *  M  Q  L  L  I  Q  A  *  G  S  R  Y  V  L  A  V  A  V  E  R  G  G  T  V  Q  S  H  C  S  I  A  I  I  R :   H  N  S  K  G  R  W  N  M  G  G  I  N  R  L  *  W  E  M  V  Y  F  L  N  I  I  T  C  M  K  A  T  R  P  K  V  *  K  E  *  S  S  C  N  I  *  V  I  G  R  K  N  T  K  N  N  T  H  N  Q  I  S  S  N  R  G  *  F  F  L  D  Q  T  Q  S  G  I  Q  S  *  S  S  L  E  K  D  Q  *  E  Q  Q  Q  S  D  I  T  I  W  K  *  L  V  Q  F  F   </first_frame>
            <second_frame>  H  F  Q  K  S  T  T  I  L  Y  I  K  I  K  *  K  R  V  H  N  V  N  H  R  Q  S  *  G  *  F  E  I  *  S  *  *  R  R  K  C  S  Y  *  F  K  P  K  V  V  D  M  F  *  L  W  L  W  N  E  V  A  L  Y  N  L  T  V  L  L  Q  S  *   : G  T  T  A  K  A  G  G  T  W  V  V  L  T  G  C  D  G  K  W  S  I  F  S  I  S  *  P  A  *  R  P  Q  D  Q  K  Y  E  K  N  N  L  L  V  I  S  K  L  L  E  E  R  T  P  K  T  I  L  T  I  K  F  L  P  T  E  D  D  F  F  S  I  K  H  K  A  V  S  S  H  E  V  L  W  K  K  I  S  K  S  N  N  S  Q  I  S  Q  F  G  N  D  *  Y  N  F  L  </second_frame>
            <third_frame>   T  S  K  N  P  L  L  Y  Y  I  *  K  *  N  K  R  E  S  I  M  L  I  I  A  K  A  K  V  D  S  R  F  E  V  S  R  D  V  N  A  V  I  D  S  S  L  R  *  *  I  C  F  S  C  G  C  G  T  R  W  H  C  T  I  S  L  F  Y  C  N  H  K  :  A  Q  Q  Q  R  Q  V  E  H  G  W  Y  *  Q  V  V  M  G  N  G  L  F  S  Q  Y  H  N  L  H  E  G  H  K  T  K  S  M  K  R  I  I  F  L  *  Y  L  S  Y  W  K  K  E  H  Q  K  Q  Y  S  Q  S  N  F  F  Q  P  R  M  I  F  S  R  S  N  T  K  R  Y  P  V  M  K  F  S  G  K  R  S  V  R  A  T  T  V  R  Y  H  N  L  E  M  T  S  T  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90482" stop="90267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQDQKYEKNNLLVISKLLEERTPKTILTIKFLPTEDDFFSIKHKAVSSHEVLWKKISKSNNSQISQFGND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="94934" PGL_stop="98949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94934" e_stop="95366"/>
            <exon e_start="95916" e_stop="96051"/>
            <exon e_start="96663" e_stop="96898"/>
            <exon e_start="97130" e_stop="97354"/>
            <exon e_start="97449" e_stop="97584"/>
            <exon e_start="97667" e_stop="97740"/>
            <exon e_start="97820" e_stop="97919"/>
            <exon e_start="97995" e_stop="98055"/>
            <exon e_start="98352" e_stop="98423"/>
            <exon e_start="98501" e_stop="98949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.640" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="94934" e_stop="95366" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95916" e_stop="96051" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96663" e_stop="96898" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.987">
            <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97130" e_stop="97354" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97449" e_stop="97584" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97667" e_stop="97740" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.640">
            <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97820" e_stop="97919" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97995" e_stop="98055" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="98352" e_stop="98423" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="98501" e_stop="98949" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94934" stop="95366"/>
              <exon start="95916" stop="96006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94938" stop="95366"/>
              <exon start="95916" stop="96051"/>
              <exon start="96663" stop="96816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95149" stop="95366"/>
              <exon start="95916" stop="96051"/>
              <exon start="96663" stop="96898"/>
              <exon start="97130" stop="97278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96008" stop="96051"/>
              <exon start="96663" stop="96898"/>
              <exon start="97130" stop="97354"/>
              <exon start="97449" stop="97584"/>
              <exon start="97667" stop="97708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96009" stop="96051"/>
              <exon start="96663" stop="96898"/>
              <exon start="97130" stop="97354"/>
              <exon start="97449" stop="97455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97270" stop="97354"/>
              <exon start="97449" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97468" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97468" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97468" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97469" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97473" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97476" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97496" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97537" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97581" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204167" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97674" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97677" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97678" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97715" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97861" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98591" stop="98949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98742" stop="98948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTCCTTTCTCAAAATCCCCTTTTATCTCCTCACCTTTTCTCTTTCTTTCTCCCTGTATATCTATATATCAACATACAAAGAATCAGTCTTTTTTGTTTTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT : CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA : CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG : TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA : CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG : TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTATACCTGATATATGTATTGTAAATATAACTCTGATTTCTTTCTGTCCTTTTTCCGTTCAAGATTCAATATAATACATTTCGTTCATTAAAAATAGCTT</gDNA_template>
            <first_frame> F  F  F  P  F  S  K  S  P  F  I  S  S  P  F  L  F  L  S  P  C  I  S  I  Y  Q  H  T  K  N  Q  S  F  L  F  F  L  I  Q  T  C  L  I  L  V  K  F  V  I  F  S  L  P  Q  L  F  S  W  R  F  L  D  T  S  *  R  Q  L  M  G  L  G  H  S  G  L  I  S  I  T  G  I  R  I  R  *  R  V  F  W  T  F  M  G  C  L  R  R  G  L  L  N  I  I  Q  L  G  L  N  V  I  G  L  L  R  A  V  A  L  L  I  Q  L  I  P  Q  C  P  L  L  F  L  E  E  M  K  L  C  G  S  V  L  W  D   : S  C  I  M  Q  M  S  L  W  A  V  L  G  Y  H  F  *  W  H  L  T  L  A  V  T  Y  F  G  Y  H  V  I  A  A  T  V  C  V  P  F  R  H  A  V  E  D :   E  *  I  L  I  S  T  A  L  I  R  L  Q  R  V  R  L  F  R  A  M  A  L  C  V  D  K  I  D  D  A  *  L  R  R  M  H  V  L  M  E  L  H  I  S  P  I  T  P  H  H  Q  G  Y  W  W  K  T  S  C  T  *  K  Q  I  M  L  N  K  K  A  L  K  L  Q  L  L  W   : V  V  G  *  D  K  Q  V  H  F  *  L  V  Q  L  L  M  V  Y  L  D  L  V  L  K  I  Y  L  S  Q  A  C  *  Q  A  K  V  L  L  Q  I  L  S  L  C  A  L  D  L  M  V  L  E  E  *  F  L  E  I  K  E  V  Q  A  K  E  K  H  H  S  I  L  I  N  H   : T  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *   : V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  I  P  D  I  C  I  V  N  I  T  L  I  S  F  C  P  F  S  V  Q  D  S  I  *  Y  I  S  F  I  K  N  S   </first_frame>
            <second_frame>  F  F  F  L  S  Q  N  P  L  L  S  P  H  L  F  S  F  F  L  P  V  Y  L  Y  I  N  I  Q  R  I  S  L  F  C  F  S  L  Y  K  H  A  *  F  W  *  N  S  *  F  F  P  C  P  N  Y  F  L  G  D  S  W  I  P  V  E  D  N  *  W  V  W  D  I  R  V  *  Y  P  S  P  V  F  G  S  G  K  G  Y  F  G  P  S  W  V  A  *  E  G  D  C  *  I  L  F  S  L  D  S  T  *  S  V  C  *  G  P  S  P  C  *  Y  N  *  S  H  S  A  P  C  F  F  W  R  K  *  N  F  A  A  Q  F  F  G  I  :  L  A  L  C  K  C  H  C  G  Q  S  W  A  I  I  S  S  G  T  *  H  W  Q  *  L  I  L  A  T  M  *  L  Q  Q  L  C  A  C  P  S  D  T  Q  W  R   : T  N  K  S  *  Y  L  Q  P  *  Y  V  F  N  E  *  D  C  S  V  Q  W  H  F  V  W  T  K  *  T  M  L  S  F  A  E  C  M  C  L  W  S  C  I  S  L  Q  *  H  L  I  I  R  G  T  G  G  R  H  L  A  L  R  N  K  *  C  S  T  K  K  H  *  S  S  N  C  S  G  :  L  W  D  K  T  N  R  C  I  F  N  W  C  S  S  *  W  S  I  W  T  W  Y  *  K  Y  I  C  P  K  H  V  S  K  Q  R  S  C  C  K  F  F  L  Y  V  L  W  T  *  W  Y  W  K  N  S  F  W  R  *  R  K  S  R  P  R  R  N  T  T  Q  S  *  S  T  T  :  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  :  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L  Y  L  I  Y  V  L  *  I  *  L  *  F  L  S  V  L  F  P  F  K  I  Q  Y  N  T  F  R  S  L  K  I  A  </second_frame>
            <third_frame>   F  F  S  F  L  K  I  P  F  Y  L  L  T  F  S  L  S  F  S  L  Y  I  Y  I  S  T  Y  K  E  S  V  F  F  V  F  P  Y  T  N  M  P  N  S  G  K  I  R  N  F  F  L  A  P  I  I  F  L  A  I  L  G  Y  Q  L  K  T  T  D  G  F  G  T  F  G  F  D  I  H  H  R  Y  S  D  P  V  K  G  I  L  D  L  H  G  L  P  E  K  G  T  V  E  Y  Y  S  A  W  T  Q  R  D  R  F  V  K  G  R  R  L  A  D  T  T  N  P  T  V  P  L  A  F  S  G  G  N  E  T  L  R  L  S  S  L  G  F :   L  H  Y  A  N  V  T  V  G  S  P  G  L  S  F  L  V  A  L  D  T  G  S  D  L  F  W  L  P  C  D  C  S  N  C  V  R  A  L  Q  T  R  S  G  G  :  R  I  N  L  N  I  Y  S  P  N  T  S  S  T  S  E  I  V  P  C  N  G  T  L  C  G  Q  N  R  R  C  L  A  S  Q  N  A  C  A  Y  G  V  A  Y  L  S  N  N  T  S  S  S  G  V  L  V  E  D  I  L  H  L  E  T  N  N  A  Q  Q  K  S  I  E  A  P  I  A  L  G :   C  G  I  R  Q  T  G  A  F  L  T  G  A  A  P  N  G  L  F  G  L  G  I  E  N  I  S  V  P  S  M  L  A  S  K  G  L  A  A  N  S  F  S  M  C  F  G  P  D  G  I  G  R  I  V  F  G  D  K  G  S  P  G  Q  G  E  T  P  L  N  L  D  Q  P  H :   P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  S :   A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V  Y  T  *  Y  M  Y  C  K  Y  N  S  D  F  F  L  S  F  F  R  S  R  F  N  I  I  H  F  V  H  *  K  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94936" stop="95366"/>
                    <exon start="95916" stop="96051"/>
                    <exon start="96663" stop="96898"/>
                    <exon start="97130" stop="97354"/>
                    <exon start="97449" stop="97584"/>
                    <exon start="97667" stop="97740"/>
                    <exon start="97820" stop="97919"/>
                    <exon start="97995" stop="98055"/>
                    <exon start="98352" stop="98423"/>
                    <exon start="98501" stop="98766"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSFLKIPFYLLTFSLSFSLYIYISTYKESVFFVFPYTNMPNSGKIRNFFLAPIIFLAILGYQLKTTDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGTVEYYSAWTQRDRFVKGRRLADTTNPTVPLAFSGGNETLRLSSLGFLHYANVTVGSPGLSFLVALDTGSDLFWLPCDCSNCVRALQTRSGGRINLNIYSPNTSSTSEIVPCNGTLCGQNRRCLASQNACAYGVAYLSNNTSSSGVLVEDILHLETNNAQQKSIEAPIALGCGIRQTGAFLTGAAPNGLFGLGIENISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPGQGETPLNLDQPHPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGISANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="103880" PGL_stop="99178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103880" e_stop="103435"/>
            <exon e_start="101851" e_stop="101785"/>
            <exon e_start="101563" e_stop="101401"/>
            <exon e_start="101282" e_stop="101154"/>
            <exon e_start="100728" e_stop="100025"/>
            <exon e_start="99890" e_stop="99178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103880" e_stop="103435" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103434" i_stop="101852" i_length="1583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101851" e_stop="101785" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101784" i_stop="101564" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="101563" e_stop="101401" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101400" i_stop="101283" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101282" e_stop="101154" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="100728" e_stop="100025" e_length="704"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="99890" e_stop="99178" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103880" stop="103435"/>
              <exon start="101851" stop="101785"/>
              <exon start="101563" stop="101401"/>
              <exon start="101282" stop="101189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101267" stop="101154"/>
              <exon start="100728" stop="100055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101267" stop="101154"/>
              <exon start="100728" stop="100204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101267" stop="101154"/>
              <exon start="100728" stop="100349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101265" stop="101154"/>
              <exon start="100728" stop="100167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100684" stop="100048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100684" stop="100161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100525" stop="100025"/>
              <exon start="99890" stop="99866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100425" stop="100025"/>
              <exon start="99890" stop="99549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100425" stop="100025"/>
              <exon start="99890" stop="99674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100135" stop="100025"/>
              <exon start="99890" stop="99486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100135" stop="100025"/>
              <exon start="99890" stop="99633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99721" stop="99178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG : AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG : GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG : GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG : CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG : GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</gDNA_template>
            <first_frame> V  L  G  F  *  R  E  E  E  R  I  H  G  V  K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R :   R  R  K  R  *  *  *  D  G  Q  *  E  I  T  R  L  *  D  E  S  A  Q  :  V  L  L  C  C  G  G  M  R  F  K  C  Y  S  *  L  S  L  Q  N  L  *  W  G  *  V  *  E  N  I  K  Q  I  R  F  E  V  Y  S  R  F  H  G  I  Q  A  S  T  T  *  H  C  N  R   : G  P  C  R  L  *  R  S  R  F  S  H  S  S  F  A  A  *  Q  Y  *  T  Y  M  G  *  G  *  A  T  T  H  Q  D  L  E  E  T  V  Q  *  *  T   : A  C  R  Y  G  V  E  R  V  F  G  F  *  *  E  W  K  *  *  *  *  G  R  *  *  *  H  R  R  *  I  C  Q  K  E  E  K  T  *  Y  L  P  C  V  T  P  V  W  G  G  F  R  W  K  *  R  G  R  *  P  G  H  G  G  H  I  *  H  W  I  G  R  S  K  Q  T  Y  P  R  K  E  G  *  T  V  G  N  C  V  G  S  L  S  Q  K  E  K  G  E  K  E  V  Q  E  R  *  H  Q  G  F  I  R  R  *  E  Q  R  *  *  S  R  T  Y  R  *  T  *  G  L  L  H  *  R  A  F  R  K  R  G  *  G  F  P  T  *  E  H  Q  E  R  E  A  E  P  *  S  I  *  R  S  *  S  K  *  S  R  A  *  A  I  T  C  R  *  Q  R  R  R  P  *  L  E  G  L  Q  H  E  T  *  K  G  E  G  E  E  G  *  R  N  S  S  R  G  Q  V  A  N  Y  R  L  *  R  S  T  V  F  I  S  L  *  I  T  P  L  C  I  G  P  H  R  S  S  V  Q  T  :  E  C  S  L  C  S  S  V  G  T  K  A  A  Q  G  R  R  R  N  C  E  C  K  T  T  A  R  S  N  *  K  I  R  V  S  N  K  *  K  I  A  V  W  *  F  A  F  K  K  G  E  A  R  A  I  F  F  S  *  I  Y  *  D  E  I  T  T  I  I  I  V  L  S  R  *  G  G  S  K  E  *  K  K  S  S  N  V  K  E  H  R  W  R  G  R  K  E  G  E  R  K  K  S  S  K  G  K  E  E  R  *  K  A  S  K  I  R  E  *  K  V  R  L  Y  K  F  *  S  K  T  T  H  G  I  R  Q  T  R  F  L  K  M  D  H  G  S  V  W  V  N  S  G  L  S  E  S  Q  Y  V  A  T  L  I  V  F  T  L  F  F  T  V  W  P  I  F  M  V  A  S  L  F  C  C  L  N  L  Q  R  C  T  L  Y  H  V  Q  F  F  F  F  Y  S  S  R  L  *  T  *  C  N  S  S  I  L  V  L  R  F  T  I  Q  R  L  L  F  *  L  L  S  *  S  L  F  G  K  K  Y  H   </first_frame>
            <second_frame>  F  *  G  F  R  E  K  K  N  V  F  M  E  S  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E   : E  E  E  K  D  D  D  E  M  D  N  E  K  L  R  A  Y  E  M  S  R  L  R :   Y  Y  Y  A  V  V  E  C  D  S  S  A  T  A  D  Y  L  Y  K  T  C  D  G  V  E  F  E  R  T  S  N  K  L  D  L  R  F  I  P  D  S  M  E  F  K  H  Q  P  R  D  I  A  T  E  :  A  P  A  D  Y  E  G  L  D  F  H  T  R  A  L  Q  H  S  N  I  E  L  T  W  D  E  D  E  P  Q  R  I  R  T  L  K  R  Q  F  N  D  K  Q  :  L  A  D  M  E  L  K  E  F  L  A  S  D  E  S  G  S  D  D  S  E  E  G  D  D  D  T  E  D  K  S  A  K  R  K  K  K  H  D  T  Y  R  A  L  L  Q  S  G  E  G  S  D  G  N  N  E  D  D  D  Q  D  M  E  V  T  F  N  T  G  L  E  D  L  S  K  R  I  L  E  K  K  D  K  Q  S  E  T  V  W  E  A  Y  L  R  K  K  R  E  K  K  K  S  R  K  G  N  T  K  D  S  S  E  D  E  S  S  D  S  D  Q  E  P  I  D  E  P  E  D  F  F  I  E  E  P  S  A  K  G  D  K  D  S  Q  R  K  S  T  R  K  G  K  Q  S  L  E  A  S  E  E  A  E  A  S  R  A  E  L  E  L  L  L  A  D  D  K  G  G  D  P  N  L  K  G  Y  N  M  K  P  K  K  A  K  G  K  K  G  K  G  T  P  V  E  D  K  L  P  T  I  D  Y  E  D  P  R  F  S  S  L  F  K  S  H  L  F  A  L  D  P  T  D  P  Q  F  K  R :   S  A  A  Y  A  R  Q  L  A  Q  K  Q  H  K  V  E  E  E  I  V  S  A  K  Q  Q  P  G  V  T  R  K  L  E  S  A  T  N  E  K  L  Q  S  G  D  L  P  S  R  K  E  K  H  E  L  S  S  L  V  K  S  I  K  M  K  S  Q  Q  L  S  L  S  S  Q  G  K  A  V  V  K  N  E  K  S  Q  A  M  S  K  N  I  D  G  E  G  G  K  K  E  N  E  K  S  R  A  R  A  K  K  K  D  E  K  R  V  K  *  E  S  E  K  *  G  Y  I  N  F  D  Q  R  L  L  M  G  L  D  R  R  G  S  *  K  W  I  M  V  Q  Y  G  *  I  V  A  L  V  N  L  N  T  *  Q  L  *  L  F  L  L  Y  F  L  L  Y  G  L  Y  L  W  L  H  H  C  F  A  V  L  T  C  R  D  V  R  C  T  M  F  N  F  F  F  F  T  V  V  D  C  K  L  N  V  I  P  L  Y  S  S  *  D  S  Q  Y  S  D  F  C  S  D  Y  *  A  E  V  C  L  E  R  N  T  T  </second_frame>
            <third_frame>   F  R  V  L  E  R  R  R  T  Y  S  W  S  Q  K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  :  K  K  K  K  M  M  M  R  W  T  M  R  N  Y  A  P  M  R  *  V  G  S   : G  I  I  M  L  W  W  N  A  I  Q  V  L  Q  L  I  I  F  T  K  L  V  M  G  L  S  L  R  E  H  Q  T  N  *  I  *  G  L  F  Q  I  P  W  N  S  S  I  N  H  V  T  L  Q  Q  R :   P  L  Q  I  M  K  V  *  I  F  T  L  E  L  C  S  I  A  I  L  N  L  H  G  M  R  M  S  H  N  A  S  G  P  *  R  D  S  S  M  I  N  S :   L  Q  I  W  S  *  K  S  F  W  L  L  M  R  V  E  V  M  I  V  R  K  V  M  M  T  Q  K  I  N  L  P  K  G  R  K  N  M  I  P  T  V  R  Y  S  S  L  G  R  V  Q  M  E  I  T  R  T  M  T  R  T  W  R  S  H  L  T  L  D  W  K  I  *  A  N  V  S  *  K  R  R  I  N  S  R  K  L  C  G  K  L  I  S  E  R  K  G  R  K  R  S  P  G  K  V  T  P  R  I  H  Q  K  M  R  A  A  I  V  I  K  N  L  *  M  N  L  R  T  S  S  L  K  S  L  P  Q  K  G  I  R  I  P  N  V  R  A  P  G  K  G  S  R  A  L  K  H  L  K  K  L  K  Q  V  E  Q  S  L  S  Y  Y  L  Q  M  T  K  E  E  T  L  T  *  R  V  T  T  *  N  L  K  R  R  R  G  R  R  V  K  E  L  Q  *  R  T  S  C  Q  L  *  I  M  K  I  H  G  F  H  L  S  L  N  H  T  S  L  H  W  T  P  Q  I  L  S  S  N   : G  V  Q  L  M  L  V  S  W  H  K  S  S  T  R  S  K  K  K  L  *  V  Q  N  N  S  P  E  *  L  E  N  *  S  Q  Q  Q  M  K  N  C  S  L  V  I  C  L  Q  E  R  R  S  T  S  Y  L  L  *  L  N  L  L  R  *  N  H  N  N  Y  H  C  P  L  K  V  R  R  *  *  R  M  K  K  V  K  Q  C  Q  R  T  S  M  E  R  E  E  R  R  R  T  K  K  V  E  Q  G  Q  R  R  K  M  K  S  E  *  N  K  R  V  K  S  K  V  I  *  I  L  I  K  D  Y  S  W  D  *  T  D  E  V  P  E  N  G  S  W  F  S  M  G  E  *  W  P  *  *  I  S  I  R  S  N  F  N  C  F  Y  F  I  F  Y  C  M  A  Y  I  Y  G  C  I  I  V  L  L  S  *  L  A  E  M  Y  V  V  P  C  S  I  F  F  F  L  Q  *  S  T  V  N  L  M  *  F  L  Y  T  R  L  E  I  H  N  T  A  T  S  V  L  I  I  E  L  K  F  V  W  K  E  I  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103873" stop="103435"/>
                    <exon start="101851" stop="101785"/>
                    <exon start="101563" stop="101401"/>
                    <exon start="101282" stop="101154"/>
                    <exon start="100728" stop="100025"/>
                    <exon start="99890" stop="99542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1848</number_coding_nucleotides>
                  <number_encoded_amino_acids>616</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFREKKNVFMESKNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEKDDDEMDNEKLRAYEMSRLRYYYAVVECDSSATADYLYKTCDGVEFERTSNKLDLRFIPDSMEFKHQPRDIATEAPADYEGLDFHTRALQHSNIELTWDEDEPQRIRTLKRQFNDKQLADMELKEFLASDESGSDDSEEGDDDTEDKSAKRKKKHDTYRALLQSGEGSDGNNEDDDQDMEVTFNTGLEDLSKRILEKKDKQSETVWEAYLRKKREKKKSRKGNTKDSSEDESSDSDQEPIDEPEDFFIEEPSAKGDKDSQRKSTRKGKQSLEASEEAEASRAELELLLADDKGGDPNLKGYNMKPKKAKGKKGKGTPVEDKLPTIDYEDPRFSSLFKSHLFALDPTDPQFKRSAAYARQLAQKQHKVEEEIVSAKQQPGVTRKLESATNEKLQSGDLPSRKEKHELSSLVKSIKMKSQQLSLSSQGKAVVKNEKSQAMSKNIDGEGGKKENEKSRARAKKKDEKRVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99509" stop="99276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKTTHGIRQTRFLKMDHGSVWVNSGLSESQYVATLIVFTLFFTVWPIFMVASLFCCLNLQRCTLYHVQFFFFYSSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103838" e_stop="103362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103838" e_stop="103362" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103838" stop="103362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAA</gDNA_template>
            <first_frame> K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R  R  R  R  R  R  R  D  Q  E  *  Q  W  D  E  *  G  R  N  *  R  P  *  I  E </first_frame>
            <second_frame>  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E  E  E  E  E  E  E  E  T  K  S  D  S  G  T  S  E  E  E  I  E  D  H  K  L   </second_frame>
            <third_frame>   K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  K  K  K  K  K  K  R  P  R  V  T  V  G  R  V  R  K  K  L  K  T  I  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103837" stop="103364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEEEEETKSDSGTSEEEIEDHKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="108466" PGL_stop="109733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108466" e_stop="108660"/>
            <exon e_start="108735" e_stop="108923"/>
            <exon e_start="109047" e_stop="109209"/>
            <exon e_start="109293" e_stop="109733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108466" e_stop="108660" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="108661" i_stop="108734" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108735" e_stop="108923" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.989">
            <gDNA_intron_boundary i_start="108924" i_stop="109046" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109047" e_stop="109209" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.973">
            <gDNA_intron_boundary i_start="109210" i_stop="109292" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="109293" e_stop="109733" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108466" stop="108660"/>
              <exon start="108735" stop="108923"/>
              <exon start="109047" stop="109120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109062" stop="109209"/>
              <exon start="109293" stop="109733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCATTATTGAGCACATTTATTTTTTTCTCCATCTACTATTCTCAAAGCAATGCACTTAGTTCCAATTACTATGCAAAAACATGCCCTCAAGCTGAAGACATAGTAATGAAGGTTGTTAAGGAGGAAGCACAGAAAGACAGAACAGTGCCCGCTACACTTCTAAGGATGCATTTCCATGATTGTTTCCTACGG : GGTTGTGATGCTTCTATTTTGTTGAGCTCCAAGGGGAAAAACACCGCGGAAAAGGACGCGCCTCCTAATGGTTCTTTGCACGGATTCTATGTTATTGATGGTGCAAAGAGAGCAGTTGAAGCTATATGTCCTGGCGTAGTGTCTTGTGCTGATATTTTAGCGTTTGCTGCAAGAGATGCAGTTGTGTTA : TCAGGCGGACCTTACTGGAAGGTGCCTAAAGGAAGAAAAGACGGACGAATATCAAGAGCTAGTGAAACAACACTGCTTCCAAAGCCTACATTCAACATTTCTCAACTCCAACAAAGCTTCCATCAAAGAGGTCTCTCACTAGACGACTTGGTGGCTCTCTTAG : GTGCGCACACTCTAGGATTTACCCATTGCTCATCATTTATGAACCGTATATACAACTTCAACGCCACACATGACATCGATCCTACACTACGTCCATCGTTTGCAGCAAGCTTGAAGGGCATATGTCCACTCAAAAACAGGGCAAAAAACGCAGGAATAAGCAATGATCCTTCACCAACAACATTTGATAATACTCATTACAGGCTAATTCTACAAAAGAAAAGTTTGTTATTTTCGGATCATTCATTGCTCACTATACCAAAAACGAAGAGCTTAGTTTATAAGTTTGCTACCTCAAAAGCAGCTTTTCATAAGGCATTTTCTAATTCTATGATTAAGATGAGTAGCCTTACAGGAGGTCAAGAAGTTAGAAAAAATTGCAGGGTTGTAAACTAATTAATTATTATTAATTCTAATTTGATATTTTTATGTAATTTAAATT</gDNA_template>
            <first_frame> V  P  L  L  S  T  F  I  F  F  S  I  Y  Y  S  Q  S  N  A  L  S  S  N  Y  Y  A  K  T  C  P  Q  A  E  D  I  V  M  K  V  V  K  E  E  A  Q  K  D  R  T  V  P  A  T  L  L  R  M  H  F  H  D  C  F  L  R  :  G  C  D  A  S  I  L  L  S  S  K  G  K  N  T  A  E  K  D  A  P  P  N  G  S  L  H  G  F  Y  V  I  D  G  A  K  R  A  V  E  A  I  C  P  G  V  V  S  C  A  D  I  L  A  F  A  A  R  D  A  V  V  L  :  S  G  G  P  Y  W  K  V  P  K  G  R  K  D  G  R  I  S  R  A  S  E  T  T  L  L  P  K  P  T  F  N  I  S  Q  L  Q  Q  S  F  H  Q  R  G  L  S  L  D  D  L  V  A  L  L   : G  A  H  T  L  G  F  T  H  C  S  S  F  M  N  R  I  Y  N  F  N  A  T  H  D  I  D  P  T  L  R  P  S  F  A  A  S  L  K  G  I  C  P  L  K  N  R  A  K  N  A  G  I  S  N  D  P  S  P  T  T  F  D  N  T  H  Y  R  L  I  L  Q  K  K  S  L  L  F  S  D  H  S  L  L  T  I  P  K  T  K  S  L  V  Y  K  F  A  T  S  K  A  A  F  H  K  A  F  S  N  S  M  I  K  M  S  S  L  T  G  G  Q  E  V  R  K  N  C  R  V  V  N  *  L  I  I  I  N  S  N  L  I  F  L  C  N  L  N  </first_frame>
            <second_frame>  F  H  Y  *  A  H  L  F  F  S  P  S  T  I  L  K  A  M  H  L  V  P  I  T  M  Q  K  H  A  L  K  L  K  T  *  *  *  R  L  L  R  R  K  H  R  K  T  E  Q  C  P  L  H  F  *  G  C  I  S  M  I  V  S  Y  G :   V  V  M  L  L  F  C  *  A  P  R  G  K  T  P  R  K  R  T  R  L  L  M  V  L  C  T  D  S  M  L  L  M  V  Q  R  E  Q  L  K  L  Y  V  L  A  *  C  L  V  L  I  F  *  R  L  L  Q  E  M  Q  L  C  Y :   Q  A  D  L  T  G  R  C  L  K  E  E  K  T  D  E  Y  Q  E  L  V  K  Q  H  C  F  Q  S  L  H  S  T  F  L  N  S  N  K  A  S  I  K  E  V  S  H  *  T  T  W  W  L  S  *  :  V  R  T  L  *  D  L  P  I  A  H  H  L  *  T  V  Y  T  T  S  T  P  H  M  T  S  I  L  H  Y  V  H  R  L  Q  Q  A  *  R  A  Y  V  H  S  K  T  G  Q  K  T  Q  E  *  A  M  I  L  H  Q  Q  H  L  I  I  L  I  T  G  *  F  Y  K  R  K  V  C  Y  F  R  I  I  H  C  S  L  Y  Q  K  R  R  A  *  F  I  S  L  L  P  Q  K  Q  L  F  I  R  H  F  L  I  L  *  L  R  *  V  A  L  Q  E  V  K  K  L  E  K  I  A  G  L  *  T  N  *  L  L  L  I  L  I  *  Y  F  Y  V  I  *  I </second_frame>
            <third_frame>   S  I  I  E  H  I  Y  F  F  L  H  L  L  F  S  K  Q  C  T  *  F  Q  L  L  C  K  N  M  P  S  S  *  R  H  S  N  E  G  C  *  G  G  S  T  E  R  Q  N  S  A  R  Y  T  S  K  D  A  F  P  *  L  F  P  T   : G  L  *  C  F  Y  F  V  E  L  Q  G  E  K  H  R  G  K  G  R  A  S  *  W  F  F  A  R  I  L  C  Y  *  W  C  K  E  S  S  *  S  Y  M  S  W  R  S  V  L  C  *  Y  F  S  V  C  C  K  R  C  S  C  V   : I  R  R  T  L  L  E  G  A  *  R  K  K  R  R  T  N  I  K  S  *  *  N  N  T  A  S  K  A  Y  I  Q  H  F  S  T  P  T  K  L  P  S  K  R  S  L  T  R  R  L  G  G  S  L  R :   C  A  H  S  R  I  Y  P  L  L  I  I  Y  E  P  Y  I  Q  L  Q  R  H  T  *  H  R  S  Y  T  T  S  I  V  C  S  K  L  E  G  H  M  S  T  Q  K  Q  G  K  K  R  R  N  K  Q  *  S  F  T  N  N  I  *  *  Y  S  L  Q  A  N  S  T  K  E  K  F  V  I  F  G  S  F  I  A  H  Y  T  K  N  E  E  L  S  L  *  V  C  Y  L  K  S  S  F  S  *  G  I  F  *  F  Y  D  *  D  E  *  P  Y  R  R  S  R  S  *  K  K  L  Q  G  C  K  L  I  N  Y  Y  *  F  *  F  D  I  F  M  *  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108466" stop="108660"/>
                    <exon start="108735" stop="108923"/>
                    <exon start="109047" stop="109209"/>
                    <exon start="109293" stop="109687"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLLSTFIFFSIYYSQSNALSSNYYAKTCPQAEDIVMKVVKEEAQKDRTVPATLLRMHFHDCFLRGCDASILLSSKGKNTAEKDAPPNGSLHGFYVIDGAKRAVEAICPGVVSCADILAFAARDAVVLSGGPYWKVPKGRKDGRISRASETTLLPKPTFNISQLQQSFHQRGLSLDDLVALLGAHTLGFTHCSSFMNRIYNFNATHDIDPTLRPSFAASLKGICPLKNRAKNAGISNDPSPTTFDNTHYRLILQKKSLLFSDHSLLTIPKTKSLVYKFATSKAAFHKAFSNSMIKMSSLTGGQEVRKNCRVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="111408" PGL_stop="114865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111408" e_stop="111783"/>
            <exon e_start="112547" e_stop="112665"/>
            <exon e_start="113764" e_stop="113821"/>
            <exon e_start="113944" e_stop="114021"/>
            <exon e_start="114455" e_stop="114865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111408" e_stop="111783" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.826">
            <gDNA_intron_boundary i_start="111784" i_stop="112546" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112547" e_stop="112665" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112666" i_stop="113763" i_length="1098"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113764" e_stop="113821" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.833" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113822" i_stop="113943" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113944" e_stop="114021" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114022" i_stop="114454" i_length="433"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="114455" e_stop="114865" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111408" stop="111783"/>
              <exon start="112547" stop="112649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111416" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111526" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111540" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111540" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111571" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111572" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111573" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111573" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111581" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111582" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111586" stop="111783"/>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112547" stop="112665"/>
              <exon start="113764" stop="113821"/>
              <exon start="113944" stop="114021"/>
              <exon start="114455" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGACTAATTTTAAGAAAATCCTAAAATGGCACCAATTTGTAACCTTTTGTTATCTAGAATTTAGTTTTAAAACTATTTTTCCAAGAAATTTTGTGATTAGGCCCGACTCGAAATCGTGATATATAGTCCTTATCATCCTGCATATTCTGGAAGCCACACTCATAAAATCTTGTCGAGTACCCAGAAATCTTATTCATCCATGGCATTTGCTCACTGCTTCCTTACTGTCCCGGCTGATACTACAAACTTCCACACCGCTACTTCCATCCTTACCCGCCCCTTTTCATCTTCGGTGAGTTCTTCTTTTTCTTCCTCAAACCTCAAAACTTGCAGCCTCTCTAATTTCCACAAGAATTTGAGAATCGGACTCAAAG : TATCTGTTAAGGCTCAAGCATCTGAAGACAGCGCAGCAGCAGATGCTTTCACCAACTTCAAGCATGTACTGTTACCAATTACAGACCGGAATCCTTATCTCTCTGAGGGTTCAAGACAG : GCTGCAGCAACTGCCGCTGCTATGGCAAAGAAGTATGGAGCTGATATAACAGTTGTTG : TTATTGATGAAAAGGGGAAAGAAGCATACCCAGAGCACGAGACACAACTAGCAAGCATCCGATGGCATTTAGCTGAAG : GTGGATATCAAGAATTCAAGCTGTTAGAGCGGCTAGGTGAAGGAAGCAAGCCAACAGCCATTATTGGTGAAATTGCTGATGATATGAACTTGGATATGGTAGTTATGAGCATGGAAGCTATCCATTCCAAGCATGTAGATGCAAACCTTCTTGCTGAGTTCATCCCTTGCCCTGTATTGCTTTTGCCCCTATGAAGAAGAAATGTATCTGAAAAGCCAGTGGTGCTCGGTTTTAGGATCAGGGATATTAACCTTTTGATACTGTTCTCTACTTCATTGACCATGAACTCAAGTTTTACATTTGTGGTAAGTGGTAATAGAACAGAACAAACAAGCTGGTTCATTGCTATTTGCTTCTTAATCATGTGGAGAGATATGAATATGTTGTTTACTCTTTGAAGTATACACTTGT</gDNA_template>
            <first_frame> I  D  *  F  *  E  N  P  K  M  A  P  I  C  N  L  L  L  S  R  I  *  F  *  N  Y  F  S  K  K  F  C  D  *  A  R  L  E  I  V  I  Y  S  P  Y  H  P  A  Y  S  G  S  H  T  H  K  I  L  S  S  T  Q  K  S  Y  S  S  M  A  F  A  H  C  F  L  T  V  P  A  D  T  T  N  F  H  T  A  T  S  I  L  T  R  P  F  S  S  S  V  S  S  S  F  S  S  S  N  L  K  T  C  S  L  S  N  F  H  K  N  L  R  I  G  L  K   : V  S  V  K  A  Q  A  S  E  D  S  A  A  A  D  A  F  T  N  F  K  H  V  L  L  P  I  T  D  R  N  P  Y  L  S  E  G  S  R  Q  :  A  A  A  T  A  A  A  M  A  K  K  Y  G  A  D  I  T  V  V   : V  I  D  E  K  G  K  E  A  Y  P  E  H  E  T  Q  L  A  S  I  R  W  H  L  A  E   : G  G  Y  Q  E  F  K  L  L  E  R  L  G  E  G  S  K  P  T  A  I  I  G  E  I  A  D  D  M  N  L  D  M  V  V  M  S  M  E  A  I  H  S  K  H  V  D  A  N  L  L  A  E  F  I  P  C  P  V  L  L  L  P  L  *  R  R  N  V  S  E  K  P  V  V  L  G  F  R  I  R  D  I  N  L  L  I  L  F  S  T  S  L  T  M  N  S  S  F  T  F  V  V  S  G  N  R  T  E  Q  T  S  W  F  I  A  I  C  F  L  I  M  W  R  D  M  N  M  L  F  T  L  *  S  I  H  L  </first_frame>
            <second_frame>  *  T  N  F  K  K  I  L  K  W  H  Q  F  V  T  F  C  Y  L  E  F  S  F  K  T  I  F  P  R  N  F  V  I  R  P  D  S  K  S  *  Y  I  V  L  I  I  L  H  I  L  E  A  T  L  I  K  S  C  R  V  P  R  N  L  I  H  P  W  H  L  L  T  A  S  L  L  S  R  L  I  L  Q  T  S  T  P  L  L  P  S  L  P  A  P  F  H  L  R  *  V  L  L  F  L  P  Q  T  S  K  L  A  A  S  L  I  S  T  R  I  *  E  S  D  S  K  :  Y  L  L  R  L  K  H  L  K  T  A  Q  Q  Q  M  L  S  P  T  S  S  M  Y  C  Y  Q  L  Q  T  G  I  L  I  S  L  R  V  Q  D  R :   L  Q  Q  L  P  L  L  W  Q  R  S  M  E  L  I  *  Q  L  L  :  L  L  M  K  R  G  K  K  H  T  Q  S  T  R  H  N  *  Q  A  S  D  G  I  *  L  K  :  V  D  I  K  N  S  S  C  *  S  G  *  V  K  E  A  S  Q  Q  P  L  L  V  K  L  L  M  I  *  T  W  I  W  *  L  *  A  W  K  L  S  I  P  S  M  *  M  Q  T  F  L  L  S  S  S  L  A  L  Y  C  F  C  P  Y  E  E  E  M  Y  L  K  S  Q  W  C  S  V  L  G  S  G  I  L  T  F  *  Y  C  S  L  L  H  *  P  *  T  Q  V  L  H  L  W  *  V  V  I  E  Q  N  K  Q  A  G  S  L  L  F  A  S  *  S  C  G  E  I  *  I  C  C  L  L  F  E  V  Y  T  C </second_frame>
            <third_frame>   R  L  I  L  R  K  S  *  N  G  T  N  L  *  P  F  V  I  *  N  L  V  L  K  L  F  F  Q  E  I  L  *  L  G  P  T  R  N  R  D  I  *  S  L  S  S  C  I  F  W  K  P  H  S  *  N  L  V  E  Y  P  E  I  L  F  I  H  G  I  C  S  L  L  P  Y  C  P  G  *  Y  Y  K  L  P  H  R  Y  F  H  P  Y  P  P  L  F  I  F  G  E  F  F  F  F  F  L  K  P  Q  N  L  Q  P  L  *  F  P  Q  E  F  E  N  R  T  Q  S :   I  C  *  G  S  S  I  *  R  Q  R  S  S  R  C  F  H  Q  L  Q  A  C  T  V  T  N  Y  R  P  E  S  L  S  L  *  G  F  K  T   : G  C  S  N  C  R  C  Y  G  K  E  V  W  S  *  Y  N  S  C  C :   Y  *  *  K  G  E  R  S  I  P  R  A  R  D  T  T  S  K  H  P  M  A  F  S  *  R :   W  I  S  R  I  Q  A  V  R  A  A  R  *  R  K  Q  A  N  S  H  Y  W  *  N  C  *  *  Y  E  L  G  Y  G  S  Y  E  H  G  S  Y  P  F  Q  A  C  R  C  K  P  S  C  *  V  H  P  L  P  C  I  A  F  A  P  M  K  K  K  C  I  *  K  A  S  G  A  R  F  *  D  Q  G  Y  *  P  F  D  T  V  L  Y  F  I  D  H  E  L  K  F  Y  I  C  G  K  W  *  *  N  R  T  N  K  L  V  H  C  Y  L  L  L  N  H  V  E  R  Y  E  Y  V  V  Y  S  L  K  Y  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111510" stop="111783"/>
                    <exon start="112547" stop="112665"/>
                    <exon start="113764" stop="113821"/>
                    <exon start="113944" stop="114021"/>
                    <exon start="114455" stop="114648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARLEIVIYSPYHPAYSGSHTHKILSSTQKSYSSMAFAHCFLTVPADTTNFHTATSILTRPFSSSVSSSFSSSNLKTCSLSNFHKNLRIGLKVSVKAQASEDSAAADAFTNFKHVLLPITDRNPYLSEGSRQAAATAAAMAKKYGADITVVVIDEKGKEAYPEHETQLASIRWHLAEGGYQEFKLLERLGEGSKPTAIIGEIADDMNLDMVVMSMEAIHSKHVDANLLAEFIPCPVLLLPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114649" stop="114852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNVSEKPVVLGFRIRDINLLILFSTSLTMNSSFTFVVSGNRTEQTSWFIAICFLIMWRDMNMLFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="117216" PGL_stop="115513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117216" e_stop="116952"/>
            <exon e_start="116882" e_stop="116587"/>
            <exon e_start="115541" e_stop="115513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.886" e_score="0.993"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117216" e_stop="116952" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116951" i_stop="116883" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="116882" e_stop="116587" e_length="296"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.886">
            <gDNA_intron_boundary i_start="116586" i_stop="115542" i_length="1045"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="115541" e_stop="115513" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117216" stop="116952"/>
              <exon start="116882" stop="116587"/>
              <exon start="115541" stop="115513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTAATAATAAGATATGGTGAAAGACTACGTTGATCCACCTTCAGCTCCGCTGTTTCAAACAGCGGAGCTCTACAACTGGTCTTTTTACAGAGCCTTGATTGCTGAATTTGTCGCGACGCTTCTTTTCCTCTACGTTAGCGTGGCTACTGTTATCGGCCACAAGAAGCAACTTGGTCCCTGCGATGGCGTTGGACTTGTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTGTTCTCGTGTATTCCACTGCTGGGATTTCTG : GTGGGCATATAAACCCGGCAGTGACGTTTGGGTTATTACTAGCAAGGAAGGTGTCATTACTAAGAGCGGTGGCGTATATGGTGGCGCAGTGCTTAGGAGCCATTTGCGGCGTTGGTTTAGTGAAAGGTGTGATGAAGGATGATTATACGAAGCATGGTGGCGGTGCTAATACCGTCGCAGTTGGCTACTCAACGGGCGCAGCATTAGGTGCTGAGATTATTGCTACTTTCCTTCTCATGTATACCGTATTTTCCGCCACCGACGCCAAAAGGAAAGCACGTGATTCACACGTCCCA : GTTCTAGCACCATTGCCAATTGGATTCTC</gDNA_template>
            <first_frame> H  *  *  *  D  M  V  K  D  Y  V  D  P  P  S  A  P  L  F  Q  T  A  E  L  Y  N  W  S  F  Y  R  A  L  I  A  E  F  V  A  T  L  L  F  L  Y  V  S  V  A  T  V  I  G  H  K  K  Q  L  G  P  C  D  G  V  G  L  V  G  I  A  W  A  F  G  G  M  I  F  V  L  V  Y  S  T  A  G  I  S   : G  G  H  I  N  P  A  V  T  F  G  L  L  L  A  R  K  V  S  L  L  R  A  V  A  Y  M  V  A  Q  C  L  G  A  I  C  G  V  G  L  V  K  G  V  M  K  D  D  Y  T  K  H  G  G  G  A  N  T  V  A  V  G  Y  S  T  G  A  A  L  G  A  E  I  I  A  T  F  L  L  M  Y  T  V  F  S  A  T  D  A  K  R  K  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F   </first_frame>
            <second_frame>  T  N  N  K  I  W  *  K  T  T  L  I  H  L  Q  L  R  C  F  K  Q  R  S  S  T  T  G  L  F  T  E  P  *  L  L  N  L  S  R  R  F  F  S  S  T  L  A  W  L  L  L  S  A  T  R  S  N  L  V  P  A  M  A  L  D  L  L  V  L  H  G  L  L  V  A  *  F  L  F  S  C  I  P  L  L  G  F  L  :  V  G  I  *  T  R  Q  *  R  L  G  Y  Y  *  Q  G  R  C  H  Y  *  E  R  W  R  I  W  W  R  S  A  *  E  P  F  A  A  L  V  *  *  K  V  *  *  R  M  I  I  R  S  M  V  A  V  L  I  P  S  Q  L  A  T  Q  R  A  Q  H  *  V  L  R  L  L  L  L  S  F  S  C  I  P  Y  F  P  P  P  T  P  K  G  K  H  V  I  H  T  S  Q :   F  *  H  H  C  Q  L  D  S  </second_frame>
            <third_frame>   L  I  I  R  Y  G  E  R  L  R  *  S  T  F  S  S  A  V  S  N  S  G  A  L  Q  L  V  F  L  Q  S  L  D  C  *  I  C  R  D  A  S  F  P  L  R  *  R  G  Y  C  Y  R  P  Q  E  A  T  W  S  L  R  W  R  W  T  C  W  Y  C  M  G  F  W  W  H  D  F  C  S  R  V  F  H  C  W  D  F  W :   W  A  Y  K  P  G  S  D  V  W  V  I  T  S  K  E  G  V  I  T  K  S  G  G  V  Y  G  G  A  V  L  R  S  H  L  R  R  W  F  S  E  R  C  D  E  G  *  L  Y  E  A  W  W  R  C  *  Y  R  R  S  W  L  L  N  G  R  S  I  R  C  *  D  Y  C  Y  F  P  S  H  V  Y  R  I  F  R  H  R  R  Q  K  E  S  T  *  F  T  R  P   : S  S  S  T  I  A  N  W  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117204" stop="116952"/>
                    <exon start="116882" stop="116587"/>
                    <exon start="115541" stop="115515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMVKDYVDPPSAPLFQTAELYNWSFYRALIAEFVATLLFLYVSVATVIGHKKQLGPCDGVGLVGIAWAFGGMIFVLVYSTAGISGGHINPAVTFGLLLARKVSLLRAVAYMVAQCLGAICGVGLVKGVMKDDYTKHGGGANTVAVGYSTGAALGAEIIATFLLMYTVFSATDAKRKARDSHVPVLAPLPIGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="124212" PGL_stop="124528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124212" e_stop="124528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124212" e_stop="124528" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124212" stop="124528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCACTATTTTTTTCTTTTTTCAAGAATCCAATTATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCA</gDNA_template>
            <first_frame> P  H  Y  F  F  L  F  S  R  I  Q  L  C  G  H  Q  A  V  I  T  G  D  S  L  L  L  L  L  H  L  H  P  H  L  I  H  H  F  L  Q  D  S  K  Q  W  K  K  C  G  K  I  L  I  F  L  H  F  K  I  T  L  R  I  T  L  E  I  I  I  I  F  M  I  I  I  I  K  L  L  I  L  V  E  *  F  Y  K  I  F  W  Q  G  L  L  L  M  N  L  H  Q  Q  Q  Q  Q  Q   </first_frame>
            <second_frame>  L  T  I  F  F  F  F  Q  E  S  N  Y  V  V  I  K  Q  *  *  Q  G  T  L  C  F  F  F  F  I  F  I  L  I  S  F  T  I  F  S  K  T  Q  N  N  G  R  S  V  E  R  Y  *  S  F  F  T  S  R  S  H  Y  E  L  L  *  R  S  S  S  S  S  *  S  *  S  S  S  C  *  F  W  W  N  D  F  T  R  F  F  G  K  A  F  C  *  *  I  F  T  S  S  S  S  S  S  </second_frame>
            <third_frame>   S  L  F  F  S  F  F  K  N  P  I  M  W  S  S  S  S  D  N  R  G  L  S  A  S  S  S  S  S  S  S  S  S  H  S  P  F  S  P  R  L  K  T  M  E  E  V  W  K  D  I  N  L  S  S  L  Q  D  H  T  T  N  Y  S  R  D  H  H  H  L  H  D  H  N  H  Q  A  A  N  F  G  G  M  I  L  Q  D  F  L  A  R  P  F  A  N  E  S  S  P  A  A  A  A  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124214" stop="124528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFFSFFKNPIMWSSSSDNRGLSASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLHDHNHQAANFGGMILQDFLARPFANESSPAAAAAA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124212" stop="124463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHYFFLFSRIQLCGHQAVITGDSLLLLLHLHPHLIHHFLQDSKQWKKCGKILIFLHFKITLRITLEIIIIFMIIIIKLLILVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 210 chains have been computed
$ 
$ memory statistics:
$ 371832 bytes spliced alignments in total
$ 173 spliced alignments have been stored
$ 2149 bytes was the average size of a spliced alignment
$ 39640 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1585 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 227 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:30:19
-->
