<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2006-11-03 16:18:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319842" ref_strand="+" ref_description="SGN-U319842">
      <seq>cttagttgagtccttgtccgattccactatttatatggcatattacacagtggcacacttcttgcagaaaggggacatgtatggtaatgatcgttcttcagtgaaaccagagcacttgacagatgaggtctgggaattcttgttctgtgatgggccttttcctgaaaattcttatatatcttcttctcttctaaaggagatgaagcaggaatttctctactggtatccattcgatcttagagtttctggcaaggatcttattcagaatcatcttaccttttgcatctataaccacactgccctcttccctaagcaccactggccacgtggtttcagatgcaatgggcatataatgcttaactctgagaagatgtctaagtccactgggaatttccgaacactccggcaggcaattgaagagttttcagctgatgccacacgcttttctcttgctgatgcgggtgatgggatggacgatgctaattttgtctttgaaacagctaatgctgctatcttacgtcttacaaaagaaatagcatggatgcaggaagtccttgatgcagagacatctttaagaactgggcctccatccacatatgctgaccgcgtatttgctaatgaaataaatattgcagtaaggactacagagaagaactatagtgagtacatgttccgggatgctctgaaaactggtttttatgatcttcaggctgccagagatgagtataggctctcctgtggttcaggaggcatgaaccgggatttgctatggcgatttatggatgttcaaacacgacttattgctcctatctgtccacactatgctgagtatgcctggagaaagcttttgaagaaggatggttatggcatcaaagctggctggccagaggctgatttgccagatcttagccttaagaaggccaacaaatatttgcaagacacgattgtctcgatgaggaagctgcttcagaagcaagtttctggttcaaagaaaggaaatgccaatttgactagccaaaacaaaccttctgtgggcctggtatatgtggatgagcagtatagtggatggaaaaaggaatgtttgggaatcctgcagaggaaattcgacacttcaactggctcctttgcacctgacaaagaaatcctctccgaattgcagaagagtgagatcgggcaacaaggcaacttcaaacaaatacaaaagctgtgtatgccattcttgaggttcaagaaagacgaagtagtggctgttggggttcaagcattggacttgaagcttccgtttggtgagattgaagtccttgagaagaactcggagttgatcaagagacagcttggtcttgagacattggagatcttatctatgacagatgatgctctagagagagcagggcctcatgctgcagttgtgaagcagaatcctccctcaccaggaaatccaactgctatctttctctgagtaaatcatttttgctgcataagttttgtgatgaacaagtcttgtttgagacctacatgatgtgatactctctttctagatcttttttgtccgtgcattctgcctacattctattacttgctgacattctaggtccaaattaatggtttatttgcttcaatcttgatatggagcagctgcaatcatatctccacagtagtactcgttgagtaggaatttgacaatttgagcatctttgagtttaccattctacaaggttttcctagttgtatcatcttttgatcatttctgcttatagcttgattgtcttttgatgctgtataagctgttcaagtatgactgttttttgttgagtaatttacgtaatttcataaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="93" stop="2524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="393" g_stop="2223" g_length="1831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1831" r_length="1831" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1832" polyA_stop="1856"/>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U319842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1831</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="393" e_stop="2223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTGAGTCCTTGTCCGATTCCACTATTTATATGGCATATTACACAGTGGCACACTTCTTGCAGAAAGGGGACATGTATGGTAATGATCGTTCTTCAGTGAAACCAGAGCACTTGACAGATGAGGTCTGGGAATTCTTGTTCTGTGATGGGCCTTTTCCTGAAAATTCTTATATATCTTCTTCTCTTCTAAAGGAGATGAAGCAGGAATTTCTCTACTGGTATCCATTCGATCTTAGAGTTTCTGGCAAGGATCTTATTCAGAATCATCTTACCTTTTGCATCTATAACCACACTGCCCTCTTCCCTAAGCACCACTGGCCACGTGGTTTCAGATGCAATGGGCATATAATGCTTAACTCTGAGAAGATGTCTAAGTCCACTGGGAATTTCCGAACACTCCGGCAGGCAATTGAAGAGTTTTCAGCTGATGCCACACGCTTTTCTCTTGCTGATGCGGGTGATGGGATGGACGATGCTAATTTTGTCTTTGAAACAGCTAATGCTGCTATCTTACGTCTTACAAAAGAAATAGCATGGATGCAGGAAGTCCTTGATGCAGAGACATCTTTAAGAACTGGGCCTCCATCCACATATGCTGACCGCGTATTTGCTAATGAAATAAATATTGCAGTAAGGACTACAGAGAAGAACTATAGTGAGTACATGTTCCGGGATGCTCTGAAAACTGGTTTTTATGATCTTCAGGCTGCCAGAGATGAGTATAGGCTCTCCTGTGGTTCAGGAGGCATGAACCGGGATTTGCTATGGCGATTTATGGATGTTCAAACACGACTTATTGCTCCTATCTGTCCACACTATGCTGAGTATGCCTGGAGAAAGCTTTTGAAGAAGGATGGTTATGGCATCAAAGCTGGCTGGCCAGAGGCTGATTTGCCAGATCTTAGCCTTAAGAAGGCCAACAAATATTTGCAAGACACGATTGTCTCGATGAGGAAGCTGCTTCAGAAGCAAGTTTCTGGTTCAAAGAAAGGAAATGCCAATTTGACTAGCCAAAACAAACCTTCTGTGGGCCTGGTATATGTGGATGAGCAGTATAGTGGATGGAAAAAGGAATGTTTGGGAATCCTGCAGAGGAAATTCGACACTTCAACTGGCTCCTTTGCACCTGACAAAGAAATCCTCTCCGAATTGCAGAAGAGTGAGATCGGGCAACAAGGCAACTTCAAACAAATACAAAAGCTGTGTATGCCATTCTTGAGGTTCAAGAAAGACGAAGTAGTGGCTGTTGGGGTTCAAGCATTGGACTTGAAGCTTCCGTTTGGTGAGATTGAAGTCCTTGAGAAGAACTCGGAGTTGATCAAGAGACAGCTTGGTCTTGAGACATTGGAGATCTTATCTATGACAGATGATGCTCTAGAGAGAGCAGGGCCTCATGCTGCAGTTGTGAAGCAGAATCCTCCCTCACCAGGAAATCCAACTGCTATCTTTCTCTGAGTAAATCATTTTTGCTGCATAAGTTTTGTGATGAACAAGTCTTGTTTGAGACCTACATGATGTGATACTCTCTTTCTAGATCTTTTTTGTCCGTGCATTCTGCCTACATTCTATTACTTGCTGACATTCTAGGTCCAAATTAATGGTTTATTTGCTTCAATCTTGATATGGAGCAGCTGCAATCATATCTCCACAGTAGTACTCGTTGAGTAGGAATTTGACAATTTGAGCATCTTTGAGTTTACCATTCTACAAGGTTTTCCTAGTTGTATCATCTTTTGATCATTTCTGCTTATAGCTTGATTGTCTTTTGATGCTGTATAAGCTGTTCAAGTATGACTGTTTTTTGTTGAGTAATTTACGTAATTTCAT</genome_strand>
        <mrna_strand>CTTAGTTGAGTCCTTGTCCGATTCCACTATTTATATGGCATATTACACAGTGGCACACTTCTTGCAGAAAGGGGACATGTATGGTAATGATCGTTCTTCAGTGAAACCAGAGCACTTGACAGATGAGGTCTGGGAATTCTTGTTCTGTGATGGGCCTTTTCCTGAAAATTCTTATATATCTTCTTCTCTTCTAAAGGAGATGAAGCAGGAATTTCTCTACTGGTATCCATTCGATCTTAGAGTTTCTGGCAAGGATCTTATTCAGAATCATCTTACCTTTTGCATCTATAACCACACTGCCCTCTTCCCTAAGCACCACTGGCCACGTGGTTTCAGATGCAATGGGCATATAATGCTTAACTCTGAGAAGATGTCTAAGTCCACTGGGAATTTCCGAACACTCCGGCAGGCAATTGAAGAGTTTTCAGCTGATGCCACACGCTTTTCTCTTGCTGATGCGGGTGATGGGATGGACGATGCTAATTTTGTCTTTGAAACAGCTAATGCTGCTATCTTACGTCTTACAAAAGAAATAGCATGGATGCAGGAAGTCCTTGATGCAGAGACATCTTTAAGAACTGGGCCTCCATCCACATATGCTGACCGCGTATTTGCTAATGAAATAAATATTGCAGTAAGGACTACAGAGAAGAACTATAGTGAGTACATGTTCCGGGATGCTCTGAAAACTGGTTTTTATGATCTTCAGGCTGCCAGAGATGAGTATAGGCTCTCCTGTGGTTCAGGAGGCATGAACCGGGATTTGCTATGGCGATTTATGGATGTTCAAACACGACTTATTGCTCCTATCTGTCCACACTATGCTGAGTATGCCTGGAGAAAGCTTTTGAAGAAGGATGGTTATGGCATCAAAGCTGGCTGGCCAGAGGCTGATTTGCCAGATCTTAGCCTTAAGAAGGCCAACAAATATTTGCAAGACACGATTGTCTCGATGAGGAAGCTGCTTCAGAAGCAAGTTTCTGGTTCAAAGAAAGGAAATGCCAATTTGACTAGCCAAAACAAACCTTCTGTGGGCCTGGTATATGTGGATGAGCAGTATAGTGGATGGAAAAAGGAATGTTTGGGAATCCTGCAGAGGAAATTCGACACTTCAACTGGCTCCTTTGCACCTGACAAAGAAATCCTCTCCGAATTGCAGAAGAGTGAGATCGGGCAACAAGGCAACTTCAAACAAATACAAAAGCTGTGTATGCCATTCTTGAGGTTCAAGAAAGACGAAGTAGTGGCTGTTGGGGTTCAAGCATTGGACTTGAAGCTTCCGTTTGGTGAGATTGAAGTCCTTGAGAAGAACTCGGAGTTGATCAAGAGACAGCTTGGTCTTGAGACATTGGAGATCTTATCTATGACAGATGATGCTCTAGAGAGAGCAGGGCCTCATGCTGCAGTTGTGAAGCAGAATCCTCCCTCACCAGGAAATCCAACTGCTATCTTTCTCTGAGTAAATCATTTTTGCTGCATAAGTTTTGTGATGAACAAGTCTTGTTTGAGACCTACATGATGTGATACTCTCTTTCTAGATCTTTTTTGTCCGTGCATTCTGCCTACATTCTATTACTTGCTGACATTCTAGGTCCAAATTAATGGTTTATTTGCTTCAATCTTGATATGGAGCAGCTGCAATCATATCTCCACAGTAGTACTCGTTGAGTAGGAATTTGACAATTTGAGCATCTTTGAGTTTACCATTCTACAAGGTTTTCCTAGTTGTATCATCTTTTGATCATTTCTGCTTATAGCTTGATTGTCTTTTGATGCTGTATAAGCTGTTCAAGTATGACTGTTTTTTGTTGAGTAATTTACGTAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329457" ref_strand="+" ref_description="SGN-U329457">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaagacaacttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="17779" stop="19217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18079" g_stop="18894" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="830"/>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U329457" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18079" e_stop="18894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTACTATTGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACCGTGATTGGGTTCAAGTCTCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTTGAGCCAATGCACCATAGTGATGATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTGAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGAAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGCGAATGATTAGTCGGAAAGATGAAAAAAAATTAATAATAT-GAATAAGAGTGTGGAGGGACAAAATTATAATAGTTATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGAGAAGACAATTTTTATTAGCAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATAGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAACTAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGCCACAACTCACCTCTATGGAAG</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTTTGATCCAATG---C------AT---AAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAACTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322792" ref_strand="+" ref_description="SGN-U322792">
      <seq>cagagtttatgatacgccgaaagcgtaatagaccaattgattccaaatataaaattccttaaagaaggaaggagcaaatgatcaatatggtcatgataatgaggcaagtgctataaaggagcacattgacataacacttcataaaatcttgaaaaaggttcaggtacctgaaataatgaaaaaaattgaagagatctcgataagttatgtcttgttggaatcgatatcaaataaccgtcgacggtatctttgatatgaggtagcgctcaatgatataaattgtgatgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="20056" stop="21753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20356" g_stop="21453" g_length="1098"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1099" r_length="1099" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U322792" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1098</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20356" e_stop="21453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTATGACACACCGAAAACGTTATAGACCATTCGATTCCAAATATAAATTTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAATGAGCATATTGACATAACACTTCATAAATTCTTGAAAAAGGTTCATGTACATGAAATAATG--AAATA-TGAAGAGATCTCGAATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGATGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATAAAGGTATAATGTCAGTGGGGTACAAATAAATTATAATGCGATAGTATAACCGTAAGATATCAAATATGTTTTGTGCCTTGGGGCATAAAGATTTATCGCAAAAATCCTGACATTATTAGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATATAATAAATAATTGTAATGTCTAGCTAGACAATAAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTGAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGGCCCTAATTGTCCTTGTATTTTTATGAAAAAATCTTGGTAAGGCAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAATTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGCGCAATTAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>CAGAGTTTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAGGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAAAATTGAAGAGATCTCG-ATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331336" ref_strand="+" ref_description="SGN-U331336">
      <seq>atgctttctaagctactgctgcccatcggcagtcatggtaaacaagttccgcaggcaaattgaggattccaaaaggatttgccagcagatattgcaagaacatattaaacccggtgtatcttgaggttcccaatggagaagtatgggaggttgaactggaacattctgaaggccacatttggctagctgaaggctggaaggatttcagcgactattactcaataagacgcgggaacttttttatgttcggatacaatgctcgttctcattttaatgtcactatatttgattttagtgcagcagaaattgaatatccaccagcagagattgagtcggatgattctatagatatatcggatgtggttgagtattcttctgaatatctgagccatgaccccttagtgaaggagagaaaaagaataagacaagaaagggaagaagagaatgatattccagttgaacgtcaaactattgtaattgatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="57574" stop="59423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57874" g_stop="57935" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57936" i_stop="58698" i_length="763">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58699" g_stop="59123" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="487" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U331336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57874" e_stop="57935"/>
          <exon e_start="58699" e_stop="59123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTTCTAAGCTACTGCTGCCCATCGGCAGTCATGGTAAACAAGTTCCGCAGGCAAATTGGTAAAGTCTCTTCCATTTCTTACACTTCTCAACCCAAATTCTGCAAGATCATTTTTAGCCCGCATGAATTATGCCGTCTCGTAAGTACTTTCTTCCCCATTTTCCTTCTTTAATTTCTCCTGGATTCCCAATTTTATCTTACTGTAAATCTACTTTCCCTCCTCGTTAATTGTGCATTTGAATCGAACGATTTGTAATCTAGTTCAATGAAAATTTCTCAATAAAATTCGCATAACACCCTTTACCTTGGTAATAAACTGACATTTTATGTCCTCCAACTTTGAATGTTCAAATACACTTAAACTTAAACTTGTATAAAGTCGAACAAGTGTTGTATAAAGTCGAACAAGTAATATAGGCTTCTTACGTGATATAATATACATAGGATGTTGTGTAGGATAGACATTGTCATGTAGGTCGAGTGTGTCTACTCGTGTACATTCAAAGTGTCCTAGGTAGGATAGACGTTGTCATGTAGATCGAGTGTGTCTGCTCGTGTACATTCAAAGTTGAATGATATAAATGTCAAATTAGGTCAAGTTGAAGGACATAGTGTATTATGCCAATAAAATTTGGATGCTCGGAAGTAAGAAATGAATCTTTGCCCTTATTCAATAGAAGAAGCTAGCTAATGAGCTAAGACCTATAGCTCATTGTCTCAATCAATGTAGGACAAGTTAACATAGGTCGAATAACAATGCTGTGAGTGAAGGTGTCTATTGCGAATTATGTGTGGAACTGAATTCATATTTTTTGAACACAGAGGATTCCAAAAGGATTTGCCAGCAGATATTGCAAGAACATATTAAACCCGGTGTATCTTGAGGTTCCCAATGGAGAAGTATGGGAGGTTGAACTGGAACATTCTGAAGGCCACATTTGGCTAGCTGAAGGCTGGAAGGATTTCAGCGACTATTACTCAATAAGACGCGGGAACTTTTTTATGTTCGGATACAATGCTCGTTCTCATTTTAATGTCACTATATTTGATTTTAGTGCAGCAGAAATTGAATATCCACCAGCAGAGATTGAGTCGGATGATTCTATAGATATATCGGATGTGGTTGAGTATTCTTCTGAATATCTGAGCCATGACCCCTTAGTGAAGGAGAGAAAAAGAATAAGACAAGAAGGGGAAGAAGAGAATGATATTCCAGTTGAACGTCAAACTATTGTAATTGATGAAGA</genome_strand>
        <mrna_strand>ATGCTTTCTAAGCTACTGCTGCCCATCGGCAGTCATGGTAAACAAGTTCCGCAGGCAAATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTCCAAAAGGATTTGCCAGCAGATATTGCAAGAACATATTAAACCCGGTGTATCTTGAGGTTCCCAATGGAGAAGTATGGGAGGTTGAACTGGAACATTCTGAAGGCCACATTTGGCTAGCTGAAGGCTGGAAGGATTTCAGCGACTATTACTCAATAAGACGCGGGAACTTTTTTATGTTCGGATACAATGCTCGTTCTCATTTTAATGTCACTATATTTGATTTTAGTGCAGCAGAAATTGAATATCCACCAGCAGAGATTGAGTCGGATGATTCTATAGATATATCGGATGTGGTTGAGTATTCTTCTGAATATCTGAGCCATGACCCCTTAGTGAAGGAGAGAAAAAGAATAAGACAAGAAAGGGAAGAAGAGAATGATATTCCAGTTGAACGTCAAACTATTGTAATTGATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325327" ref_strand="+" ref_description="SGN-U325327">
      <seq>atcttccagtttcggttcgcaaatcagatagtcattctaggtatatttgttatggcaaagacttgaagttggtatctgctgacgggaatgctttttcgatatccgatttcgactctaattttgaagatacagttcataagttggtcagaatttgtgtttcggcaataagaaatttctttcttccgagggaagttagtcgtaattaccttgaatacgtgaagtggaagtttgttcatcgtgtttccagttctgctctccaagttctggcgacccaggctatgttgcgggcaattggaattgggaactcccgttcacttccattggctgctgcactaaattgggtcctgaaggatggtcttggacggttgtgcaggtgcatctacactgctagcctagcatcttcttttgataccaatcttaagagagtaaggctctgtacatcagttctcttcagtttaagcattggagttgaattgttgactcctgtattcccacaatactttttgatgcttgcatcaattgccaacattgccaagcaaataagccttgcatgttacctagcaaccagtactgctgttcatagaagctttgcaattgctgataacctaggcgaggtttctgcaaaaggacagattcaaacagtctgctttgataatcttggtcttacacttgctgcaaccctgaacatactgtctgctaataatccaagattgcaggctggtctaccatttgtgatgtaccctgtcttctctgtgcttgacctttttggtatttatcaaggactaaagcatgtgcatctgcagacattaactaaggataggcttaacatcattataagcacatggattcaacaaggatttgtcccatctcctgaagaggtgagtaaacaggagggtattggcttatcttggagcagaggtaatttttaacttaaattttgccgtaacaaggccttattgcttggtttatcgctacatttttagtaaaggaacattcttaatcagctttaatcaggcagagagccatggtcaatcagaattggttgcttaaatcctagacgttgcacagcaaagctatctgtgatgacgatgcaatctttgaatagtgaagacttatatttcttgagcccagagagtttgactagtgaactgaaaaggaaccaggagtatggtgtcctactttctctgcgggaaggggcagaaactacagatgtgatcaggggcatattgcatgcaagttatgtccgcaagggtatagaagcttgtggtagttctagtgcagttctcaagcaatggtttaacctggttgaagatggcaagaggttaacagaacaaaacttgagtttcttgtatgagcaaatgttgtctttagggtgggcatgtaagaatattctgttgagcacgcaggagcaagcccgctatagtttcatagctgactgagcatatatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="61703" stop="66401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62003" g_stop="62277" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62278" i_stop="62915" i_length="638">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62916" g_stop="63062" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="422" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63063" i_stop="63308" i_length="246">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63309" g_stop="63455" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="569" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63456" i_stop="64278" i_length="823">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64279" g_stop="64341" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="632" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64342" i_stop="64423" i_length="82">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64424" g_stop="64500" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="709" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64840" i_length="340">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64841" g_stop="64946" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="815" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64947" i_stop="65156" i_length="210">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65157" g_stop="65507" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="1166" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65508" i_stop="65610" i_length="103">
            <donor d_prob="0.099" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65611" g_stop="65676" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1232" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65677" i_stop="65882" i_length="206">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65883" g_stop="66101" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1233" r_stop="1451" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U325327" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62003" e_stop="62277"/>
          <exon e_start="62916" e_stop="63062"/>
          <exon e_start="63309" e_stop="63455"/>
          <exon e_start="64279" e_stop="64341"/>
          <exon e_start="64424" e_stop="64500"/>
          <exon e_start="64841" e_stop="64946"/>
          <exon e_start="65157" e_stop="65507"/>
          <exon e_start="65611" e_stop="65676"/>
          <exon e_start="65883" e_stop="66101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCAGTTTCGGTTCGCAAATCAGATAGTCATTCTAGGTATATTTGGGATGGGAAAGACTTGAAGTTGGTATCTGTTGACGGGAATGCTTTTTCGATATCCGATTTCGACTCTAATTTTGAAGATACAGTTCATAAGTTGGTCAGAATTTGTGTTTCGGCAATAAGAAATTTCTTTCTTCCGAGGGAAGTTAGTCGTAATTACCTTGAATACGTGAAGTGGAAGTTTGTTCATCGTGTTTCCAGTTCTGCTCTCCAAGTTCTGGCGACCCAGGTACACTTATTTTTTTGGTGTTATACAACAAAGTTTAGATTTTGATGTTGAATTTTAATATCTCAGCTATTTAACTAGTTAATCTTTGGTATTCAATATTCATATTCTGGGTTTTGAACTTGTGAATTGTTGTATACGGTGAAAGTTCCATCTTTGTTTCAGCTACCAAACTTGTAAATTACTTGTATGCTAGGTATTAGAGTTGGCATTTTGATGTTGAATCTTCATATTCGATCTTCTAAAATTGTTGGTGAATGGTAGTAAATTAAGATTTTTATTTTGCATATTCATATCTCAACTATTGAACTTGTAAAACTTGTTAATTAATATATGGTGCACAGTTCAGATTTTAGACTTCATTGTTGAGTTTGGATTCTTCCGTCAGGGCTCATGATGTTTGTTTAGAGTCACTGGTGTAGTTAGTCATTATGATTTTTATATGGAGAATTAACCATTTTGTAGTTCACCTATGGAATTACTCATTATGATCTTTGTGAAGATATGAAGGTACCAGTAGTTTGCTTGATATTTGTGTGCCTGTACAATGTGAGTTAGCATCTAAGGTGCAGATCACTCAAATGCCTTCATTGACAATTTGGGCTTGCGTAATCGGTTGTGTTTTGTGAATGACGACACAGGCTATGTTGCGGGCAATTGGAATTGGGAACTCCCGTTCACTTCCATTGGCTGCTGCACTAAATTGGGTCCTGAAGGATGGTCTTGGACGGTTGTGCAGGTGCATCTACACTGCTAGCCTAGCATCTTCTTTTGATACCAATCTTAAGGTATACCTTTCTAACATAAAACAACAGGGGATAGTTTGTGCAACTCATCTTATAAAGCTTATTTTACTGATTTTTTATGATAAAAATTCAGTTTCATCTTTTGCAAAATGATGCTTATATATCTTCTATAAGAATGTTGACTTGTATGCCAGAAAGATTGCCATTTTTAAAGCAAGATTACCTCAAGAGACTATGTAAAAGTTTCATCTGTTTGTTTCTTACTTTGTTTTATGGGGTTGGCTGCAGAGAGTAAGGTTCTGTACATCAGTTCTCTTCAGTTTAAGCATTGGAGTTGAATTGTTGACTCCTGTATTCCCACAATACTTTTTGATGCTTGCATCAATTGCCAACATTGCCAAGCAAATAAGCCTTGCATGTTACCTAGCAACCAGTGTAAGTCTCAGCTACAAAACATATGATGTTATATTTATATGCATGTGTAACACTTTTGGGATCTGATCTCAAGTTCTCCAGCTTTAGCTCTTTGTTATGATACTTGTTAGATGTGAGCTACTTATTTTGGCTGCAAATGATACTTTTTCCCTTATCTTGCCATTTAGCTGTTTACCATTGTTTTATCTCCCTTTATAGTTTCTAAGAATTCCACTGCAATTTGGCATATAAATTGATTTCTTCACAATTTTGTTATGTAGAGAGGGCTGTTAAGATCTGAAGTGCCTTTGGCAAATTCAAAATAGTAGGCTAATAAATATATGCACTTATTAGGCTTTGAATTTCTACTATGAGGTCCCAGGTTAACGATGGCATAATAAGCTGACACACTTAATTTTGTCACTTGGTTGAATTGCCTTCTGAAAGTGAAATTAGTTGAAGTTGAGTACTCTAGCCTTCTAATTGCTTCCGCTAATGACCAATTCACTTTCACATGTCCTAGAGATCTGAGAGAAACAATGTCTTCAGGGTTTAAGTGTTTTTAGCATATCTGTAACAGCTGGAAGAGAATTGATGCAATTATACCTTGAATTTTTCCTCTAACATGCAAGTCAAATATGAAATCATCAGGGAGTAACTGCATGTTTTTGTCAGTTCATTTGGAAAATGGCTATTTTCAGTAATTGTAGTTCGTTTAAATAGCCAAACCGCATGTGAAATTTTTAGCTATATGAATAAGTACAGGTGTCTTCTGGATTTATCAGTCATTGATAAATTTGAGATAGAATTTCTGTTTGAGAATTTATTGTTGACATGTTCACAGACTGCTGTTCATAGAAGCTTTGCAATTGCTGATAACCTAGGCGAGGTTTCTGCAAAAGGACAGGTTCTCTACAATATTTCATCATGTCATGCTCGATTCTAATTAGTTTCACTCTTCCAATCTGACTGTTGGTTTGTGTTTTTAGATTCAAACAGTCTGCTTTGATAATCTTGGTCTTACACTTGCTGCAACCCTGAACATACTGTCTGCTAATAATCCAAGGTTTGTTTGTTTTCCAACTTGAATTTCTGAAGTATCACTGTCAGCTTTATTTATGTTTTGAAATTATATAGAGATTCTTTGCATTTGCCTCTCTGAACCTATCCATTTGGTCTATCTTTTTGTGCTTGAAGTGGAACAGTTTATATCTACACAACATGGGTCTTACTATTTCCTTTTCACACTGTAATATGAGAAGTGAAAATGTGATTTGTATCTTCCACCATTTCCTTATACAATAAGATGGAATAAGATCCTAAAAGCAAGAATTGGTTGACACATTTTTGTGCTGCTTCTGGTTATCCCTGTAATGTAGATTTCTGACTTCTGAATGATATAAAAGATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAAGGACTAAAGCATGTGCATCTGCAGACATTAACTAAGGTTGGCCCTCGTTCTCTGTGCTGAAAGCATTAGTGTTCAAGTTGAATTATACTTCCTTTTTTTGGCTACTAAACTTAGGTTATATTTTCTTCAAGGAGAAGAAATATGTGATATGAGTTATGACATGATCTATTTAACAGTCTTTATTGAGTGAACATTAATCATCTTTACGTGTTGATTCGGATATCACTCATTTTATATTAATTTCAGGATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGAAGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTATCGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGCACAGCAAAGCTATCTGTGATGACGATGCAATCTTTGAATAGTGAAGACTTATATTTCTTGAGCCCAGAGAGTTTGACTAGTGAACTGAAAAGGAACCAGGAGGTATGTATAGCCAAAAAGTAAAAGAGAGTTTTAATCAGGGACAGGCAAGCTGTTACTCTTCTAAATGTATTTCTTAAGTAGTTCTCTTGTTTTGCTATTACAGTATGGTGTCCTACTTTCTCTGCGGGAAGGGGCAGAAACTACAGATGTGATCAGGGGCATATTGCATGTAAGATGTTGTATCCATCCCTTCTCATAGTAATGGCTTTATCAAGTAGTAATTTGGAACTAATGATTTTCCTTTGCAAATGAACTAAGGGATACGGGTAAACCAATAGTTTTACTTCAAATAACTTATCTAGTAATGCTTGTTTCTTGCTGAGCTCTTTATAATGGTTAGTATTCTTTATAATAAGCTATTCTGGTGGTTGACAGGCAAGTTATGTCCGCAAGGGTATAGAAGCTTGTGGTAGTTCTAGTGCAGTTCTCAAGCAATGGTTTAACCTGGTTGAAGATGGCAAGAGGTTAACAGAACAAAACTTGAGTTTCTTGTATGAGCAAATGTTGTCTTTAGGGTGGGCATGTAAGAATATTCTGTTGAGCACGCAGGAGCAAGCCCGCTATAGTTTCATAGCTGACTGAGCATATATCTAC</genome_strand>
        <mrna_strand>ATCTTCCAGTTTCGGTTCGCAAATCAGATAGTCATTCTAGGTATATTTGTTATGGCAAAGACTTGAAGTTGGTATCTGCTGACGGGAATGCTTTTTCGATATCCGATTTCGACTCTAATTTTGAAGATACAGTTCATAAGTTGGTCAGAATTTGTGTTTCGGCAATAAGAAATTTCTTTCTTCCGAGGGAAGTTAGTCGTAATTACCTTGAATACGTGAAGTGGAAGTTTGTTCATCGTGTTTCCAGTTCTGCTCTCCAAGTTCTGGCGACCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGCGGGCAATTGGAATTGGGAACTCCCGTTCACTTCCATTGGCTGCTGCACTAAATTGGGTCCTGAAGGATGGTCTTGGACGGTTGTGCAGGTGCATCTACACTGCTAGCCTAGCATCTTCTTTTGATACCAATCTTAAG......................................................................................................................................................................................................................................................AGAGTAAGGCTCTGTACATCAGTTCTCTTCAGTTTAAGCATTGGAGTTGAATTGTTGACTCCTGTATTCCCACAATACTTTTTGATGCTTGCATCAATTGCCAACATTGCCAAGCAAATAAGCCTTGCATGTTACCTAGCAACCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGTTCATAGAAGCTTTGCAATTGCTGATAACCTAGGCGAGGTTTCTGCAAAAGGACAG..................................................................................ATTCAAACAGTCTGCTTTGATAATCTTGGTCTTACACTTGCTGCAACCCTGAACATACTGTCTGCTAATAATCCAAG....................................................................................................................................................................................................................................................................................................................................................ATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAAGGACTAAAGCATGTGCATCTGCAGACATTAACTAAG..................................................................................................................................................................................................................GATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGAAGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTATCGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGCACAGCAAAGCTATCTGTGATGACGATGCAATCTTTGAATAGTGAAGACTTATATTTCTTGAGCCCAGAGAGTTTGACTAGTGAACTGAAAAGGAACCAGGAG.......................................................................................................TATGGTGTCCTACTTTCTCTGCGGGAAGGGGCAGAAACTACAGATGTGATCAGGGGCATATTGCAT..............................................................................................................................................................................................................GCAAGTTATGTCCGCAAGGGTATAGAAGCTTGTGGTAGTTCTAGTGCAGTTCTCAAGCAATGGTTTAACCTGGTTGAAGATGGCAAGAGGTTAACAGAACAAAACTTGAGTTTCTTGTATGAGCAAATGTTGTCTTTAGGGTGGGCATGTAAGAATATTCTGTTGAGCACGCAGGAGCAAGCCCGCTATAGTTTCATAGCTGACTGAGCATATATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321688" ref_strand="+" ref_description="SGN-U321688">
      <seq>caaaaattatttcacaagtacactatcctttacttgtgctccaaaaccctagccctaaaaccctctgccaaagtgagacactttgctcgagcgatatgtcgggaagaggagaagatagtgattccgatgcgccggaagaactaacttccgtacagggaattcaaaacaatgaggagattagaaaagttgaaaaagaacacaaggctagagttgttcgggaaaggaaggaacgtcgtagacaatgggctcaaaagttaactccacgacctaaacaaaatgatgaaagcattgaagacacaaaagaacctgaagatgcccaagagtcaaaggacaatagagggatgctgcctgatgagattgtaaaaattcttgcagctcgtgaaaagaaagttttctcgtcagactcggaagaagaacatgagaagcagcctacatctaaaaacaaaagatccaagagctctgggtctggaccagttattttgaaggatctaccacctcctccgtgcttagagagctcactggcattcttgaagaaacgtaagatgcaggtgtcaagatcatcagctgttctgaacaattccagtcaagcattacgccttctatctacatctggcttgctacgtacgaaatgataggtgatgattttgaagattttagcccgagtgatgtcaatgctgtattgcttgctgtaatgagaatatgctggtagaggtgttaaatggcgagctggttttggacactgatgggtaaaccaaaaaaacaaaacaaaacattgtaacaactttttgatggtatattgcaattttattgatacttgtgggtaggaactgctgaactgtttacactgcaacagtctcatctcagtcagagtgttgaatcattaagttctgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="-" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="69653" stop="66645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69353" g_stop="69199" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69198" i_stop="69106" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69105" g_stop="69053" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="208" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69052" i_stop="67796" i_length="1257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67795" g_stop="67619" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="385" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67618" i_stop="67526" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67525" g_stop="67448" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="463" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67447" i_stop="67367" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67366" g_stop="66935" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="895" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="-" ref_id="SGN-U321688" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69353" e_stop="69199"/>
          <exon e_start="69105" e_stop="69053"/>
          <exon e_start="67795" e_stop="67619"/>
          <exon e_start="67525" e_stop="67448"/>
          <exon e_start="67366" e_stop="66935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTATTTCACAAGTACACTATCCTTTACTTGTGCTCCAAAACCCTAGCCCTAAAACCCTCTGCCAAAGTGAGACACTTTGCTCGAGCGATATGTCGGGAAGAGGAGAAGATAGTGATTCCGATGCGCCGGAAGAACTAACTTCCGTACAGGTTTGTTTAACTCTGAAATCTCTTATCAAAATTACTGTCTTTTGCGATAGCAGATGTAGTCGAAGAAGTTGAGCTAATTGGTCTTCGTTGCAGGGAATTCAAAACAATGAGGAGATTAGAAAAGTTGAAAAAGAACACAAGGCTAGGTATGCTCTCTTCATAATTTGATTTGATTTTTGCATACAATTTTGTTTTTATTGTTTTGTTTTGAGAGAAGTAATTGGAAGTTAAAAATTCAGCTCTTTTAAGGTTTCTGTAATGTTAGTTTAGCACTATGTTATTTATTAGTCATTAATACTTGAACTTTGTTTAGTATCCTTCTTTGTAGAGGGTGCAACTGAGCTGTCGACCCTCTGACTTAAAATCTTGTATCTTTGAGAGAGATTAGTACTGCTTTTTTGCTACGAGAATGCCTTTTTTTTATAACCATGGGCCATCTTTTTGCACACCTCCGCTTATTCTAAGAATACCTGTCACCTCCCACCAGCAAGCAGCATGTACTGGATCACTTTGTCCACCAGGGCTAGGATAGATAGGAAGAATCACTAGTGTATTTTGTCTCCGCTGAGAATTGAACCTGAGGACTCATGATTCTCAACCACTTCATTGACCACTAGACCACACCCAAGGGCTTCTGGGAGTTCACTTTTTTCTGCCAATTTTGAAATTCAACATGACATTTCATTTTTTCATACCAAGGTTAATGTGTTCGTTGGATTCTGGCATAATTGCTTAATTTATCTGGTGATCAGAATTGAATTAGTTTGATTGTTAAGTAAGCTATTTACTTTATAGCTCTTAAGGTTTGAATTGTAGAAAGTTACATTTCTGTACAAAATCTTTTTTATTTTAAAGTAAAGCTCCACCGAGATTTGAACTCCTGTTCAAAAGCATCGTGACGGGAGATAAAGGAGAAAGTTAAGAGTTTTTCGTAAATTGAGAAGTAGACAAGTATTATATCACTGTGTTGTCTTAGGCTTGGTATTCAGGTACATGTGTTTTAGTCTAGAAATATATTGTCCTTACAAACTGGTTTGCGCAGTTGGTTTGGAGGATTAAGGATACATGTTAGAGCCTAATCAGTATTAGGTTCAAGGAAATATGAAAGTCCTATTTTCCATGCAGATCCTCTTTAGTTTTTCTCAGAGCCTAATCTCGATGGTAACTTTGATTTGTTCATGGTCCTTTGATCCTGTTATTTATAACATTAAAGATGATCCATTATTGAAGTCCCAAACACTAATGTAAGCTACCTGTAAACTTTTATTCATTTGGGATATTCGTGGAAAATTCGTCATGTTTGATTTGGTGGTTTTTGCGCGGGGATTATAACCTTTAATTGCAAAACATGAGCAACTTATGGTCGTTCCATTATAAGTCATGAAATGACTGCTCTGTTGTAGAGTTGTTCGGGAAAGGAAGGAACGTCGTAGACAATGGGCTCAAAAGTTAACTCCACGACCTAAACAAAATGATGAAAGCATTGAAGACACAAAAGAACCTGAAGATGCCCAAGAGTCAAAGGACAATAGAGGGATGCTGCCTGATGAGATTGTAAAAATTCTTGCAGCTCGTGAAAAGTAAGTTATTTGTTGCATTTCTTGGTTTATTGGTAGTTCCGGTCTTCTCATACTCTTCCCAGTTCTTGAAAAACGGTACTCAATTGTATGCAGGAAAGTTTTCTCGTCAGACTCGGAAGAAGAACATGAGAAGCAGCCTACATCTAAAAACAAAAGATCCAAGAGCTCTGGGTGAGCATCGTGCTCTGTTCTTGTTTAATTAATATAATATTGATAACTCGCTTGTATTTACTCACTGTATGTTTGCCACAGGTCTGGACCAGTTATTTTGAAGGATCTACCACCTCCTCCGTGCTTAGAGAGCTCACTGGCATTCTTGAAGAAACGTAAGATGCAGGTGTCAAGATCATCAGCTGTTCTGAACAATTCCAGTCAAGCATTACGCCTTCTATCTACATCTGGCTTGCTACGTACGAAATGATAGGTGATGATTTTGAAGATTTTAGCCCGAGTGATGTCAATGCTGTATTGCTTGCTGTAATGAGAATATGCTGGTAGAGGTGTTAAATGGCGAGCTGGTTTTGGACACTGATGGGTAAACCAAAAAAACAAAACAAAACATTGTAACAACTTTTTGATGGTATATTGCAATTTTATTGATACTTGTGGGTAGGAACTGCTGAACTGTTTACACTGCAACAGTCTCATCTCAGTCA-AGTGTTGAATCATTAAGTGGCTGCACAA</genome_strand>
        <mrna_strand>CAAAAATTATTTCACAAGTACACTATCCTTTACTTGTGCTCCAAAACCCTAGCCCTAAAACCCTCTGCCAAAGTGAGACACTTTGCTCGAGCGATATGTCGGGAAGAGGAGAAGATAGTGATTCCGATGCGCCGGAAGAACTAACTTCCGTACAG.............................................................................................GGAATTCAAAACAATGAGGAGATTAGAAAAGTTGAAAAAGAACACAAGGCTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTTCGGGAAAGGAAGGAACGTCGTAGACAATGGGCTCAAAAGTTAACTCCACGACCTAAACAAAATGATGAAAGCATTGAAGACACAAAAGAACCTGAAGATGCCCAAGAGTCAAAGGACAATAGAGGGATGCTGCCTGATGAGATTGTAAAAATTCTTGCAGCTCGTGAAAA.............................................................................................GAAAGTTTTCTCGTCAGACTCGGAAGAAGAACATGAGAAGCAGCCTACATCTAAAAACAAAAGATCCAAGAGCTCTGG.................................................................................GTCTGGACCAGTTATTTTGAAGGATCTACCACCTCCTCCGTGCTTAGAGAGCTCACTGGCATTCTTGAAGAAACGTAAGATGCAGGTGTCAAGATCATCAGCTGTTCTGAACAATTCCAGTCAAGCATTACGCCTTCTATCTACATCTGGCTTGCTACGTACGAAATGATAGGTGATGATTTTGAAGATTTTAGCCCGAGTGATGTCAATGCTGTATTGCTTGCTGTAATGAGAATATGCTGGTAGAGGTGTTAAATGGCGAGCTGGTTTTGGACACTGATGGGTAAACCAAAAAAACAAAACAAAACATTGTAACAACTTTTTGATGGTATATTGCAATTTTATTGATACTTGTGGGTAGGAACTGCTGAACTGTTTACACTGCAACAGTCTCATCTCAGTCAGAGTGTTGAATCATTAAGT-TCTGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330581" ref_strand="-" ref_description="SGN-U330581">
      <seq>ctagttctctcaagagcacatcagagcctccggtggattcagaaattccttaacacaaagcaatggtatatctaacacagttggtataattcttctgttggtatatccaatctgggctctggttcttcgagccgtctgatgaactatagctacaacgatcatatgtgtgttttcgtccacgaattcaatgctcaatgctgcaaagcagacctctgaataaatggatttggttttgttttaaacatttctggttatgtgattatgtacttttgacatatgaagtacttatggttgatggatttgattgtaaagttttcactcattcacgcttgcaatctatgaacttggtaaggtgacgattatatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="-" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="70927" stop="69957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70624" g_stop="70273" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="379"/>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="-" ref_id="SGN-U330581" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330581" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70624" e_stop="70273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTCCTCCAAGAGCACATCAGAGCCTCCGGTGGATTCAGAAATTCCTTAACACAAAGCAATGGTATATCTAACACAGTTGGTATAATTCTTCTGTTGGTATATCCAATCTGGGCTCTGGTTCTTCGAGCCGTCTGATGAACTATAGCTACAACGATCATATGTGTGTTTTCGTCCACGAATTCAATGCTCAATGCTGCAAAGCAGACCTCTGAATAAATGGATTTGGTTTTGTTTTAAACATTTCTGGTTATGTGATTATGTACTTTTGACATATGAAGTACTTATGGTTGATGGATTTGATTGTAAAGTTTTCACTCATTCACGCTTGCAATCTATGAACTTGGTAAG</genome_strand>
        <mrna_strand>CTAGTTCTCTCAAGAGCACATCAGAGCCTCCGGTGGATTCAGAAATTCCTTAACACAAAGCAATGGTATATCTAACACAGTTGGTATAATTCTTCTGTTGGTATATCCAATCTGGGCTCTGGTTCTTCGAGCCGTCTGATGAACTATAGCTACAACGATCATATGTGTGTTTTCGTCCACGAATTCAATGCTCAATGCTGCAAAGCAGACCTCTGAATAAATGGATTTGGTTTTGTTTTAAACATTTCTGGTTATGTGATTATGTACTTTTGACATATGAAGTACTTATGGTTGATGGATTTGATTGTAAAGTTTTCACTCATTCACGCTTGCAATCTATGAACTTGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333063" ref_strand="+" ref_description="SGN-U333063">
      <seq>aaaaagcaaatactcgacagactgttgtagagtgcagaatcattcggaatttgttcaataacttttcagatctagtagtagggggttgaaagaaaaatgggtaggatggattatttggctatgaagactgatgaagatactaacaaattgattaatgaagatctgaatgagctaaagttagctgctgagaagctctttgaccatgccactaaacttggcggtcttggatttggtacttctcttctcaaatggtttgcctcatttgctgccatttatttgctgatactggaccggacaaactgaaaaacaaatatgttgactggacttctagtcccatatatcttcttcagtttccctgcagtgttattccacttcttcagaggagaggttgggaaatggattgctttcgttgcagtagtacttaggcttttcttcccacgacattttccagactggttggaaatgcctggttcattaatcctactcctagtggtttcgcccaacatctttgcccacactttcagagacagctggattggcactgcgatatgtcttttgattggctgctatctcctccaagagcacatcagagccttcggtggattcagaaattccttaacacaaagcaatggtatattctacacagtttggataattcttctgttggtatatccaatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="-" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="76191" stop="70208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75891" g_stop="75621" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75620" i_stop="72067" i_length="3554">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72066" g_stop="71959" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="380" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71958" i_stop="71825" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71824" g_stop="71754" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="451" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71753" i_stop="70740" i_length="1014">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70739" g_stop="70508" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="683" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="-" ref_id="SGN-U333063" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75891" e_stop="75621"/>
          <exon e_start="72066" e_stop="71959"/>
          <exon e_start="71824" e_stop="71754"/>
          <exon e_start="70739" e_stop="70508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCAAATACTCGACAGACTGTTGTAGAGTGCAGAATCATTCGGAATTTGTTCAATAACTTTTCAGATCTAGTAGTA-GGGGTTGAAAGAAAAATGGGTAGGATGGATTATTTGGCTATGAAGACTGATGAAGATACTAACAAATTGATTAATGAAGATCTGAATGAGCTAAAGTTAGCTGCTGAGAAGCTCTTTGACCATGCCACTAAACTTGGCGGTCTTGGATTTGGTACTTCTCTTCTCAAATGGTTTGCCTCATTTGCTGCCATGTAATGTCCCTTTTCCTCTTTTATTTTAAACGAATCTTATTTTACTTTCTCTCTATATCTATTACAATGTGGAAACTGAGAAAGGGACTTTTGACCTGGAATAGCTTGATATTGTCTCCTTTTGATTTTGATGTTTTCAATTTCAAAAATTGAAAAGTGATAACACCATTAAGTTTTATTTAGACACTCGAACTATTGATTTGAGCACCTGAACGTATTCCAATTAGATACTTTTGGTTCAAATTTTGGAAAAAAGTAAATATATATTATCTCCGTTAGTTAGCATTTGTTTCGATAAGCCCATAAGCCTCCAGAATTTTCTAGTTAAGGTTGATCTTCATAATTAAAGAAGATGAAAGTAATTTATGTGGTTAACTTAATTAGCTAATAGGTCTTGAGATGTGAAATGTTTCCAGGGTTAAACAAGACTTCTCTATAAAAGAAGAAATAGGAACAACAAAATATAATTACTACGAAACCAGCAAGATAGGAAAATGGCTTTTAAGCTATAAAGTTGATTTTTTGGTTCTGGTTTTCTCTGTGAACTCTTCCGCTCAATTTATGAGAGGCTTTGAAATGAGAAAGTGAGATACTAATATGAGATAACATTGCATTGTCATGTGAATGGCCTAAGGCCATCATGTGATGCCAATTTTTGGCAGTAAGACTTGGTCTTAGGCCATTCACATTAGCGATAATGTTATTATGTGGCTTCACATGTCATCTCATATTAGGATTAAACAAGATTTGCCTTGAGAGATATCTCCTTAGCTTTGAAGTCAATGATGAAGTTTTGTCTATTTTAAAAGCTAAGCCTTGTAATATGAGCTTGTAACCTAAGTGGGGGTAACAACGTGGTGGAATGTTGGGATAATCTTGATGGTTGGGCTTGTGGGCTATTCTCTGACCTGTCCTATCCAAGCACAGAGTTGGGCTACGCGGTCCAAATGAAAGTATGGGCTGTTTGGCTATTAGAGTAGGGTGAATTGAGTGAGACTGGTTTCACTGTGCAACGAATAGTCCTCGCTTTGTGCAGTGTTAAGGATAATGAGCTGGTGCTTTCTAATCTCAATTTTTTTTTTTTTTGAAAATATATCTATTTTCAAAGGATTTCTTGTTGTCAAAGGTTCACATCACGTGATGACCTTAGAAAGTTCACACGTAATGACAATGTAATCACATGACTTCACATGTTATCTCATATTAGTATTCTATTTTCTCATTTCAAAAGCCTCCTATATACTCTAGCAAAAGAGTTCACAGAGAAAAAAACAGAATGACTTCTACTACAAATTAACAAGATTGGAAAATGACTTTTAAGCTACTGAGTTGATTTCTTGGTTCTGCTTTTTCTCTGAGAACTCTTAAAGAAGAGATATACGAGGGTTTTGAAATGAGAGATTGGGATACTAATATGTTAGATAACATGTAAAGCTATGTGATTACATTGTCACTGCATGTGAATGGCCCAAGGCCATCACGTGATGCCAACCTTTGGCATCAACTAATCCTTTTAAAATAGATATATTATCAACAGTTTAATCACTTCCGACTCATGAGACTGAAGTTGAGAATTGCTCATCTAAAGTTGAAAAAGTTTATCCCAAAAGATCTGAAGTTGGGGACTGGGAAGCCTAACTTCATTACCCAAAATGTCTGAAATTAGCGATTGGATGGGATAATGCCTGCACCATAATAGTATGTTTTAATCCCTCCAGTTTCAATGTTTGGGAGTGGGATTGGCGTGGATTTAATCATCTTAGATGTCCCTTTTCAGTTTGTTAGTCAGTAGCTTGTAACATTTTGATCTGTTAGCCAACGTTGCTGTTGAACTCAGAAGTTTTCAGTGCTGAAACTTATTGGTGGGAATTTGGCTGGTGAGTTGCTTCATCAATGACAATAAATCTGATTCTAGGGACTATTGGAGGTTGGGGTTGTCCTATCCTTGAGAAATTTGACATTATCGTTGATCTTTAGTTATCCCCATGAGCAATTGAAATCGTCAGTTCACTGCTAATTACTCATCAAATATACCTAATGAATAGGGAAGAGAAATGCACTCAAATCTGCTGCTAGTTTTAAATTTCTACTCTGAGTGAAGGACAAGTGACATTAAGTCTACAGTAATGTGGTACACCAACTTATTCAGTTACCAATCACCCACAAGGCATGACTTGGTTGAAAAATGCATCATATTAGCAAAGCTCATGAAGTTGTAGCAAATTGGAAAGTAGAGGCTTTTAACCCGGAAATAGATTAGGCATATTCCACTGTTATTATCAGGATATGAAAATTGCTCCCGCAAAATTAATGTGTTGAATTTTCTTGGCTGAGACTTGAGTGTCCTGCATTGGCAAACCAACAACAATGCTAATCCACAGAGGAAGATTAAATCCTAGATAATAAGACATGTTGGAATGCCTTATTGACACATTTGCTGTGGAATGTTTATTAACAAGTAGGAGCGGAAAGAAGTTTTCACTCTGCCAAAAAAGTATGTCTATTGTTTTGCGGTTGATCATACATATGTTTAAATATTTGTACTTAACTCTGGCTGGAAGAAACTTGCTGTACAATATTAGTATCCATATTTCAACTCGATGGTCTTTTTGAACTTGTTACATCTTGAGCTGAGTTTCAGCAATGTGGAATATCGTCTTTTTCCTGATTTTTGGGGGTCATCCTGTTTAGCTGATCTAATTTGGTATTAATCTTGACGTTGTATCCATAATCGTTCAAATTCAATGTTTTGCTTAATCCTGTACCAATCTTCTTTCCTTTCAAGTTTCAACATAGTTAATACCAACTCATCACCTATAGATTTTCCTTAGAGTAAGGTTGTGAGTCTTCTTCTTTCCTCCTATTTTTGTTTCCTTTATGTTGTATCTTCCATTTAGATCCCAGAGAAGTAATCTACTTTGACTACACATGATGAAGTCCAAGAGAATCGTTATCTATTTAAATAAGATGAGACATCCCAAGCGTTGACAATATTTCTTGACAAACTTTTCATCCTAAATATAACCACTCTGCATCAGAAAATCTTATCTCCGGTCTCCTTCCAAATGCAATAGAGAAGTCTTAAGACTTTCTCTTGACCATCTTAGTAGGTGCTGGCGAACTCCAAATCTTAACTGCAAATCTTGAATTCACCTTTACGTGCATATGGAGTCATTTGTTTTTTTGAAGCAGTTTAACATGCCATAACATTGCAATATCAGTCCAGTTAATTTAAGTATGCCCAGAGGAAGACATTAGGAAATTCAGTGTAAAAAGCTAACCCACCCTCATACATGATATTGTGTAAAACCTCTAGAGAACATGACATGACGGGAATATTGTTTTAAGCTTTTAGATGAAACAATTGAATAAGTATATTCTGATGTTGTTGAGGGAGCTGGTGAAATATAACTCATCTTGGTGGAATGTGCTCAGTTGGCTGGTTGCAAGTAATTTTAAATGCTTTTAGTCAAAGAGGTTTGTTTAGAATCTAGAGTTTACACCTTTTTCCTGATGGATTTTTTGATAACGGTTCGAGCAAATATCATCTGCAGTTATTTGCTGATACTGGACCGGACAAACTGGAAAACAAATATGTTGACTGGACTTCTAGTCCCATATATCTTCTTCAGTTTCCCTGCAGTGTTATTCCACTTCTTCAGGTAAACTTCTCTTGTTTGCTACTATTAAGTTTTCCTTGCTTCTTGTCATCCAAGATGTTCTCTTATCACTTGTTGCTACCTGATTCAAAGAGGTTTCTTTTCTTTGTTAATCAATTGTCGTTTTTGATCACCAGAGGAGAGGTTGGGAAATGGATTGCTTTCGTTGCAGTAGTACTTAGGCTTTTCTTCCCACGACATTTTCCAGGTATGAACATTAGCTTTTAATTTATATGATGAAAATAACCTATTGGTTATCATTTTCATTTTTGTGCAATTAAGTTCTTTTGTTTGTAATCCAAGATTCTGTTACCTTTTCCGTTAACTTTTTCTTAATATTAAAAAAAAATTAAATACAACTGGGCACACTTTCCAGCAAGTAATATGCTCCCCAATTATTACCATGACATGTCATGGTTCATGGAAGAGATATCTCTAAATTTTTCAAGCTGCATAGATATTCAACTTAAAAAGTTTCTTCGAGTATACTTATTGAAACTCGGAGCTTCACATAGTGATGAAATACTGAAGATGTTGCAGCATTGCCAACTGAGAAGTGTCACTAGGATTAGCTATTGTGATTTTGCTTTCTTCGGTAGACTCTTTTATATTTATTCTGATGGTAAAACACGATTTGCGTATAGTGATAATATCTTCACTCCCTGGAGCTCTCATGATGAACTTAATGTAGTTTGCTCCAAGAAATCTATTACACCCTTAGACTTAATAATAGATGGTGGAAAGATCTATTTACACCCTTAGACTTAATCATATATGGTGGAAAGACTAGCAAGACTATGGCCCGGTGGTTGGTGGTTGGGAAGGGCAAACGTTACTCGATGGATTAGTTAATGTGTGTGCAAGCCGGCTCGTATACTGTTCTTCTAAAAAATACACACATTGACACACACATGGTTGATGCGTGTGCAAGCTGGCTCGTATACTACCTAACACCCAGCCAGAACTGATGTGGGAGAAATAACATCCTTGCACGCCACTCTGATACCATGAACTCAACCTCAAAATCTAGATTCATGACGGATGGATTGCTCAAGACTATAAAAAGAGATCAAACACCCATCCACAACCAATGTGGGAGAATCAACACTAAATCTTAATCCTAAATTTGCCTATCTACTTAAGTTACGCTACTAATGCTTGCTCTATGGTTCTTTTATATATGCTAATCCTCCTTTATAATGCTGTTGTCCATGAAATATAGACTGGTTGGAAATGCCTGGTTCATTAATCCTACTCCTAGTGGTTTCGCCCAACATCTTTGCCCACACTTTCAGAGACAGCTGGATTGGCACTGCGATATGTCTTTTGATTGGCTGCTATCTCCTCCAAGAGCACATCAGAGCCTCCGGTGGATTCAGAAATTCCTTAACACAAAGCAATGGTATATCTAACACAGTTGGTATAATTCTTCTGTTGGTATATCCAATCTGGGC</genome_strand>
        <mrna_strand>AAAAAGCAAATACTCGACAGACTGTTGTAGAGTGCAGAATCATTCGGAATTTGTTCAATAACTTTTCAGATCTAGTAGTAGGGGGTTGAAAGAAAAATGGGTAGGATGGATTATTTGGCTATGAAGACTGATGAAGATACTAACAAATTGATTAATGAAGATCTGAATGAGCTAAAGTTAGCTGCTGAGAAGCTCTTTGACCATGCCACTAAACTTGGCGGTCTTGGATTTGGTACTTCTCTTCTCAAATGGTTTGCCTCATTTGCTGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGCTGATACTGGACCGGACAAACTGAAAAACAAATATGTTGACTGGACTTCTAGTCCCATATATCTTCTTCAGTTTCCCTGCAGTGTTATTCCACTTCTTCAG......................................................................................................................................AGGAGAGGTTGGGAAATGGATTGCTTTCGTTGCAGTAGTACTTAGGCTTTTCTTCCCACGACATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAAATGCCTGGTTCATTAATCCTACTCCTAGTGGTTTCGCCCAACATCTTTGCCCACACTTTCAGAGACAGCTGGATTGGCACTGCGATATGTCTTTTGATTGGCTGCTATCTCCTCCAAGAGCACATCAGAGCCTTCGGTGGATTCAGAAATTCCTTAACACAAAGCAATGGTATATTCTACACAGTTTGGATAATTCTTCTGTTGGTATATCCAATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312530" ref_strand="+" ref_description="SGN-U312530">
      <seq>gcacgagggaacacaagacatttgatcaacaaaaaaaggggtaaaattatggctgcctctctacaagcagctgctactcttatgcaaccgacaaaggttggtgttagaaacaacctgcagttgaggtctgctcaaagtgtgagcaaagcatttggtgttgaacaaggttcaggcaggcttacttgctctttgcaaactgaaatcaaggaattggctcagaaatgtactgatgctgccaagattgctggttttgctcttgccacctctgccctcgtcgtctcgggagcaaatgcggaaggagttccaaaacgtttaacctatgatgaaatccaaaaaaaccaagctcatgacacgcttaacctacactcttgatgagattgagggaccatttgaagtgtctccggatggcactgttaagtttgaggagaaggatggaattgattatgctgctgttacagttcagcttcctggtggtgagcgtgtgcccttcctcttcactatcaaacagcttgtggcaagcggcaagccagaaagctttagtggtgagttccttgtgccatcatacagaggttcatccttccttgacccaaagggacgaagtggatctactggctatgacaacgctgttgcattgcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="81080" stop="83499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81381" g_stop="81664" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81665" i_stop="82659" i_length="995">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82660" g_stop="82711" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="334" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82712" i_stop="82893" i_length="182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82894" g_stop="83199" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="640" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U312530" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81381" e_stop="81664"/>
          <exon e_start="82660" e_stop="82711"/>
          <exon e_start="82894" e_stop="83199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGAGGAACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCGGTAAGTTGCTTTTCTAATTCAATGCTTGCCTGCTTCATGTCTATATTTCCCATGTATCCAGTGCTGTTGCCTGCATAATACAGAGTCATATAATTCAACTAGGATCTTTCTAAACAAGTCCATCATATTATGTATACAATTCAACATGCCAGATATTAAACAACTAACGATTAGAAATACAAGACAAACCAATGAAAAATGTCGTGAGATCCCCCGCGCTGCAGGGGTGTATCTGCTGACTAGTTTAGATCACGAGGAGGCACAAAAGCAAGAAAGCCACTTTTAAGCTATGAATGGATCAGTACTGTGAATAGGATAGGATGAAAGAGGAATTCCATTCATTATATGAACTGCCATATCCCTCTATTGTGTATGAAGTTTATGGTTTCCTTTGGTGTCAATCCAATCATCTAAATTTAGGATAATAAGAAAGGCTATAACTGGACTAGAGATGAATGCTAACTAACCAGTATGACATACCGATAATTCTAAAAGCAGGTAAAATGTTCTTCAAGCTAGTCGGCCTCATATTCACTGTCAATCACTTTCTTTGAAGTAACCATAACTAGTAAACTACCAAATATCTTTATCAGGAATAGAGGGCCTTGATATCTTTGAGAGTACGTAAAAATACTTCAGAAGGCTTCTTTACCATTGCCACCTCCAAAACTAAGATCAGACTATCCAATCTTTTGTCAAAATTTCCTAGCTCATTTCTGGATGTTCATGCTATCATCTGTATTTCAGGACAAGCATCAATAGTTCTATAAAGATGAACTAGTTTGCAGATTCTGTCATACATACTGGTATATATAAAATCTAACTTCCAGACATACTTTTATTTGGTATGATGATGACATGAGTTGAGCTTATATGGAGAAGCATAGTCAATGAGAATTCATATAGCCGACCCCAACTTTTGGACTGAGGTGTAGTAGTTGTTGTTCTTGTTTCTCATGCAAAAATTTCTAATGTTTGTACACTTGGATACACAGGGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTGCCTTCAAACCAGGCAAATACACTGCCAAGAAATTCTGCCTAGAGCCCACATCATTCACAGTCAAGGCAGAGGGTGTCAGCAAGAACTCAGCCCCAGACTTCCAAAAAACCAAGCTCATGACACGCTTAACCTACACTCTTGATGAGATTGAGGGACCATTTGAAGTGTCTCCGGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAGTTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGAGGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTGCT</genome_strand>
        <mrna_strand>GCAC-GAG-GGAACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAA......................................................................................................................................................................................AAAACCAAGCTCATGACACGCTTAACCTACACTCTTGATGAGATTGAGGGACCATTTGAAGTGTCTCCGGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAGTTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGAAGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333630" ref_strand="+" ref_description="SGN-U333630">
      <seq>tcttaaagctggagcctcaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggatttcggcacgaggcagagagtaaccagacatttgatcaacaaaaaaaggggtaaaattatggctgcctctctacaagcagctgctactcttatgcaaccgacaaaggttggtgttagaaacaacctgcagttgaggtctgctcaaagtgtgagcaaagcatttggtgttgaacaaggttcaggcaggcttacttgctctttgcaaactgaaatcaaggaattggctcagaaatgtactgatgctgccaagattgctggttttgctcttgccacctctgccctcgtcgtctcgggagcaaatgcggaaggagttccaaaacgtttaacctatgatgaaatccaaagtaagacatatatggaagtaaagggaactggaactgctaaccaatgtcctaccattgaaggaggtgttggcagctttgccttcaaaccaggcaaatacactgccaagaaattctgcctagagcccacatcattcacagtcaaggcagaagggtgtcagcaagaactcagccccagacttccaaaaaaccaagctcatgacacgcttaacctacactcttantgagcgtgtgcccttcctcttcactatcaaacagcttgtggcaagcggcaagccagaaagctttagtgggtgagttccttgtgccatcatacagaggttcatccttccttgacccaagggacgagggtggatctactggctatgacaacgctgntgcattgcctgctgnaggnagagnagacnnaggagagcttcagaaggagaacgtaaagacactgcatctttacagggaagacacctttgagtgttacccagagcagccaaagactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="81077" stop="83606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81385" g_stop="81664" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="359" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81665" i_stop="82659" i_length="995">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82660" g_stop="82935" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="636" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82936" i_stop="83037" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83038" g_stop="83306" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="903" r_length="267" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U333630" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81385" e_stop="81664"/>
          <exon e_start="82660" e_stop="82935"/>
          <exon e_start="83038" e_stop="83306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGAACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCGGTAAGTTGCTTTTCTAATTCAATGCTTGCCTGCTTCATGTCTATATTTCCCATGTATCCAGTGCTGTTGCCTGCATAATACAGAGTCATATAATTCAACTAGGATCTTTCTAAACAAGTCCATCATATTATGTATACAATTCAACATGCCAGATATTAAACAACTAACGATTAGAAATACAAGACAAACCAATGAAAAATGTCGTGAGATCCCCCGCGCTGCAGGGGTGTATCTGCTGACTAGTTTAGATCACGAGGAGGCACAAAAGCAAGAAAGCCACTTTTAAGCTATGAATGGATCAGTACTGTGAATAGGATAGGATGAAAGAGGAATTCCATTCATTATATGAACTGCCATATCCCTCTATTGTGTATGAAGTTTATGGTTTCCTTTGGTGTCAATCCAATCATCTAAATTTAGGATAATAAGAAAGGCTATAACTGGACTAGAGATGAATGCTAACTAACCAGTATGACATACCGATAATTCTAAAAGCAGGTAAAATGTTCTTCAAGCTAGTCGGCCTCATATTCACTGTCAATCACTTTCTTTGAAGTAACCATAACTAGTAAACTACCAAATATCTTTATCAGGAATAGAGGGCCTTGATATCTTTGAGAGTACGTAAAAATACTTCAGAAGGCTTCTTTACCATTGCCACCTCCAAAACTAAGATCAGACTATCCAATCTTTTGTCAAAATTTCCTAGCTCATTTCTGGATGTTCATGCTATCATCTGTATTTCAGGACAAGCATCAATAGTTCTATAAAGATGAACTAGTTTGCAGATTCTGTCATACATACTGGTATATATAAAATCTAACTTCCAGACATACTTTTATTTGGTATGATGATGACATGAGTTGAGCTTATATGGAGAAGCATAGTCAATGAGAATTCATATAGCCGACCCCAACTTTTGGACTGAGGTGTAGTAGTTGTTGTTCTTGTTTCTCATGCAAAAATTTCTAATGTTTGTACACTTGGATACACAGGGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTGCCTTCAAACCAGGCAAATACACTGCCAAGAAATTCTGCCTAGAGCCCACATCATTCACAGTCAAGGCAG-AGGGTGTCAGCAAGAACTCAGCCCCAGACTTCCAAAAAACCAAGCTCATGACACGCTTAACCTACACTCTTGATGAGATTGAGGGACCATTTGAAGTGTCTCCGGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAGTTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGT-GGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGA-GGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTGCTGGAGGGAGAGGAGAC-GAGGAGGAGCTTCAGAAGGAGAACGTAAAGAACACTGCATCTTTAACAGGAAAGATCACCTTGAGTGTTACCCAGAGCAAGCCAGAGACTGG</genome_strand>
        <mrna_strand>AGAGAGTAAC-C-AGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTGCCTTCAAACCAGGCAAATACACTGCCAAGAAATTCTGCCTAGAGCCCACATCATTCACAGTCAAGGCAGAAGGGTGTCAGCAAGAACTCAGCCCCAGACTTCCAAAAAACCAAGCTCATGACACGCTTAACCTACACTCTTANTGAG......................................................................................................CGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCC-AAGGGACGAGGGTGGATCTACTGGCTATGACAACGCTGNTGCATTGCCTGCTGNAGGNAGAGNAGACNNAGGA-GAGCTTCAGAAGGAGAACGTAAAG-ACACTGCATCTTT-ACAGGGAAGACACCTTTGAGTGTTACCCAGAGC-AGCCAAAGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333633" ref_strand="+" ref_description="SGN-U333633">
      <seq>ctggagctccccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcggcacgagctaagctgataatactatgaataaggttcttttcatttttctccaatgaaaatagaagtctgcagatatcatccactgtgaccatgcttgcgggtgcaactaacaatttagaatttttctctggcacaagctccatgagatatactcatcacaaaggttctacgtcctatccctgtatgcaaaaatgtaacaattttcttctaaccacttttaggcaccctattatatgtctgaaggttttcctttcagagcggtgaagtcctaagctagagaagaaaggttctagtgccaggatgatacctgggactagaataccaattctatatgtttggaaggcaatattgaaaacaataagatgattattacttcattggagcttaccggggttaaatgaacccaacgaagagcaacagcactggatacatgggaaatatagacatgaagcaggcgagcattgaattacaaaagcaacttaccgagactacgagggcagaagtggcaagagcaaaaccagcaatcttggcagcatcagtacatttctgagccaattccttgatttcagtttgcaaagagcaagtaagcctgcctgaagcttgttcaacaccaaatgctttgctcacactttgagcagacctcaactgcaggctgtttctaacaccaacctatgtctgatgcataagactagcagctgcttgtagagaggcagccataattttacccctatcttttgtgatcaaatgtcatgtagtcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="-" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="84632" stop="81088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84329" g_stop="83924" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="476" r_length="406" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83923" i_stop="81735" i_length="2189">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81734" g_stop="81387" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="824" r_length="348" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="-" ref_id="SGN-U333633" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84329" e_stop="83924"/>
          <exon e_start="81734" e_stop="81387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTGATAATACTATGAAGAAGGTTCTTTTCATTTTTCTCCAAGGAAAATAGAAGTCTGCAGATATCATCCACTGTGACCATGCTTGCGGGTGCAACTAACAATTTAGAATTTTTCGCTGGCACAAGCTCCATGAGATATACTCAGCACAAAGGTTCTACGTCCTATCCCTGTATGCAAAAATGTAACAATTTTCTTCTAACCACTTTTAGGCACCCTATTATATGTCTGAAGGTTTTCCTTTCAGAGCGGTGAAGTCCTAAGCTAGAGAAGAAAGGTTCTAGTGCCAGGTTGATACCTGGGACTAGAATACGAATTCTATATGTTTGGAAGTCAATATTGAAAACAATAAGATGATTATTACTTCATTGGAGCTTAGCGGGGTTAAGTGAACCCAAGGAAGAGTAAGCATTTATATTGGCTCCTTTGTTCATTTCTCTTGATCAAGTGATTTCTCTCCATCTGTCTGTCCGTTTCTACTGTAGTTGCAAATTTCATCTGCTTTACCCTTGCATGATCTATGATGAACACTCAGTTGTTTGTTACTTAGTAGATATATACTGGTAAGGACCAGCCTTTCCGTGGTGTAAAATCTATTAATAAAAATACTTGATTGAGCTTACCTTTGCTGAACATATTCACTAATTTTGATGATTGTGGAGTCTAAGGGGTATGGATTATCATGAATTTGCTCCTTTCTATGATGACAGTACTTTTTACTTTATCCTGGGTGTATACAAGCATTAGAAGTGTTTATAACTGGCTACCAGCATGAAATATTACTTGAGCTTGATAATATACAGCAAGATAGTTGTTTCAGTGCTTGTCCAAATTGGGTCACAGAATGTTTAACCTTGTAACTTACAACAAAATTTAGACCAAGAAATGATACACACATTCTAGAACTCTCCATCATTCAAGTTGGGCATACCAGATACCCTGGATTTTGACATCCTTGGGAACCTTTGCCCCCAGATCAGTATCAGATGGCTGGATGCTCTCAAATACTCCAATGACCTCACCAGTCTCTGGCTTGCTCTGGGTAACACTCAAGGTGATCTTTCCTGTTAAAGATGCAGTGTTCTTTACGTTCTCCTTCTGAAGCTCCTCCTCGTCTCCTCTCCCTCCAGCAGGCAATGCAACAGCGTTGTCATAGCCAGTAGATCCACCTCGTCCCTTTGGGTCAAGGAAGGATGAACCTCTGTATGATGGCACAAGGAACTCACCACTAAAGCTTTCTGGCTTGCCGCTTGCCACAAGCTGTTTGATAGTGAAGAGGAAGGGCACACGCTCACCACCAGGAAGCTGAACTGTAACAGCAGCATAATCAATTCCATCCTTCTCCTCAAACTTAACAGTGCCATCCGGAGACACTTCAAATGGTCCCTCAATCTCATCAAGAGTGTAGGTTAAGCGTGTCATGAGCTTGGTTTTTTGGAAGTCTGGGGCTGAGTTCTTGCTGACACCCTCTGCCTTGACTGTGAATGATGTGGGCTCTAGGCAGAATTTCTTGGCAGTGTATTTGCCTGGTTTGAAGGCAAAGCTGCCAACACCTCCTTCAATGGTAGGACATTGGTTAGCAGTTCCAGTTCCCTTTACTTCCATATATGTCTTACTTTGGATTTCATCATAGGTTAAACGTTTTGGAACTCCTTCCGCATTTGCTCCCTGTGTATCCAAGTGTACAAACATTAGAAATTTTTGCATGAGAAACAAGAACAACAACTACTACACCTCAGTCCAAAAGTTGGGGTCGGCTATATGAATTCTCATTGACTATGCTTCTCCATATAAGCTCAACTCATGTCATCATCATACCAAATAAAAGTATGTCTGGAAGTTAGATTTTATATATACCAGTATGTATGACAGAATCTGCAAACTAGTTCATCTTTATAGAACTATTGATGCTTGTCCTGAAATACAGATGATAGCATGAACATCCAGAAATGAGCTAGGAAATTTTGACAAAAGATTGGATAGTCTGATCTTAGTTTTGGAGGTGGCAATGGTAAAGAAGCCTTCTGAAGTATTTTTACGTACTCTCAAAGATATCAAGGCCCTCTATTCCTGATAAAGATATTTGGTAGTTTACTAGTTATGGTTACTTCAAAGAAAGTGATTGACAGTGAATATGAGGCCGACTAGCTTGAAGAACATTTTACCTGCTTTTAGAATTATCGGTATGTCATACTGGTTAGTTAGCATTCATCTCTAGTCCAGTTATAGCCTTTCTTATTATCCTAAATTTAGATGATTGGATTGACACCAAAGGAAACCATAAACTTCATACACAATAGAGGGATATGGCAGTTCATATAATGAATGGAATTCCTCTTTCATCCTATCCTATTCACAGTACTGATCCATTCATAGCTTAAAAGTGGCTTTCTTGCTTTTGTGCCTCCTCGTGATCTAAACTAGTCAGCAGATACACCCCTGCAGCGCGGGGGATCTCACGACATTTTTCATTGGTTTGTCTTGTATTTCTAATCGTTAGTTGTTTAATATCTGGCATGTTGAATTGTATACATAATATGATGGACTTGTTTAGAAAGATCCTAGTTGAATTATATGACTCTGTATTATGCAGGCAACAGCACTGGATACATGGGAAATATAGACATGAAGCAGGCAAGCATTGAATTAGAAAAGCAACTTACCGAGACGACGAGGGCAGAGGTGGCAAGAGCAAAACCAGCAATCTTGGCAGCATCAGTACATTTCTGAGCCAATTCCTTGATTTCAGTTTGCAAAGAGCAAGTAAGCCTGCCTGAACCTTGTTCAACACCAAATGCTTTGCTCACACTTTGAGCAGACCTCAACTGCAGGTTGTTTCTAACACCAACCTTTGTCGGTTGCATAAGAGTAGCAGCTGCTTGTAGAGAGGCAGCCATAATTTTACCCCTTTTTTTGTTGATCAAATGTCTTGTGTTCCTCT</genome_strand>
        <mrna_strand>CTAAGCTGATAATACTATGAATAAGGTTCTTTTCATTTTTCTCCAATGAAAATAGAAGTCTGCAGATATCATCCACTGTGACCATGCTTGCGGGTGCAACTAACAATTTAGAATTTTTCTCTGGCACAAGCTCCATGAGATATACTCATCACAAAGGTTCTACGTCCTATCCCTGTATGCAAAAATGTAACAATTTTCTTCTAACCACTTTTAGGCACCCTATTATATGTCTGAAGGTTTTCCTTTCAGAGCGGTGAAGTCCTAAGCTAGAGAAGAAAGGTTCTAGTGCCAGGATGATACCTGGGACTAGAATACCAATTCTATATGTTTGGAAGGCAATATTGAAAACAATAAGATGATTATTACTTCATTGGAGCTTACCGGGGTTAAATGAACCCAACGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCACTGGATACATGGGAAATATAGACATGAAGCAGGCGAGCATTGAATTACAAAAGCAACTTACCGAGACTACGAGGGCAGAAGTGGCAAGAGCAAAACCAGCAATCTTGGCAGCATCAGTACATTTCTGAGCCAATTCCTTGATTTCAGTTTGCAAAGAGCAAGTAAGCCTGCCTGAAGCTTGTTCAACACCAAATGCTTTGCTCACACTTTGAGCAGACCTCAACTGCAGGCTGTTTCTAACACCAACCTATGTCTGATGCATAAGACTAGCAGCTGCTTGTAGAGAGGCAGCCATAATTTTACCCCTATCTTTTGTGATCAAATGTCATGTAGTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScW8FO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344432" ref_strand="+" ref_description="SGN-U344432">
      <seq>cggacccccgggctgcaggaattcggcacgaggtccattcactccgtttcaaacaaaaaaaaactgcacattattgattgagttgcagaattctgacaaacacaacaaggtaaatcgctctgtggcgtgctactgatgaaatggataaacagccgggggctatggggacgagtgctggtttagctttgcgattaggacaggctattttctctgtcagttcacttcttttcatgtgttttggtgtttctttcttaagctacagctacgctcccttctggtacttgaatttttttttttttttttaatttcatctcttttcactattcatctctttttttcttcttcctcgaggtaatttatttctgattgttgctgtttaaatctttgaatttggtgggctcttgaaattggcatgtaagtgagatgagtggattgaaaagattgagcagccgattgtaaggaaactaaacttgaattaggccttagcatgagtacttttcatttgtcttagcatcggtggatagagttatctgatataaattagttgagggctaacccggagtaccggacaccatgatcatcaaataaagaaaaaccaaaatctttccactttgaactgttaggcacttttgaaattaccacgtgattgtccagtagagagctttcattgaccttttaaaggtgtaaataaaaagaacttcacaagagagttgtgaagttcattttcagtatggagtctggaagaaatggtcaaatgcacataaaagaagcttatatgttggatattatgccttgggttattttattggagtaattaattggttgttgccgatttggatacctaattgagggttaaatttgaccattggtcacagggtcctattggctggctttctatacttgagaaacttgaaacgatatcagattttctctgtactgtatcctgaaattttgccagaagactgccattgggaaaggcctatttgagatttttcctgcctggaatcctctatgcagttgtcttccccattgggattttatcctgacaccagttgttatggggaaaacccccaatttgttgttatgttttttgaaacgcccaattgagagatttatattaaatttgaattcggcccctaagggccccattaagggagaatatgtctcctccctcatttttctcttttctaagagtgtgatctggaccccctattatagggtgaagggaaaattctctttgccactcacgttcttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ISFsH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0163K16.1" temp_strand="+" temp_description="C02HBa0163K16.1  submitted_to_sgn_as:C02HBa0163K16 len=126229 date=060215">
        <position start="88492" stop="90009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88792" g_stop="89927" g_length="1136"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="1172" r_length="1139" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0163K16.1" gen_strand="+" ref_id="SGN-U344432" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1136</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0163K16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88792" e_stop="89927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTCACTCCGTTTCAAAACAAAAAAAAACTGCACATTATTGATTGAGTTGCAGAATTCTGACAAACACAACAAGGTAAATCGCTCTGTGGCGTGCTACTGATGAAATGGATAAACAGCCGGGGGCTATGGGGACGAGTGCTGGTTTAGCTTTGCGATTAGGACAGGCTATTTTCTCTGTCAGTTCACTTCTTTTCATGTGTTTTGGTGTTTCTTTCTTAAGCTACAGCTACGCTCCCTTCTGGTACTTGAATTTTTTTATTTTTTTTTTAATTTCATCTCTTTTCACTATTCATCTCTTTTTTTCTTCTTCCTCGAGGTAATTTATTTCTGATTGTTGCTGTTTAAATCTTTGAATTTGGTGGGCTCTTGAAATTGGCATGTAAGTGAGATGAGTGGATTGAAAAGATTGAGCAGCCGATTGTAAGGAAACTAAACTTGAATTAGGCCTTAGCATGAGTACTTTTCATTTGTCTTAGCATCGGTGGATAGAGTTATCTGATATAAATTAGTTGAGGGCTAACCCGGAGTACCGGACACCATGATCATCAAATAAAGAAAAACCAAAATCTTTCCACTTTGAACTGTTAGGCACTTTTGAAATTACCACGTGATTGTCCAGTAGAGAGCTTTCATTGACCTTTTAAAGGTGTAAATAAAAAGAACTTCACAAGAGAGTTGTGAAGTTCATTTTCAGTATGGAGTCTGGAAGAAATGGTCAAATGCACAT-AAAGAAGCTTATATGTTGGATA-TATG-CTTGGGTTATTTTATTGGAGTAGTTAATTGGTTGTTGCGGATTTGGATACATAATTGA-GGTTAGATATGACCATT-GTCAACAGGTCCTATT-GCATGCTTTCTATACTTGAG-AACTTGAAACAGATATCAGATTTTCTCTGTACTGTATCCAGAGTTTTGTCGTGAAAGCTGCCATTGGGAAGTGCTTAGTTGAGATTTATGCTGCCTGGAATCATCTATGCAGTTGTCATACCAATTGGAGTATTATACTGAAACGAGTTGTTAGTGGGATATATCTCACATTTGTAGTTATGTTTTTGTATAGCCTCAATTG-GAGTATTATATATAATTTGAATTTGGCCTGCATAGGGCCCATTAAAGGAGGAAATGCTCTCTACCA</genome_strand>
        <mrna_strand>TCCATTCACTCCGTTTC-AAACAAAAAAAAACTGCACATTATTGATTGAGTTGCAGAATTCTGACAAACACAACAAGGTAAATCGCTCTGTGGCGTGCTACTGATGAAATGGATAAACAGCCGGGGGCTATGGGGACGAGTGCTGGTTTAGCTTTGCGATTAGGACAGGCTATTTTCTCTGTCAGTTCACTTCTTTTCATGTGTTTTGGTGTTTCTTTCTTAAGCTACAGCTACGCTCCCTTCTGGTACTTGAATTTTTTT-TTTTTTTTTTAATTTCATCTCTTTTCACTATTCATCTCTTTTTTTCTTCTTCCTCGAGGTAATTTATTTCTGATTGTTGCTGTTTAAATCTTTGAATTTGGTGGGCTCTTGAAATTGGCATGTAAGTGAGATGAGTGGATTGAAAAGATTGAGCAGCCGATTGTAAGGAAACTAAACTTGAATTAGGCCTTAGCATGAGTACTTTTCATTTGTCTTAGCATCGGTGGATAGAGTTATCTGATATAAATTAGTTGAGGGCTAACCCGGAGTACCGGACACCATGATCATCAAATAAAGAAAAACCAAAATCTTTCCACTTTGAACTGTTAGGCACTTTTGAAATTACCACGTGATTGTCCAGTAGAGAGCTTTCATTGACCTTTTAAAGGTGTAAATAAAAAGAACTTCACAAGAGAGTTGTGAAGTTCATTTTCAGTATGGAGTCTGGAAGAAATGGTCAAATGCACATAAAAGAAGCTTATATGTTGGATATTATGCCTTGGGTTATTTTATTGGAGTAATTAATTGGTTGTTGCCGATTTGGATACCTAATTGAGGGTTAAATTTGACCATTGGTCACAGGGTCCTATTGGCTGGCTTTCTATACTTGAGAAACTTGAAAC-GATATCAGATTTTCTCTGTACTGTATCCTGAAATTTTGCCAGAAGACTGCCATTGGGAAAGGCCTATTTGAGATTTTTCCTGCCTGGAATCCTCTATGCAGTTGTCTTCCCCATTGGGATTTTATCCTGACACCAGTTGTTA-TGGGGAAAACCCCCAATTTGTTGTTATGTTTTTTGAAACGCCCAATTGAGAGATTTATATTAAATTTGAATTCGGCCCCTAAGGGCCCCATTAAGGGAGAATATG-TCTCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="393" PGL_stop="2223"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="393" e_stop="2223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="393" e_stop="2223" e_length="1831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="393" stop="2223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGTTGAGTCCTTGTCCGATTCCACTATTTATATGGCATATTACACAGTGGCACACTTCTTGCAGAAAGGGGACATGTATGGTAATGATCGTTCTTCAGTGAAACCAGAGCACTTGACAGATGAGGTCTGGGAATTCTTGTTCTGTGATGGGCCTTTTCCTGAAAATTCTTATATATCTTCTTCTCTTCTAAAGGAGATGAAGCAGGAATTTCTCTACTGGTATCCATTCGATCTTAGAGTTTCTGGCAAGGATCTTATTCAGAATCATCTTACCTTTTGCATCTATAACCACACTGCCCTCTTCCCTAAGCACCACTGGCCACGTGGTTTCAGATGCAATGGGCATATAATGCTTAACTCTGAGAAGATGTCTAAGTCCACTGGGAATTTCCGAACACTCCGGCAGGCAATTGAAGAGTTTTCAGCTGATGCCACACGCTTTTCTCTTGCTGATGCGGGTGATGGGATGGACGATGCTAATTTTGTCTTTGAAACAGCTAATGCTGCTATCTTACGTCTTACAAAAGAAATAGCATGGATGCAGGAAGTCCTTGATGCAGAGACATCTTTAAGAACTGGGCCTCCATCCACATATGCTGACCGCGTATTTGCTAATGAAATAAATATTGCAGTAAGGACTACAGAGAAGAACTATAGTGAGTACATGTTCCGGGATGCTCTGAAAACTGGTTTTTATGATCTTCAGGCTGCCAGAGATGAGTATAGGCTCTCCTGTGGTTCAGGAGGCATGAACCGGGATTTGCTATGGCGATTTATGGATGTTCAAACACGACTTATTGCTCCTATCTGTCCACACTATGCTGAGTATGCCTGGAGAAAGCTTTTGAAGAAGGATGGTTATGGCATCAAAGCTGGCTGGCCAGAGGCTGATTTGCCAGATCTTAGCCTTAAGAAGGCCAACAAATATTTGCAAGACACGATTGTCTCGATGAGGAAGCTGCTTCAGAAGCAAGTTTCTGGTTCAAAGAAAGGAAATGCCAATTTGACTAGCCAAAACAAACCTTCTGTGGGCCTGGTATATGTGGATGAGCAGTATAGTGGATGGAAAAAGGAATGTTTGGGAATCCTGCAGAGGAAATTCGACACTTCAACTGGCTCCTTTGCACCTGACAAAGAAATCCTCTCCGAATTGCAGAAGAGTGAGATCGGGCAACAAGGCAACTTCAAACAAATACAAAAGCTGTGTATGCCATTCTTGAGGTTCAAGAAAGACGAAGTAGTGGCTGTTGGGGTTCAAGCATTGGACTTGAAGCTTCCGTTTGGTGAGATTGAAGTCCTTGAGAAGAACTCGGAGTTGATCAAGAGACAGCTTGGTCTTGAGACATTGGAGATCTTATCTATGACAGATGATGCTCTAGAGAGAGCAGGGCCTCATGCTGCAGTTGTGAAGCAGAATCCTCCCTCACCAGGAAATCCAACTGCTATCTTTCTCTGAGTAAATCATTTTTGCTGCATAAGTTTTGTGATGAACAAGTCTTGTTTGAGACCTACATGATGTGATACTCTCTTTCTAGATCTTTTTTGTCCGTGCATTCTGCCTACATTCTATTACTTGCTGACATTCTAGGTCCAAATTAATGGTTTATTTGCTTCAATCTTGATATGGAGCAGCTGCAATCATATCTCCACAGTAGTACTCGTTGAGTAGGAATTTGACAATTTGAGCATCTTTGAGTTTACCATTCTACAAGGTTTTCCTAGTTGTATCATCTTTTGATCATTTCTGCTTATAGCTTGATTGTCTTTTGATGCTGTATAAGCTGTTCAAGTATGACTGTTTTTTGTTGAGTAATTTACGTAATTTCAT</gDNA_template>
            <first_frame> L  S  *  V  L  V  R  F  H  Y  L  Y  G  I  L  H  S  G  T  L  L  A  E  R  G  H  V  W  *  *  S  F  F  S  E  T  R  A  L  D  R  *  G  L  G  I  L  V  L  *  W  A  F  S  *  K  F  L  Y  I  F  F  S  S  K  G  D  E  A  G  I  S  L  L  V  S  I  R  S  *  S  F  W  Q  G  S  Y  S  E  S  S  Y  L  L  H  L  *  P  H  C  P  L  P  *  A  P  L  A  T  W  F  Q  M  Q  W  A  Y  N  A  *  L  *  E  D  V  *  V  H  W  E  F  P  N  T  P  A  G  N  *  R  V  F  S  *  C  H  T  L  F  S  C  *  C  G  *  W  D  G  R  C  *  F  C  L  *  N  S  *  C  C  Y  L  T  S  Y  K  R  N  S  M  D  A  G  S  P  *  C  R  D  I  F  K  N  W  A  S  I  H  I  C  *  P  R  I  C  *  *  N  K  Y  C  S  K  D  Y  R  E  E  L  *  *  V  H  V  P  G  C  S  E  N  W  F  L  *  S  S  G  C  Q  R  *  V  *  A  L  L  W  F  R  R  H  E  P  G  F  A  M  A  I  Y  G  C  S  N  T  T  Y  C  S  Y  L  S  T  L  C  *  V  C  L  E  K  A  F  E  E  G  W  L  W  H  Q  S  W  L  A  R  G  *  F  A  R  S  *  P  *  E  G  Q  Q  I  F  A  R  H  D  C  L  D  E  E  A  A  S  E  A  S  F  W  F  K  E  R  K  C  Q  F  D  *  P  K  Q  T  F  C  G  P  G  I  C  G  *  A  V  *  W  M  E  K  G  M  F  G  N  P  A  E  E  I  R  H  F  N  W  L  L  C  T  *  Q  R  N  P  L  R  I  A  E  E  *  D  R  A  T  R  Q  L  Q  T  N  T  K  A  V  Y  A  I  L  E  V  Q  E  R  R  S  S  G  C  W  G  S  S  I  G  L  E  A  S  V  W  *  D  *  S  P  *  E  E  L  G  V  D  Q  E  T  A  W  S  *  D  I  G  D  L  I  Y  D  R  *  C  S  R  E  S  R  A  S  C  C  S  C  E  A  E  S  S  L  T  R  K  S  N  C  Y  L  S  L  S  K  S  F  L  L  H  K  F  C  D  E  Q  V  L  F  E  T  Y  M  M  *  Y  S  L  S  R  S  F  L  S  V  H  S  A  Y  I  L  L  L  A  D  I  L  G  P  N  *  W  F  I  C  F  N  L  D  M  E  Q  L  Q  S  Y  L  H  S  S  T  R  *  V  G  I  *  Q  F  E  H  L  *  V  Y  H  S  T  R  F  S  *  L  Y  H  L  L  I  I  S  A  Y  S  L  I  V  F  *  C  C  I  S  C  S  S  M  T  V  F  C  *  V  I  Y  V  I  S  </first_frame>
            <second_frame>  L  V  E  S  L  S  D  S  T  I  Y  M  A  Y  Y  T  V  A  H  F  L  Q  K  G  D  M  Y  G  N  D  R  S  S  V  K  P  E  H  L  T  D  E  V  W  E  F  L  F  C  D  G  P  F  P  E  N  S  Y  I  S  S  S  L  L  K  E  M  K  Q  E  F  L  Y  W  Y  P  F  D  L  R  V  S  G  K  D  L  I  Q  N  H  L  T  F  C  I  Y  N  H  T  A  L  F  P  K  H  H  W  P  R  G  F  R  C  N  G  H  I  M  L  N  S  E  K  M  S  K  S  T  G  N  F  R  T  L  R  Q  A  I  E  E  F  S  A  D  A  T  R  F  S  L  A  D  A  G  D  G  M  D  D  A  N  F  V  F  E  T  A  N  A  A  I  L  R  L  T  K  E  I  A  W  M  Q  E  V  L  D  A  E  T  S  L  R  T  G  P  P  S  T  Y  A  D  R  V  F  A  N  E  I  N  I  A  V  R  T  T  E  K  N  Y  S  E  Y  M  F  R  D  A  L  K  T  G  F  Y  D  L  Q  A  A  R  D  E  Y  R  L  S  C  G  S  G  G  M  N  R  D  L  L  W  R  F  M  D  V  Q  T  R  L  I  A  P  I  C  P  H  Y  A  E  Y  A  W  R  K  L  L  K  K  D  G  Y  G  I  K  A  G  W  P  E  A  D  L  P  D  L  S  L  K  K  A  N  K  Y  L  Q  D  T  I  V  S  M  R  K  L  L  Q  K  Q  V  S  G  S  K  K  G  N  A  N  L  T  S  Q  N  K  P  S  V  G  L  V  Y  V  D  E  Q  Y  S  G  W  K  K  E  C  L  G  I  L  Q  R  K  F  D  T  S  T  G  S  F  A  P  D  K  E  I  L  S  E  L  Q  K  S  E  I  G  Q  Q  G  N  F  K  Q  I  Q  K  L  C  M  P  F  L  R  F  K  K  D  E  V  V  A  V  G  V  Q  A  L  D  L  K  L  P  F  G  E  I  E  V  L  E  K  N  S  E  L  I  K  R  Q  L  G  L  E  T  L  E  I  L  S  M  T  D  D  A  L  E  R  A  G  P  H  A  A  V  V  K  Q  N  P  P  S  P  G  N  P  T  A  I  F  L  *  V  N  H  F  C  C  I  S  F  V  M  N  K  S  C  L  R  P  T  *  C  D  T  L  F  L  D  L  F  C  P  C  I  L  P  T  F  Y  Y  L  L  T  F  *  V  Q  I  N  G  L  F  A  S  I  L  I  W  S  S  C  N  H  I  S  T  V  V  L  V  E  *  E  F  D  N  L  S  I  F  E  F  T  I  L  Q  G  F  P  S  C  I  I  F  *  S  F  L  L  I  A  *  L  S  F  D  A  V  *  A  V  Q  V  *  L  F  F  V  E  *  F  T  *  F  H </second_frame>
            <third_frame>   *  L  S  P  C  P  I  P  L  F  I  W  H  I  T  Q  W  H  T  S  C  R  K  G  T  C  M  V  M  I  V  L  Q  *  N  Q  S  T  *  Q  M  R  S  G  N  S  C  S  V  M  G  L  F  L  K  I  L  I  Y  L  L  L  F  *  R  R  *  S  R  N  F  S  T  G  I  H  S  I  L  E  F  L  A  R  I  L  F  R  I  I  L  P  F  A  S  I  T  T  L  P  S  S  L  S  T  T  G  H  V  V  S  D  A  M  G  I  *  C  L  T  L  R  R  C  L  S  P  L  G  I  S  E  H  S  G  R  Q  L  K  S  F  Q  L  M  P  H  A  F  L  L  L  M  R  V  M  G  W  T  M  L  I  L  S  L  K  Q  L  M  L  L  S  Y  V  L  Q  K  K  *  H  G  C  R  K  S  L  M  Q  R  H  L  *  E  L  G  L  H  P  H  M  L  T  A  Y  L  L  M  K  *  I  L  Q  *  G  L  Q  R  R  T  I  V  S  T  C  S  G  M  L  *  K  L  V  F  M  I  F  R  L  P  E  M  S  I  G  S  P  V  V  Q  E  A  *  T  G  I  C  Y  G  D  L  W  M  F  K  H  D  L  L  L  L  S  V  H  T  M  L  S  M  P  G  E  S  F  *  R  R  M  V  M  A  S  K  L  A  G  Q  R  L  I  C  Q  I  L  A  L  R  R  P  T  N  I  C  K  T  R  L  S  R  *  G  S  C  F  R  S  K  F  L  V  Q  R  K  E  M  P  I  *  L  A  K  T  N  L  L  W  A  W  Y  M  W  M  S  S  I  V  D  G  K  R  N  V  W  E  S  C  R  G  N  S  T  L  Q  L  A  P  L  H  L  T  K  K  S  S  P  N  C  R  R  V  R  S  G  N  K  A  T  S  N  K  Y  K  S  C  V  C  H  S  *  G  S  R  K  T  K  *  W  L  L  G  F  K  H  W  T  *  S  F  R  L  V  R  L  K  S  L  R  R  T  R  S  *  S  R  D  S  L  V  L  R  H  W  R  S  Y  L  *  Q  M  M  L  *  R  E  Q  G  L  M  L  Q  L  *  S  R  I  L  P  H  Q  E  I  Q  L  L  S  F  S  E  *  I  I  F  A  A  *  V  L  *  *  T  S  L  V  *  D  L  H  D  V  I  L  S  F  *  I  F  F  V  R  A  F  C  L  H  S  I  T  C  *  H  S  R  S  K  L  M  V  Y  L  L  Q  S  *  Y  G  A  A  A  I  I  S  P  Q  *  Y  S  L  S  R  N  L  T  I  *  A  S  L  S  L  P  F  Y  K  V  F  L  V  V  S  S  F  D  H  F  C  L  *  L  D  C  L  L  M  L  Y  K  L  F  K  Y  D  C  F  L  L  S  N  L  R  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="394" stop="1851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVESLSDSTIYMAYYTVAHFLQKGDMYGNDRSSVKPEHLTDEVWEFLFCDGPFPENSYISSSLLKEMKQEFLYWYPFDLRVSGKDLIQNHLTFCIYNHTALFPKHHWPRGFRCNGHIMLNSEKMSKSTGNFRTLRQAIEEFSADATRFSLADAGDGMDDANFVFETANAAILRLTKEIAWMQEVLDAETSLRTGPPSTYADRVFANEINIAVRTTEKNYSEYMFRDALKTGFYDLQAARDEYRLSCGSGGMNRDLLWRFMDVQTRLIAPICPHYAEYAWRKLLKKDGYGIKAGWPEADLPDLSLKKANKYLQDTIVSMRKLLQKQVSGSKKGNANLTSQNKPSVGLVYVDEQYSGWKKECLGILQRKFDTSTGSFAPDKEILSELQKSEIGQQGNFKQIQKLCMPFLRFKKDEVVAVGVQALDLKLPFGEIEVLEKNSELIKRQLGLETLEILSMTDDALERAGPHAAVVKQNPPSPGNPTAIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18079" PGL_stop="18894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18079" e_stop="18894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="18079" e_stop="18894" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18079" stop="18894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTACTATTGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACCGTGATTGGGTTCAAGTCTCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTTGAGCCAATGCACCATAGTGATGATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTGAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGAAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGCGAATGATTAGTCGGAAAGATGAAAAAAAATTAATAATATGAATAAGAGTGTGGAGGGACAAAATTATAATAGTTATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGAGAAGACAATTTTTATTAGCAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATAGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAACTAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGCCACAACTCACCTCTATGGAAG</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  T  I  A  P  K  G  *  D  I  N  *  S  F  D  A  P  *  L  G  S  S  L  I  E  L  W  R  N  T  P  Y  M  G  K  T  L  S  L  S  Q  C  T  I  V  M  I  K  *  *  L  R  K  I  I  Y  F  *  *  N  V  L  K  F  I  I  L  N  L  L  H  S  L  K  R  M  W  *  K  H  V  I  T  L  K  S  T  C  *  L  A  P  F  N  H  M  N  V  V  A  A  N  D  *  S  E  R  *  K  K  I  N  N  M  N  K  S  V  E  G  Q  N  Y  N  S  Y  H  C  G  N  D  K  R  K  N  T  M  S  S  S  N  S  P  S  K  *  E  D  N  F  Y  *  Q  N  G  M  K  G  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  D  G  T  L  D  L  S  K  *  C  *  G  V  L  *  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  T  N  *  S  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  Q  M  *  *  N  H  Y  G  L  D  I  C  H  N  S  P  L  W  K </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  L  H  Q  K  G  K  T  S  I  R  V  L  M  H  R  D  W  V  Q  V  S  *  N  Y  G  V  T  R  L  I  W  V  R  H  *  V  *  A  N  A  P  *  *  *  *  N  D  D  *  E  K  *  Y  I  F  D  E  M  S  *  N  S  S  Y  *  I  C  S  I  P  *  K  E  C  G  R  N  M  *  *  L  *  N  P  P  V  D  L  L  H  S  I  I  *  M  W  *  Q  R  M  I  S  R  K  D  E  K  K  L  I  I  *  I  R  V  W  R  D  K  I  I  I  V  I  I  V  V  M  I  K  G  R  T  L  *  V  L  Q  I  V  L  Q  N  E  K  T  I  F  I  S  K  M  V  *  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  Y  R  N  M  M  N  F  K  A  M  T  M  C  L  *  C  K  F  M  K  Y  I  *  L  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  D  K  I  I  M  G  W  I  Y  A  T  T  H  L  Y  G   </second_frame>
            <third_frame>   *  D  D  R  F  K  Y  Y  C  T  K  R  V  R  H  Q  L  E  F  *  C  T  V  I  G  F  K  S  H  R  I  M  A  *  H  A  L  Y  G  *  D  I  E  F  E  P  M  H  H  S  D  D  K  M  M  T  K  K  N  N  I  F  L  M  K  C  L  E  I  H  H  I  E  F  A  P  F  L  E  K  N  V  V  E  T  C  D  N  S  E  I  H  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  *  L  V  G  K  M  K  K  N  *  *  Y  E  *  E  C  G  G  T  K  L  *  *  L  S  L  W  *  *  *  K  E  E  H  Y  E  F  F  K  *  S  F  K  M  R  R  Q  F  L  L  A  K  W  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  I  E  I  *  *  I  L  K  P  *  Q  C  A  Y  N  A  N  L  *  S  T  Y  N  *  L  V  H  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  D  V  I  K  S  L  W  V  G  Y  M  P  Q  L  T  S  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18201" stop="18404"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIEFEPMHHSDDKMMTKKNNIFLMKCLEIHHIEFAPFLEKNVVETCDNSEIHLLTCSIQSYECGSSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20356" PGL_stop="21453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20356" e_stop="21453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="20356" e_stop="21453" e_length="1098"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20356" stop="21453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGTCTATGACACACCGAAAACGTTATAGACCATTCGATTCCAAATATAAATTTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAATGAGCATATTGACATAACACTTCATAAATTCTTGAAAAAGGTTCATGTACATGAAATAATGAAATATGAAGAGATCTCGAATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGATGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATAAAGGTATAATGTCAGTGGGGTACAAATAAATTATAATGCGATAGTATAACCGTAAGATATCAAATATGTTTTGTGCCTTGGGGCATAAAGATTTATCGCAAAAATCCTGACATTATTAGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATATAATAAATAATTGTAATGTCTAGCTAGACAATAAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTGAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGGCCCTAATTGTCCTTGTATTTTTATGAAAAAATCTTGGTAAGGCAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAATTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGCGCAATTAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> Q  S  L  *  H  T  E  N  V  I  D  H  S  I  P  N  I  N  F  L  K  E  G  R  S  K  *  S  I  W  S  *  *  *  G  K  C  Y  K  *  A  Y  *  H  N  T  S  *  I  L  E  K  G  S  C  T  *  N  N  E  I  *  R  D  L  E  *  V  M  S  C  W  N  R  Y  Q  I  T  V  D  G  I  F  D  M  R  *  R  S  M  I  *  I  V  T  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  D  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  *  C  D  S  I  T  V  R  Y  Q  I  C  F  V  P  W  G  I  K  I  Y  R  K  N  P  D  I  I  R  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  I  *  *  I  I  V  M  S  S  *  T  I  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  L  K  N  P  Y  M  D  *  N  S  Q  G  R  K  M  V  Q  K  N  G  P  N  C  P  C  I  F  M  K  K  S  W  *  G  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  I  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  R  N  *  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T </first_frame>
            <second_frame>  R  V  Y  D  T  P  K  T  L  *  T  I  R  F  Q  I  *  I  S  L  K  K  E  G  A  N  D  Q  Y  G  H  D  N  E  A  S  A  I  N  E  H  I  D  I  T  L  H  K  F  L  K  K  V  H  V  H  E  I  M  K  Y  E  E  I  S  N  K  L  C  L  V  G  I  D  I  K  *  P  S  M  V  S  L  I  *  G  S  A  Q  *  Y  K  L  *  R  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  I  V  H  K  *  R  Y  N  V  S  G  V  Q  I  N  Y  N  A  I  V  *  P  *  D  I  K  Y  V  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  Y  N  K  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  F  N  K  A  *  R  I  L  I  W  I  E  I  V  K  E  E  K  W  Y  K  R  M  A  L  I  V  L  V  F  L  *  K  N  L  G  K  A  K  F  Y  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L   </second_frame>
            <third_frame>   E  S  M  T  H  R  K  R  Y  R  P  F  D  S  K  Y  K  F  P  *  R  R  K  E  Q  M  I  N  M  V  M  I  M  R  Q  V  L  *  M  S  I  L  T  *  H  F  I  N  S  *  K  R  F  M  Y  M  K  *  *  N  M  K  R  S  R  I  S  Y  V  L  L  E  S  I  S  N  N  R  R  W  Y  L  *  Y  E  V  A  L  N  D  I  N  C  D  E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  *  *  S  I  N  K  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  M  F  C  A  L  G  H  K  D  L  S  Q  K  S  *  H  Y  *  R  C  F  L  L  W  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  I  I  N  N  C  N  V  *  L  D  N  K  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  S  I  K  L  E  E  S  L  Y  G  L  K  *  S  R  K  K  N  G  T  K  E  W  P  *  L  S  L  Y  F  Y  E  K  I  L  V  R  Q  N  F  I  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  F  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  N  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  A  Q  L  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0163K16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="57874" PGL_stop="59123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57874" e_stop="57935"/>
            <exon e_start="58699" e_stop="59123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57874" e_stop="57935" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="57936" i_stop="58698" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="58699" e_stop="59123" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57874" stop="57935"/>
              <exon start="58699" stop="59123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTTCTAAGCTACTGCTGCCCATCGGCAGTCATGGTAAACAAGTTCCGCAGGCAAATTG : AGGATTCCAAAAGGATTTGCCAGCAGATATTGCAAGAACATATTAAACCCGGTGTATCTTGAGGTTCCCAATGGAGAAGTATGGGAGGTTGAACTGGAACATTCTGAAGGCCACATTTGGCTAGCTGAAGGCTGGAAGGATTTCAGCGACTATTACTCAATAAGACGCGGGAACTTTTTTATGTTCGGATACAATGCTCGTTCTCATTTTAATGTCACTATATTTGATTTTAGTGCAGCAGAAATTGAATATCCACCAGCAGAGATTGAGTCGGATGATTCTATAGATATATCGGATGTGGTTGAGTATTCTTCTGAATATCTGAGCCATGACCCCTTAGTGAAGGAGAGAAAAAGAATAAGACAAGAAGGGGAAGAAGAGAATGATATTCCAGTTGAACGTCAAACTATTGTAATTGATGAAGA</gDNA_template>
            <first_frame> M  L  S  K  L  L  L  P  I  G  S  H  G  K  Q  V  P  Q  A  N  * :   G  F  Q  K  D  L  P  A  D  I  A  R  T  Y  *  T  R  C  I  L  R  F  P  M  E  K  Y  G  R  L  N  W  N  I  L  K  A  T  F  G  *  L  K  A  G  R  I  S  A  T  I  T  Q  *  D  A  G  T  F  L  C  S  D  T  M  L  V  L  I  L  M  S  L  Y  L  I  L  V  Q  Q  K  L  N  I  H  Q  Q  R  L  S  R  M  I  L  *  I  Y  R  M  W  L  S  I  L  L  N  I  *  A  M  T  P  *  *  R  R  E  K  E  *  D  K  K  G  K  K  R  M  I  F  Q  L  N  V  K  L  L  *  L  M  K  </first_frame>
            <second_frame>  C  F  L  S  Y  C  C  P  S  A  V  M  V  N  K  F  R  R  Q  I   : E  D  S  K  R  I  C  Q  Q  I  L  Q  E  H  I  K  P  G  V  S  *  G  S  Q  W  R  S  M  G  G  *  T  G  T  F  *  R  P  H  L  A  S  *  R  L  E  G  F  Q  R  L  L  L  N  K  T  R  E  L  F  Y  V  R  I  Q  C  S  F  S  F  *  C  H  Y  I  *  F  *  C  S  R  N  *  I  S  T  S  R  D  *  V  G  *  F  Y  R  Y  I  G  C  G  *  V  F  F  *  I  S  E  P  *  P  L  S  E  G  E  K  K  N  K  T  R  R  G  R  R  E  *  Y  S  S  *  T  S  N  Y  C  N  *  *  R </second_frame>
            <third_frame>   A  F  *  A  T  A  A  H  R  Q  S  W  *  T  S  S  A  G  K  L  :  R  I  P  K  G  F  A  S  R  Y  C  K  N  I  L  N  P  V  Y  L  E  V  P  N  G  E  V  W  E  V  E  L  E  H  S  E  G  H  I  W  L  A  E  G  W  K  D  F  S  D  Y  Y  S  I  R  R  G  N  F  F  M  F  G  Y  N  A  R  S  H  F  N  V  T  I  F  D  F  S  A  A  E  I  E  Y  P  P  A  E  I  E  S  D  D  S  I  D  I  S  D  V  V  E  Y  S  S  E  Y  L  S  H  D  P  L  V  K  E  R  K  R  I  R  Q  E  G  E  E  E  N  D  I  P  V  E  R  Q  T  I  V  I  D  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57915" stop="57935"/>
                    <exon start="58699" stop="59121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSAGKLRIPKGFASRYCKNILNPVYLEVPNGEVWEVELEHSEGHIWLAEGWKDFSDYYSIRRGNFFMFGYNARSHFNVTIFDFSAAEIEYPPAEIESDDSIDISDVVEYSSEYLSHDPLVKERKRIRQEGEEENDIPVERQTIVIDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62003" PGL_stop="66101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62003" e_stop="62277"/>
            <exon e_start="62916" e_stop="63062"/>
            <exon e_start="63309" e_stop="63455"/>
            <exon e_start="64279" e_stop="64341"/>
            <exon e_start="64424" e_stop="64500"/>
            <exon e_start="64841" e_stop="64946"/>
            <exon e_start="65157" e_stop="65507"/>
            <exon e_start="65611" e_stop="65676"/>
            <exon e_start="65883" e_stop="66101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="0.985"/>
          <exon-intron don_prob="0.975" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.980" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.099" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="62003" e_stop="62277" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="62278" i_stop="62915" i_length="638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62916" e_stop="63062" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.931">
            <gDNA_intron_boundary i_start="63063" i_stop="63308" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="63309" e_stop="63455" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63456" i_stop="64278" i_length="823"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64279" e_stop="64341" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.949">
            <gDNA_intron_boundary i_start="64342" i_stop="64423" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64424" e_stop="64500" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.630">
            <gDNA_intron_boundary i_start="64501" i_stop="64840" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64841" e_stop="64946" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.885" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64947" i_stop="65156" i_length="210"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65157" e_stop="65507" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="0.099" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65508" i_stop="65610" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65611" e_stop="65676" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65677" i_stop="65882" i_length="206"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65883" e_stop="66101" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62003" stop="62277"/>
              <exon start="62916" stop="63062"/>
              <exon start="63309" stop="63455"/>
              <exon start="64279" stop="64341"/>
              <exon start="64424" stop="64500"/>
              <exon start="64841" stop="64946"/>
              <exon start="65157" stop="65507"/>
              <exon start="65611" stop="65676"/>
              <exon start="65883" stop="66101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTCCAGTTTCGGTTCGCAAATCAGATAGTCATTCTAGGTATATTTGGGATGGGAAAGACTTGAAGTTGGTATCTGTTGACGGGAATGCTTTTTCGATATCCGATTTCGACTCTAATTTTGAAGATACAGTTCATAAGTTGGTCAGAATTTGTGTTTCGGCAATAAGAAATTTCTTTCTTCCGAGGGAAGTTAGTCGTAATTACCTTGAATACGTGAAGTGGAAGTTTGTTCATCGTGTTTCCAGTTCTGCTCTCCAAGTTCTGGCGACCCAG : GCTATGTTGCGGGCAATTGGAATTGGGAACTCCCGTTCACTTCCATTGGCTGCTGCACTAAATTGGGTCCTGAAGGATGGTCTTGGACGGTTGTGCAGGTGCATCTACACTGCTAGCCTAGCATCTTCTTTTGATACCAATCTTAAG : AGAGTAAGGTTCTGTACATCAGTTCTCTTCAGTTTAAGCATTGGAGTTGAATTGTTGACTCCTGTATTCCCACAATACTTTTTGATGCTTGCATCAATTGCCAACATTGCCAAGCAAATAAGCCTTGCATGTTACCTAGCAACCAGT : ACTGCTGTTCATAGAAGCTTTGCAATTGCTGATAACCTAGGCGAGGTTTCTGCAAAAGGACAG : ATTCAAACAGTCTGCTTTGATAATCTTGGTCTTACACTTGCTGCAACCCTGAACATACTGTCTGCTAATAATCCAAG : ATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAAGGACTAAAGCATGTGCATCTGCAGACATTAACTAAG : GATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGAAGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTATCGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGCACAGCAAAGCTATCTGTGATGACGATGCAATCTTTGAATAGTGAAGACTTATATTTCTTGAGCCCAGAGAGTTTGACTAGTGAACTGAAAAGGAACCAGGAG : TATGGTGTCCTACTTTCTCTGCGGGAAGGGGCAGAAACTACAGATGTGATCAGGGGCATATTGCAT : GCAAGTTATGTCCGCAAGGGTATAGAAGCTTGTGGTAGTTCTAGTGCAGTTCTCAAGCAATGGTTTAACCTGGTTGAAGATGGCAAGAGGTTAACAGAACAAAACTTGAGTTTCTTGTATGAGCAAATGTTGTCTTTAGGGTGGGCATGTAAGAATATTCTGTTGAGCACGCAGGAGCAAGCCCGCTATAGTTTCATAGCTGACTGAGCATATATCTAC</gDNA_template>
            <first_frame> I  F  Q  F  R  F  A  N  Q  I  V  I  L  G  I  F  G  M  G  K  T  *  S  W  Y  L  L  T  G  M  L  F  R  Y  P  I  S  T  L  I  L  K  I  Q  F  I  S  W  S  E  F  V  F  R  Q  *  E  I  S  F  F  R  G  K  L  V  V  I  T  L  N  T  *  S  G  S  L  F  I  V  F  P  V  L  L  S  K  F  W  R  P  R :   L  C  C  G  Q  L  E  L  G  T  P  V  H  F  H  W  L  L  H  *  I  G  S  *  R  M  V  L  D  G  C  A  G  A  S  T  L  L  A  *  H  L  L  L  I  P  I  L  R :   E  *  G  S  V  H  Q  F  S  S  V  *  A  L  E  L  N  C  *  L  L  Y  S  H  N  T  F  *  C  L  H  Q  L  P  T  L  P  S  K  *  A  L  H  V  T  *  Q  P  V :   L  L  F  I  E  A  L  Q  L  L  I  T  *  A  R  F  L  Q  K  D  R :   F  K  Q  S  A  L  I  I  L  V  L  H  L  L  Q  P  *  T  Y  C  L  L  I  I  Q   : D  C  R  L  V  Y  H  L  *  C  T  L  S  S  L  C  L  T  F  L  V  F  I  K  D  *  S  M  C  I  C  R  H  *  L  R :   I  G  L  T  S  L  *  A  H  G  F  N  K  D  L  S  H  L  L  K  R  *  V  N  R  R  V  L  A  Y  L  G  A  E  V  I  F  N  L  N  F  A  V  T  R  P  Y  C  L  V  Y  R  Y  I  F  S  K  G  T  F  L  I  S  F  N  Q  A  E  S  H  G  Q  S  E  L  V  A  *  I  L  D  V  A  Q  Q  S  Y  L  *  *  R  C  N  L  *  I  V  K  T  Y  I  S  *  A  Q  R  V  *  L  V  N  *  K  G  T  R  S :   M  V  S  Y  F  L  C  G  K  G  Q  K  L  Q  M  *  S  G  A  Y  C  M :   Q  V  M  S  A  R  V  *  K  L  V  V  V  L  V  Q  F  S  S  N  G  L  T  W  L  K  M  A  R  G  *  Q  N  K  T  *  V  S  C  M  S  K  C  C  L  *  G  G  H  V  R  I  F  C  *  A  R  R  S  K  P  A  I  V  S  *  L  T  E  H  I  S   </first_frame>
            <second_frame>  S  S  S  F  G  S  Q  I  R  *  S  F  *  V  Y  L  G  W  E  R  L  E  V  G  I  C  *  R  E  C  F  F  D  I  R  F  R  L  *  F  *  R  Y  S  S  *  V  G  Q  N  L  C  F  G  N  K  K  F  L  S  S  E  G  S  *  S  *  L  P  *  I  R  E  V  E  V  C  S  S  C  F  Q  F  C  S  P  S  S  G  D  P   : G  Y  V  A  G  N  W  N  W  E  L  P  F  T  S  I  G  C  C  T  K  L  G  P  E  G  W  S  W  T  V  V  Q  V  H  L  H  C  *  P  S  I  F  F  *  Y  Q  S  *   : E  S  K  V  L  Y  I  S  S  L  Q  F  K  H  W  S  *  I  V  D  S  C  I  P  T  I  L  F  D  A  C  I  N  C  Q  H  C  Q  A  N  K  P  C  M  L  P  S  N  Q   : Y  C  C  S  *  K  L  C  N  C  *  *  P  R  R  G  F  C  K  R  T   : D  S  N  S  L  L  *  *  S  W  S  Y  T  C  C  N  P  E  H  T  V  C  *  *  S  K  :  I  A  G  W  S  T  I  C  D  V  P  C  L  L  C  A  *  P  F  W  Y  L  S  R  T  K  A  C  A  S  A  D  I  N  *   : G  *  A  *  H  H  Y  K  H  M  D  S  T  R  I  C  P  I  S  *  R  G  E  *  T  G  G  Y  W  L  I  L  E  Q  R  *  F  L  T  *  I  L  P  *  Q  G  L  I  A  W  F  I  A  T  F  L  V  K  E  H  S  *  S  A  L  I  R  Q  R  A  M  V  N  Q  N  W  L  L  K  S  *  T  L  H  S  K  A  I  C  D  D  D  A  I  F  E  *  *  R  L  I  F  L  E  P  R  E  F  D  *  *  T  E  K  E  P  G   : V  W  C  P  T  F  S  A  G  R  G  R  N  Y  R  C  D  Q  G  H  I  A   : C  K  L  C  P  Q  G  Y  R  S  L  W  *  F  *  C  S  S  Q  A  M  V  *  P  G  *  R  W  Q  E  V  N  R  T  K  L  E  F  L  V  *  A  N  V  V  F  R  V  G  M  *  E  Y  S  V  E  H  A  G  A  S  P  L  *  F  H  S  *  L  S  I  Y  L  </second_frame>
            <third_frame>   L  P  V  S  V  R  K  S  D  S  H  S  R  Y  I  W  D  G  K  D  L  K  L  V  S  V  D  G  N  A  F  S  I  S  D  F  D  S  N  F  E  D  T  V  H  K  L  V  R  I  C  V  S  A  I  R  N  F  F  L  P  R  E  V  S  R  N  Y  L  E  Y  V  K  W  K  F  V  H  R  V  S  S  S  A  L  Q  V  L  A  T  Q  :  A  M  L  R  A  I  G  I  G  N  S  R  S  L  P  L  A  A  A  L  N  W  V  L  K  D  G  L  G  R  L  C  R  C  I  Y  T  A  S  L  A  S  S  F  D  T  N  L  K  :  R  V  R  F  C  T  S  V  L  F  S  L  S  I  G  V  E  L  L  T  P  V  F  P  Q  Y  F  L  M  L  A  S  I  A  N  I  A  K  Q  I  S  L  A  C  Y  L  A  T  S  :  T  A  V  H  R  S  F  A  I  A  D  N  L  G  E  V  S  A  K  G  Q  :  I  Q  T  V  C  F  D  N  L  G  L  T  L  A  A  T  L  N  I  L  S  A  N  N  P  R :   L  Q  A  G  L  P  F  V  M  Y  P  V  F  S  V  L  D  L  F  G  I  Y  Q  G  L  K  H  V  H  L  Q  T  L  T  K  :  D  R  L  N  I  I  I  S  T  W  I  Q  Q  G  F  V  P  S  P  E  E  V  S  K  Q  E  G  I  G  L  S  W  S  R  G  N  F  *  L  K  F  C  R  N  K  A  L  L  L  G  L  S  L  H  F  *  *  R  N  I  L  N  Q  L  *  S  G  R  E  P  W  S  I  R  I  G  C  L  N  P  R  R  C  T  A  K  L  S  V  M  T  M  Q  S  L  N  S  E  D  L  Y  F  L  S  P  E  S  L  T  S  E  L  K  R  N  Q  E  :  Y  G  V  L  L  S  L  R  E  G  A  E  T  T  D  V  I  R  G  I  L  H  :  A  S  Y  V  R  K  G  I  E  A  C  G  S  S  S  A  V  L  K  Q  W  F  N  L  V  E  D  G  K  R  L  T  E  Q  N  L  S  F  L  Y  E  Q  M  L  S  L  G  W  A  C  K  N  I  L  L  S  T  Q  E  Q  A  R  Y  S  F  I  A  D  *  A  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62005" stop="62277"/>
                    <exon start="62916" stop="63062"/>
                    <exon start="63309" stop="63455"/>
                    <exon start="64279" stop="64341"/>
                    <exon start="64424" stop="64500"/>
                    <exon start="64841" stop="64946"/>
                    <exon start="65157" stop="65270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPVSVRKSDSHSRYIWDGKDLKLVSVDGNAFSISDFDSNFEDTVHKLVRICVSAIRNFFLPREVSRNYLEYVKWKFVHRVSSSALQVLATQAMLRAIGIGNSRSLPLAAALNWVLKDGLGRLCRCIYTASLASSFDTNLKRVRFCTSVLFSLSIGVELLTPVFPQYFLMLASIANIAKQISLACYLATSTAVHRSFAIADNLGEVSAKGQIQTVCFDNLGLTLAATLNILSANNPRLQAGLPFVMYPVFSVLDLFGIYQGLKHVHLQTLTKDRLNIIISTWIQQGFVPSPEEVSKQEGIGLSWSRGNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65352" stop="65507"/>
                    <exon start="65611" stop="65676"/>
                    <exon start="65883" stop="66089"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGREPWSIRIGCLNPRRCTAKLSVMTMQSLNSEDLYFLSPESLTSELKRNQEYGVLLSLREGAETTDVIRGILHASYVRKGIEACGSSSAVLKQWFNLVEDGKRLTEQNLSFLYEQMLSLGWACKNILLSTQEQARYSFIAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="69353" PGL_stop="66935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69353" e_stop="69199"/>
            <exon e_start="69105" e_stop="69053"/>
            <exon e_start="67795" e_stop="67619"/>
            <exon e_start="67525" e_stop="67448"/>
            <exon e_start="67366" e_stop="66935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69353" e_stop="69199" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.881">
            <gDNA_intron_boundary i_start="69198" i_stop="69106" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69105" e_stop="69053" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="69052" i_stop="67796" i_length="1257"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67619" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="67618" i_stop="67526" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67525" e_stop="67448" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67447" i_stop="67367" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="67366" e_stop="66935" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69353" stop="69199"/>
              <exon start="69105" stop="69053"/>
              <exon start="67795" stop="67619"/>
              <exon start="67525" stop="67448"/>
              <exon start="67366" stop="66935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATTATTTCACAAGTACACTATCCTTTACTTGTGCTCCAAAACCCTAGCCCTAAAACCCTCTGCCAAAGTGAGACACTTTGCTCGAGCGATATGTCGGGAAGAGGAGAAGATAGTGATTCCGATGCGCCGGAAGAACTAACTTCCGTACAG : GGAATTCAAAACAATGAGGAGATTAGAAAAGTTGAAAAAGAACACAAGGCTAG : AGTTGTTCGGGAAAGGAAGGAACGTCGTAGACAATGGGCTCAAAAGTTAACTCCACGACCTAAACAAAATGATGAAAGCATTGAAGACACAAAAGAACCTGAAGATGCCCAAGAGTCAAAGGACAATAGAGGGATGCTGCCTGATGAGATTGTAAAAATTCTTGCAGCTCGTGAAAA : GAAAGTTTTCTCGTCAGACTCGGAAGAAGAACATGAGAAGCAGCCTACATCTAAAAACAAAAGATCCAAGAGCTCTGG : GTCTGGACCAGTTATTTTGAAGGATCTACCACCTCCTCCGTGCTTAGAGAGCTCACTGGCATTCTTGAAGAAACGTAAGATGCAGGTGTCAAGATCATCAGCTGTTCTGAACAATTCCAGTCAAGCATTACGCCTTCTATCTACATCTGGCTTGCTACGTACGAAATGATAGGTGATGATTTTGAAGATTTTAGCCCGAGTGATGTCAATGCTGTATTGCTTGCTGTAATGAGAATATGCTGGTAGAGGTGTTAAATGGCGAGCTGGTTTTGGACACTGATGGGTAAACCAAAAAAACAAAACAAAACATTGTAACAACTTTTTGATGGTATATTGCAATTTTATTGATACTTGTGGGTAGGAACTGCTGAACTGTTTACACTGCAACAGTCTCATCTCAGTCAAGTGTTGAATCATTAAGTGGCTGCACAA</gDNA_template>
            <first_frame> Q  K  L  F  H  K  Y  T  I  L  Y  L  C  S  K  T  L  A  L  K  P  S  A  K  V  R  H  F  A  R  A  I  C  R  E  E  E  K  I  V  I  P  M  R  R  K  N  *  L  P  Y  R :   E  F  K  T  M  R  R  L  E  K  L  K  K  N  T  R  L   : E  L  F  G  K  G  R  N  V  V  D  N  G  L  K  S  *  L  H  D  L  N  K  M  M  K  A  L  K  T  Q  K  N  L  K  M  P  K  S  Q  R  T  I  E  G  C  C  L  M  R  L  *  K  F  L  Q  L  V  K   : R  K  F  S  R  Q  T  R  K  K  N  M  R  S  S  L  H  L  K  T  K  D  P  R  A  L   : G  L  D  Q  L  F  *  R  I  Y  H  L  L  R  A  *  R  A  H  W  H  S  *  R  N  V  R  C  R  C  Q  D  H  Q  L  F  *  T  I  P  V  K  H  Y  A  F  Y  L  H  L  A  C  Y  V  R  N  D  R  *  *  F  *  R  F  *  P  E  *  C  Q  C  C  I  A  C  C  N  E  N  M  L  V  E  V  L  N  G  E  L  V  L  D  T  D  G  *  T  K  K  T  K  Q  N  I  V  T  T  F  *  W  Y  I  A  I  L  L  I  L  V  G  R  N  C  *  T  V  Y  T  A  T  V  S  S  Q  S  S  V  E  S  L  S  G  C  T  </first_frame>
            <second_frame>  K  N  Y  F  T  S  T  L  S  F  T  C  A  P  K  P  *  P  *  N  P  L  P  K  *  D  T  L  L  E  R  Y  V  G  K  R  R  R  *  *  F  R  C  A  G  R  T  N  F  R  T   : G  N  S  K  Q  *  G  D  *  K  S  *  K  R  T  Q  G  *  :  S  C  S  G  K  E  G  T  S  *  T  M  G  S  K  V  N  S  T  T  *  T  K  *  *  K  H  *  R  H  K  R  T  *  R  C  P  R  V  K  G  Q  *  R  D  A  A  *  *  D  C  K  N  S  C  S  S  *  K  :  E  S  F  L  V  R  L  G  R  R  T  *  E  A  A  Y  I  *  K  Q  K  I  Q  E  L  W  :  V  W  T  S  Y  F  E  G  S  T  T  S  S  V  L  R  E  L  T  G  I  L  E  E  T  *  D  A  G  V  K  I  I  S  C  S  E  Q  F  Q  S  S  I  T  P  S  I  Y  I  W  L  A  T  Y  E  M  I  G  D  D  F  E  D  F  S  P  S  D  V  N  A  V  L  L  A  V  M  R  I  C  W  *  R  C  *  M  A  S  W  F  W  T  L  M  G  K  P  K  K  Q  N  K  T  L  *  Q  L  F  D  G  I  L  Q  F  Y  *  Y  L  W  V  G  T  A  E  L  F  T  L  Q  Q  S  H  L  S  Q  V  L  N  H  *  V  A  A  Q </second_frame>
            <third_frame>   K  I  I  S  Q  V  H  Y  P  L  L  V  L  Q  N  P  S  P  K  T  L  C  Q  S  E  T  L  C  S  S  D  M  S  G  R  G  E  D  S  D  S  D  A  P  E  E  L  T  S  V  Q  :  G  I  Q  N  N  E  E  I  R  K  V  E  K  E  H  K  A  R :   V  V  R  E  R  K  E  R  R  R  Q  W  A  Q  K  L  T  P  R  P  K  Q  N  D  E  S  I  E  D  T  K  E  P  E  D  A  Q  E  S  K  D  N  R  G  M  L  P  D  E  I  V  K  I  L  A  A  R  E  K :   K  V  F  S  S  D  S  E  E  E  H  E  K  Q  P  T  S  K  N  K  R  S  K  S  S  G :   S  G  P  V  I  L  K  D  L  P  P  P  P  C  L  E  S  S  L  A  F  L  K  K  R  K  M  Q  V  S  R  S  S  A  V  L  N  N  S  S  Q  A  L  R  L  L  S  T  S  G  L  L  R  T  K  *  *  V  M  I  L  K  I  L  A  R  V  M  S  M  L  Y  C  L  L  *  *  E  Y  A  G  R  G  V  K  W  R  A  G  F  G  H  *  W  V  N  Q  K  N  K  T  K  H  C  N  N  F  L  M  V  Y  C  N  F  I  D  T  C  G  *  E  L  L  N  C  L  H  C  N  S  L  I  S  V  K  C  *  I  I  K  W  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69351" stop="69199"/>
                    <exon start="69105" stop="69053"/>
                    <exon start="67795" stop="67619"/>
                    <exon start="67525" stop="67448"/>
                    <exon start="67366" stop="67198"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIISQVHYPLLVLQNPSPKTLCQSETLCSSDMSGRGEDSDSDAPEELTSVQGIQNNEEIRKVEKEHKARVVRERKERRRQWAQKLTPRPKQNDESIEDTKEPEDAQESKDNRGMLPDEIVKILAAREKKVFSSDSEEEHEKQPTSKNKRSKSSGSGPVILKDLPPPPCLESSLAFLKKRKMQVSRSSAVLNNSSQALRLLSTSGLLRTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75891" PGL_stop="70273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75891" e_stop="75621"/>
            <exon e_start="72066" e_stop="71959"/>
            <exon e_start="71824" e_stop="71754"/>
            <exon e_start="70739" e_stop="70273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.739" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="75891" e_stop="75621" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.739">
            <gDNA_intron_boundary i_start="75620" i_stop="72067" i_length="3554"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72066" e_stop="71959" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="71958" i_stop="71825" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71824" e_stop="71754" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.853">
            <gDNA_intron_boundary i_start="71753" i_stop="70740" i_length="1014"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="70739" e_stop="70273" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75891" stop="75621"/>
              <exon start="72066" stop="71959"/>
              <exon start="71824" stop="71754"/>
              <exon start="70739" stop="70508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70624" stop="70273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330581" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGCAAATACTCGACAGACTGTTGTAGAGTGCAGAATCATTCGGAATTTGTTCAATAACTTTTCAGATCTAGTAGTAGGGGTTGAAAGAAAAATGGGTAGGATGGATTATTTGGCTATGAAGACTGATGAAGATACTAACAAATTGATTAATGAAGATCTGAATGAGCTAAAGTTAGCTGCTGAGAAGCTCTTTGACCATGCCACTAAACTTGGCGGTCTTGGATTTGGTACTTCTCTTCTCAAATGGTTTGCCTCATTTGCTGCCAT : TTATTTGCTGATACTGGACCGGACAAACTGGAAAACAAATATGTTGACTGGACTTCTAGTCCCATATATCTTCTTCAGTTTCCCTGCAGTGTTATTCCACTTCTTCAG : AGGAGAGGTTGGGAAATGGATTGCTTTCGTTGCAGTAGTACTTAGGCTTTTCTTCCCACGACATTTTCCAG : ACTGGTTGGAAATGCCTGGTTCATTAATCCTACTCCTAGTGGTTTCGCCCAACATCTTTGCCCACACTTTCAGAGACAGCTGGATTGGCACTGCGATATGTCTTTTGATTGGCTGCTATCTCCTCCAAGAGCACATCAGAGCCTCCGGTGGATTCAGAAATTCCTTAACACAAAGCAATGGTATATCTAACACAGTTGGTATAATTCTTCTGTTGGTATATCCAATCTGGGCTCTGGTTCTTCGAGCCGTCTGATGAACTATAGCTACAACGATCATATGTGTGTTTTCGTCCACGAATTCAATGCTCAATGCTGCAAAGCAGACCTCTGAATAAATGGATTTGGTTTTGTTTTAAACATTTCTGGTTATGTGATTATGTACTTTTGACATATGAAGTACTTATGGTTGATGGATTTGATTGTAAAGTTTTCACTCATTCACGCTTGCAATCTATGAACTTGGTAAG</gDNA_template>
            <first_frame> K  K  Q  I  L  D  R  L  L  *  S  A  E  S  F  G  I  C  S  I  T  F  Q  I  *  *  *  G  L  K  E  K  W  V  G  W  I  I  W  L  *  R  L  M  K  I  L  T  N  *  L  M  K  I  *  M  S  *  S  *  L  L  R  S  S  L  T  M  P  L  N  L  A  V  L  D  L  V  L  L  F  S  N  G  L  P  H  L  L  P   : F  I  C  *  Y  W  T  G  Q  T  G  K  Q  I  C  *  L  D  F  *  S  H  I  S  S  S  V  S  L  Q  C  Y  S  T  S  S   : E  E  R  L  G  N  G  L  L  S  L  Q  *  Y  L  G  F  S  S  H  D  I  F  Q  :  T  G  W  K  C  L  V  H  *  S  Y  S  *  W  F  R  P  T  S  L  P  T  L  S  E  T  A  G  L  A  L  R  Y  V  F  *  L  A  A  I  S  S  K  S  T  S  E  P  P  V  D  S  E  I  P  *  H  K  A  M  V  Y  L  T  Q  L  V  *  F  F  C  W  Y  I  Q  S  G  L  W  F  F  E  P  S  D  E  L  *  L  Q  R  S  Y  V  C  F  R  P  R  I  Q  C  S  M  L  Q  S  R  P  L  N  K  W  I  W  F  C  F  K  H  F  W  L  C  D  Y  V  L  L  T  Y  E  V  L  M  V  D  G  F  D  C  K  V  F  T  H  S  R  L  Q  S  M  N  L  V   </first_frame>
            <second_frame>  K  S  K  Y  S  T  D  C  C  R  V  Q  N  H  S  E  F  V  Q  *  L  F  R  S  S  S  R  G  *  K  K  N  G  *  D  G  L  F  G  Y  E  D  *  *  R  Y  *  Q  I  D  *  *  R  S  E  *  A  K  V  S  C  *  E  A  L  *  P  C  H  *  T  W  R  S  W  I  W  Y  F  S  S  Q  M  V  C  L  I  C  C  H  :  L  F  A  D  T  G  P  D  K  L  E  N  K  Y  V  D  W  T  S  S  P  I  Y  L  L  Q  F  P  C  S  V  I  P  L  L  Q  :  R  R  G  W  E  M  D  C  F  R  C  S  S  T  *  A  F  L  P  T  T  F  S  R :   L  V  G  N  A  W  F  I  N  P  T  P  S  G  F  A  Q  H  L  C  P  H  F  Q  R  Q  L  D  W  H  C  D  M  S  F  D  W  L  L  S  P  P  R  A  H  Q  S  L  R  W  I  Q  K  F  L  N  T  K  Q  W  Y  I  *  H  S  W  Y  N  S  S  V  G  I  S  N  L  G  S  G  S  S  S  R  L  M  N  Y  S  Y  N  D  H  M  C  V  F  V  H  E  F  N  A  Q  C  C  K  A  D  L  *  I  N  G  F  G  F  V  L  N  I  S  G  Y  V  I  M  Y  F  *  H  M  K  Y  L  W  L  M  D  L  I  V  K  F  S  L  I  H  A  C  N  L  *  T  W  *  </second_frame>
            <third_frame>   K  A  N  T  R  Q  T  V  V  E  C  R  I  I  R  N  L  F  N  N  F  S  D  L  V  V  G  V  E  R  K  M  G  R  M  D  Y  L  A  M  K  T  D  E  D  T  N  K  L  I  N  E  D  L  N  E  L  K  L  A  A  E  K  L  F  D  H  A  T  K  L  G  G  L  G  F  G  T  S  L  L  K  W  F  A  S  F  A  A  I :   Y  L  L  I  L  D  R  T  N  W  K  T  N  M  L  T  G  L  L  V  P  Y  I  F  F  S  F  P  A  V  L  F  H  F  F  R :   G  E  V  G  K  W  I  A  F  V  A  V  V  L  R  L  F  F  P  R  H  F  P   : D  W  L  E  M  P  G  S  L  I  L  L  L  V  V  S  P  N  I  F  A  H  T  F  R  D  S  W  I  G  T  A  I  C  L  L  I  G  C  Y  L  L  Q  E  H  I  R  A  S  G  G  F  R  N  S  L  T  Q  S  N  G  I  S  N  T  V  G  I  I  L  L  L  V  Y  P  I  W  A  L  V  L  R  A  V  *  *  T  I  A  T  T  I  I  C  V  F  S  S  T  N  S  M  L  N  A  A  K  Q  T  S  E  *  M  D  L  V  L  F  *  T  F  L  V  M  *  L  C  T  F  D  I  *  S  T  Y  G  *  W  I  *  L  *  S  F  H  S  F  T  L  A  I  Y  E  L  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75889" stop="75621"/>
                    <exon start="72066" stop="71959"/>
                    <exon start="71824" stop="71754"/>
                    <exon start="70739" stop="70486"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KANTRQTVVECRIIRNLFNNFSDLVVGVERKMGRMDYLAMKTDEDTNKLINEDLNELKLAAEKLFDHATKLGGLGFGTSLLKWFASFAAIYLLILDRTNWKTNMLTGLLVPYIFFSFPAVLFHFFRGEVGKWIAFVAVVLRLFFPRHFPDWLEMPGSLILLLVVSPNIFAHTFRDSWIGTAICLLIGCYLLQEHIRASGGFRNSLTQSNGISNTVGIILLLVYPIWALVLRAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70475" stop="70275"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRSYVCFRPRIQCSMLQSRPLNKWIWFCFKHFWLCDYVLLTYEVLMVDGFDCKVFTHSRLQSMNLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="81381" PGL_stop="83306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81381" e_stop="81664"/>
            <exon e_start="82660" e_stop="82711"/>
            <exon e_start="82894" e_stop="83199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="81381" e_stop="81664" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81665" i_stop="82659" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82660" e_stop="82711" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82712" i_stop="82893" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="82894" e_stop="83199" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81381" stop="81664"/>
              <exon start="82660" stop="82711"/>
              <exon start="82894" stop="83199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAGAGGAACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCG : GGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAA : AAAACCAAGCTCATGACACGCTTAACCTACACTCTTGATGAGATTGAGGGACCATTTGAAGTGTCTCCGGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAGTTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGAGGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTGCT</gDNA_template>
            <first_frame> K  Q  R  G  T  Q  D  I  *  S  T  K  K  G  V  K  L  W  L  P  L  Y  K  Q  L  L  L  L  C  N  R  Q  R  L  V  L  E  T  T  C  S  *  G  L  L  K  V  *  A  K  H  L  V  L  N  K  V  Q  A  G  L  L  A  L  C  K  L  K  S  R  N  W  L  R  N  V  L  M  L  P  R  L  L  V  L  L  L  P  P  L  P  S  S  S  R :   E  Q  M  R  K  E  F  Q  N  V  *  P  M  M  K  S  K  :  K  T  K  L  M  T  R  L  T  Y  T  L  D  E  I  E  G  P  F  E  V  S  P  D  G  T  V  K  F  E  E  K  D  G  I  D  Y  A  A  V  T  V  Q  L  P  G  G  E  R  V  P  F  L  F  T  I  K  Q  L  V  A  S  G  K  P  E  S  F  S  G  E  F  L  V  P  S  Y  R  G  S  S  F  L  D  P  K  G  R  G  G  S  T  G  Y  D  N  A  V  A  L  P  A </first_frame>
            <second_frame>  N  R  E  E  H  K  T  F  D  Q  Q  K  K  G  *  N  Y  G  C  L  S  T  S  S  C  Y  S  Y  A  T  D  K  G  W  C  *  K  Q  P  A  V  E  V  C  S  K  C  E  Q  S  I  W  C  *  T  R  F  R  Q  A  Y  L  L  F  A  N  *  N  Q  G  I  G  S  E  M  Y  *  C  C  Q  D  C  W  F  C  S  C  H  L  C  P  R  R  L   : G  S  K  C  G  R  S  S  K  T  F  N  L  *  *  N  P  K :   K  P  S  S  *  H  A  *  P  T  L  L  M  R  L  R  D  H  L  K  C  L  R  M  A  L  L  S  L  R  R  R  M  E  L  I  M  L  L  L  Q  F  S  F  L  V  V  S  V  C  P  S  S  S  L  S  N  S  L  W  Q  A  A  S  Q  K  A  L  V  V  S  S  L  C  H  H  T  E  V  H  P  S  L  T  Q  R  D  E  V  D  L  L  A  M  T  T  L  L  H  C  L   </second_frame>
            <third_frame>   T  E  R  N  T  R  H  L  I  N  K  K  R  G  K  I  M  A  A  S  L  Q  A  A  A  T  L  M  Q  P  T  K  V  G  V  R  N  N  L  Q  L  R  S  A  Q  S  V  S  K  A  F  G  V  E  Q  G  S  G  R  L  T  C  S  L  Q  T  E  I  K  E  L  A  Q  K  C  T  D  A  A  K  I  A  G  F  A  L  A  T  S  A  L  V  V  S  :  G  A  N  A  E  G  V  P  K  R  L  T  Y  D  E  I  Q   : K  N  Q  A  H  D  T  L  N  L  H  S  *  *  D  *  G  T  I  *  S  V  S  G  W  H  C  *  V  *  G  E  G  W  N  *  L  C  C  C  Y  S  S  A  S  W  W  *  A  C  A  L  P  L  H  Y  Q  T  A  C  G  K  R  Q  A  R  K  L  *  W  *  V  P  C  A  I  I  Q  R  F  I  L  P  *  P  K  G  T  R  W  I  Y  W  L  *  Q  R  C  C  I  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81383" stop="81664"/>
                    <exon start="82660" stop="82711"/>
                    <exon start="82894" stop="82931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERNTRHLINKKRGKIMAASLQAAATLMQPTKVGVRNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYDEIQKNQAHDTLNLHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82694" stop="82711"/>
                    <exon start="82894" stop="83199"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMMKSKKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82919" stop="83197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTLLMRLRDHLKCLRMALLSLRRRMELIMLLLQFSFLVVSVCPSSSLSNSLWQAASQKALVVSSLCHHTEVHPSLTQRDEVDLLAMTTLLHCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81385" e_stop="81664"/>
            <exon e_start="82660" e_stop="82935"/>
            <exon e_start="83038" e_stop="83306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="81385" e_stop="81664" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81665" i_stop="82659" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="82660" e_stop="82935" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82936" i_stop="83037" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="83038" e_stop="83306" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81385" stop="81664"/>
              <exon start="82660" stop="82935"/>
              <exon start="83038" stop="83306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGGAACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCG : GGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTGCCTTCAAACCAGGCAAATACACTGCCAAGAAATTCTGCCTAGAGCCCACATCATTCACAGTCAAGGCAGAGGGTGTCAGCAAGAACTCAGCCCCAGACTTCCAAAAAACCAAGCTCATGACACGCTTAACCTACACTCTTGATGAG : CGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGTGAGTTCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGAGGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTGCTGGAGGGAGAGGAGACGAGGAGGAGCTTCAGAAGGAGAACGTAAAGAACACTGCATCTTTAACAGGAAAGATCACCTTGAGTGTTACCCAGAGCAAGCCAGAGACTGG</gDNA_template>
            <first_frame> R  E  E  H  K  T  F  D  Q  Q  K  K  G  *  N  Y  G  C  L  S  T  S  S  C  Y  S  Y  A  T  D  K  G  W  C  *  K  Q  P  A  V  E  V  C  S  K  C  E  Q  S  I  W  C  *  T  R  F  R  Q  A  Y  L  L  F  A  N  *  N  Q  G  I  G  S  E  M  Y  *  C  C  Q  D  C  W  F  C  S  C  H  L  C  P  R  R  L   : G  S  K  C  G  R  S  S  K  T  F  N  L  *  *  N  P  K  *  D  I  Y  G  S  K  G  N  W  N  C  *  P  M  S  Y  H  *  R  R  C  W  Q  L  C  L  Q  T  R  Q  I  H  C  Q  E  I  L  P  R  A  H  I  I  H  S  Q  G  R  G  C  Q  Q  E  L  S  P  R  L  P  K  N  Q  A  H  D  T  L  N  L  H  S  *  *   : A  C  A  L  P  L  H  Y  Q  T  A  C  G  K  R  Q  A  R  K  L  *  W  *  V  P  C  A  I  I  Q  R  F  I  L  P  *  P  K  G  T  R  W  I  Y  W  L  *  Q  R  C  C  I  A  C  W  R  E  R  R  R  G  G  A  S  E  G  E  R  K  E  H  C  I  F  N  R  K  D  H  L  E  C  Y  P  E  Q  A  R  D  W </first_frame>
            <second_frame>  E  R  N  T  R  H  L  I  N  K  K  R  G  K  I  M  A  A  S  L  Q  A  A  A  T  L  M  Q  P  T  K  V  G  V  R  N  N  L  Q  L  R  S  A  Q  S  V  S  K  A  F  G  V  E  Q  G  S  G  R  L  T  C  S  L  Q  T  E  I  K  E  L  A  Q  K  C  T  D  A  A  K  I  A  G  F  A  L  A  T  S  A  L  V  V  S  :  G  A  N  A  E  G  V  P  K  R  L  T  Y  D  E  I  Q  S  K  T  Y  M  E  V  K  G  T  G  T  A  N  Q  C  P  T  I  E  G  G  V  G  S  F  A  F  K  P  G  K  Y  T  A  K  K  F  C  L  E  P  T  S  F  T  V  K  A  E  G  V  S  K  N  S  A  P  D  F  Q  K  T  K  L  M  T  R  L  T  Y  T  L  D  E  :  R  V  P  F  L  F  T  I  K  Q  L  V  A  S  G  K  P  E  S  F  S  G  E  F  L  V  P  S  Y  R  G  S  S  F  L  D  P  K  G  R  G  G  S  T  G  Y  D  N  A  V  A  L  P  A  G  G  R  G  D  E  E  E  L  Q  K  E  N  V  K  N  T  A  S  L  T  G  K  I  T  L  S  V  T  Q  S  K  P  E  T   </second_frame>
            <third_frame>   R  G  T  Q  D  I  *  S  T  K  K  G  V  K  L  W  L  P  L  Y  K  Q  L  L  L  L  C  N  R  Q  R  L  V  L  E  T  T  C  S  *  G  L  L  K  V  *  A  K  H  L  V  L  N  K  V  Q  A  G  L  L  A  L  C  K  L  K  S  R  N  W  L  R  N  V  L  M  L  P  R  L  L  V  L  L  L  P  P  L  P  S  S  S  R :   E  Q  M  R  K  E  F  Q  N  V  *  P  M  M  K  S  K  V  R  H  I  W  K  *  R  E  L  E  L  L  T  N  V  L  P  L  K  E  V  L  A  A  L  P  S  N  Q  A  N  T  L  P  R  N  S  A  *  S  P  H  H  S  Q  S  R  Q  R  V  S  A  R  T  Q  P  Q  T  S  K  K  P  S  S  *  H  A  *  P  T  L  L  M  S :   V  C  P  S  S  S  L  S  N  S  L  W  Q  A  A  S  Q  K  A  L  V  V  S  S  L  C  H  H  T  E  V  H  P  S  L  T  Q  R  D  E  V  D  L  L  A  M  T  T  L  L  H  C  L  L  E  G  E  E  T  R  R  S  F  R  R  R  T  *  R  T  L  H  L  *  Q  E  R  S  P  *  V  L  P  R  A  S  Q  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81386" stop="81664"/>
                    <exon start="82660" stop="82935"/>
                    <exon start="83038" stop="83304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERNTRHLINKKRGKIMAASLQAAATLMQPTKVGVRNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITLSVTQSKPET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="84329" PGL_stop="81387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84329" e_stop="83924"/>
            <exon e_start="81734" e_stop="81387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="0.975"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="84329" e_stop="83924" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83923" i_stop="81735" i_length="2189"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="81734" e_stop="81387" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84329" stop="83924"/>
              <exon start="81734" stop="81387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAGCTGATAATACTATGAAGAAGGTTCTTTTCATTTTTCTCCAAGGAAAATAGAAGTCTGCAGATATCATCCACTGTGACCATGCTTGCGGGTGCAACTAACAATTTAGAATTTTTCGCTGGCACAAGCTCCATGAGATATACTCAGCACAAAGGTTCTACGTCCTATCCCTGTATGCAAAAATGTAACAATTTTCTTCTAACCACTTTTAGGCACCCTATTATATGTCTGAAGGTTTTCCTTTCAGAGCGGTGAAGTCCTAAGCTAGAGAAGAAAGGTTCTAGTGCCAGGTTGATACCTGGGACTAGAATACGAATTCTATATGTTTGGAAGTCAATATTGAAAACAATAAGATGATTATTACTTCATTGGAGCTTAGCGGGGTTAAGTGAACCCAAGGAAGA : GCAACAGCACTGGATACATGGGAAATATAGACATGAAGCAGGCAAGCATTGAATTAGAAAAGCAACTTACCGAGACGACGAGGGCAGAGGTGGCAAGAGCAAAACCAGCAATCTTGGCAGCATCAGTACATTTCTGAGCCAATTCCTTGATTTCAGTTTGCAAAGAGCAAGTAAGCCTGCCTGAACCTTGTTCAACACCAAATGCTTTGCTCACACTTTGAGCAGACCTCAACTGCAGGTTGTTTCTAACACCAACCTTTGTCGGTTGCATAAGAGTAGCAGCTGCTTGTAGAGAGGCAGCCATAATTTTACCCCTTTTTTTGTTGATCAAATGTCTTGTGTTCCTCT</gDNA_template>
            <first_frame> L  S  *  *  Y  Y  E  E  G  S  F  H  F  S  P  R  K  I  E  V  C  R  Y  H  P  L  *  P  C  L  R  V  Q  L  T  I  *  N  F  S  L  A  Q  A  P  *  D  I  L  S  T  K  V  L  R  P  I  P  V  C  K  N  V  T  I  F  F  *  P  L  L  G  T  L  L  Y  V  *  R  F  S  F  Q  S  G  E  V  L  S  *  R  R  K  V  L  V  P  G  *  Y  L  G  L  E  Y  E  F  Y  M  F  G  S  Q  Y  *  K  Q  *  D  D  Y  Y  F  I  G  A  *  R  G  *  V  N  P  R  K   : S  N  S  T  G  Y  M  G  N  I  D  M  K  Q  A  S  I  E  L  E  K  Q  L  T  E  T  T  R  A  E  V  A  R  A  K  P  A  I  L  A  A  S  V  H  F  *  A  N  S  L  I  S  V  C  K  E  Q  V  S  L  P  E  P  C  S  T  P  N  A  L  L  T  L  *  A  D  L  N  C  R  L  F  L  T  P  T  F  V  G  C  I  R  V  A  A  A  C  R  E  A  A  I  I  L  P  L  F  L  L  I  K  C  L  V  F  L  </first_frame>
            <second_frame>  *  A  D  N  T  M  K  K  V  L  F  I  F  L  Q  G  K  *  K  S  A  D  I  I  H  C  D  H  A  C  G  C  N  *  Q  F  R  I  F  R  W  H  K  L  H  E  I  Y  S  A  Q  R  F  Y  V  L  S  L  Y  A  K  M  *  Q  F  S  S  N  H  F  *  A  P  Y  Y  M  S  E  G  F  P  F  R  A  V  K  S  *  A  R  E  E  R  F  *  C  Q  V  D  T  W  D  *  N  T  N  S  I  C  L  E  V  N  I  E  N  N  K  M  I  I  T  S  L  E  L  S  G  V  K  *  T  Q  G  R  :  A  T  A  L  D  T  W  E  I  *  T  *  S  R  Q  A  L  N  *  K  S  N  L  P  R  R  R  G  Q  R  W  Q  E  Q  N  Q  Q  S  W  Q  H  Q  Y  I  S  E  P  I  P  *  F  Q  F  A  K  S  K  *  A  C  L  N  L  V  Q  H  Q  M  L  C  S  H  F  E  Q  T  S  T  A  G  C  F  *  H  Q  P  L  S  V  A  *  E  *  Q  L  L  V  E  R  Q  P  *  F  Y  P  F  F  C  *  S  N  V  L  C  S  S </second_frame>
            <third_frame>   K  L  I  I  L  *  R  R  F  F  S  F  F  S  K  E  N  R  S  L  Q  I  S  S  T  V  T  M  L  A  G  A  T  N  N  L  E  F  F  A  G  T  S  S  M  R  Y  T  Q  H  K  G  S  T  S  Y  P  C  M  Q  K  C  N  N  F  L  L  T  T  F  R  H  P  I  I  C  L  K  V  F  L  S  E  R  *  S  P  K  L  E  K  K  G  S  S  A  R  L  I  P  G  T  R  I  R  I  L  Y  V  W  K  S  I  L  K  T  I  R  *  L  L  L  H  W  S  L  A  G  L  S  E  P  K  E  E :   Q  Q  H  W  I  H  G  K  Y  R  H  E  A  G  K  H  *  I  R  K  A  T  Y  R  D  D  E  G  R  G  G  K  S  K  T  S  N  L  G  S  I  S  T  F  L  S  Q  F  L  D  F  S  L  Q  R  A  S  K  P  A  *  T  L  F  N  T  K  C  F  A  H  T  L  S  R  P  Q  L  Q  V  V  S  N  T  N  L  C  R  L  H  K  S  S  S  C  L  *  R  G  S  H  N  F  T  P  F  F  V  D  Q  M  S  C  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84309" stop="84073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRFFSFFSKENRSLQISSTVTMLAGATNNLEFFAGTSSMRYTQHKGSTSYPCMQKCNNFLLTTFRHPIICLKVFLSER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88792" PGL_stop="89927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88792" e_stop="89927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="88792" e_stop="89927" e_length="1136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88792" stop="89927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTCACTCCGTTTCAAAACAAAAAAAAACTGCACATTATTGATTGAGTTGCAGAATTCTGACAAACACAACAAGGTAAATCGCTCTGTGGCGTGCTACTGATGAAATGGATAAACAGCCGGGGGCTATGGGGACGAGTGCTGGTTTAGCTTTGCGATTAGGACAGGCTATTTTCTCTGTCAGTTCACTTCTTTTCATGTGTTTTGGTGTTTCTTTCTTAAGCTACAGCTACGCTCCCTTCTGGTACTTGAATTTTTTTATTTTTTTTTTAATTTCATCTCTTTTCACTATTCATCTCTTTTTTTCTTCTTCCTCGAGGTAATTTATTTCTGATTGTTGCTGTTTAAATCTTTGAATTTGGTGGGCTCTTGAAATTGGCATGTAAGTGAGATGAGTGGATTGAAAAGATTGAGCAGCCGATTGTAAGGAAACTAAACTTGAATTAGGCCTTAGCATGAGTACTTTTCATTTGTCTTAGCATCGGTGGATAGAGTTATCTGATATAAATTAGTTGAGGGCTAACCCGGAGTACCGGACACCATGATCATCAAATAAAGAAAAACCAAAATCTTTCCACTTTGAACTGTTAGGCACTTTTGAAATTACCACGTGATTGTCCAGTAGAGAGCTTTCATTGACCTTTTAAAGGTGTAAATAAAAAGAACTTCACAAGAGAGTTGTGAAGTTCATTTTCAGTATGGAGTCTGGAAGAAATGGTCAAATGCACATAAAGAAGCTTATATGTTGGATATATGCTTGGGTTATTTTATTGGAGTAGTTAATTGGTTGTTGCGGATTTGGATACATAATTGAGGTTAGATATGACCATTGTCAACAGGTCCTATTGCATGCTTTCTATACTTGAGAACTTGAAACAGATATCAGATTTTCTCTGTACTGTATCCAGAGTTTTGTCGTGAAAGCTGCCATTGGGAAGTGCTTAGTTGAGATTTATGCTGCCTGGAATCATCTATGCAGTTGTCATACCAATTGGAGTATTATACTGAAACGAGTTGTTAGTGGGATATATCTCACATTTGTAGTTATGTTTTTGTATAGCCTCAATTGGAGTATTATATATAATTTGAATTTGGCCTGCATAGGGCCCATTAAAGGAGGAAATGCTCTCTACCA</gDNA_template>
            <first_frame> S  I  H  S  V  S  K  Q  K  K  T  A  H  Y  *  L  S  C  R  I  L  T  N  T  T  R  *  I  A  L  W  R  A  T  D  E  M  D  K  Q  P  G  A  M  G  T  S  A  G  L  A  L  R  L  G  Q  A  I  F  S  V  S  S  L  L  F  M  C  F  G  V  S  F  L  S  Y  S  Y  A  P  F  W  Y  L  N  F  F  I  F  F  L  I  S  S  L  F  T  I  H  L  F  F  S  S  S  S  R  *  F  I  S  D  C  C  C  L  N  L  *  I  W  W  A  L  E  I  G  M  *  V  R  *  V  D  *  K  D  *  A  A  D  C  K  E  T  K  L  E  L  G  L  S  M  S  T  F  H  L  S  *  H  R  W  I  E  L  S  D  I  N  *  L  R  A  N  P  E  Y  R  T  P  *  S  S  N  K  E  K  P  K  S  F  H  F  E  L  L  G  T  F  E  I  T  T  *  L  S  S  R  E  L  S  L  T  F  *  R  C  K  *  K  E  L  H  K  R  V  V  K  F  I  F  S  M  E  S  G  R  N  G  Q  M  H  I  K  K  L  I  C  W  I  Y  A  W  V  I  L  L  E  *  L  I  G  C  C  G  F  G  Y  I  I  E  V  R  Y  D  H  C  Q  Q  V  L  L  H  A  F  Y  T  *  E  L  E  T  D  I  R  F  S  L  Y  C  I  Q  S  F  V  V  K  A  A  I  G  K  C  L  V  E  I  Y  A  A  W  N  H  L  C  S  C  H  T  N  W  S  I  I  L  K  R  V  V  S  G  I  Y  L  T  F  V  V  M  F  L  Y  S  L  N  W  S  I  I  Y  N  L  N  L  A  C  I  G  P  I  K  G  G  N  A  L  Y   </first_frame>
            <second_frame>  P  F  T  P  F  Q  N  K  K  K  L  H  I  I  D  *  V  A  E  F  *  Q  T  Q  Q  G  K  S  L  C  G  V  L  L  M  K  W  I  N  S  R  G  L  W  G  R  V  L  V  *  L  C  D  *  D  R  L  F  S  L  S  V  H  F  F  S  C  V  L  V  F  L  S  *  A  T  A  T  L  P  S  G  T  *  I  F  L  F  F  F  *  F  H  L  F  S  L  F  I  S  F  F  L  L  P  R  G  N  L  F  L  I  V  A  V  *  I  F  E  F  G  G  L  L  K  L  A  C  K  *  D  E  W  I  E  K  I  E  Q  P  I  V  R  K  L  N  L  N  *  A  L  A  *  V  L  F  I  C  L  S  I  G  G  *  S  Y  L  I  *  I  S  *  G  L  T  R  S  T  G  H  H  D  H  Q  I  K  K  N  Q  N  L  S  T  L  N  C  *  A  L  L  K  L  P  R  D  C  P  V  E  S  F  H  *  P  F  K  G  V  N  K  K  N  F  T  R  E  L  *  S  S  F  S  V  W  S  L  E  E  M  V  K  C  T  *  R  S  L  Y  V  G  Y  M  L  G  L  F  Y  W  S  S  *  L  V  V  A  D  L  D  T  *  L  R  L  D  M  T  I  V  N  R  S  Y  C  M  L  S  I  L  E  N  L  K  Q  I  S  D  F  L  C  T  V  S  R  V  L  S  *  K  L  P  L  G  S  A  *  L  R  F  M  L  P  G  I  I  Y  A  V  V  I  P  I  G  V  L  Y  *  N  E  L  L  V  G  Y  I  S  H  L  *  L  C  F  C  I  A  S  I  G  V  L  Y  I  I  *  I  W  P  A  *  G  P  L  K  E  E  M  L  S  T  </second_frame>
            <third_frame>   H  S  L  R  F  K  T  K  K  N  C  T  L  L  I  E  L  Q  N  S  D  K  H  N  K  V  N  R  S  V  A  C  Y  *  *  N  G  *  T  A  G  G  Y  G  D  E  C  W  F  S  F  A  I  R  T  G  Y  F  L  C  Q  F  T  S  F  H  V  F  W  C  F  F  L  K  L  Q  L  R  S  L  L  V  L  E  F  F  Y  F  F  F  N  F  I  S  F  H  Y  S  S  L  F  F  F  F  L  E  V  I  Y  F  *  L  L  L  F  K  S  L  N  L  V  G  S  *  N  W  H  V  S  E  M  S  G  L  K  R  L  S  S  R  L  *  G  N  *  T  *  I  R  P  *  H  E  Y  F  S  F  V  L  A  S  V  D  R  V  I  *  Y  K  L  V  E  G  *  P  G  V  P  D  T  M  I  I  K  *  R  K  T  K  I  F  P  L  *  T  V  R  H  F  *  N  Y  H  V  I  V  Q  *  R  A  F  I  D  L  L  K  V  *  I  K  R  T  S  Q  E  S  C  E  V  H  F  Q  Y  G  V  W  K  K  W  S  N  A  H  K  E  A  Y  M  L  D  I  C  L  G  Y  F  I  G  V  V  N  W  L  L  R  I  W  I  H  N  *  G  *  I  *  P  L  S  T  G  P  I  A  C  F  L  Y  L  R  T  *  N  R  Y  Q  I  F  S  V  L  Y  P  E  F  C  R  E  S  C  H  W  E  V  L  S  *  D  L  C  C  L  E  S  S  M  Q  L  S  Y  Q  L  E  Y  Y  T  E  T  S  C  *  W  D  I  S  H  I  C  S  Y  V  F  V  *  P  Q  L  E  Y  Y  I  *  F  E  F  G  L  H  R  A  H  *  R  R  K  C  S  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89659" stop="89925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELETDIRFSLYCIQSFVVKAAIGKCLVEIYAAWNHLCSCHTNWSIILKRVVSGIYLTFVVMFLYSLNWSIIYNLNLACIGPIKGGNALY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88873" stop="89115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALWRATDEMDKQPGAMGTSAGLALRLGQAIFSVSSLLFMCFGVSFLSYSYAPFWYLNFFIFFLISSLFTIHLFFSSSSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0163K16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88908" stop="89126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAGGYGDECWFSFAIRTGYFLCQFTSFHVFWCFFLKLQLRSLLVLEFFYFFFNFISFHYSSLFFFFLEVIYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 24112 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2009 bytes was the average size of a spliced alignment
$ 16872 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1687 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2006-11-03 16:19:34
-->
